AlfalfaGEDB | MS.gene29760

M. sativa cultivar XinJiangDaYe / MS.gene29760

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787 GO:0016788
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29760.t1	XP_024639459.1	96.2	290	11	0	1	290	1	290	3.70E-159	570.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29760.t1	Q67ZI9	58.2	285	115	1	8	292	10	290	1.3e-96	354.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29760.t1	G7K7G1	96.9	288	9	0	1	288	1	288	3.5e-159	570.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049681	MS.gene29760	0.815467	9.11E-52	-1.69E-46
MS.gene050301	MS.gene29760	0.80181	7.55E-49	-1.69E-46
MS.gene051255	MS.gene29760	0.804016	2.64E-49	-1.69E-46
MS.gene051860	MS.gene29760	0.809021	2.32E-50	-1.69E-46
MS.gene052207	MS.gene29760	0.813413	2.59E-51	-1.69E-46
MS.gene053836	MS.gene29760	0.807378	5.20E-50	-1.69E-46
MS.gene054010	MS.gene29760	0.807027	6.18E-50	-1.69E-46
MS.gene054011	MS.gene29760	0.809554	1.79E-50	-1.69E-46
MS.gene054012	MS.gene29760	0.802084	6.64E-49	-1.69E-46
MS.gene054013	MS.gene29760	0.808166	3.54E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29760.t1	MTR_5g084750	96.540	289	10	0	1	289	1	289	0.0	584
MS.gene29760.t1	MTR_5g084770	78.947	285	59	1	6	289	4	288	6.70e-171	478
MS.gene29760.t1	MTR_3g464730	60.357	280	110	1	8	286	6	285	2.42e-122	355
MS.gene29760.t1	MTR_5g084790	59.925	267	107	0	23	289	25	291	7.23e-122	353
MS.gene29760.t1	MTR_3g082830	59.023	266	109	0	28	293	36	301	1.38e-118	345
MS.gene29760.t1	MTR_3g114120	43.396	265	150	0	28	292	45	309	1.13e-77	241
MS.gene29760.t1	MTR_8g014910	41.577	279	160	1	11	286	10	288	1.76e-76	238
MS.gene29760.t1	MTR_2g100620	44.788	259	143	0	28	286	29	287	1.05e-75	236
MS.gene29760.t1	MTR_1g025780	42.481	266	152	1	28	293	39	303	1.80e-75	235
MS.gene29760.t1	MTR_8g075220	44.280	271	145	3	25	289	34	304	6.46e-75	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29760.t1	AT2G42990	58.246	285	115	1	8	292	10	290	1.02e-124	361
MS.gene29760.t1	AT2G04570	57.679	293	122	1	1	293	1	291	1.02e-121	353
MS.gene29760.t1	AT4G26790	60.311	257	102	0	29	285	28	284	7.19e-116	338
MS.gene29760.t1	AT4G26790	60.311	257	102	0	29	285	28	284	7.19e-116	338
MS.gene29760.t1	AT3G43550	40.345	290	168	3	1	289	1	286	4.38e-76	234
MS.gene29760.t1	AT1G59406	40.550	291	166	4	1	289	1	286	1.07e-74	233
MS.gene29760.t1	AT1G59030	40.550	291	166	4	1	289	1	286	1.07e-74	233
MS.gene29760.t1	AT1G58725	40.550	291	166	4	1	289	1	286	1.07e-74	233
MS.gene29760.t1	AT1G58520	42.966	263	145	3	28	289	28	286	5.49e-74	231
MS.gene29760.t1	AT1G58525	42.966	263	145	3	28	289	28	286	5.49e-74	231

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Find 71 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGATATTGTGATA+CGG	0.587133	5.3:-68526231	None:intergenic
AAAGCCTCAGCAATAAAGTC+CGG	0.583796	5.3:-68524065	None:intergenic
AAATCATCGATGGTATAAGC+AGG	0.559336	5.3:-68524122	None:intergenic
AACTCTATTTCCTTCCATAG+TGG	0.515309	5.3:-68526059	None:intergenic
AAGGTGGCCGCCCCACCGGA+CGG	0.515128	5.3:+68524021	MS.gene29760:CDS
AATTACACTCACTTGGTGCT+AGG	0.542984	5.3:+68526285	MS.gene29760:CDS
ACAAATGGGCATTAAATCAA+AGG	0.571449	5.3:-68527548	None:intergenic
ACCACAATTGAAGGCTTTGT+CGG	0.491914	5.3:+68526466	MS.gene29760:CDS
ACCAGTGACAAAATCATCGA+TGG	0.603756	5.3:-68524132	None:intergenic
ACCGTTACAAAACCGTCCGG+TGG	0.576280	5.3:-68524033	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGGAAATGGAGTAGA+TGG	-	chr5.3:68524809-68524828	None:intergenic	30.0%
AAAGTGAAAATCACACCTTA+AGG	+	chr5.3:68525625-68525644	MS.gene29760:intron	30.0%
AACAATGATATCAAAGTCGA+TGG	-	chr5.3:68527057-68527076	None:intergenic	30.0%
AACATATACATATCCATGGA+TGG	-	chr5.3:68526907-68526926	None:intergenic	30.0%
AAGCAGTTAAATACACCTTA+AGG	-	chr5.3:68525230-68525249	None:intergenic	30.0%
AATTCACTCATTGAAACCTA+CGG	+	chr5.3:68524913-68524932	MS.gene29760:intron	30.0%
ACACCTTCATAAAAGTAAGT+TGG	-	chr5.3:68525583-68525602	None:intergenic	30.0%
ACATTTGATAAGGAGATTGT+TGG	-	chr5.3:68526880-68526899	None:intergenic	30.0%
ACGTTATTCATGACAACTAA+TGG	+	chr5.3:68524972-68524991	MS.gene29760:intron	30.0%
AGGAAACATATACATATCCA+TGG	-	chr5.3:68526911-68526930	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	68523834	68527559	68523834	ID=MS.gene29760
chr5.3	mRNA	68523834	68527559	68523834	ID=MS.gene29760.t1;Parent=MS.gene29760
chr5.3	exon	68523834	68524208	68523834	ID=MS.gene29760.t1.exon1;Parent=MS.gene29760.t1
chr5.3	CDS	68523834	68524208	68523834	ID=cds.MS.gene29760.t1;Parent=MS.gene29760.t1
chr5.3	exon	68526050	68526539	68526050	ID=MS.gene29760.t1.exon2;Parent=MS.gene29760.t1
chr5.3	CDS	68526050	68526539	68526050	ID=cds.MS.gene29760.t1;Parent=MS.gene29760.t1
chr5.3	exon	68527489	68527559	68527489	ID=MS.gene29760.t1.exon3;Parent=MS.gene29760.t1
chr5.3	CDS	68527489	68527559	68527489	ID=cds.MS.gene29760.t1;Parent=MS.gene29760.t1

Gene Sequence

>MS.gene29760

ATGAAGCATATATGCATATGCATAGCATGGTTAATATTGATAACCCAAATTATCATTGTGACTTGCAAGACTAGAAATCATGTACCAGCAGTAATTGTATTTGGTGATTCTTCTGTGGATTCTGGAAACAATAATAAGATAGCTACACTTCTCAAGAGTAATTTTAAACCTTACGGCCGTGACTTCGAAGGTGGCCGCCCCACCGGACGGTTTTGTAACGGTCGTACTCCACCGGACTTTATTGCTGAGGCTTTCGGCGTTAAGCGCAATATACCGGCATACTTGGATCCTGCTTATACCATCGATGATTTTGTCACTGGTGTTTGCTTTGCTTCTGCTGGAACTGGATATGATAATGCAACTTCCGATGTACTAGTAAGTTCTTCATTTGTGTTGGGTTGTGTTCTCTCTATTTTTTTTTTTTTTGCGGAACAATGTGTCCATTTTCAATTTAATACTACCCTTAAATCAAATTTCACATTGTCATCAGTCATTACCTGCATTCAAGGAATTATTAGAGCCCAAACACAAATTAATGGAAAACTAAAAAAAAAAGTTGATAACAATATCAAATTAATTGTCAATTGACATTGTTTTACAAGTTTATCCTTATAAAGATTTATGTTTTACTCATAATATTTATTACAAATTGCATGAAAATATATAACTTAATTAGAGATATGTTTGTAACGAAATAACTTATGTAGTTAAAAATATAAATAAAGGGAGCCTATAGAAAGTACAAGAAAGGATATAAATATGTCCTATTTTTAAGCACATGGGTAGTAATTGTAAAAAAAAGAGGACATAGGTAGTAGTATATTTTTTTTATTTTTATTTTTACAAGATAAATTTGGTTTCATAATATTATGTCCTATTTGGTTTGACACAATTATTAGCATTTTGATTTTGAAACTCAATAAAATATCCAATATGGTTCCTTTGTCAAGTTCCTTTCACTCTCAAATTTGACCATCTACTCCATTTCCTTTTTTTTGGGCAATCCACCTATCTCCTAATGTTTCTCTACCTGTCTATCTACCAATTTTTTAATATCTTTCTATCATATATGTGATGAGAATTCACTCATTGAAACCTACGGACAAGCAAGGTTGTTTAACTAAGAAGGAAATTTAAGACGTTATTCATGACAACTAATGGAGTGCCACCTTTAGACATGACAAGGTGATACCATGTGTAGTGTTGAGAGAGACAAAGTTATAGAAAAGTATTATTATGGTTAAAAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGGATTTGCTAGAACACACCCACTAGTTTTTATGTGGGAGTGTTTTAGCAAGCTACACCTTAAGGTGTATTTAACTGCTTTTTAGTTATAACTTGCTAAAACACACCTTCTAAAAAATAAATGGGTGTATCCTAGCAAATGCCTATAGGAGTTGCTAACATACACCCACTTATTTTTTAGAAGCTGTGTTTTAGCAACATTCACCTTAAGGTGTATTTAACAACTTTTTAGTTATATCTTTGCTAAAACACACCTTAATAAAAACTAGTGGGTGTATCCTAGCAAACCCCATATATATATATATATATATATATATATATATATATATATATATATAGGGTTATGATAGAAGACACCTTTTGTGAAGGTGTCTTTTATCAAGTTACTCTATGAGCTTTTGCGAAAAGACACCAACTTACTTTTATGAAGGTGTCTTTTAGCAAAGTTATAACTAAAAAGTGAAAATCACACCTTAAGGTGTTGCTTGATAAAAGACACCACCAAAGGGTGTCTTGTAACATAACCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGTGCTGATTTCTAACCATCGAAGTATGTGATATGACAATTTCCTTTTCAATGCCAACATATTAAAATTAGCGTAAGTTAATATTTTTTTGTTTCAAATATAATATAATTAAAAAAAAATTATTTCTCTTTTATTTTAATTGTGGATGGTTTTTTATTTTTGAAGGAATTTGTGGATGGTTGTTGCTAAAGTGGTGACTTATTTTATTTTCATAATAAACTAATTAATTAATTAACATTGGATGTCAACTTTTCACAGAATGTGATACCACTATGGAAGGAAATAGAGTTCTTCAAAGAATACCAAGAAAAATTGAGAGCCCATGTTGGTAAAAAGAAGGCAAATGAAATCATAAGTGAGGCATTATACCTAATAAGCTTAGGAACAAATGATTTCCTTGAAAATTACTATATTTTCCCAACAAGACAACTTCATTTCACCGTATCACAATATCAAGATTTTCTAGTGGATATTGCAGAGGATTTCGTTAGGAAATTACACTCACTTGGTGCTAGGAAATTATCCATAACTGGTCTTATTCCTATGGGTTGTCTCCCATTAGAAAGGGCTATAAATATTTTTGGTGACCATGCTTGCAATGAAAAATACAATAGAGTGGCTTTGCAATTTAATGCCAAGTTGGAGAATATGATATCAAAGCTAAATAAGGAGCTACCACAATTGAAGGCTTTGTCGGCAAATGCCTATGAGATTGTCAATGATATCATTACAAGACCTTCCTTCTATGGTAAGTTTTCTTTATTTGTTCTCACAACATATATATCTATCTTATGTGATACATCTTATTGTGGTATTTTATGTGTTGCACATCTCTTTCGTTGGCTATGACTATAACACAAAATATACAAACACACACATAGGTTCAAAAATAAAATAAAATTGATGTTCATCTTGTTGGGTCATGGGGATGGGGTCATCACACATGGTTTTAAGCAACTACATAAGTGAAATTGATACCACATTTTCATCCAAAATGTATTAAGTATACTGGTCATGTCACTTCTATGTTGTTCAACATCCACTTTTTCTTTTAACATAAGACTCTTATTCACACTTGATATATACCAACAATCTCCTTATCAAATGTTAGTCCATCCATGGATATGTATATGTTTCCTCCCAAACGAAAACTTTTTCATTCACATACACTTGGATCGTCGTCTGTCGTTGACACTGCATCAACATGACACGCCGTCTCACCACCATTGTTAAGAAGACTTTCGATACAAGAGTTGGTTGAACCATCGACTTTGATATCATTGTTAGGTCATGAGGAGGTCTGGTATCATCAATATTTACTCGTAGTCTACACTAACATTCCATTGATATGCTAGCTCTCCTTGAATCTTAAGAATGTCTTTGGTTATGCGGTGGGTGAATTGATTTTGGTTAAAATTGATTTCGACTAAAAATAATTTGTGTTTGGATACAATTATGTAAAAGTAAGTTGAATTAAATTAAAATCAATTCTAGAATCAAAAACTACAAATCTTATCTTCAAATAGAATCAATTTTAAAGACAAAATGATCAATTATTCGCGATAGTATTCATAATCAATTTTCTTTTAGTACAATATTCAGAATCAATTTTACACGTCCAACATCCTTATGGTACCAAACATATCCAATTTAATTGCACAATCAATGTAGCACAGCTATCCTTTGGATACATACAGCTAATCATATAGTGCCTGAAATTCCGGCAGAGATGATATCCAGTAGATCAGGGGTAGGACCTTTGATTTAA

Protein sequence

>MS.gene29760.t1

MKHICICIAWLILITQIIIVTCKTRNHVPAVIVFGDSSVDSGNNNKIATLLKSNFKPYGRDFEGGRPTGRFCNGRTPPDFIAEAFGVKRNIPAYLDPAYTIDDFVTGVCFASAGTGYDNATSDVLNVIPLWKEIEFFKEYQEKLRAHVGKKKANEIISEALYLISLGTNDFLENYYIFPTRQLHFTVSQYQDFLVDIAEDFVRKLHSLGARKLSITGLIPMGCLPLERAINIFGDHACNEKYNRVALQFNAKLENMISKLNKELPQLKALSANAYEIVNDIITRPSFYANHIVPEIPAEMISSRSGVGPLI