Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040269.t1 | XP_013448969.1 | 59.4 | 239 | 78 | 4 | 39 | 263 | 21 | 254 | 1.50E-60 | 243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040269.t1 | Q8W487 | 34.4 | 215 | 119 | 5 | 63 | 263 | 44 | 250 | 1.7e-20 | 101.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040269.t1 | I3SR78 | 59.4 | 239 | 78 | 4 | 39 | 263 | 21 | 254 | 1.1e-60 | 243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29523 | MS.gene040269 | PPI |
| MS.gene061905 | MS.gene040269 | PPI |
| MS.gene32507 | MS.gene040269 | PPI |
| MS.gene09845 | MS.gene040269 | PPI |
| MS.gene045358 | MS.gene040269 | PPI |
| MS.gene040269 | MS.gene77531 | PPI |
| MS.gene29525 | MS.gene040269 | PPI |
| MS.gene59233 | MS.gene040269 | PPI |
| MS.gene39294 | MS.gene040269 | PPI |
| MS.gene040269 | MS.gene75670 | PPI |
| MS.gene018553 | MS.gene040269 | PPI |
| MS.gene29527 | MS.gene040269 | PPI |
| MS.gene45646 | MS.gene040269 | PPI |
| MS.gene040269 | MS.gene50127 | PPI |
| MS.gene040269 | MS.gene59232 | PPI |
| MS.gene040269 | MS.gene022752 | PPI |
| MS.gene040269 | MS.gene64512 | PPI |
| MS.gene020215 | MS.gene040269 | PPI |
| MS.gene50126 | MS.gene040269 | PPI |
| MS.gene32510 | MS.gene040269 | PPI |
| MS.gene040269 | MS.gene29526 | PPI |
| MS.gene040269 | MS.gene50125 | PPI |
| MS.gene32509 | MS.gene040269 | PPI |
| MS.gene040269 | MS.gene32508 | PPI |
| MS.gene29524 | MS.gene040269 | PPI |
| MS.gene79893 | MS.gene040269 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040269.t1 | MTR_7g063520 | 59.167 | 240 | 79 | 4 | 38 | 263 | 20 | 254 | 2.29e-86 | 258 |
| MS.gene040269.t1 | MTR_5g080880 | 37.759 | 241 | 121 | 7 | 39 | 262 | 26 | 254 | 7.19e-39 | 138 |
| MS.gene040269.t1 | MTR_5g080870 | 36.571 | 175 | 89 | 5 | 95 | 262 | 60 | 219 | 1.03e-20 | 90.1 |
| MS.gene040269.t1 | MTR_4g006560 | 32.258 | 155 | 96 | 2 | 117 | 263 | 83 | 236 | 4.02e-15 | 73.2 |
| MS.gene040269.t1 | MTR_1g013120 | 32.692 | 156 | 95 | 5 | 117 | 263 | 79 | 233 | 7.64e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040269.t1 | AT5G02050 | 42.791 | 215 | 88 | 5 | 74 | 263 | 63 | 267 | 1.58e-45 | 154 |
| MS.gene040269.t1 | AT2G39795 | 36.279 | 215 | 115 | 5 | 63 | 263 | 44 | 250 | 3.07e-32 | 119 |
| MS.gene040269.t1 | AT3G55605 | 38.788 | 165 | 84 | 3 | 115 | 263 | 95 | 258 | 6.67e-31 | 115 |
| MS.gene040269.t1 | AT5G05990 | 36.932 | 176 | 87 | 3 | 110 | 262 | 84 | 258 | 4.73e-29 | 110 |
| MS.gene040269.t1 | AT2G39790 | 34.286 | 210 | 118 | 8 | 62 | 262 | 41 | 239 | 6.77e-24 | 97.1 |
| MS.gene040269.t1 | AT1G15870 | 30.000 | 160 | 100 | 4 | 113 | 263 | 85 | 241 | 2.17e-16 | 76.6 |
| MS.gene040269.t1 | AT1G80720 | 24.779 | 226 | 155 | 6 | 46 | 263 | 23 | 241 | 6.44e-14 | 69.7 |
| MS.gene040269.t1 | AT1G80720 | 28.333 | 180 | 120 | 5 | 92 | 263 | 11 | 189 | 8.35e-14 | 68.6 |
Find 44 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTCATCAGGCTTCTTT+AGG | 0.167703 | 7.1:+65722983 | None:intergenic |
| ATGGAGTGTGTCTGGAGTTT+GGG | 0.192697 | 7.1:-65723047 | MS.gene040269:CDS |
| GTAACGGCACCGTCGTTTCT+TGG | 0.261212 | 7.1:+65725425 | None:intergenic |
| AATGGAGTGTGTCTGGAGTT+TGG | 0.285363 | 7.1:-65723048 | MS.gene040269:CDS |
| ATTCCTCAATGAAGCTCTTC+AGG | 0.341876 | 7.1:+65722708 | None:intergenic |
| AGATTCATCAGGCTTCTTTA+GGG | 0.360331 | 7.1:+65722984 | None:intergenic |
| TTCTTTGTCGCAAAGGTTAA+CGG | 0.366759 | 7.1:+65723639 | None:intergenic |
| AAAATAGACACAACTAATAA+AGG | 0.372853 | 7.1:+65723078 | None:intergenic |
| GAACACAGAGAAGAGAGAAC+AGG | 0.403439 | 7.1:-65724213 | MS.gene040269:CDS |
| CAAAGGAAATGGAGTGTGTC+TGG | 0.417993 | 7.1:-65723055 | MS.gene040269:CDS |
| TCAACGCTTTGCGCGATCTC+AGG | 0.426742 | 7.1:-65725466 | MS.gene040269:CDS |
| TATATAACGAACGTGGAATC+AGG | 0.436730 | 7.1:-65722948 | MS.gene040269:intron |
| CATGTTCAACAAAGACAAAA+AGG | 0.444344 | 7.1:-65722753 | MS.gene040269:CDS |
| CGTTCTTGTTCTTCTTGTAA+CGG | 0.455991 | 7.1:+65725409 | None:intergenic |
| AGCTGGTCTTCAGATTCATC+AGG | 0.457345 | 7.1:+65722973 | None:intergenic |
| TTAGCTTGGGTGTTATCCCT+CGG | 0.480220 | 7.1:+65722795 | None:intergenic |
| CACCGTCGTTTCTTGGATTG+CGG | 0.504156 | 7.1:+65725432 | None:intergenic |
| TTCATTACTTATTACCACAC+TGG | 0.517663 | 7.1:+65724180 | None:intergenic |
| TTTGAGATTGTGGACAACCC+TGG | 0.521588 | 7.1:-65723210 | MS.gene040269:CDS |
| CACGTTCGTTATATACCAGC+TGG | 0.522127 | 7.1:+65722956 | None:intergenic |
| ACTCAAGAAAAGCCTTCTGC+AGG | 0.524332 | 7.1:+65722828 | None:intergenic |
| GGGTTGTCCACAATCTCAAA+AGG | 0.524335 | 7.1:+65723213 | None:intergenic |
| TGATCAGTGCAGTGCATGAA+GGG | 0.527365 | 7.1:-65724242 | MS.gene040269:intron |
| TGATGAATCTGAAGACCAGC+TGG | 0.536120 | 7.1:-65722971 | MS.gene040269:CDS |
| TTGATCAGTGCAGTGCATGA+AGG | 0.536375 | 7.1:-65724243 | MS.gene040269:intron |
| AAGATGTGAGAGGCTACAAA+AGG | 0.568704 | 7.1:+65723610 | None:intergenic |
| CTTGAGTATCTCAAGATCCG+AGG | 0.575723 | 7.1:-65722812 | MS.gene040269:CDS |
| GAGTGGTTTCTTTGTCGCAA+AGG | 0.575847 | 7.1:+65723632 | None:intergenic |
| TGAAATCAACTGTGCTCTTG+CGG | 0.579360 | 7.1:-65723539 | MS.gene040269:CDS |
| AACACAGAGAAGAGAGAACA+GGG | 0.592660 | 7.1:-65724212 | MS.gene040269:CDS |
| TTGAGTATCTCAAGATCCGA+GGG | 0.593783 | 7.1:-65722811 | MS.gene040269:CDS |
| TAGTAATCGTAACATAATCA+CGG | 0.602610 | 7.1:+65723013 | None:intergenic |
| ATTGGATGAAAACCTGCAGA+AGG | 0.602906 | 7.1:-65722840 | MS.gene040269:CDS |
| GAACCTGAAGAGCTTCATTG+AGG | 0.605881 | 7.1:-65722711 | MS.gene040269:CDS |
| GGTAATCAACTGTGATCTTG+AGG | 0.606497 | 7.1:-65723518 | MS.gene040269:CDS |
| ATCTCAAAAGGAAAATAACC+AGG | 0.622881 | 7.1:+65723225 | None:intergenic |
| TGGAGTGTGTCTGGAGTTTG+GGG | 0.633955 | 7.1:-65723046 | MS.gene040269:CDS |
| GCCTCTCACATCTTAGCCTG+CGG | 0.652252 | 7.1:-65723601 | MS.gene040269:CDS |
| GTGAGAGGCTACAAAAGGAG+TGG | 0.661184 | 7.1:+65723615 | None:intergenic |
| CACTCACGTGAGTGACGACG+AGG | 0.672531 | 7.1:-65723124 | MS.gene040269:CDS |
| CACCGCAATCCAAGAAACGA+CGG | 0.681318 | 7.1:-65725434 | MS.gene040269:CDS |
| CAGCTGGTATATAACGAACG+TGG | 0.682536 | 7.1:-65722955 | MS.gene040269:CDS |
| GCCGCAGGCTAAGATGTGAG+AGG | 0.684966 | 7.1:+65723600 | None:intergenic |
| CAGGGAGCAAAGATCCAGTG+TGG | 0.732445 | 7.1:-65724194 | MS.gene040269:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAACTTAAACTTAAAA+CGG | + | chr7.1:65724817-65724836 | None:intergenic | 10.0% |
| !! | AAAGTAGAATATATTGAATT+GGG | - | chr7.1:65723339-65723358 | MS.gene040269:intron | 15.0% |
| !! | AATATTCATATGATTTGAAA+AGG | + | chr7.1:65724853-65724872 | None:intergenic | 15.0% |
| !! | GTATTAATTAGAGTTATAAT+TGG | - | chr7.1:65724296-65724315 | MS.gene040269:intron | 15.0% |
| !! | TAAAGTAGAATATATTGAAT+TGG | - | chr7.1:65723338-65723357 | MS.gene040269:intron | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+TGG | + | chr7.1:65724107-65724126 | None:intergenic | 15.0% |
| !!! | CATTTTATTATCAATGATTT+TGG | - | chr7.1:65723910-65723929 | MS.gene040269:intron | 15.0% |
| !!! | GTTTTAAGTTTAAGTTTTTA+AGG | - | chr7.1:65724816-65724835 | MS.gene040269:intron | 15.0% |
| !! | AAAATAGACACAACTAATAA+AGG | + | chr7.1:65725103-65725122 | None:intergenic | 20.0% |
| !! | AGAATCAAATTAGGAATTTA+CGG | - | chr7.1:65723746-65723765 | MS.gene040269:intron | 20.0% |
| !! | ATATTAGTAGAAAAATATGG+TGG | + | chr7.1:65724104-65724123 | None:intergenic | 20.0% |
| !! | TATAGACATATTTAATCTGA+CGG | - | chr7.1:65724025-65724044 | MS.gene040269:intron | 20.0% |
| !!! | ACTTACTTTGACATATTTTT+CGG | - | chr7.1:65723431-65723450 | MS.gene040269:intron | 20.0% |
| !!! | TTATTCATTTTTCTTCATCT+CGG | + | chr7.1:65722908-65722927 | None:intergenic | 20.0% |
| !!! | TTCTGTTTGTTTTTTCTTAA+TGG | - | chr7.1:65724730-65724749 | MS.gene040269:intron | 20.0% |
| !!! | TTTTCTTAATATGTGTGAAA+TGG | + | chr7.1:65723240-65723259 | None:intergenic | 20.0% |
| ! | AATCTAACGCTAAAATTAAG+TGG | + | chr7.1:65723500-65723519 | None:intergenic | 25.0% |
| ! | ACAAATGACTCAGTTATTAT+GGG | - | chr7.1:65724383-65724402 | MS.gene040269:intron | 25.0% |
| ! | ACATCAATAAATCTTTCAAG+CGG | + | chr7.1:65723600-65723619 | None:intergenic | 25.0% |
| ! | AGAACGAAAACGTATAATTT+AGG | - | chr7.1:65722786-65722805 | MS.gene040269:CDS | 25.0% |
| ! | ATAGAAAAGATAGTCAAAAC+AGG | - | chr7.1:65723882-65723901 | MS.gene040269:intron | 25.0% |
| ! | CATTCATTGTTAAAGTTACT+CGG | + | chr7.1:65723649-65723668 | None:intergenic | 25.0% |
| ! | GATTCTTCTGTGAAATAAAA+TGG | + | chr7.1:65723732-65723751 | None:intergenic | 25.0% |
| ! | TACAAATGACTCAGTTATTA+TGG | - | chr7.1:65724382-65724401 | MS.gene040269:intron | 25.0% |
| ! | TAGTAATCGTAACATAATCA+CGG | + | chr7.1:65725168-65725187 | None:intergenic | 25.0% |
| ! | TGTTGTATTGAAAAGTGAAA+CGG | - | chr7.1:65724332-65724351 | MS.gene040269:intron | 25.0% |
| ! | TTAAGCTCAAAATTATGCAT+TGG | - | chr7.1:65724227-65724246 | MS.gene040269:CDS | 25.0% |
| ! | TTGCAAAGTTAAATAACCAT+CGG | + | chr7.1:65724786-65724805 | None:intergenic | 25.0% |
| ! | TTGTAAAAAAATATTGTCCG+AGG | + | chr7.1:65724367-65724386 | None:intergenic | 25.0% |
| ! | TTTCACAGAAGAATCAAATT+AGG | - | chr7.1:65723737-65723756 | MS.gene040269:intron | 25.0% |
| !! | TGTTATCTTTTGCAGTAAAT+TGG | - | chr7.1:65725320-65725339 | MS.gene040269:intron | 25.0% |
| !! | TTAGTTGTGTCTATTTTCAA+AGG | - | chr7.1:65725106-65725125 | MS.gene040269:intron | 25.0% |
| !!! | ATATTTTTCGGTGAATTCTA+GGG | - | chr7.1:65723443-65723462 | MS.gene040269:intron | 25.0% |
| !!! | ATTTTAAAGCTTAAAGCTTC+GGG | - | chr7.1:65723786-65723805 | MS.gene040269:intron | 25.0% |
| !!! | GATTTTAAAGCTTAAAGCTT+CGG | - | chr7.1:65723785-65723804 | MS.gene040269:intron | 25.0% |
| !!! | TGAGGTAAAATTTAGTCTTA+CGG | - | chr7.1:65723055-65723074 | MS.gene040269:CDS | 25.0% |
| !!! | TTATTTTCCTTTTGAGATTG+TGG | - | chr7.1:65724958-65724977 | MS.gene040269:intron | 25.0% |
| !!! | TTGTTTTTTCTTAATGGCTT+TGG | - | chr7.1:65724736-65724755 | MS.gene040269:intron | 25.0% |
| AATGTACCAATACTTGACAA+AGG | + | chr7.1:65723301-65723320 | None:intergenic | 30.0% | |
| AGAATATATTGAATTGGGAG+TGG | - | chr7.1:65723344-65723363 | MS.gene040269:intron | 30.0% | |
| AGAGAGAAATAACTTGGATT+CGG | + | chr7.1:65723560-65723579 | None:intergenic | 30.0% | |
| ATCTCAAAAGGAAAATAACC+AGG | + | chr7.1:65724956-65724975 | None:intergenic | 30.0% | |
| ATTCATCGATACGAATCTTA+TGG | + | chr7.1:65724155-65724174 | None:intergenic | 30.0% | |
| CAAAGACAAAAAGGAATACT+TGG | - | chr7.1:65725434-65725453 | MS.gene040269:CDS | 30.0% | |
| CATGTATTGCTGCAAAAATT+TGG | + | chr7.1:65725409-65725428 | None:intergenic | 30.0% | |
| CATGTTCAACAAAGACAAAA+AGG | - | chr7.1:65725425-65725444 | MS.gene040269:CDS | 30.0% | |
| CTTCTGTGAAATAAAATGGT+AGG | + | chr7.1:65723728-65723747 | None:intergenic | 30.0% | |
| GTTGTATTGAAAAGTGAAAC+GGG | - | chr7.1:65724333-65724352 | MS.gene040269:intron | 30.0% | |
| TACAAAACTATCGTACAAGA+AGG | + | chr7.1:65724763-65724782 | None:intergenic | 30.0% | |
| TCAAATGAGTCATCTATTGT+AGG | + | chr7.1:65723391-65723410 | None:intergenic | 30.0% | |
| TCAACTGTGTCATGTATTAT+GGG | - | chr7.1:65724264-65724283 | MS.gene040269:intron | 30.0% | |
| TTCATTACTTATTACCACAC+TGG | + | chr7.1:65724001-65724020 | None:intergenic | 30.0% | |
| ! | AGTTGAAAAATCTTTTCTCC+AGG | + | chr7.1:65724989-65725008 | None:intergenic | 30.0% |
| ! | ATGCATTGGCATACATAATA+TGG | - | chr7.1:65724241-65724260 | MS.gene040269:intron | 30.0% |
| ! | CAAATTTTGCAGGATGAATT+TGG | - | chr7.1:65723837-65723856 | MS.gene040269:intron | 30.0% |
| ! | CACTTTTGTGTAATTTTTCC+AGG | - | chr7.1:65724922-65724941 | MS.gene040269:intron | 30.0% |
| ! | GATGGTTATTTAACTTTGCA+AGG | - | chr7.1:65724785-65724804 | MS.gene040269:intron | 30.0% |
| ! | GTGTCTATTTTCAAAGGAAA+TGG | - | chr7.1:65725112-65725131 | MS.gene040269:intron | 30.0% |
| ! | GTTGAAAAATCTTTTCTCCA+GGG | + | chr7.1:65724988-65725007 | None:intergenic | 30.0% |
| ! | TAAGCAACAACAAATTTTGC+AGG | - | chr7.1:65723827-65723846 | MS.gene040269:intron | 30.0% |
| !! | AGAAAAATATGGTGGATTCT+AGG | + | chr7.1:65724096-65724115 | None:intergenic | 30.0% |
| !! | ATGATGACTGATTTGTAATG+AGG | - | chr7.1:65723037-65723056 | MS.gene040269:CDS | 30.0% |
| !! | CATATTTTTCGGTGAATTCT+AGG | - | chr7.1:65723442-65723461 | MS.gene040269:intron | 30.0% |
| !! | GAAAAATATGGTGGATTCTA+GGG | + | chr7.1:65724095-65724114 | None:intergenic | 30.0% |
| !! | TGCAAAAATTTGGTTAGCTT+GGG | + | chr7.1:65725399-65725418 | None:intergenic | 30.0% |
| !! | TTTCTTTTTCATCTGCACAA+GGG | + | chr7.1:65722823-65722842 | None:intergenic | 30.0% |
| !!! | TTTTATTTTGGGGTCTTCTA+TGG | + | chr7.1:65723182-65723201 | None:intergenic | 30.0% |
| AATAACCAGGAAATTCAACC+TGG | + | chr7.1:65724943-65724962 | None:intergenic | 35.0% | |
| AGACATATTTAATCTGACGG+TGG | - | chr7.1:65724028-65724047 | MS.gene040269:intron | 35.0% | |
| AGATTCATCAGGCTTCTTTA+GGG | + | chr7.1:65725197-65725216 | None:intergenic | 35.0% | |
| AGTGACAGAGAACTTAATGA+CGG | + | chr7.1:65724906-65724925 | None:intergenic | 35.0% | |
| CGTTCTTGTTCTTCTTGTAA+CGG | + | chr7.1:65722772-65722791 | None:intergenic | 35.0% | |
| GTCAAATTAACTGCAGTCAT+TGG | + | chr7.1:65724489-65724508 | None:intergenic | 35.0% | |
| GTCAACTGTGTCATGTATTA+TGG | - | chr7.1:65724263-65724282 | MS.gene040269:intron | 35.0% | |
| TAAGGGAGAGAGAAATAACT+TGG | + | chr7.1:65723566-65723585 | None:intergenic | 35.0% | |
| TATATAACGAACGTGGAATC+AGG | - | chr7.1:65725230-65725249 | MS.gene040269:intron | 35.0% | |
| TCTCTTCTATCAGAAGAGTT+TGG | - | chr7.1:65724425-65724444 | MS.gene040269:intron | 35.0% | |
| TGCAGATGAAAAAGAAAGAG+AGG | - | chr7.1:65722826-65722845 | MS.gene040269:CDS | 35.0% | |
| TTCTTTGTCGCAAAGGTTAA+CGG | + | chr7.1:65724542-65724561 | None:intergenic | 35.0% | |
| ! | ATGACTGCAGTTAATTTGAC+TGG | - | chr7.1:65724489-65724508 | MS.gene040269:intron | 35.0% |
| ! | ATTTTGCAGGATGAATTTGG+AGG | - | chr7.1:65723840-65723859 | MS.gene040269:intron | 35.0% |
| ! | CTGCAAAAATTTGGTTAGCT+TGG | + | chr7.1:65725400-65725419 | None:intergenic | 35.0% |
| !! | AGTTTGGATTTGTTGTGTTG+TGG | - | chr7.1:65724441-65724460 | MS.gene040269:intron | 35.0% |
| !! | CTTTCTTTTTCATCTGCACA+AGG | + | chr7.1:65722824-65722843 | None:intergenic | 35.0% |
| !! | TTCTTTTTCATCTGCACAAG+GGG | + | chr7.1:65722822-65722841 | None:intergenic | 35.0% |
| !! | TTTTTCCAGGTTGAATTTCC+TGG | - | chr7.1:65724935-65724954 | MS.gene040269:intron | 35.0% |
| !!! | ACGGAGGGAGTATTTTATTT+TGG | + | chr7.1:65723194-65723213 | None:intergenic | 35.0% |
| !!! | CGGAGGGAGTATTTTATTTT+GGG | + | chr7.1:65723193-65723212 | None:intergenic | 35.0% |
| !!! | GGAGGGAGTATTTTATTTTG+GGG | + | chr7.1:65723192-65723211 | None:intergenic | 35.0% |
| AACACAGAGAAGAGAGAACA+GGG | - | chr7.1:65723966-65723985 | MS.gene040269:intron | 40.0% | |
| AAGATGTGAGAGGCTACAAA+AGG | + | chr7.1:65724571-65724590 | None:intergenic | 40.0% | |
| AAGCGGTTGAAAGAGAGTAA+GGG | + | chr7.1:65723583-65723602 | None:intergenic | 40.0% | |
| AATCTGACGGTGGAATAAAG+TGG | - | chr7.1:65724038-65724057 | MS.gene040269:intron | 40.0% | |
| ACTCAGTTATTATGGGACAG+AGG | - | chr7.1:65724390-65724409 | MS.gene040269:intron | 40.0% | |
| ATTCCTCAATGAAGCTCTTC+AGG | + | chr7.1:65725473-65725492 | None:intergenic | 40.0% | |
| ATTGGATGAAAACCTGCAGA+AGG | - | chr7.1:65725338-65725357 | MS.gene040269:intron | 40.0% | |
| CAAAACGTTGCAGAAAACGT+AGG | - | chr7.1:65724688-65724707 | MS.gene040269:intron | 40.0% | |
| CAGATTCATCAGGCTTCTTT+AGG | + | chr7.1:65725198-65725217 | None:intergenic | 40.0% | |
| CTCAGTTATTATGGGACAGA+GGG | - | chr7.1:65724391-65724410 | MS.gene040269:intron | 40.0% | |
| CTGTGTCATGTATTATGGGA+CGG | - | chr7.1:65724268-65724287 | MS.gene040269:intron | 40.0% | |
| GGTAATCAACTGTGATCTTG+AGG | - | chr7.1:65724660-65724679 | MS.gene040269:intron | 40.0% | |
| GTCATCTATTGTAGGACAGA+AGG | + | chr7.1:65723383-65723402 | None:intergenic | 40.0% | |
| TACTCGGCAATAAGAGAAAG+AGG | + | chr7.1:65723633-65723652 | None:intergenic | 40.0% | |
| TGAAATCAACTGTGCTCTTG+CGG | - | chr7.1:65724639-65724658 | MS.gene040269:intron | 40.0% | |
| TGAGTGCCTTTGTCAAGTAT+TGG | - | chr7.1:65723292-65723311 | MS.gene040269:intron | 40.0% | |
| TTGAGTATCTCAAGATCCGA+GGG | - | chr7.1:65725367-65725386 | MS.gene040269:intron | 40.0% | |
| ! | TCGGTGTGATAATGACTATC+AGG | + | chr7.1:65723541-65723560 | None:intergenic | 40.0% |
| !! | CAATAAGAGAAAGAGGCACT+CGG | + | chr7.1:65723626-65723645 | None:intergenic | 40.0% |
| !!! | GTACGATAGTTTTGTACCGA+TGG | - | chr7.1:65724767-65724786 | MS.gene040269:intron | 40.0% |
| AATAAAGTGGTACACCGGTG+AGG | - | chr7.1:65724051-65724070 | MS.gene040269:intron | 45.0% | |
| AATTAAGTGGTCCACCAGTG+AGG | + | chr7.1:65723487-65723506 | None:intergenic | 45.0% | |
| ACTCAAGAAAAGCCTTCTGC+AGG | + | chr7.1:65725353-65725372 | None:intergenic | 45.0% | |
| ATAAAGTGGTACACCGGTGA+GGG | - | chr7.1:65724052-65724071 | MS.gene040269:intron | 45.0% | |
| ATTAAGTGGTCCACCAGTGA+GGG | + | chr7.1:65723486-65723505 | None:intergenic | 45.0% | |
| CAAAGGAAATGGAGTGTGTC+TGG | - | chr7.1:65725123-65725142 | MS.gene040269:intron | 45.0% | |
| CAAGCGGTTGAAAGAGAGTA+AGG | + | chr7.1:65723584-65723603 | None:intergenic | 45.0% | |
| CACGTTCGTTATATACCAGC+TGG | + | chr7.1:65725225-65725244 | None:intergenic | 45.0% | |
| CAGCTGGTATATAACGAACG+TGG | - | chr7.1:65725223-65725242 | MS.gene040269:intron | 45.0% | |
| CTTGAGTATCTCAAGATCCG+AGG | - | chr7.1:65725366-65725385 | MS.gene040269:intron | 45.0% | |
| GAACACAGAGAAGAGAGAAC+AGG | - | chr7.1:65723965-65723984 | MS.gene040269:intron | 45.0% | |
| GAACCTGAAGAGCTTCATTG+AGG | - | chr7.1:65725467-65725486 | MS.gene040269:CDS | 45.0% | |
| GAGTGGTTTCTTTGTCGCAA+AGG | + | chr7.1:65724549-65724568 | None:intergenic | 45.0% | |
| GGATCAATTAAGTCCCTCAC+TGG | - | chr7.1:65723470-65723489 | MS.gene040269:intron | 45.0% | |
| GGGTTGTCCACAATCTCAAA+AGG | + | chr7.1:65724968-65724987 | None:intergenic | 45.0% | |
| GGTGGAATAAAGTGGTACAC+CGG | - | chr7.1:65724046-65724065 | MS.gene040269:intron | 45.0% | |
| GTCATGTATTATGGGACGGA+GGG | - | chr7.1:65724272-65724291 | MS.gene040269:intron | 45.0% | |
| TATTATGGGACAGAGGGAGT+AGG | - | chr7.1:65724397-65724416 | MS.gene040269:intron | 45.0% | |
| TCAATTAAGTCCCTCACTGG+TGG | - | chr7.1:65723473-65723492 | MS.gene040269:intron | 45.0% | |
| TCTACTACCCCCGTTAAACT+AGG | + | chr7.1:65723217-65723236 | None:intergenic | 45.0% | |
| TGAAACGGGTCAAGATTCCT+CGG | - | chr7.1:65724347-65724366 | MS.gene040269:intron | 45.0% | |
| TGATCAGTGCAGTGCATGAA+GGG | - | chr7.1:65723936-65723955 | MS.gene040269:intron | 45.0% | |
| TGATGAATCTGAAGACCAGC+TGG | - | chr7.1:65725207-65725226 | MS.gene040269:intron | 45.0% | |
| TGTCATGTATTATGGGACGG+AGG | - | chr7.1:65724271-65724290 | MS.gene040269:intron | 45.0% | |
| TTGATCAGTGCAGTGCATGA+AGG | - | chr7.1:65723935-65723954 | MS.gene040269:intron | 45.0% | |
| ! | AATGGAGTGTGTCTGGAGTT+TGG | - | chr7.1:65725130-65725149 | MS.gene040269:intron | 45.0% |
| ! | ATGGAGTGTGTCTGGAGTTT+GGG | - | chr7.1:65725131-65725150 | MS.gene040269:intron | 45.0% |
| ! | TTAGCTTGGGTGTTATCCCT+CGG | + | chr7.1:65725386-65725405 | None:intergenic | 45.0% |
| ! | TTTGAGATTGTGGACAACCC+TGG | - | chr7.1:65724968-65724987 | MS.gene040269:intron | 45.0% |
| !! | AGCTGGTCTTCAGATTCATC+AGG | + | chr7.1:65725208-65725227 | None:intergenic | 45.0% |
| !! | ATATGGTGGATTCTAGGGTG+AGG | + | chr7.1:65724090-65724109 | None:intergenic | 45.0% |
| !! | TATGGTGGATTCTAGGGTGA+GGG | + | chr7.1:65724089-65724108 | None:intergenic | 45.0% |
| CACCGCAATCCAAGAAACGA+CGG | - | chr7.1:65722744-65722763 | MS.gene040269:CDS | 50.0% | |
| CACCGTCGTTTCTTGGATTG+CGG | + | chr7.1:65722749-65722768 | None:intergenic | 50.0% | |
| CGTTGCAGAAAACGTAGGTC+TGG | - | chr7.1:65724693-65724712 | MS.gene040269:intron | 50.0% | |
| CTACCCCCGTTAAACTAGGA+CGG | + | chr7.1:65723213-65723232 | None:intergenic | 50.0% | |
| CTCCCTCCGTCCTAGTTTAA+CGG | - | chr7.1:65723204-65723223 | MS.gene040269:CDS | 50.0% | |
| GGATCAATCAAGTCCCTCAC+CGG | + | chr7.1:65724068-65724087 | None:intergenic | 50.0% | |
| GTGAGAGGCTACAAAAGGAG+TGG | + | chr7.1:65724566-65724585 | None:intergenic | 50.0% | |
| TCCCTCCGTCCTAGTTTAAC+GGG | - | chr7.1:65723205-65723224 | MS.gene040269:CDS | 50.0% | |
| ! | AGTTTTCGCTAAAACGCCGC+AGG | + | chr7.1:65724596-65724615 | None:intergenic | 50.0% |
| ! | TGGAGTGTGTCTGGAGTTTG+GGG | - | chr7.1:65725132-65725151 | MS.gene040269:intron | 50.0% |
| !! | AGCGCTGTGGAAGGTTTTGA+AGG | + | chr7.1:65724515-65724534 | None:intergenic | 50.0% |
| !! | TTCGGTGAATTCTAGGGCGA+GGG | - | chr7.1:65723449-65723468 | MS.gene040269:intron | 50.0% |
| !! | TTTCGGTGAATTCTAGGGCG+AGG | - | chr7.1:65723448-65723467 | MS.gene040269:intron | 50.0% |
| CAGGGAGCAAAGATCCAGTG+TGG | - | chr7.1:65723984-65724003 | MS.gene040269:intron | 55.0% | |
| CCCCGTTAAACTAGGACGGA+GGG | + | chr7.1:65723209-65723228 | None:intergenic | 55.0% | |
| CCCTCCGTCCTAGTTTAACG+GGG | - | chr7.1:65723206-65723225 | MS.gene040269:CDS | 55.0% | |
| CCTCCGTCCTAGTTTAACGG+GGG | - | chr7.1:65723207-65723226 | MS.gene040269:CDS | 55.0% | |
| GCCTCTCACATCTTAGCCTG+CGG | - | chr7.1:65724577-65724596 | MS.gene040269:intron | 55.0% | |
| GTAACGGCACCGTCGTTTCT+TGG | + | chr7.1:65722756-65722775 | None:intergenic | 55.0% | |
| TCAACGCTTTGCGCGATCTC+AGG | - | chr7.1:65722712-65722731 | MS.gene040269:CDS | 55.0% | |
| AACGGCGATAGCGCTGTGGA+AGG | + | chr7.1:65724524-65724543 | None:intergenic | 60.0% | |
| CACTCACGTGAGTGACGACG+AGG | - | chr7.1:65725054-65725073 | MS.gene040269:intron | 60.0% | |
| CCCCCGTTAAACTAGGACGG+AGG | + | chr7.1:65723210-65723229 | None:intergenic | 60.0% | |
| GCCGCAGGCTAAGATGTGAG+AGG | + | chr7.1:65724581-65724600 | None:intergenic | 60.0% | |
| GGTTAACGGCGATAGCGCTG+TGG | + | chr7.1:65724528-65724547 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 65722706 | 65725494 | 65722706 | ID=MS.gene040269 |
| chr7.1 | mRNA | 65722706 | 65725494 | 65722706 | ID=MS.gene040269.t1;Parent=MS.gene040269 |
| chr7.1 | exon | 65725404 | 65725494 | 65725404 | ID=MS.gene040269.t1.exon1;Parent=MS.gene040269.t1 |
| chr7.1 | CDS | 65725404 | 65725494 | 65725404 | ID=cds.MS.gene040269.t1;Parent=MS.gene040269.t1 |
| chr7.1 | exon | 65724195 | 65724252 | 65724195 | ID=MS.gene040269.t1.exon2;Parent=MS.gene040269.t1 |
| chr7.1 | CDS | 65724195 | 65724252 | 65724195 | ID=cds.MS.gene040269.t1;Parent=MS.gene040269.t1 |
| chr7.1 | exon | 65723495 | 65723669 | 65723495 | ID=MS.gene040269.t1.exon3;Parent=MS.gene040269.t1 |
| chr7.1 | CDS | 65723495 | 65723669 | 65723495 | ID=cds.MS.gene040269.t1;Parent=MS.gene040269.t1 |
| chr7.1 | exon | 65722949 | 65723256 | 65722949 | ID=MS.gene040269.t1.exon4;Parent=MS.gene040269.t1 |
| chr7.1 | CDS | 65722949 | 65723256 | 65722949 | ID=cds.MS.gene040269.t1;Parent=MS.gene040269.t1 |
| chr7.1 | exon | 65722706 | 65722865 | 65722706 | ID=MS.gene040269.t1.exon5;Parent=MS.gene040269.t1 |
| chr7.1 | CDS | 65722706 | 65722865 | 65722706 | ID=cds.MS.gene040269.t1;Parent=MS.gene040269.t1 |
| Gene Sequence |
| Protein sequence |
