Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034255.t1 | XP_003604201.1 | 90.3 | 237 | 19 | 1 | 1 | 233 | 1 | 237 | 6.10E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034255.t1 | Q8W487 | 29.1 | 223 | 151 | 3 | 14 | 232 | 31 | 250 | 2.0e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034255.t1 | G7JD84 | 90.3 | 237 | 19 | 1 | 1 | 233 | 1 | 237 | 4.4e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034255.t1 | MTR_4g006560 | 90.295 | 237 | 19 | 1 | 1 | 233 | 1 | 237 | 1.10e-150 | 419 |
| MS.gene034255.t1 | MTR_1g013120 | 41.667 | 216 | 115 | 5 | 26 | 232 | 20 | 233 | 2.87e-56 | 179 |
| MS.gene034255.t1 | MTR_7g063520 | 33.175 | 211 | 127 | 5 | 32 | 232 | 48 | 254 | 6.57e-29 | 109 |
| MS.gene034255.t1 | MTR_5g080880 | 38.506 | 174 | 91 | 4 | 73 | 231 | 82 | 254 | 8.79e-29 | 110 |
| MS.gene034255.t1 | MTR_5g080870 | 28.659 | 164 | 98 | 4 | 68 | 231 | 75 | 219 | 8.62e-13 | 67.0 |
| MS.gene034255.t1 | MTR_5g093000 | 25.434 | 173 | 111 | 6 | 68 | 233 | 54 | 215 | 1.79e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034255.t1 | AT1G15870 | 52.653 | 245 | 101 | 4 | 1 | 233 | 1 | 242 | 9.04e-85 | 252 |
| MS.gene034255.t1 | AT1G80720 | 54.065 | 246 | 96 | 8 | 1 | 233 | 1 | 242 | 4.92e-81 | 243 |
| MS.gene034255.t1 | AT1G80720 | 58.763 | 194 | 74 | 4 | 42 | 233 | 1 | 190 | 4.77e-75 | 226 |
| MS.gene034255.t1 | AT4G31930 | 39.496 | 238 | 134 | 6 | 1 | 232 | 1 | 234 | 2.75e-51 | 166 |
| MS.gene034255.t1 | AT2G39795 | 28.761 | 226 | 154 | 3 | 11 | 232 | 28 | 250 | 8.57e-26 | 101 |
| MS.gene034255.t1 | AT3G55605 | 34.146 | 164 | 96 | 3 | 79 | 232 | 97 | 258 | 1.87e-25 | 100 |
| MS.gene034255.t1 | AT5G02050 | 29.952 | 207 | 130 | 6 | 40 | 232 | 62 | 267 | 2.53e-24 | 97.8 |
| MS.gene034255.t1 | AT5G05990 | 27.976 | 168 | 106 | 2 | 79 | 231 | 91 | 258 | 8.03e-20 | 85.5 |
| MS.gene034255.t1 | AT2G39790 | 26.697 | 221 | 146 | 7 | 18 | 231 | 28 | 239 | 2.70e-15 | 73.2 |
| MS.gene034255.t1 | AT4G32605 | 31.183 | 93 | 59 | 2 | 145 | 232 | 127 | 219 | 9.74e-13 | 65.9 |
Find 52 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGAGATGTAAGTTCTTC+TGG | 0.225637 | 4.1:+88739996 | None:intergenic |
| CGAAAGCTTCTTTGCGCATT+TGG | 0.227889 | 4.1:+88739977 | None:intergenic |
| CTTGGAGATATTGACAATTA+AGG | 0.236484 | 4.1:+88737146 | None:intergenic |
| ATTTGCCAATGAAAACATTA+AGG | 0.265158 | 4.1:-88737256 | MS.gene034255:CDS |
| AATGGGAATTTGGTTGATTA+GGG | 0.289613 | 4.1:+88740065 | None:intergenic |
| GAATGGGAATTTGGTTGATT+AGG | 0.302269 | 4.1:+88740064 | None:intergenic |
| GTTGATTCTTTACAGGGAAT+TGG | 0.305625 | 4.1:-88736765 | MS.gene034255:intron |
| CGGACAGTATAGTGATAAAA+AGG | 0.337671 | 4.1:-88737083 | MS.gene034255:CDS |
| GGATAGTCTTTACGATTTCT+TGG | 0.338117 | 4.1:-88736729 | MS.gene034255:CDS |
| GTTGTTGTTGAATGGGAATT+TGG | 0.349399 | 4.1:+88740055 | None:intergenic |
| GTTGAAGCCACCATGTTTGA+TGG | 0.365174 | 4.1:-88737234 | MS.gene034255:CDS |
| TTTACGATTTCTTGGAAGTA+AGG | 0.369810 | 4.1:-88736721 | MS.gene034255:CDS |
| GAAAGCTTCTTTGCGCATTT+GGG | 0.378478 | 4.1:+88739978 | None:intergenic |
| GGAATTGGATGATGAGTTGC+AGG | 0.386849 | 4.1:-88736750 | MS.gene034255:CDS |
| AATCATGTGCTCTGCTTGGC+CGG | 0.413847 | 4.1:-88737103 | MS.gene034255:CDS |
| AATTTCATTACGAAGAAGTC+TGG | 0.426508 | 4.1:+88739942 | None:intergenic |
| TTCGGTTCATTTGTGGTGGA+TGG | 0.428242 | 4.1:-88737315 | MS.gene034255:CDS |
| TGACAAGTTCGGTTCATTTG+TGG | 0.433809 | 4.1:-88737322 | MS.gene034255:CDS |
| GCATAGTCGTTGTTGTTGAA+TGG | 0.459987 | 4.1:+88740047 | None:intergenic |
| CTGGAGATGATTTGAGAAGA+AGG | 0.473022 | 4.1:+88740015 | None:intergenic |
| TTGCAGCCTACTGACAAGTT+CGG | 0.474006 | 4.1:-88737333 | MS.gene034255:intron |
| AAGTAAACTTACTCAAAGTC+AGG | 0.478862 | 4.1:+88737012 | None:intergenic |
| AATGTAATCCATCGCTCACC+GGG | 0.484386 | 4.1:+88737288 | None:intergenic |
| CAATGTAATCCATCGCTCAC+CGG | 0.493071 | 4.1:+88737287 | None:intergenic |
| CTCAAAGTCAGGACCAGCAT+AGG | 0.500380 | 4.1:+88737023 | None:intergenic |
| CATAGTCGTTGTTGTTGAAT+GGG | 0.501011 | 4.1:+88740048 | None:intergenic |
| CAAGGGAGATGGTCATGTGC+TGG | 0.502080 | 4.1:-88737127 | MS.gene034255:CDS |
| CAGCACATGACCATCTCCCT+TGG | 0.512206 | 4.1:+88737128 | None:intergenic |
| AACAGAGATCATAGGATGGA+TGG | 0.515569 | 4.1:-88736642 | MS.gene034255:CDS |
| AAGGAGAAAACAGAGATCAT+AGG | 0.519039 | 4.1:-88736650 | MS.gene034255:CDS |
| GTCAATATCTCCAAGGGAGA+TGG | 0.521988 | 4.1:-88737138 | MS.gene034255:CDS |
| TTACGATTTCTTGGAAGTAA+GGG | 0.523724 | 4.1:-88736720 | MS.gene034255:CDS |
| TGGAAATCATGTGCTCTGCT+TGG | 0.524404 | 4.1:-88737107 | MS.gene034255:CDS |
| CAAGTTCGGTTCATTTGTGG+TGG | 0.534990 | 4.1:-88737319 | MS.gene034255:CDS |
| AAAATACTTACAGGATTGGA+AGG | 0.538098 | 4.1:+88739895 | None:intergenic |
| TACAGGATTGGAAGGAGAAG+AGG | 0.540707 | 4.1:+88739903 | None:intergenic |
| ATGACAGCTGAGCCCTATGC+TGG | 0.544341 | 4.1:-88737036 | MS.gene034255:CDS |
| ATGGCCGACCCGGTGAGCGA+TGG | 0.552023 | 4.1:-88737296 | MS.gene034255:CDS |
| TTTGTGGTGGATGGCCGACC+CGG | 0.552350 | 4.1:-88737306 | MS.gene034255:CDS |
| CTTAATTGTCAATATCTCCA+AGG | 0.564925 | 4.1:-88737145 | MS.gene034255:CDS |
| TCAAAGTCAGGACCAGCATA+GGG | 0.570818 | 4.1:+88737024 | None:intergenic |
| TTAATTGTCAATATCTCCAA+GGG | 0.571494 | 4.1:-88737144 | MS.gene034255:CDS |
| TACGATTTCTTGGAAGTAAG+GGG | 0.573631 | 4.1:-88736719 | MS.gene034255:CDS |
| TAATCCATCGCTCACCGGGT+CGG | 0.605600 | 4.1:+88737292 | None:intergenic |
| AGAAAACAGAGATCATAGGA+TGG | 0.614854 | 4.1:-88736646 | MS.gene034255:CDS |
| GAGATGATTTGAGAAGAAGG+AGG | 0.617109 | 4.1:+88740018 | None:intergenic |
| AGGAACAGCTCCATCAAACA+TGG | 0.627059 | 4.1:+88737224 | None:intergenic |
| GATCATAGGATGGATGGAGA+AGG | 0.628625 | 4.1:-88736636 | MS.gene034255:CDS |
| AATGAACCGAACTTGTCAGT+AGG | 0.644093 | 4.1:+88737327 | None:intergenic |
| ATGCGCAAAGAAGCTTTCGA+AGG | 0.659024 | 4.1:-88739973 | MS.gene034255:CDS |
| AACAGCTCCATCAAACATGG+TGG | 0.722000 | 4.1:+88737227 | None:intergenic |
| GCATCAGTACATGAAACACA+AGG | 0.733324 | 4.1:-88736669 | MS.gene034255:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATGAAATAAAGTTAAAT+TGG | - | chr4.1:88737143-88737162 | MS.gene034255:CDS | 15.0% |
| !! | ATACAATCAATTTCAAAATA+CGG | + | chr4.1:88738923-88738942 | None:intergenic | 15.0% |
| !!! | AAAGCTTAATTTTACAAAAT+CGG | + | chr4.1:88737462-88737481 | None:intergenic | 15.0% |
| !!! | AGAACTTTTTACTTTTTTTA+AGG | - | chr4.1:88736925-88736944 | MS.gene034255:intron | 15.0% |
| !!! | ATATAAAGAATCTTTTTGAT+TGG | + | chr4.1:88737774-88737793 | None:intergenic | 15.0% |
| !!! | ATGATGTTTTTATTTCTAAA+AGG | - | chr4.1:88739187-88739206 | MS.gene034255:intron | 15.0% |
| !!! | ATTTTGAAAAATAAAGTTGT+GGG | - | chr4.1:88738414-88738433 | MS.gene034255:intron | 15.0% |
| !!! | ATTTTGTAAAATTAAGCTTT+AGG | - | chr4.1:88737462-88737481 | MS.gene034255:intron | 15.0% |
| !!! | CAACTTAATTTTTTAAAATC+AGG | + | chr4.1:88738103-88738122 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGACA+TGG | - | chr4.1:88737787-88737806 | MS.gene034255:intron | 15.0% |
| !! | AAAAAAAATACTTACAGGAT+TGG | + | chr4.1:88736818-88736837 | None:intergenic | 20.0% |
| !! | AAGAGAAAAAAAATACTTAC+AGG | + | chr4.1:88736823-88736842 | None:intergenic | 20.0% |
| !! | TAAGATTCTGTTTGAATAAA+GGG | + | chr4.1:88738016-88738035 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTCAAAA+CGG | - | chr4.1:88737209-88737228 | MS.gene034255:CDS | 20.0% |
| !!! | AATTTTTTAAAATCAGGCAT+GGG | + | chr4.1:88738097-88738116 | None:intergenic | 20.0% |
| !!! | ACTATTGCATAATAGAATTT+TGG | - | chr4.1:88739879-88739898 | MS.gene034255:intron | 20.0% |
| !!! | AGTAGCTCTAAATATTTTAT+TGG | + | chr4.1:88738811-88738830 | None:intergenic | 20.0% |
| !!! | AGTTAAACTGTTTTTTGTAT+AGG | - | chr4.1:88737607-88737626 | MS.gene034255:intron | 20.0% |
| !!! | CAACTTAATTTTACAAAATC+AGG | + | chr4.1:88738664-88738683 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTTTCAAAATC+AGG | + | chr4.1:88738413-88738432 | None:intergenic | 20.0% |
| !!! | CCAAAATAGTATATTTTCAT+CGG | + | chr4.1:88738879-88738898 | None:intergenic | 20.0% |
| !!! | GATTTTGAAAAATAAAGTTG+TGG | - | chr4.1:88738413-88738432 | MS.gene034255:intron | 20.0% |
| !!! | TAATTTTACAAAATCAGGTA+TGG | + | chr4.1:88738659-88738678 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAAAATCAGGCA+TGG | + | chr4.1:88738098-88738117 | None:intergenic | 20.0% |
| !!! | TAGAATATTTAGAGTTTGTT+TGG | - | chr4.1:88738493-88738512 | MS.gene034255:intron | 20.0% |
| !!! | TTACTTTTTTTAAGGTAGTT+TGG | - | chr4.1:88736933-88736952 | MS.gene034255:intron | 20.0% |
| !!! | TTTAGCTTTTTCCTAAATAT+CGG | - | chr4.1:88738458-88738477 | MS.gene034255:intron | 20.0% |
| !!! | TTTGGAATAACTTAAGAAAA+CGG | + | chr4.1:88737293-88737312 | None:intergenic | 20.0% |
| ! | AAACATCTTGTGTAAAAAAC+AGG | - | chr4.1:88737950-88737969 | MS.gene034255:intron | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | - | chr4.1:88737951-88737970 | MS.gene034255:intron | 25.0% |
| ! | AAGTTGTTTATCCAAAAACA+GGG | + | chr4.1:88737055-88737074 | None:intergenic | 25.0% |
| ! | AGTTGAAATTGAATGGATAA+TGG | - | chr4.1:88738598-88738617 | MS.gene034255:intron | 25.0% |
| ! | ATAAGCAATTGGAAATTGTT+TGG | + | chr4.1:88737311-88737330 | None:intergenic | 25.0% |
| ! | ATTCAGATTAAGACAATAGT+TGG | + | chr4.1:88738370-88738389 | None:intergenic | 25.0% |
| ! | ATTTGCCAATGAAAACATTA+AGG | - | chr4.1:88739450-88739469 | MS.gene034255:intron | 25.0% |
| ! | CTAAGATTCTGTTTGAATAA+AGG | + | chr4.1:88738017-88738036 | None:intergenic | 25.0% |
| ! | CTTGTAGACATGAATAATTA+GGG | - | chr4.1:88739338-88739357 | MS.gene034255:intron | 25.0% |
| ! | TAAGTTGTTTATCCAAAAAC+AGG | + | chr4.1:88737056-88737075 | None:intergenic | 25.0% |
| ! | TAGTTAGAACTAGAGTTAAA+GGG | + | chr4.1:88738962-88738981 | None:intergenic | 25.0% |
| ! | TAGTTTCTTCCTAATAATCA+GGG | - | chr4.1:88738711-88738730 | MS.gene034255:intron | 25.0% |
| ! | TCAAAATACGGTTATAAAAG+TGG | + | chr4.1:88738911-88738930 | None:intergenic | 25.0% |
| ! | TCTTGTAGACATGAATAATT+AGG | - | chr4.1:88739337-88739356 | MS.gene034255:intron | 25.0% |
| ! | TGATACCATTTGTTCAAATT+CGG | + | chr4.1:88739802-88739821 | None:intergenic | 25.0% |
| ! | TGTAAAGAATCAACATTAAG+AGG | + | chr4.1:88739935-88739954 | None:intergenic | 25.0% |
| ! | TTAATTGTCAATATCTCCAA+GGG | - | chr4.1:88739562-88739581 | MS.gene034255:intron | 25.0% |
| ! | TTAGTTAGAACTAGAGTTAA+AGG | + | chr4.1:88738963-88738982 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+TGG | + | chr4.1:88737335-88737354 | None:intergenic | 25.0% |
| !! | CCGATGAAAATATACTATTT+TGG | - | chr4.1:88738876-88738895 | MS.gene034255:intron | 25.0% |
| !! | GTCTTAATCTGAATGTTTTT+AGG | - | chr4.1:88738376-88738395 | MS.gene034255:intron | 25.0% |
| !! | TTCAACCTTAATGTTTTCAT+TGG | + | chr4.1:88739458-88739477 | None:intergenic | 25.0% |
| !! | TTTTCTTATCATGGTAGAAA+GGG | - | chr4.1:88738622-88738641 | MS.gene034255:intron | 25.0% |
| !!! | AACTTAACTTGCTATAGATA+TGG | - | chr4.1:88738303-88738322 | MS.gene034255:intron | 25.0% |
| !!! | CTTAATGTTGATTCTTTACA+GGG | - | chr4.1:88739935-88739954 | MS.gene034255:CDS | 25.0% |
| !!! | GATTTTAATTTCCCTGTTTT+TGG | - | chr4.1:88737041-88737060 | MS.gene034255:CDS | 25.0% |
| !!! | TCTTAATGTTGATTCTTTAC+AGG | - | chr4.1:88739934-88739953 | MS.gene034255:CDS | 25.0% |
| !!! | TTAGCTTTTTCCTAAAAATC+AGG | - | chr4.1:88737506-88737525 | MS.gene034255:intron | 25.0% |
| !!! | TTAGCTTTTTCCTAAATATC+GGG | - | chr4.1:88738459-88738478 | MS.gene034255:intron | 25.0% |
| !!! | TTGAAGACTTGATATTTTGA+TGG | - | chr4.1:88739154-88739173 | MS.gene034255:intron | 25.0% |
| AAAATACTTACAGGATTGGA+AGG | + | chr4.1:88736814-88736833 | None:intergenic | 30.0% | |
| AAATAAGCTCAAAACGGTTT+AGG | - | chr4.1:88737215-88737234 | MS.gene034255:CDS | 30.0% | |
| AAGTAAACTTACTCAAAGTC+AGG | + | chr4.1:88739697-88739716 | None:intergenic | 30.0% | |
| AATGGGAATTTGGTTGATTA+GGG | + | chr4.1:88736644-88736663 | None:intergenic | 30.0% | |
| AATTTCATTACGAAGAAGTC+TGG | + | chr4.1:88736767-88736786 | None:intergenic | 30.0% | |
| ACATCTTGTGTAAAAAACAG+GGG | - | chr4.1:88737952-88737971 | MS.gene034255:intron | 30.0% | |
| ACGTCTATTACAAAAGATGA+AGG | + | chr4.1:88737372-88737391 | None:intergenic | 30.0% | |
| AGTTATGAAACCCGATATTT+AGG | + | chr4.1:88738472-88738491 | None:intergenic | 30.0% | |
| AGTTTCTTCCTAATAATCAG+GGG | - | chr4.1:88738712-88738731 | MS.gene034255:intron | 30.0% | |
| ATGCGCTATTTAGTACAAAA+TGG | - | chr4.1:88739836-88739855 | MS.gene034255:intron | 30.0% | |
| ATTCAAACAGAGTCTTAAAG+TGG | - | chr4.1:88737864-88737883 | MS.gene034255:intron | 30.0% | |
| ATTCAGATGAAGACAATGTT+AGG | + | chr4.1:88737418-88737437 | None:intergenic | 30.0% | |
| CGTCTATTACAAAAGATGAA+GGG | + | chr4.1:88737371-88737390 | None:intergenic | 30.0% | |
| CTTAATTGTCAATATCTCCA+AGG | - | chr4.1:88739561-88739580 | MS.gene034255:intron | 30.0% | |
| CTTAATTGTGTAAACTGTTG+TGG | - | chr4.1:88738829-88738848 | MS.gene034255:intron | 30.0% | |
| CTTCTTCCTAAAATGTGTTT+AGG | - | chr4.1:88738066-88738085 | MS.gene034255:intron | 30.0% | |
| CTTGGAGATATTGACAATTA+AGG | + | chr4.1:88739563-88739582 | None:intergenic | 30.0% | |
| CTTTGTTCTTGTTAGAATCA+TGG | - | chr4.1:88736894-88736913 | MS.gene034255:intron | 30.0% | |
| GTAGTTTCTTCCTAATAATC+AGG | - | chr4.1:88738710-88738729 | MS.gene034255:intron | 30.0% | |
| TATAGCCGAATTTGAACAAA+TGG | - | chr4.1:88739794-88739813 | MS.gene034255:intron | 30.0% | |
| TATCTACTGGTATAAGCAAT+TGG | + | chr4.1:88737322-88737341 | None:intergenic | 30.0% | |
| TCTCAGAAGTTGAAATTGAA+TGG | - | chr4.1:88738591-88738610 | MS.gene034255:intron | 30.0% | |
| TTACGATTTCTTGGAAGTAA+GGG | - | chr4.1:88739986-88740005 | MS.gene034255:CDS | 30.0% | |
| TTCAAACAGAGTCTTAAAGT+GGG | - | chr4.1:88737865-88737884 | MS.gene034255:intron | 30.0% | |
| TTTACGATTTCTTGGAAGTA+AGG | - | chr4.1:88739985-88740004 | MS.gene034255:CDS | 30.0% | |
| TTTGTTTGGATAAACTGTTG+TGG | - | chr4.1:88738507-88738526 | MS.gene034255:intron | 30.0% | |
| ! | CAAAATATTTGGAGCTAGTT+TGG | - | chr4.1:88737540-88737559 | MS.gene034255:intron | 30.0% |
| ! | CCTAGAATCTAAAACAAACT+TGG | - | chr4.1:88739102-88739121 | MS.gene034255:intron | 30.0% |
| ! | CTTTTCTTATCATGGTAGAA+AGG | - | chr4.1:88738621-88738640 | MS.gene034255:intron | 30.0% |
| ! | CTTTTTATCACTATACTGTC+CGG | + | chr4.1:88739625-88739644 | None:intergenic | 30.0% |
| ! | TACAAAATGGTGTCAAATAG+AGG | - | chr4.1:88739849-88739868 | MS.gene034255:intron | 30.0% |
| ! | TTTGGTTGATTAGGGTTTTT+CGG | + | chr4.1:88736636-88736655 | None:intergenic | 30.0% |
| ! | TTTTTACACAAGATGTTTCC+AGG | + | chr4.1:88737948-88737967 | None:intergenic | 30.0% |
| !! | GATAATGGCTTTTCTTATCA+TGG | - | chr4.1:88738613-88738632 | MS.gene034255:intron | 30.0% |
| !! | GGTTTTTGTTATGGGAAAAT+GGG | - | chr4.1:88736858-88736877 | MS.gene034255:intron | 30.0% |
| !! | TCTCTTGTTGTTTGTGTAAT+GGG | - | chr4.1:88736837-88736856 | MS.gene034255:intron | 30.0% |
| !! | TTCTCTTGTTGTTTGTGTAA+TGG | - | chr4.1:88736836-88736855 | MS.gene034255:intron | 30.0% |
| !!! | AGCTTTTTTCAGTTGGATTT+TGG | - | chr4.1:88739305-88739324 | MS.gene034255:intron | 30.0% |
| !!! | ATTCTCTAGCTTTTTTCAGT+TGG | - | chr4.1:88739298-88739317 | MS.gene034255:intron | 30.0% |
| !!! | CCAAGTTTGTTTTAGATTCT+AGG | + | chr4.1:88739105-88739124 | None:intergenic | 30.0% |
| !!! | GTGTAATGGGTTTTTGTTAT+GGG | - | chr4.1:88736850-88736869 | MS.gene034255:intron | 30.0% |
| !!! | TGTGTAATGGGTTTTTGTTA+TGG | - | chr4.1:88736849-88736868 | MS.gene034255:intron | 30.0% |
| AAGGAGAAAACAGAGATCAT+AGG | - | chr4.1:88740056-88740075 | MS.gene034255:CDS | 35.0% | |
| AGAAAACAGAGATCATAGGA+TGG | - | chr4.1:88740060-88740079 | MS.gene034255:CDS | 35.0% | |
| ATAAGCTAAACTCTCTTGGA+TGG | - | chr4.1:88736985-88737004 | MS.gene034255:intron | 35.0% | |
| CAGGTTTCATAGCTACAAAA+TGG | - | chr4.1:88738166-88738185 | MS.gene034255:intron | 35.0% | |
| CGGACAGTATAGTGATAAAA+AGG | - | chr4.1:88739623-88739642 | MS.gene034255:intron | 35.0% | |
| CGTCGTAGCTACAAAATATT+TGG | - | chr4.1:88737529-88737548 | MS.gene034255:intron | 35.0% | |
| CTTTGCAACTAGTATCGTTT+GGG | - | chr4.1:88739272-88739291 | MS.gene034255:intron | 35.0% | |
| GAATGGGAATTTGGTTGATT+AGG | + | chr4.1:88736645-88736664 | None:intergenic | 35.0% | |
| GGATAGTCTTTACGATTTCT+TGG | - | chr4.1:88739977-88739996 | MS.gene034255:CDS | 35.0% | |
| GTAAACACAAACAGTGCATT+TGG | + | chr4.1:88739134-88739153 | None:intergenic | 35.0% | |
| TACGATTTCTTGGAAGTAAG+GGG | - | chr4.1:88739987-88740006 | MS.gene034255:CDS | 35.0% | |
| TAGCTATGAAACCTGATTGT+AGG | + | chr4.1:88738161-88738180 | None:intergenic | 35.0% | |
| TATCTACCAACATAAGCACT+TGG | + | chr4.1:88737739-88737758 | None:intergenic | 35.0% | |
| TCTTTGCAACTAGTATCGTT+TGG | - | chr4.1:88739271-88739290 | MS.gene034255:intron | 35.0% | |
| TTATCATGGTAGAAAGGGTA+AGG | - | chr4.1:88738627-88738646 | MS.gene034255:intron | 35.0% | |
| TTGCATAAGCTAAACTCTCT+TGG | - | chr4.1:88736981-88737000 | MS.gene034255:intron | 35.0% | |
| TTGTACTAAATAGCGCATCA+CGG | + | chr4.1:88739834-88739853 | None:intergenic | 35.0% | |
| TTTGCAACTAGTATCGTTTG+GGG | - | chr4.1:88739273-88739292 | MS.gene034255:intron | 35.0% | |
| ! | ATAAGCACTTGGAGACTTTT+TGG | + | chr4.1:88737728-88737747 | None:intergenic | 35.0% |
| ! | CATAGTCGTTGTTGTTGAAT+GGG | + | chr4.1:88736661-88736680 | None:intergenic | 35.0% |
| ! | CTAGTTTGTGTAAACTGTTG+TGG | - | chr4.1:88738758-88738777 | MS.gene034255:intron | 35.0% |
| ! | GAAGCTCCTAAACACATTTT+AGG | + | chr4.1:88738075-88738094 | None:intergenic | 35.0% |
| ! | GTTGATTCTTTACAGGGAAT+TGG | - | chr4.1:88739941-88739960 | MS.gene034255:CDS | 35.0% |
| ! | GTTGTTGTTGAATGGGAATT+TGG | + | chr4.1:88736654-88736673 | None:intergenic | 35.0% |
| ! | TACAAAATGGTTAGCTAGTG+CGG | - | chr4.1:88738179-88738198 | MS.gene034255:intron | 35.0% |
| ! | TTTAGCTTCTTCCTACAATC+AGG | - | chr4.1:88738147-88738166 | MS.gene034255:intron | 35.0% |
| !! | GCTTTAGGATAAAGCTACAT+TGG | - | chr4.1:88737477-88737496 | MS.gene034255:intron | 35.0% |
| !! | GGGTTTTTGTTATGGGAAAA+TGG | - | chr4.1:88736857-88736876 | MS.gene034255:intron | 35.0% |
| AACAGAGATCATAGGATGGA+TGG | - | chr4.1:88740064-88740083 | MS.gene034255:CDS | 40.0% | |
| AAGTCTCCAAGTGCTTATGT+TGG | - | chr4.1:88737730-88737749 | MS.gene034255:intron | 40.0% | |
| AATACACCAATTAGTGCACC+GGG | - | chr4.1:88737987-88738006 | MS.gene034255:intron | 40.0% | |
| AATGAACCGAACTTGTCAGT+AGG | + | chr4.1:88739382-88739401 | None:intergenic | 40.0% | |
| CAATACACCAATTAGTGCAC+CGG | - | chr4.1:88737986-88738005 | MS.gene034255:intron | 40.0% | |
| CTAGTTTGGAAAAACTGAGG+TGG | - | chr4.1:88737554-88737573 | MS.gene034255:intron | 40.0% | |
| CTGGAGATGATTTGAGAAGA+AGG | + | chr4.1:88736694-88736713 | None:intergenic | 40.0% | |
| CTTGTGTAAAAAACAGGGGA+AGG | - | chr4.1:88737956-88737975 | MS.gene034255:intron | 40.0% | |
| GAAAGCTTCTTTGCGCATTT+GGG | + | chr4.1:88736731-88736750 | None:intergenic | 40.0% | |
| GAGATGATTTGAGAAGAAGG+AGG | + | chr4.1:88736691-88736710 | None:intergenic | 40.0% | |
| GCATCAGTACATGAAACACA+AGG | - | chr4.1:88740037-88740056 | MS.gene034255:CDS | 40.0% | |
| TGACAAGTTCGGTTCATTTG+TGG | - | chr4.1:88739384-88739403 | MS.gene034255:intron | 40.0% | |
| TTCCTAATAATCAGGGGTCA+TGG | - | chr4.1:88738718-88738737 | MS.gene034255:intron | 40.0% | |
| TTGGGAGATGTAAGTTCTTC+TGG | + | chr4.1:88736713-88736732 | None:intergenic | 40.0% | |
| ! | GAGCTAGTTTGGAAAAACTG+AGG | - | chr4.1:88737551-88737570 | MS.gene034255:intron | 40.0% |
| ! | GCATAGTCGTTGTTGTTGAA+TGG | + | chr4.1:88736662-88736681 | None:intergenic | 40.0% |
| !! | TTAGGGTTTTTCGGAGAGAA+CGG | + | chr4.1:88736627-88736646 | None:intergenic | 40.0% |
| AACAGCTCCATCAAACATGG+TGG | + | chr4.1:88739482-88739501 | None:intergenic | 45.0% | |
| AATGTAATCCATCGCTCACC+GGG | + | chr4.1:88739421-88739440 | None:intergenic | 45.0% | |
| AGCCATGACCCCTGATTATT+AGG | + | chr4.1:88738723-88738742 | None:intergenic | 45.0% | |
| AGGAACAGCTCCATCAAACA+TGG | + | chr4.1:88739485-88739504 | None:intergenic | 45.0% | |
| ATGCGCAAAGAAGCTTTCGA+AGG | - | chr4.1:88736733-88736752 | MS.gene034255:CDS | 45.0% | |
| CAAGTTCGGTTCATTTGTGG+TGG | - | chr4.1:88739387-88739406 | MS.gene034255:intron | 45.0% | |
| CAATGTAATCCATCGCTCAC+CGG | + | chr4.1:88739422-88739441 | None:intergenic | 45.0% | |
| CGAAAGCTTCTTTGCGCATT+TGG | + | chr4.1:88736732-88736751 | None:intergenic | 45.0% | |
| GAGTCTTAAAGTGGGAACCT+TGG | - | chr4.1:88737873-88737892 | MS.gene034255:intron | 45.0% | |
| GATCATAGGATGGATGGAGA+AGG | - | chr4.1:88740070-88740089 | MS.gene034255:CDS | 45.0% | |
| GGAATTGGATGATGAGTTGC+AGG | - | chr4.1:88739956-88739975 | MS.gene034255:CDS | 45.0% | |
| GTCAATATCTCCAAGGGAGA+TGG | - | chr4.1:88739568-88739587 | MS.gene034255:intron | 45.0% | |
| GTTCCTGCTCCGAAAAAAAG+CGG | - | chr4.1:88739499-88739518 | MS.gene034255:intron | 45.0% | |
| GTTGAAGCCACCATGTTTGA+TGG | - | chr4.1:88739472-88739491 | MS.gene034255:intron | 45.0% | |
| TACAGGATTGGAAGGAGAAG+AGG | + | chr4.1:88736806-88736825 | None:intergenic | 45.0% | |
| TCAAAGTCAGGACCAGCATA+GGG | + | chr4.1:88739685-88739704 | None:intergenic | 45.0% | |
| TGGAAATCATGTGCTCTGCT+TGG | - | chr4.1:88739599-88739618 | MS.gene034255:intron | 45.0% | |
| TGTTTGAATAAAGGGCAGCC+CGG | + | chr4.1:88738008-88738027 | None:intergenic | 45.0% | |
| TTGCAGCCTACTGACAAGTT+CGG | - | chr4.1:88739373-88739392 | MS.gene034255:intron | 45.0% | |
| ! | AGCTACGACGCCTGATTTTT+AGG | + | chr4.1:88737519-88737538 | None:intergenic | 45.0% |
| ! | CTTGTTGTCACGTGACTGAA+AGG | - | chr4.1:88737908-88737927 | MS.gene034255:intron | 45.0% |
| ! | TTCGGTTCATTTGTGGTGGA+TGG | - | chr4.1:88739391-88739410 | MS.gene034255:intron | 45.0% |
| AATCATGTGCTCTGCTTGGC+CGG | - | chr4.1:88739603-88739622 | MS.gene034255:intron | 50.0% | |
| ACAAGTTTACCGTTGCGCCA+AGG | + | chr4.1:88737893-88737912 | None:intergenic | 50.0% | |
| CTCAAAGTCAGGACCAGCAT+AGG | + | chr4.1:88739686-88739705 | None:intergenic | 50.0% | |
| TCCGAAAAAAAGCGGTGGTG+TGG | - | chr4.1:88739507-88739526 | MS.gene034255:intron | 50.0% | |
| !!! | GCCACACCACCGCTTTTTTT+CGG | + | chr4.1:88739511-88739530 | None:intergenic | 50.0% |
| AAGGTCACGAGGTCAAGTCC+TGG | - | chr4.1:88737927-88737946 | MS.gene034255:intron | 55.0% | |
| AAGTGGGAACCTTGGCGCAA+CGG | - | chr4.1:88737881-88737900 | MS.gene034255:intron | 55.0% | |
| ATGACAGCTGAGCCCTATGC+TGG | - | chr4.1:88739670-88739689 | MS.gene034255:intron | 55.0% | |
| CAAGGGAGATGGTCATGTGC+TGG | - | chr4.1:88739579-88739598 | MS.gene034255:intron | 55.0% | |
| CACGTGACTGAAAGGTCACG+AGG | - | chr4.1:88737916-88737935 | MS.gene034255:intron | 55.0% | |
| CAGCACATGACCATCTCCCT+TGG | + | chr4.1:88739581-88739600 | None:intergenic | 55.0% | |
| CCTGCTCCGAAAAAAAGCGG+TGG | - | chr4.1:88739502-88739521 | MS.gene034255:intron | 55.0% | |
| TAATCCATCGCTCACCGGGT+CGG | + | chr4.1:88739417-88739436 | None:intergenic | 55.0% | |
| !!! | CCACCGCTTTTTTTCGGAGC+AGG | + | chr4.1:88739505-88739524 | None:intergenic | 55.0% |
| !! | TTTGTGGTGGATGGCCGACC+CGG | - | chr4.1:88739400-88739419 | MS.gene034255:intron | 60.0% |
| GGGCAGCCCGGTGCACTAAT+TGG | + | chr4.1:88737996-88738015 | None:intergenic | 65.0% | |
| ATGGCCGACCCGGTGAGCGA+TGG | - | chr4.1:88739410-88739429 | MS.gene034255:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 88736610 | 88740118 | 88736610 | ID=MS.gene034255 |
| chr4.1 | mRNA | 88736610 | 88740118 | 88736610 | ID=MS.gene034255.t1;Parent=MS.gene034255 |
| chr4.1 | exon | 88739906 | 88740118 | 88739906 | ID=MS.gene034255.t1.exon1;Parent=MS.gene034255.t1 |
| chr4.1 | CDS | 88739906 | 88740118 | 88739906 | ID=cds.MS.gene034255.t1;Parent=MS.gene034255.t1 |
| chr4.1 | exon | 88737024 | 88737349 | 88737024 | ID=MS.gene034255.t1.exon2;Parent=MS.gene034255.t1 |
| chr4.1 | CDS | 88737024 | 88737349 | 88737024 | ID=cds.MS.gene034255.t1;Parent=MS.gene034255.t1 |
| chr4.1 | exon | 88736610 | 88736772 | 88736610 | ID=MS.gene034255.t1.exon3;Parent=MS.gene034255.t1 |
| chr4.1 | CDS | 88736610 | 88736772 | 88736610 | ID=cds.MS.gene034255.t1;Parent=MS.gene034255.t1 |
| Gene Sequence |
| Protein sequence |
