Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29854.t1 | XP_013460836.1 | 90.2 | 660 | 12 | 2 | 1 | 607 | 1 | 660 | 0.00E+00 | 1122.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29854.t1 | P53393 | 71.7 | 633 | 126 | 3 | 27 | 606 | 10 | 642 | 2.5e-248 | 859.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29854.t1 | A0A072V9P8 | 90.2 | 660 | 12 | 2 | 1 | 607 | 1 | 660 | 0.0e+00 | 1122.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049488 | MS.gene29854 | 0.817529 | 3.15E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene29854 | 0.824851 | 6.45E-54 | -1.69E-46 |
| MS.gene052999 | MS.gene29854 | 0.823441 | 1.38E-53 | -1.69E-46 |
| MS.gene053912 | MS.gene29854 | 0.829211 | 5.84E-55 | -1.69E-46 |
| MS.gene055741 | MS.gene29854 | 0.800143 | 1.66E-48 | -1.69E-46 |
| MS.gene055909 | MS.gene29854 | 0.820208 | 7.74E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene29854 | 0.82125 | 4.46E-53 | -1.69E-46 |
| MS.gene056514 | MS.gene29854 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene29854 | 0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene057734 | MS.gene29854 | 0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene29854 | 0.805646 | 1.21E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene29854 | 0.810116 | 1.35E-50 | -1.69E-46 |
| MS.gene057888 | MS.gene29854 | 0.806439 | 8.22E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene29854 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene29854 | 0.808355 | 3.23E-50 | -1.69E-46 |
| MS.gene059517 | MS.gene29854 | 0.813896 | 2.03E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene29854 | 0.824211 | 9.12E-54 | -1.69E-46 |
| MS.gene060485 | MS.gene29854 | 0.823132 | 1.63E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29854.t1 | MTR_3g073730 | 90.152 | 660 | 12 | 2 | 1 | 607 | 1 | 660 | 0.0 | 1190 |
| MS.gene29854.t1 | MTR_5g061860 | 70.370 | 648 | 129 | 5 | 19 | 605 | 7 | 652 | 0.0 | 904 |
| MS.gene29854.t1 | MTR_5g061860 | 69.343 | 548 | 107 | 4 | 19 | 505 | 7 | 554 | 0.0 | 744 |
| MS.gene29854.t1 | MTR_3g087740 | 58.243 | 649 | 206 | 7 | 15 | 604 | 12 | 654 | 0.0 | 736 |
| MS.gene29854.t1 | MTR_5g061880 | 55.204 | 538 | 230 | 4 | 72 | 607 | 127 | 655 | 0.0 | 612 |
| MS.gene29854.t1 | MTR_3g087730 | 48.426 | 667 | 267 | 12 | 2 | 605 | 6 | 658 | 0.0 | 590 |
| MS.gene29854.t1 | MTR_3g073780 | 55.094 | 530 | 228 | 4 | 72 | 599 | 130 | 651 | 0.0 | 586 |
| MS.gene29854.t1 | MTR_2g008470 | 53.143 | 525 | 238 | 4 | 72 | 596 | 132 | 648 | 0.0 | 546 |
| MS.gene29854.t1 | MTR_2g008470 | 53.143 | 525 | 238 | 4 | 72 | 596 | 151 | 667 | 0.0 | 545 |
| MS.gene29854.t1 | MTR_3g073780 | 56.867 | 466 | 191 | 4 | 72 | 535 | 130 | 587 | 0.0 | 531 |
| MS.gene29854.t1 | MTR_3g073780 | 58.257 | 436 | 174 | 3 | 72 | 505 | 130 | 559 | 7.16e-176 | 510 |
| MS.gene29854.t1 | MTR_7g095430 | 48.864 | 528 | 262 | 3 | 72 | 599 | 115 | 634 | 9.47e-174 | 508 |
| MS.gene29854.t1 | MTR_2g102243 | 47.672 | 537 | 271 | 4 | 72 | 607 | 120 | 647 | 8.21e-167 | 490 |
| MS.gene29854.t1 | MTR_1g071530 | 47.637 | 529 | 267 | 4 | 72 | 599 | 118 | 637 | 2.78e-165 | 487 |
| MS.gene29854.t1 | MTR_4g084640 | 45.336 | 536 | 283 | 4 | 72 | 607 | 119 | 644 | 3.49e-159 | 471 |
| MS.gene29854.t1 | MTR_4g011970 | 46.828 | 536 | 277 | 3 | 72 | 607 | 127 | 654 | 8.04e-159 | 470 |
| MS.gene29854.t1 | MTR_4g084620 | 45.009 | 531 | 281 | 4 | 72 | 601 | 115 | 635 | 1.59e-158 | 469 |
| MS.gene29854.t1 | MTR_7g095430 | 49.351 | 462 | 226 | 3 | 72 | 533 | 115 | 568 | 4.31e-151 | 447 |
| MS.gene29854.t1 | MTR_2g102243 | 49.676 | 463 | 223 | 4 | 72 | 533 | 120 | 573 | 7.34e-151 | 447 |
| MS.gene29854.t1 | MTR_6g086170 | 41.777 | 529 | 294 | 6 | 72 | 599 | 108 | 623 | 3.36e-142 | 427 |
| MS.gene29854.t1 | MTR_7g022870 | 36.754 | 536 | 308 | 11 | 75 | 602 | 127 | 639 | 3.45e-98 | 315 |
| MS.gene29854.t1 | MTR_7g022870 | 36.774 | 465 | 271 | 10 | 75 | 535 | 127 | 572 | 1.32e-82 | 270 |
| MS.gene29854.t1 | MTR_6g024420 | 35.971 | 139 | 71 | 3 | 182 | 314 | 40 | 166 | 5.33e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29854.t1 | AT5G10180 | 56.515 | 637 | 212 | 5 | 26 | 603 | 46 | 676 | 0.0 | 710 |
| MS.gene29854.t1 | AT1G77990 | 56.899 | 645 | 201 | 6 | 20 | 597 | 30 | 664 | 0.0 | 697 |
| MS.gene29854.t1 | AT1G22150 | 55.514 | 535 | 230 | 4 | 72 | 606 | 128 | 654 | 0.0 | 578 |
| MS.gene29854.t1 | AT1G22150 | 55.514 | 535 | 230 | 4 | 72 | 606 | 128 | 654 | 0.0 | 578 |
| MS.gene29854.t1 | AT1G22150 | 55.514 | 535 | 230 | 4 | 72 | 606 | 128 | 654 | 0.0 | 578 |
| MS.gene29854.t1 | AT4G08620 | 55.660 | 530 | 224 | 4 | 72 | 599 | 120 | 640 | 0.0 | 570 |
| MS.gene29854.t1 | AT1G78000 | 56.250 | 528 | 224 | 3 | 72 | 599 | 125 | 645 | 0.0 | 564 |
| MS.gene29854.t1 | AT1G78000 | 56.250 | 528 | 224 | 3 | 72 | 599 | 125 | 645 | 0.0 | 564 |
| MS.gene29854.t1 | AT1G78000 | 56.250 | 528 | 224 | 3 | 72 | 599 | 125 | 645 | 0.0 | 564 |
| MS.gene29854.t1 | AT1G78000 | 57.055 | 489 | 203 | 3 | 72 | 560 | 125 | 606 | 0.0 | 525 |
| MS.gene29854.t1 | AT1G22150 | 56.466 | 464 | 195 | 3 | 72 | 535 | 128 | 584 | 1.10e-176 | 514 |
| MS.gene29854.t1 | AT3G51895 | 48.015 | 529 | 266 | 4 | 72 | 599 | 117 | 637 | 1.74e-176 | 516 |
| MS.gene29854.t1 | AT3G51895 | 48.015 | 529 | 266 | 4 | 72 | 599 | 162 | 682 | 2.92e-176 | 516 |
| MS.gene29854.t1 | AT1G78000 | 57.388 | 467 | 192 | 3 | 72 | 538 | 125 | 584 | 1.16e-172 | 503 |
| MS.gene29854.t1 | AT1G78000 | 57.237 | 456 | 188 | 3 | 83 | 538 | 1 | 449 | 1.84e-169 | 490 |
| MS.gene29854.t1 | AT3G15990 | 46.198 | 526 | 273 | 5 | 72 | 596 | 124 | 640 | 3.25e-160 | 474 |
| MS.gene29854.t1 | AT1G23090 | 45.779 | 533 | 279 | 5 | 72 | 603 | 101 | 624 | 3.28e-157 | 465 |
| MS.gene29854.t1 | AT4G02700 | 45.747 | 529 | 277 | 4 | 72 | 599 | 108 | 627 | 4.41e-150 | 447 |
| MS.gene29854.t1 | AT5G19600 | 42.185 | 531 | 284 | 5 | 72 | 599 | 113 | 623 | 4.00e-146 | 437 |
| MS.gene29854.t1 | AT1G23090 | 44.950 | 505 | 264 | 6 | 100 | 603 | 1 | 492 | 4.61e-142 | 422 |
| MS.gene29854.t1 | AT1G23090 | 44.950 | 505 | 264 | 6 | 100 | 603 | 1 | 492 | 4.61e-142 | 422 |
| MS.gene29854.t1 | AT1G23090 | 44.950 | 505 | 264 | 6 | 100 | 603 | 1 | 492 | 4.61e-142 | 422 |
| MS.gene29854.t1 | AT1G78000 | 59.843 | 381 | 148 | 1 | 72 | 452 | 125 | 500 | 1.60e-141 | 421 |
| MS.gene29854.t1 | AT3G12520 | 34.019 | 535 | 330 | 9 | 72 | 602 | 117 | 632 | 1.62e-95 | 307 |
| MS.gene29854.t1 | AT3G12520 | 34.019 | 535 | 330 | 9 | 72 | 602 | 101 | 616 | 1.83e-95 | 306 |
| MS.gene29854.t1 | AT5G13550 | 34.087 | 531 | 335 | 7 | 72 | 602 | 130 | 645 | 4.96e-93 | 301 |
| MS.gene29854.t1 | AT3G12520 | 33.871 | 434 | 272 | 7 | 72 | 505 | 117 | 535 | 2.46e-74 | 247 |
Find 117 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACACTTTGTGGATAAAAT+TGG | 0.172279 | 3.4:-72418925 | MS.gene29854:CDS |
| GTTGGACAAGCAGCTAAAAT+TGG | 0.258087 | 3.4:-72422219 | MS.gene29854:CDS |
| ATCTGATGTGGTTTCTGTTT+TGG | 0.265706 | 3.4:-72423603 | MS.gene29854:CDS |
| TAAGAGAAGCTTGCTATATA+TGG | 0.265917 | 3.4:-72421113 | MS.gene29854:CDS |
| TTGTCACATGCTGCACTTGT+AGG | 0.290645 | 3.4:-72423704 | MS.gene29854:CDS |
| TTGATGAATGTTGATACTTC+TGG | 0.296180 | 3.4:-72419315 | MS.gene29854:CDS |
| TTCCATAGAGGAGGTGGATT+TGG | 0.296434 | 3.4:+72424523 | None:intergenic |
| ATAATCCTCTCTGCACTTCC+AGG | 0.297333 | 3.4:-72421147 | MS.gene29854:CDS |
| GATGAATTGAGCTTGGATTA+AGG | 0.309003 | 3.4:+72422265 | None:intergenic |
| CACCAAATCCACCTCCTCTA+TGG | 0.326646 | 3.4:-72424525 | MS.gene29854:CDS |
| GAGGATTATAGAAGCAAGTA+TGG | 0.339449 | 3.4:+72421161 | None:intergenic |
| GATTGGTCTTCAGCAGCTTA+AGG | 0.344368 | 3.4:-72423657 | MS.gene29854:CDS |
| TGGATAAAATTGGGAAAGAA+TGG | 0.350661 | 3.4:-72418915 | MS.gene29854:CDS |
| ATTAAAGGATACCATCTAGA+TGG | 0.353006 | 3.4:-72422019 | MS.gene29854:CDS |
| TTTCTTTGTTCCCATCTAGA+TGG | 0.377693 | 3.4:+72422008 | None:intergenic |
| AAGGGTCCAAGCTGTAATAT+TGG | 0.384678 | 3.4:-72419460 | MS.gene29854:CDS |
| CGACCTGGGATAGAAGTTCT+TGG | 0.386434 | 3.4:-72419793 | MS.gene29854:CDS |
| CAGCAGCTTAAGGGGTTGCT+TGG | 0.391696 | 3.4:-72423647 | MS.gene29854:CDS |
| TTTACTGTAACATTATTTGC+TGG | 0.393090 | 3.4:-72423863 | MS.gene29854:CDS |
| GCTTAAAGTGGCACACTTTG+TGG | 0.393127 | 3.4:-72418935 | MS.gene29854:CDS |
| AGCAGCTTAAGGGGTTGCTT+GGG | 0.395989 | 3.4:-72423646 | MS.gene29854:CDS |
| TCACAGAAGGCTTGTGTTGT+TGG | 0.396597 | 3.4:+72419763 | None:intergenic |
| GCTTGCATTGGTGCTTTCTT+CGG | 0.396879 | 3.4:-72421066 | MS.gene29854:CDS |
| CACACTTTGTGGATAAAATT+GGG | 0.397337 | 3.4:-72418924 | MS.gene29854:CDS |
| TATAACAGTGATTCTGTGTT+TGG | 0.410209 | 3.4:-72421220 | MS.gene29854:CDS |
| GAAATGTTAGCAATGGGTTG+TGG | 0.411356 | 3.4:-72421989 | MS.gene29854:CDS |
| ATGGGTTGTGGGAACATTGC+AGG | 0.411452 | 3.4:-72421977 | MS.gene29854:CDS |
| ATTGGTCTTCAGCAGCTTAA+GGG | 0.412152 | 3.4:-72423656 | MS.gene29854:CDS |
| TGCTGCACTTGTAGGATTCA+TGG | 0.416473 | 3.4:-72423696 | MS.gene29854:CDS |
| TAACCATCATGATTTAAATC+TGG | 0.419091 | 3.4:+72423899 | None:intergenic |
| AGAAACCACATCAGATTTGT+TGG | 0.419815 | 3.4:+72423610 | None:intergenic |
| TTTGACTTCCTTGCTTGCAT+TGG | 0.419990 | 3.4:-72421078 | MS.gene29854:CDS |
| TAAAGAAAGTCAAACTACTA+AGG | 0.422266 | 3.4:-72419484 | MS.gene29854:CDS |
| TTGTTTGTATCGGTAGAAAC+TGG | 0.425008 | 3.4:-72421039 | MS.gene29854:CDS |
| AGTTCAAGAGAAATTGCAAT+TGG | 0.438871 | 3.4:-72423977 | MS.gene29854:CDS |
| TGTAATTGATGAATTGAGCT+TGG | 0.441048 | 3.4:+72422258 | None:intergenic |
| CCATAAATCTTGCAAACAAA+AGG | 0.446827 | 3.4:+72422508 | None:intergenic |
| CCTCTTATCTATGCTGTGAT+GGG | 0.450706 | 3.4:-72424001 | MS.gene29854:CDS |
| TCTCTTATGTCAATTAATCC+TGG | 0.451555 | 3.4:+72421129 | None:intergenic |
| TACAAGCACTCCAGGCATCT+TGG | 0.452819 | 3.4:-72419719 | MS.gene29854:CDS |
| ACTTCATGCTATGTTGCAAC+TGG | 0.454245 | 3.4:-72421947 | MS.gene29854:intron |
| GGATAAAATTGGGAAAGAAT+GGG | 0.456057 | 3.4:-72418914 | MS.gene29854:CDS |
| CTTCGGTGTCTTGTTTGTAT+CGG | 0.463347 | 3.4:-72421049 | MS.gene29854:CDS |
| TCCTCTTATCTATGCTGTGA+TGG | 0.465460 | 3.4:-72424002 | MS.gene29854:CDS |
| AATATGAGAGTCACAGAAGA+TGG | 0.472056 | 3.4:-72424604 | MS.gene29854:CDS |
| CTCCATCATCAAATTCTATC+CGG | 0.473170 | 3.4:-72423563 | MS.gene29854:CDS |
| AAATGTTAGCAATGGGTTGT+GGG | 0.484005 | 3.4:-72421988 | MS.gene29854:CDS |
| AACAAAGAAATGTTAGCAAT+GGG | 0.485559 | 3.4:-72421995 | MS.gene29854:CDS |
| TGTGAATTACTACCCACCTT+GGG | 0.486493 | 3.4:+72418959 | None:intergenic |
| GCAGGTGCAGCCATCATGAT+TGG | 0.487827 | 3.4:-72423674 | MS.gene29854:CDS |
| AAGATACTCATCAAACAGAT+AGG | 0.488267 | 3.4:-72424567 | MS.gene29854:CDS |
| GATCCAGATTTAAATCATGA+TGG | 0.489231 | 3.4:-72423902 | MS.gene29854:CDS |
| TTGCAGGTTGGGATTTCTTG+TGG | 0.498105 | 3.4:-72423732 | MS.gene29854:intron |
| CCCATCACAGCATAGATAAG+AGG | 0.498846 | 3.4:+72424001 | None:intergenic |
| TTACCTTTCTCTTACAACAT+TGG | 0.501627 | 3.4:+72419657 | None:intergenic |
| ATAGTAAAACATGTCAAAAG+AGG | 0.504882 | 3.4:-72422288 | MS.gene29854:CDS |
| CCCATGGCTACAAGCACTCC+AGG | 0.507925 | 3.4:-72419727 | MS.gene29854:CDS |
| GACACTAGAGGAGCAATAGC+TGG | 0.513276 | 3.4:+72422369 | None:intergenic |
| TACTTCTGGAATTATAGTAC+TGG | 0.514900 | 3.4:-72419301 | MS.gene29854:CDS |
| CCTTACTGTTTCTGAAGCTG+TGG | 0.516525 | 3.4:-72418887 | MS.gene29854:CDS |
| ATGCCAATGTTGTAAGAGAA+AGG | 0.517333 | 3.4:-72419660 | MS.gene29854:intron |
| ATTCATCAATTACAACTCAA+TGG | 0.519172 | 3.4:-72422249 | MS.gene29854:CDS |
| CAACTCAATGGTGAACATGT+TGG | 0.525684 | 3.4:-72422237 | MS.gene29854:CDS |
| TTGGTCATTCGTATAAGCTC+TGG | 0.525879 | 3.4:-72419700 | MS.gene29854:CDS |
| GCCTGGAGTGCTTGTAGCCA+TGG | 0.529683 | 3.4:+72419726 | None:intergenic |
| CTCCGGATAGAATTTGATGA+TGG | 0.533410 | 3.4:+72423561 | None:intergenic |
| GATCAACCACTTTGTGACAT+AGG | 0.533753 | 3.4:+72423921 | None:intergenic |
| GAACAAAGAAATGTTAGCAA+TGG | 0.536518 | 3.4:-72421996 | MS.gene29854:CDS |
| AGCAGTGACACTACAGCTAC+AGG | 0.537993 | 3.4:+72423953 | None:intergenic |
| CCACAGCTTCAGAAACAGTA+AGG | 0.539809 | 3.4:+72418887 | None:intergenic |
| ATCAACCACTTTGTGACATA+GGG | 0.541144 | 3.4:+72423922 | None:intergenic |
| TTGTGAATTACTACCCACCT+TGG | 0.545137 | 3.4:+72418958 | None:intergenic |
| GGTCAGCGAATTTATAAGAC+AGG | 0.550450 | 3.4:+72418857 | None:intergenic |
| AGAAAGCACCAATGCAAGCA+AGG | 0.551839 | 3.4:+72421070 | None:intergenic |
| ATACGAATGACCAAGATGCC+TGG | 0.556493 | 3.4:+72419709 | None:intergenic |
| AAAGAAAGTCAAACTACTAA+GGG | 0.561981 | 3.4:-72419483 | MS.gene29854:CDS |
| TTGGTCTTCAGCAGCTTAAG+GGG | 0.565521 | 3.4:-72423655 | MS.gene29854:CDS |
| TTAAAGGATACCATCTAGAT+GGG | 0.565733 | 3.4:-72422018 | MS.gene29854:CDS |
| ATCAGTATCAAATATTGTGA+TGG | 0.566934 | 3.4:-72421244 | MS.gene29854:CDS |
| CCAAGCTGTAATATTGGACA+TGG | 0.568325 | 3.4:-72419454 | MS.gene29854:CDS |
| CCATGTCCAATATTACAGCT+TGG | 0.570097 | 3.4:+72419454 | None:intergenic |
| CTACCAAGAACTTCTATCCC+AGG | 0.571095 | 3.4:+72419790 | None:intergenic |
| AGTAATTCACAAGCTTAAAG+TGG | 0.571416 | 3.4:-72418947 | MS.gene29854:CDS |
| TACTGGAGGAACTGCACAAG+AGG | 0.577069 | 3.4:-72419284 | MS.gene29854:CDS |
| ATAGAAGCAAGTATGGCCAC+AGG | 0.579064 | 3.4:+72421168 | None:intergenic |
| AAAGTCAAACTACTAAGGGA+AGG | 0.579628 | 3.4:-72419479 | MS.gene29854:CDS |
| CACAAGAGGTTGCTCTCCCG+TGG | 0.584272 | 3.4:-72419270 | MS.gene29854:CDS |
| TGTGTTTGGAATTGTTTACA+AGG | 0.592100 | 3.4:-72421206 | MS.gene29854:CDS |
| AAGTCAAACTACTAAGGGAA+GGG | 0.596925 | 3.4:-72419478 | MS.gene29854:CDS |
| CTCTTATCTATGCTGTGATG+GGG | 0.597838 | 3.4:-72424000 | MS.gene29854:CDS |
| TTATAGGAAGCAATGGCTGT+TGG | 0.598367 | 3.4:-72422058 | MS.gene29854:intron |
| TCTCATATTGAAAGCATCAG+AGG | 0.599209 | 3.4:+72424618 | None:intergenic |
| CTTCACCAACAAATCTGATG+TGG | 0.603053 | 3.4:-72423615 | MS.gene29854:CDS |
| TAGAAGCAAGTATGGCCACA+GGG | 0.603158 | 3.4:+72421169 | None:intergenic |
| ATTGTTCCAGAATACTCAAG+TGG | 0.606100 | 3.4:-72419527 | MS.gene29854:intron |
| TTCTGGAATTATAGTACTGG+AGG | 0.606870 | 3.4:-72419298 | MS.gene29854:CDS |
| TGCTATGGTGAACCCAAGGT+GGG | 0.608813 | 3.4:-72418971 | MS.gene29854:CDS |
| CTTCCAATGACAAAATTCAG+AGG | 0.616131 | 3.4:+72422546 | None:intergenic |
| CCTGGAGTGCTTGTAGCCAT+GGG | 0.620616 | 3.4:+72419727 | None:intergenic |
| CTCATATTGAAAGCATCAGA+GGG | 0.624348 | 3.4:+72424619 | None:intergenic |
| TGATGTTAGTCAATATCCCA+TGG | 0.624539 | 3.4:-72419743 | MS.gene29854:CDS |
| TTGTTCCAGAATACTCAAGT+GGG | 0.625900 | 3.4:-72419526 | MS.gene29854:intron |
| TTGCTATGGTGAACCCAAGG+TGG | 0.625914 | 3.4:-72418972 | MS.gene29854:CDS |
| ATCTTCCCTATGTCACAAAG+TGG | 0.636118 | 3.4:-72423927 | MS.gene29854:CDS |
| GCACTTGTAGGATTCATGGC+AGG | 0.636916 | 3.4:-72423692 | MS.gene29854:CDS |
| TTCCAATGACAAAATTCAGA+GGG | 0.638852 | 3.4:+72422547 | None:intergenic |
| ATATTGACTAACATCACAGA+AGG | 0.640670 | 3.4:+72419750 | None:intergenic |
| GTAATACAATCAATTCGACC+TGG | 0.650323 | 3.4:-72419808 | MS.gene29854:CDS |
| CTGCTGAAGACCAATCATGA+TGG | 0.650508 | 3.4:+72423664 | None:intergenic |
| ATCACAGCATAGATAAGAGG+AGG | 0.652330 | 3.4:+72424004 | None:intergenic |
| TAATACAATCAATTCGACCT+GGG | 0.657689 | 3.4:-72419807 | MS.gene29854:CDS |
| GATAATATAACTGACACTAG+AGG | 0.681566 | 3.4:+72422357 | None:intergenic |
| AGTTTGCTATGGTGAACCCA+AGG | 0.691933 | 3.4:-72418975 | MS.gene29854:CDS |
| AGAAGCAAGTATGGCCACAG+GGG | 0.717759 | 3.4:+72421170 | None:intergenic |
| ATCAAACAGATAGGACACAG+TGG | 0.745524 | 3.4:-72424558 | MS.gene29854:CDS |
| GCTGTTATATTACACCCCTG+TGG | 0.757735 | 3.4:-72421184 | MS.gene29854:CDS |
| TTAATCCTGGAAGTGCAGAG+AGG | 0.761072 | 3.4:+72421142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATTTTTATAAAT+TGG | + | chr3.4:72422092-72422111 | None:intergenic | 0.0% |
| !! | TAAATATCTAAATGAAAATT+TGG | - | chr3.4:72423620-72423639 | MS.gene29854:CDS | 10.0% |
| !!! | AAGAAATTCTAATAATTTTT+TGG | + | chr3.4:72420842-72420861 | None:intergenic | 10.0% |
| !!! | ATTTATTTTAGGATTATTTT+AGG | + | chr3.4:72421646-72421665 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCATAATTTTCTT+TGG | + | chr3.4:72421736-72421755 | None:intergenic | 10.0% |
| !!! | GTTTATTTTTTTCATAAAAA+AGG | + | chr3.4:72420261-72420280 | None:intergenic | 10.0% |
| !!! | TAAGAAATGAAATATATTTT+TGG | - | chr3.4:72420998-72421017 | MS.gene29854:intron | 10.0% |
| !!! | TATAGATTTTATTAAAATTG+TGG | - | chr3.4:72424388-72424407 | MS.gene29854:CDS | 10.0% |
| !!! | TTTTTATTTTTTTTTAGAGT+TGG | + | chr3.4:72423327-72423346 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTCATTTTCT+GGG | - | chr3.4:72420492-72420511 | MS.gene29854:intron | 10.0% |
| !! | ACGAAATTATTGATATTTAT+GGG | - | chr3.4:72422889-72422908 | MS.gene29854:intron | 15.0% |
| !! | ATAGACTAAAAATAAAATTC+TGG | + | chr3.4:72422751-72422770 | None:intergenic | 15.0% |
| !! | ATATTGTTCAAGTAAAAATT+TGG | + | chr3.4:72421031-72421050 | None:intergenic | 15.0% |
| !! | CAGAAAATGAAAAAAAAAAA+AGG | + | chr3.4:72420493-72420512 | None:intergenic | 15.0% |
| !! | GTATATATTCAACAAAATTA+TGG | + | chr3.4:72424367-72424386 | None:intergenic | 15.0% |
| !! | TAAAGACAATTAACAAAAAA+GGG | - | chr3.4:72420713-72420732 | MS.gene29854:intron | 15.0% |
| !! | TAACTAAAATATTTGTAAAG+TGG | + | chr3.4:72423051-72423070 | None:intergenic | 15.0% |
| !! | TAGTTACAAAAAAAAGATAA+AGG | - | chr3.4:72420418-72420437 | MS.gene29854:intron | 15.0% |
| !! | TTCTAAACATATATGAAAAT+AGG | + | chr3.4:72422527-72422546 | None:intergenic | 15.0% |
| !!! | AAGTAAGTACTTTTTTTTTT+TGG | - | chr3.4:72419945-72419964 | MS.gene29854:intron | 15.0% |
| !!! | ATTGTCATTTTATATCATAA+AGG | - | chr3.4:72420389-72420408 | MS.gene29854:intron | 15.0% |
| !!! | ATTTCTCTTAACTTAATTTT+AGG | - | chr3.4:72420164-72420183 | MS.gene29854:intron | 15.0% |
| !!! | CATCAATAAAATTGTTTTTA+AGG | + | chr3.4:72423416-72423435 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTTCATTTTC+TGG | - | chr3.4:72420491-72420510 | MS.gene29854:intron | 15.0% |
| !!! | GAAAATAACAGTATATTTTT+AGG | - | chr3.4:72420813-72420832 | MS.gene29854:intron | 15.0% |
| !!! | GATCTACTTTTATTTATTTT+AGG | + | chr3.4:72421657-72421676 | None:intergenic | 15.0% |
| !!! | GTTTTTAACCAATAAATTAA+CGG | - | chr3.4:72422696-72422715 | MS.gene29854:intron | 15.0% |
| !!! | TATTTATTTTCCTTTTATTG+TGG | + | chr3.4:72423606-72423625 | None:intergenic | 15.0% |
| !!! | TTTTTAACCAATAAATTAAC+GGG | - | chr3.4:72422697-72422716 | MS.gene29854:intron | 15.0% |
| !! | AAACATATATGAAAATAGGT+TGG | + | chr3.4:72422523-72422542 | None:intergenic | 20.0% |
| !! | AACATATATGAAAATAGGTT+GGG | + | chr3.4:72422522-72422541 | None:intergenic | 20.0% |
| !! | AATTATTGGTAAAAAGACAA+AGG | - | chr3.4:72423125-72423144 | MS.gene29854:intron | 20.0% |
| !! | AGATAATTAACAGTTAAATG+AGG | + | chr3.4:72419691-72419710 | None:intergenic | 20.0% |
| !! | ATATCATTACTCTTAAGTTA+AGG | + | chr3.4:72419990-72420009 | None:intergenic | 20.0% |
| !! | ATATCCAAAACAGATAAAAA+TGG | - | chr3.4:72421165-72421184 | MS.gene29854:CDS | 20.0% |
| !! | ATCGTTACAAAAAAAGATAA+AGG | + | chr3.4:72420202-72420221 | None:intergenic | 20.0% |
| !! | GACGAAATTATTGATATTTA+TGG | - | chr3.4:72422888-72422907 | MS.gene29854:intron | 20.0% |
| !! | GTAAAGACAATTAACAAAAA+AGG | - | chr3.4:72420712-72420731 | MS.gene29854:intron | 20.0% |
| !! | GTTACCTAAAATTAAGTTAA+GGG | - | chr3.4:72420449-72420468 | MS.gene29854:intron | 20.0% |
| !! | TATCATTACTCTTAAGTTAA+GGG | + | chr3.4:72419989-72420008 | None:intergenic | 20.0% |
| !! | TATCCAAAACAGATAAAAAT+GGG | - | chr3.4:72421166-72421185 | MS.gene29854:CDS | 20.0% |
| !! | TGTTACCTAAAATTAAGTTA+AGG | - | chr3.4:72420448-72420467 | MS.gene29854:intron | 20.0% |
| !!! | AAAAACTTGTTATTCTTAAG+TGG | + | chr3.4:72418999-72419018 | None:intergenic | 20.0% |
| !!! | AAATGAAAATTTGGTTTTGT+AGG | - | chr3.4:72423629-72423648 | MS.gene29854:CDS | 20.0% |
| !!! | AACATTGGTCTAAAAATAAA+AGG | + | chr3.4:72419196-72419215 | None:intergenic | 20.0% |
| !!! | AATTTAATTTAATCTGTTGC+AGG | - | chr3.4:72419735-72419754 | MS.gene29854:CDS | 20.0% |
| !!! | AGGTTTAATTTGTGTTTTAT+AGG | - | chr3.4:72421409-72421428 | MS.gene29854:intron | 20.0% |
| !!! | AGTTTAACTTAATAGATTCA+AGG | + | chr3.4:72422672-72422691 | None:intergenic | 20.0% |
| !!! | ATATACTGTTATTTTCAACT+AGG | + | chr3.4:72420809-72420828 | None:intergenic | 20.0% |
| !!! | ATATGAATGATTTGTTTGAT+TGG | - | chr3.4:72419435-72419454 | MS.gene29854:intron | 20.0% |
| !!! | CTATTATTGAAGTTCATTTT+TGG | - | chr3.4:72423294-72423313 | MS.gene29854:intron | 20.0% |
| !!! | GTTGTTATTTTCTAACATAA+AGG | + | chr3.4:72420230-72420249 | None:intergenic | 20.0% |
| !!! | TATTTATGTATCTGAAACAT+TGG | + | chr3.4:72419211-72419230 | None:intergenic | 20.0% |
| !!! | TCAATGAAATTTGATTTTCT+AGG | + | chr3.4:72420343-72420362 | None:intergenic | 20.0% |
| !!! | TGAGATTGATGAATTTTTTT+TGG | + | chr3.4:72420291-72420310 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTTTACTCTTTTT+AGG | + | chr3.4:72422830-72422849 | None:intergenic | 20.0% |
| !!! | TTTAGTTTCTGAAATTTTTG+AGG | - | chr3.4:72421389-72421408 | MS.gene29854:intron | 20.0% |
| !!! | TTTATGTCTTTAACTTTTGT+TGG | + | chr3.4:72421797-72421816 | None:intergenic | 20.0% |
| !!! | TTTTTACCAATAATTTTGAC+CGG | + | chr3.4:72423120-72423139 | None:intergenic | 20.0% |
| ! | AAAGAAAGTCAAACTACTAA+GGG | - | chr3.4:72424000-72424019 | MS.gene29854:CDS | 25.0% |
| ! | AACAAAGAAATGTTAGCAAT+GGG | - | chr3.4:72421488-72421507 | MS.gene29854:intron | 25.0% |
| ! | AAGAATGTGAATTGTGTATT+TGG | + | chr3.4:72421948-72421967 | None:intergenic | 25.0% |
| ! | AGAAAGAAAAAACATGTTCA+TGG | + | chr3.4:72419046-72419065 | None:intergenic | 25.0% |
| ! | AGACTGAGATTAACAAAAAA+AGG | - | chr3.4:72420677-72420696 | MS.gene29854:intron | 25.0% |
| ! | AGAGTAAAGAAAAACATTAC+AGG | - | chr3.4:72422834-72422853 | MS.gene29854:intron | 25.0% |
| ! | ATAAAGTCTCTTCGAATAAA+AGG | - | chr3.4:72423479-72423498 | MS.gene29854:intron | 25.0% |
| ! | ATAATACCGGTCAAAATTAT+TGG | - | chr3.4:72423111-72423130 | MS.gene29854:intron | 25.0% |
| ! | ATAGTAAAACATGTCAAAAG+AGG | - | chr3.4:72421195-72421214 | MS.gene29854:CDS | 25.0% |
| ! | ATCAGTATCAAATATTGTGA+TGG | - | chr3.4:72422239-72422258 | MS.gene29854:CDS | 25.0% |
| ! | ATCCAAAACAGATAAAAATG+GGG | - | chr3.4:72421167-72421186 | MS.gene29854:CDS | 25.0% |
| ! | ATTCATCAATTACAACTCAA+TGG | - | chr3.4:72421234-72421253 | MS.gene29854:CDS | 25.0% |
| ! | CAAGGTAAGATAAACATATT+AGG | - | chr3.4:72420777-72420796 | MS.gene29854:intron | 25.0% |
| ! | GACTGAGATTAACAAAAAAA+GGG | - | chr3.4:72420678-72420697 | MS.gene29854:intron | 25.0% |
| ! | GTATATAGTACCACAATAAA+AGG | - | chr3.4:72423593-72423612 | MS.gene29854:CDS | 25.0% |
| ! | GTTTAGATTATCGACAAATT+TGG | + | chr3.4:72424432-72424451 | None:intergenic | 25.0% |
| ! | TAAAGAAAGTCAAACTACTA+AGG | - | chr3.4:72423999-72424018 | MS.gene29854:CDS | 25.0% |
| ! | TAACCATCATGATTTAAATC+TGG | + | chr3.4:72419587-72419606 | None:intergenic | 25.0% |
| ! | TAAGATAAACATATTAGGCT+CGG | - | chr3.4:72420782-72420801 | MS.gene29854:intron | 25.0% |
| ! | TAGTTAACTATACCTATCAT+GGG | - | chr3.4:72423065-72423084 | MS.gene29854:intron | 25.0% |
| ! | TATATGAGACCATATATATG+TGG | + | chr3.4:72423260-72423279 | None:intergenic | 25.0% |
| ! | TCTATCAAAGAAATTGTGTA+AGG | + | chr3.4:72424147-72424166 | None:intergenic | 25.0% |
| ! | TCTTAAACATGTGTGTAAAA+TGG | + | chr3.4:72422633-72422652 | None:intergenic | 25.0% |
| ! | TTAGTTAACTATACCTATCA+TGG | - | chr3.4:72423064-72423083 | MS.gene29854:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr3.4:72420059-72420078 | MS.gene29854:intron | 25.0% |
| ! | TTGAGTTTCTGATTATTTCA+GGG | - | chr3.4:72421063-72421082 | MS.gene29854:CDS | 25.0% |
| ! | TTTAATTCTTAAACACTTGC+AGG | - | chr3.4:72422171-72422190 | MS.gene29854:intron | 25.0% |
| ! | TTTACTGTAACATTATTTGC+TGG | - | chr3.4:72419620-72419639 | MS.gene29854:intron | 25.0% |
| ! | TTTGTCTATTATATTGACAG+TGG | - | chr3.4:72420911-72420930 | MS.gene29854:intron | 25.0% |
| !! | AAAGAAACAAAAAGCTTTTC+TGG | - | chr3.4:72421088-72421107 | MS.gene29854:CDS | 25.0% |
| !! | AGATCTTTTGCTTCAATTAA+AGG | - | chr3.4:72421449-72421468 | MS.gene29854:intron | 25.0% |
| !! | ATTATTCTAGAAGTGAATTC+TGG | + | chr3.4:72421702-72421721 | None:intergenic | 25.0% |
| !! | GGGTCATAAATTGTAAATTT+TGG | - | chr3.4:72420733-72420752 | MS.gene29854:intron | 25.0% |
| !! | TAGTCCCTTAACTTAATTTT+AGG | + | chr3.4:72420456-72420475 | None:intergenic | 25.0% |
| !! | TATAATATATTGCATTGACG+TGG | - | chr3.4:72424278-72424297 | MS.gene29854:intron | 25.0% |
| !! | TTTGAGTTTCTGATTATTTC+AGG | - | chr3.4:72421062-72421081 | MS.gene29854:CDS | 25.0% |
| !! | TTTTTGAACAAGCTAAGTAT+TGG | + | chr3.4:72419083-72419102 | None:intergenic | 25.0% |
| !!! | AAAAAAAGTACTTACTTCTC+CGG | + | chr3.4:72419942-72419961 | None:intergenic | 25.0% |
| !!! | CATGTTTTTTCTTTCTTTAG+TGG | - | chr3.4:72419050-72419069 | MS.gene29854:intron | 25.0% |
| !!! | GTAATTAGTTTTTTCCATAG+AGG | + | chr3.4:72418975-72418994 | None:intergenic | 25.0% |
| !!! | TGTTTGGGAATTTTAAGAAA+AGG | + | chr3.4:72422496-72422515 | None:intergenic | 25.0% |
| !!! | TTCACTTCTAGAATAATTGA+AGG | - | chr3.4:72421705-72421724 | MS.gene29854:intron | 25.0% |
| !!! | TTTAAAGATGATTTTCTAGC+AGG | - | chr3.4:72419119-72419138 | MS.gene29854:intron | 25.0% |
| AAATCCATGCCAAATTATGA+TGG | + | chr3.4:72423189-72423208 | None:intergenic | 30.0% | |
| AAGATAAACATATTAGGCTC+GGG | - | chr3.4:72420783-72420802 | MS.gene29854:intron | 30.0% | |
| AAGATACTCATCAAACAGAT+AGG | - | chr3.4:72418916-72418935 | MS.gene29854:CDS | 30.0% | |
| AAGTGAGTTCCATCATAATT+TGG | - | chr3.4:72423177-72423196 | MS.gene29854:intron | 30.0% | |
| AATAAGAAGTGAGAAAACCA+AGG | + | chr3.4:72420047-72420066 | None:intergenic | 30.0% | |
| AATTAATCACCGAGAAAACA+TGG | - | chr3.4:72422053-72422072 | MS.gene29854:CDS | 30.0% | |
| AATTTAATCTGTTGCAGGTT+GGG | - | chr3.4:72419740-72419759 | MS.gene29854:CDS | 30.0% | |
| ACATTTCAAACACACGAAAT+CGG | + | chr3.4:72421849-72421868 | None:intergenic | 30.0% | |
| AGTAATTCACAAGCTTAAAG+TGG | - | chr3.4:72424536-72424555 | MS.gene29854:CDS | 30.0% | |
| AGTTAACTATACCTATCATG+GGG | - | chr3.4:72423066-72423085 | MS.gene29854:intron | 30.0% | |
| AGTTCAAGAGAAATTGCAAT+TGG | - | chr3.4:72419506-72419525 | MS.gene29854:CDS | 30.0% | |
| ATCCACTAGTGTAATAATAC+CGG | - | chr3.4:72423098-72423117 | MS.gene29854:intron | 30.0% | |
| ATTAAAGGATACCATCTAGA+TGG | - | chr3.4:72421464-72421483 | MS.gene29854:intron | 30.0% | |
| CACACTTTGTGGATAAAATT+GGG | - | chr3.4:72424559-72424578 | MS.gene29854:CDS | 30.0% | |
| CCATAAATCTTGCAAACAAA+AGG | + | chr3.4:72420978-72420997 | None:intergenic | 30.0% | |
| CGAAAGTAGAAACATATTTG+AGG | - | chr3.4:72420621-72420640 | MS.gene29854:intron | 30.0% | |
| GAACAAAGAAATGTTAGCAA+TGG | - | chr3.4:72421487-72421506 | MS.gene29854:intron | 30.0% | |
| GATAATATAACTGACACTAG+AGG | + | chr3.4:72421129-72421148 | None:intergenic | 30.0% | |
| GATCCAGATTTAAATCATGA+TGG | - | chr3.4:72419581-72419600 | MS.gene29854:intron | 30.0% | |
| GGATAAAATTGGGAAAGAAT+GGG | - | chr3.4:72424569-72424588 | MS.gene29854:CDS | 30.0% | |
| TAATACAATCAATTCGACCT+GGG | - | chr3.4:72423676-72423695 | MS.gene29854:CDS | 30.0% | |
| TAATTTAATCTGTTGCAGGT+TGG | - | chr3.4:72419739-72419758 | MS.gene29854:CDS | 30.0% | |
| TATAACAGTGATTCTGTGTT+TGG | - | chr3.4:72422263-72422282 | MS.gene29854:CDS | 30.0% | |
| TATCTAATGTTGCAGAGTAT+TGG | - | chr3.4:72419266-72419285 | MS.gene29854:CDS | 30.0% | |
| TCTCTTATGTCAATTAATCC+TGG | + | chr3.4:72422357-72422376 | None:intergenic | 30.0% | |
| TGGATAAAATTGGGAAAGAA+TGG | - | chr3.4:72424568-72424587 | MS.gene29854:CDS | 30.0% | |
| TGTAATTGATGAATTGAGCT+TGG | + | chr3.4:72421228-72421247 | None:intergenic | 30.0% | |
| TGTTTGTGAATATATACCTG+AGG | + | chr3.4:72419170-72419189 | None:intergenic | 30.0% | |
| TTAAAGGATACCATCTAGAT+GGG | - | chr3.4:72421465-72421484 | MS.gene29854:intron | 30.0% | |
| TTAAGCACCCGTTAATTTAT+TGG | + | chr3.4:72422707-72422726 | None:intergenic | 30.0% | |
| TTACCTTTCTCTTACAACAT+TGG | + | chr3.4:72423829-72423848 | None:intergenic | 30.0% | |
| TTCCAATGACAAAATTCAGA+GGG | + | chr3.4:72420939-72420958 | None:intergenic | 30.0% | |
| TTGATGAATGTTGATACTTC+TGG | - | chr3.4:72424168-72424187 | MS.gene29854:intron | 30.0% | |
| ! | AAGTATTCACCATGTTTTCT+CGG | + | chr3.4:72422065-72422084 | None:intergenic | 30.0% |
| ! | ATATTGACTAACATCACAGA+AGG | + | chr3.4:72423736-72423755 | None:intergenic | 30.0% |
| ! | TGTGTTTGGAATTGTTTACA+AGG | - | chr3.4:72422277-72422296 | MS.gene29854:CDS | 30.0% |
| ! | TTGTGTTTTATAGGAAGCAA+TGG | - | chr3.4:72421418-72421437 | MS.gene29854:intron | 30.0% |
| ! | TTTTTGTCGAGATATCCAAT+CGG | + | chr3.4:72422035-72422054 | None:intergenic | 30.0% |
| !! | AACCCCATTTTTATCTGTTT+TGG | + | chr3.4:72421172-72421191 | None:intergenic | 30.0% |
| !! | CCTTTTGTTTGCAAGATTTA+TGG | - | chr3.4:72420975-72420994 | MS.gene29854:intron | 30.0% |
| !! | TAAGAGAAGCTTGCTATATA+TGG | - | chr3.4:72422370-72422389 | MS.gene29854:CDS | 30.0% |
| !! | TACTTCTGGAATTATAGTAC+TGG | - | chr3.4:72424182-72424201 | MS.gene29854:intron | 30.0% |
| !! | TTGGTTTTCTCACTTCTTAT+TGG | - | chr3.4:72420046-72420065 | MS.gene29854:intron | 30.0% |
| !!! | ATTAGTTTTTTCCATAGAGG+AGG | + | chr3.4:72418972-72418991 | None:intergenic | 30.0% |
| !!! | GAACTGTTTTTTGTTTGACA+AGG | - | chr3.4:72420759-72420778 | MS.gene29854:intron | 30.0% |
| !!! | GGAATTTTTCAAGTTGCATT+TGG | - | chr3.4:72419641-72419660 | MS.gene29854:intron | 30.0% |
| !!! | TTTACTTTTGCAGTTTGCTA+TGG | - | chr3.4:72424497-72424516 | MS.gene29854:CDS | 30.0% |
| AAAGTCAAACTACTAAGGGA+AGG | - | chr3.4:72424004-72424023 | MS.gene29854:CDS | 35.0% | |
| AAGGAGATCTTCACTTAAGA+CGG | + | chr3.4:72422004-72422023 | None:intergenic | 35.0% | |
| AAGTCAAACTACTAAGGGAA+GGG | - | chr3.4:72424005-72424024 | MS.gene29854:CDS | 35.0% | |
| AATATGAGAGTCACAGAAGA+TGG | - | chr3.4:72418879-72418898 | MS.gene29854:CDS | 35.0% | |
| ACTAACAAAGAACACACTCA+AGG | + | chr3.4:72420575-72420594 | None:intergenic | 35.0% | |
| ACTACCATGAGTCTCAATAT+TGG | - | chr3.4:72424248-72424267 | MS.gene29854:intron | 35.0% | |
| AGAAACCACATCAGATTTGT+TGG | + | chr3.4:72419876-72419895 | None:intergenic | 35.0% | |
| AGAGAGAAAAATGAAGAGAG+AGG | - | chr3.4:72420082-72420101 | MS.gene29854:intron | 35.0% | |
| AGTTCCATCATAATTTGGCA+TGG | - | chr3.4:72423182-72423201 | MS.gene29854:intron | 35.0% | |
| ATCAACCACTTTGTGACATA+GGG | + | chr3.4:72419564-72419583 | None:intergenic | 35.0% | |
| ATGCCAATGTTGTAAGAGAA+AGG | - | chr3.4:72423823-72423842 | MS.gene29854:intron | 35.0% | |
| ATTGTTCCAGAATACTCAAG+TGG | - | chr3.4:72423956-72423975 | MS.gene29854:CDS | 35.0% | |
| CAAAGATGTTACCACATGTT+TGG | - | chr3.4:72424307-72424326 | MS.gene29854:intron | 35.0% | |
| CAGCAAAACTCACATAACAT+GGG | + | chr3.4:72420874-72420893 | None:intergenic | 35.0% | |
| CGTTTAGTTGAAGTTACATG+GGG | + | chr3.4:72421898-72421917 | None:intergenic | 35.0% | |
| CTACCATGAGTCTCAATATT+GGG | - | chr3.4:72424249-72424268 | MS.gene29854:intron | 35.0% | |
| CTCCATCATCAAATTCTATC+CGG | - | chr3.4:72419920-72419939 | MS.gene29854:intron | 35.0% | |
| CTTAATAGATTCAAGGTACG+TGG | + | chr3.4:72422665-72422684 | None:intergenic | 35.0% | |
| CTTCCAATGACAAAATTCAG+AGG | + | chr3.4:72420940-72420959 | None:intergenic | 35.0% | |
| GAGAGAAAGTTGTCAAAAAG+TGG | - | chr3.4:72420128-72420147 | MS.gene29854:intron | 35.0% | |
| GAGGATTATAGAAGCAAGTA+TGG | + | chr3.4:72422325-72422344 | None:intergenic | 35.0% | |
| GATGAATTGAGCTTGGATTA+AGG | + | chr3.4:72421221-72421240 | None:intergenic | 35.0% | |
| GATTCTGGTCCACATATATA+TGG | - | chr3.4:72423248-72423267 | MS.gene29854:intron | 35.0% | |
| GCAAAACTTGATCCTCAATA+TGG | - | chr3.4:72419302-72419321 | MS.gene29854:CDS | 35.0% | |
| GCACACTTTGTGGATAAAAT+TGG | - | chr3.4:72424558-72424577 | MS.gene29854:CDS | 35.0% | |
| GCGTTTAGTTGAAGTTACAT+GGG | + | chr3.4:72421899-72421918 | None:intergenic | 35.0% | |
| GTAATACAATCAATTCGACC+TGG | - | chr3.4:72423675-72423694 | MS.gene29854:CDS | 35.0% | |
| TCAGCAAAACTCACATAACA+TGG | + | chr3.4:72420875-72420894 | None:intergenic | 35.0% | |
| TGATGTTAGTCAATATCCCA+TGG | - | chr3.4:72423740-72423759 | MS.gene29854:intron | 35.0% | |
| TGCGTTTAGTTGAAGTTACA+TGG | + | chr3.4:72421900-72421919 | None:intergenic | 35.0% | |
| TTACCACATGTTTGGATTGA+CGG | - | chr3.4:72424315-72424334 | MS.gene29854:intron | 35.0% | |
| TTGTTCCAGAATACTCAAGT+GGG | - | chr3.4:72423957-72423976 | MS.gene29854:CDS | 35.0% | |
| TTTCTTTGTTCCCATCTAGA+TGG | + | chr3.4:72421478-72421497 | None:intergenic | 35.0% | |
| TTTGGATTGACGGTTAGATT+TGG | - | chr3.4:72424325-72424344 | MS.gene29854:intron | 35.0% | |
| ! | AAAATAGGTTGGGTTGTGTT+TGG | + | chr3.4:72422512-72422531 | None:intergenic | 35.0% |
| ! | AAATAGGTTGGGTTGTGTTT+GGG | + | chr3.4:72422511-72422530 | None:intergenic | 35.0% |
| ! | ATCTGATGTGGTTTCTGTTT+TGG | - | chr3.4:72419880-72419899 | MS.gene29854:intron | 35.0% |
| ! | GATTTCGTGTGTTTGAAATG+TGG | - | chr3.4:72421848-72421867 | MS.gene29854:intron | 35.0% |
| ! | TACCCTCTGAATTTTGTCAT+TGG | - | chr3.4:72420934-72420953 | MS.gene29854:intron | 35.0% |
| ! | TTCATGGCAAGTTCTTTTCT+TGG | + | chr3.4:72419030-72419049 | None:intergenic | 35.0% |
| ! | TTGTTTGTATCGGTAGAAAC+TGG | - | chr3.4:72422444-72422463 | MS.gene29854:intron | 35.0% |
| !! | AAATGTTAGCAATGGGTTGT+GGG | - | chr3.4:72421495-72421514 | MS.gene29854:intron | 35.0% |
| !! | AAGTTGCATTTGGAGTTTTC+AGG | - | chr3.4:72419651-72419670 | MS.gene29854:intron | 35.0% |
| !! | CTCATATTGAAAGCATCAGA+GGG | + | chr3.4:72418867-72418886 | None:intergenic | 35.0% |
| !! | GAATTCTGGCTTTCTTCTTT+GGG | + | chr3.4:72421688-72421707 | None:intergenic | 35.0% |
| !! | TATCCAATCGGTCATTTTGA+AGG | + | chr3.4:72422023-72422042 | None:intergenic | 35.0% |
| !! | TCTCATATTGAAAGCATCAG+AGG | + | chr3.4:72418868-72418887 | None:intergenic | 35.0% |
| !! | TGAATTCTGGCTTTCTTCTT+TGG | + | chr3.4:72421689-72421708 | None:intergenic | 35.0% |
| !! | TTCTGGAATTATAGTACTGG+AGG | - | chr3.4:72424185-72424204 | MS.gene29854:intron | 35.0% |
| AAAACTCACATAACATGGGC+GGG | + | chr3.4:72420870-72420889 | None:intergenic | 40.0% | |
| AAGGGTCCAAGCTGTAATAT+TGG | - | chr3.4:72424023-72424042 | MS.gene29854:intron | 40.0% | |
| ACTTCATGCTATGTTGCAAC+TGG | - | chr3.4:72421536-72421555 | MS.gene29854:intron | 40.0% | |
| AGTCCCAATATTGAGACTCA+TGG | + | chr3.4:72424255-72424274 | None:intergenic | 40.0% | |
| ATCAAACAGATAGGACACAG+TGG | - | chr3.4:72418925-72418944 | MS.gene29854:CDS | 40.0% | |
| ATCACAGCATAGATAAGAGG+AGG | + | chr3.4:72419482-72419501 | None:intergenic | 40.0% | |
| ATCTTCCCTATGTCACAAAG+TGG | - | chr3.4:72419556-72419575 | MS.gene29854:intron | 40.0% | |
| CAAAACTCACATAACATGGG+CGG | + | chr3.4:72420871-72420890 | None:intergenic | 40.0% | |
| CAACTCAATGGTGAACATGT+TGG | - | chr3.4:72421246-72421265 | MS.gene29854:CDS | 40.0% | |
| CACGTTTGATTACAGACCAT+CGG | - | chr3.4:72421918-72421937 | MS.gene29854:intron | 40.0% | |
| CCAAGCTGTAATATTGGACA+TGG | - | chr3.4:72424029-72424048 | MS.gene29854:intron | 40.0% | |
| CCATGTCCAATATTACAGCT+TGG | + | chr3.4:72424032-72424051 | None:intergenic | 40.0% | |
| CCTCTTATCTATGCTGTGAT+GGG | - | chr3.4:72419482-72419501 | MS.gene29854:CDS | 40.0% | |
| CTACCTTGTGGAATAGATTC+TGG | - | chr3.4:72423233-72423252 | MS.gene29854:intron | 40.0% | |
| CTCCGGATAGAATTTGATGA+TGG | + | chr3.4:72419925-72419944 | None:intergenic | 40.0% | |
| CTCTTATCTATGCTGTGATG+GGG | - | chr3.4:72419483-72419502 | MS.gene29854:CDS | 40.0% | |
| CTTCACCAACAAATCTGATG+TGG | - | chr3.4:72419868-72419887 | MS.gene29854:intron | 40.0% | |
| GACAACTTTGTTGACAACCT+TGG | - | chr3.4:72420027-72420046 | MS.gene29854:intron | 40.0% | |
| GACCGGTATTATTACACTAG+TGG | + | chr3.4:72423103-72423122 | None:intergenic | 40.0% | |
| GATCAACCACTTTGTGACAT+AGG | + | chr3.4:72419565-72419584 | None:intergenic | 40.0% | |
| GGTCAGCGAATTTATAAGAC+AGG | + | chr3.4:72424629-72424648 | None:intergenic | 40.0% | |
| GTTGGACAAGCAGCTAAAAT+TGG | - | chr3.4:72421264-72421283 | MS.gene29854:CDS | 40.0% | |
| TAACCGTCAATCCAAACATG+TGG | + | chr3.4:72424321-72424340 | None:intergenic | 40.0% | |
| TACCTACACAAGCCATATTG+AGG | + | chr3.4:72419317-72419336 | None:intergenic | 40.0% | |
| TCCTCTTATCTATGCTGTGA+TGG | - | chr3.4:72419481-72419500 | MS.gene29854:CDS | 40.0% | |
| TCTCCTTCAAAATGACCGAT+TGG | - | chr3.4:72422017-72422036 | MS.gene29854:CDS | 40.0% | |
| TCTTGTTCTGTACTACCTTG+TGG | - | chr3.4:72423221-72423240 | MS.gene29854:intron | 40.0% | |
| TGTGAATTACTACCCACCTT+GGG | + | chr3.4:72424527-72424546 | None:intergenic | 40.0% | |
| TTATAGGAAGCAATGGCTGT+TGG | - | chr3.4:72421425-72421444 | MS.gene29854:intron | 40.0% | |
| TTGGTCATTCGTATAAGCTC+TGG | - | chr3.4:72423783-72423802 | MS.gene29854:intron | 40.0% | |
| TTGTGAATTACTACCCACCT+TGG | + | chr3.4:72424528-72424547 | None:intergenic | 40.0% | |
| TTGTGTATTTGGATGTCCGA+TGG | + | chr3.4:72421937-72421956 | None:intergenic | 40.0% | |
| ! | ATCCTCAATATGGCTTGTGT+AGG | - | chr3.4:72419312-72419331 | MS.gene29854:CDS | 40.0% |
| ! | TTTGACTTCCTTGCTTGCAT+TGG | - | chr3.4:72422405-72422424 | MS.gene29854:intron | 40.0% |
| !! | ATTGGTCTTCAGCAGCTTAA+GGG | - | chr3.4:72419827-72419846 | MS.gene29854:CDS | 40.0% |
| !! | CTTCGGTGTCTTGTTTGTAT+CGG | - | chr3.4:72422434-72422453 | MS.gene29854:intron | 40.0% |
| !! | GAAATGTTAGCAATGGGTTG+TGG | - | chr3.4:72421494-72421513 | MS.gene29854:intron | 40.0% |
| !! | GTAGTCTCACTTTTATGCCA+CGG | + | chr3.4:72424233-72424252 | None:intergenic | 40.0% |
| !! | TAGTCTCACTTTTATGCCAC+GGG | + | chr3.4:72424232-72424251 | None:intergenic | 40.0% |
| !! | TTGGTTTTCAGACACAAGTG+TGG | - | chr3.4:72419454-72419473 | MS.gene29854:CDS | 40.0% |
| !!! | AGTTTTTTCCATAGAGGAGG+TGG | + | chr3.4:72418969-72418988 | None:intergenic | 40.0% |
| AAACTCACATAACATGGGCG+GGG | + | chr3.4:72420869-72420888 | None:intergenic | 45.0% | |
| ACTATACCTATCATGGGGTG+AGG | - | chr3.4:72423071-72423090 | MS.gene29854:intron | 45.0% | |
| AGTGACCCACTTGAGTATTC+TGG | + | chr3.4:72423965-72423984 | None:intergenic | 45.0% | |
| ATAATCCTCTCTGCACTTCC+AGG | - | chr3.4:72422336-72422355 | MS.gene29854:CDS | 45.0% | |
| ATACGAATGACCAAGATGCC+TGG | + | chr3.4:72423777-72423796 | None:intergenic | 45.0% | |
| ATAGAAGCAAGTATGGCCAC+AGG | + | chr3.4:72422318-72422337 | None:intergenic | 45.0% | |
| ATTAACCCTCACCCCATGAT+AGG | + | chr3.4:72423080-72423099 | None:intergenic | 45.0% | |
| CCACAGCTTCAGAAACAGTA+AGG | + | chr3.4:72424599-72424618 | None:intergenic | 45.0% | |
| CCCATCACAGCATAGATAAG+AGG | + | chr3.4:72419485-72419504 | None:intergenic | 45.0% | |
| CTACCAAGAACTTCTATCCC+AGG | + | chr3.4:72423696-72423715 | None:intergenic | 45.0% | |
| CTATACCTATCATGGGGTGA+GGG | - | chr3.4:72423072-72423091 | MS.gene29854:intron | 45.0% | |
| CTGCTGAAGACCAATCATGA+TGG | + | chr3.4:72419822-72419841 | None:intergenic | 45.0% | |
| GCTGTTATATTACACCCCTG+TGG | - | chr3.4:72422299-72422318 | MS.gene29854:CDS | 45.0% | |
| GCTTAAAGTGGCACACTTTG+TGG | - | chr3.4:72424548-72424567 | MS.gene29854:CDS | 45.0% | |
| GGACCAGAATCTATTCCACA+AGG | + | chr3.4:72423239-72423258 | None:intergenic | 45.0% | |
| TAGAAGCAAGTATGGCCACA+GGG | + | chr3.4:72422317-72422336 | None:intergenic | 45.0% | |
| TCACAGAAGGCTTGTGTTGT+TGG | + | chr3.4:72423723-72423742 | None:intergenic | 45.0% | |
| TGCTGCACTTGTAGGATTCA+TGG | - | chr3.4:72419787-72419806 | MS.gene29854:CDS | 45.0% | |
| TTGTCACATGCTGCACTTGT+AGG | - | chr3.4:72419779-72419798 | MS.gene29854:CDS | 45.0% | |
| ! | GCTTGCATTGGTGCTTTCTT+CGG | - | chr3.4:72422417-72422436 | MS.gene29854:intron | 45.0% |
| ! | TGCTAGCTTAAGCATACCTC+AGG | - | chr3.4:72419151-72419170 | MS.gene29854:intron | 45.0% |
| ! | TTAATCCTGGAAGTGCAGAG+AGG | + | chr3.4:72422344-72422363 | None:intergenic | 45.0% |
| ! | TTCCATAGAGGAGGTGGATT+TGG | + | chr3.4:72418963-72418982 | None:intergenic | 45.0% |
| ! | TTGCAGGTTGGGATTTCTTG+TGG | - | chr3.4:72419751-72419770 | MS.gene29854:CDS | 45.0% |
| ! | TTGGTCTTCAGCAGCTTAAG+GGG | - | chr3.4:72419828-72419847 | MS.gene29854:CDS | 45.0% |
| !! | AGAAAGCACCAATGCAAGCA+AGG | + | chr3.4:72422416-72422435 | None:intergenic | 45.0% |
| !! | AGTTTGCTATGGTGAACCCA+AGG | - | chr3.4:72424508-72424527 | MS.gene29854:CDS | 45.0% |
| !! | CCTTACTGTTTCTGAAGCTG+TGG | - | chr3.4:72424596-72424615 | MS.gene29854:CDS | 45.0% |
| !! | GATTGGTCTTCAGCAGCTTA+AGG | - | chr3.4:72419826-72419845 | MS.gene29854:CDS | 45.0% |
| !! | ATAAAATTGTTAATTAATTT+AGG | + | chr3.4:72422933-72422952 | None:intergenic | 5.0% |
| !! | TAAAATTGTTAATTAATTTA+GGG | + | chr3.4:72422932-72422951 | None:intergenic | 5.0% |
| !!! | AATTTTAAAAAAAAAAACTA+AGG | + | chr3.4:72421342-72421361 | None:intergenic | 5.0% |
| !!! | TAAATTAATTAACAATTTTA+TGG | - | chr3.4:72422932-72422951 | MS.gene29854:intron | 5.0% |
| !!! | TATTTTATTTGTTTTATAAT+TGG | - | chr3.4:72422148-72422167 | MS.gene29854:intron | 5.0% |
| !!! | TTATAATTTTTTTCAAAAAT+TGG | - | chr3.4:72422564-72422583 | MS.gene29854:intron | 5.0% |
| AGAAGCAAGTATGGCCACAG+GGG | + | chr3.4:72422316-72422335 | None:intergenic | 50.0% | |
| AGCAGCTTAAGGGGTTGCTT+GGG | - | chr3.4:72419837-72419856 | MS.gene29854:intron | 50.0% | |
| AGCAGTGACACTACAGCTAC+AGG | + | chr3.4:72419533-72419552 | None:intergenic | 50.0% | |
| CACCAAATCCACCTCCTCTA+TGG | - | chr3.4:72418958-72418977 | MS.gene29854:CDS | 50.0% | |
| CGACCTGGGATAGAAGTTCT+TGG | - | chr3.4:72423690-72423709 | MS.gene29854:CDS | 50.0% | |
| GACACTAGAGGAGCAATAGC+TGG | + | chr3.4:72421117-72421136 | None:intergenic | 50.0% | |
| GCACTTGTAGGATTCATGGC+AGG | - | chr3.4:72419791-72419810 | MS.gene29854:CDS | 50.0% | |
| GCTATGTTGCAACTGGTGAG+TGG | - | chr3.4:72421543-72421562 | MS.gene29854:intron | 50.0% | |
| TACAAGCACTCCAGGCATCT+TGG | - | chr3.4:72423764-72423783 | MS.gene29854:intron | 50.0% | |
| TACTGGAGGAACTGCACAAG+AGG | - | chr3.4:72424199-72424218 | MS.gene29854:intron | 50.0% | |
| TGCTATGGTGAACCCAAGGT+GGG | - | chr3.4:72424512-72424531 | MS.gene29854:CDS | 50.0% | |
| TTGCTATGGTGAACCCAAGG+TGG | - | chr3.4:72424511-72424530 | MS.gene29854:CDS | 50.0% | |
| ! | ATGGGTTGTGGGAACATTGC+AGG | - | chr3.4:72421506-72421525 | MS.gene29854:intron | 50.0% |
| CAGCAGCTTAAGGGGTTGCT+TGG | - | chr3.4:72419836-72419855 | MS.gene29854:intron | 55.0% | |
| GCAGGTGCAGCCATCATGAT+TGG | - | chr3.4:72419809-72419828 | MS.gene29854:CDS | 55.0% | |
| ! | CCTGGAGTGCTTGTAGCCAT+GGG | + | chr3.4:72423759-72423778 | None:intergenic | 55.0% |
| CACAAGAGGTTGCTCTCCCG+TGG | - | chr3.4:72424213-72424232 | MS.gene29854:intron | 60.0% | |
| CCCATGGCTACAAGCACTCC+AGG | - | chr3.4:72423756-72423775 | MS.gene29854:intron | 60.0% | |
| ! | GCCTGGAGTGCTTGTAGCCA+TGG | + | chr3.4:72423760-72423779 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72418852 | 72424653 | 72418852 | ID=MS.gene29854 |
| chr3.4 | mRNA | 72418852 | 72424653 | 72418852 | ID=MS.gene29854.t1;Parent=MS.gene29854 |
| chr3.4 | exon | 72424493 | 72424653 | 72424493 | ID=MS.gene29854.t1.exon1;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72424493 | 72424653 | 72424493 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72424365 | 72424414 | 72424365 | ID=MS.gene29854.t1.exon2;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72424365 | 72424414 | 72424365 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72423833 | 72424040 | 72423833 | ID=MS.gene29854.t1.exon3;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72423833 | 72424040 | 72423833 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72423559 | 72423748 | 72423559 | ID=MS.gene29854.t1.exon4;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72423559 | 72423748 | 72423559 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72422509 | 72422574 | 72422509 | ID=MS.gene29854.t1.exon5;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72422509 | 72422574 | 72422509 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72422191 | 72422421 | 72422191 | ID=MS.gene29854.t1.exon6;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72422191 | 72422421 | 72422191 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72421948 | 72422074 | 72421948 | ID=MS.gene29854.t1.exon7;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72421948 | 72422074 | 72421948 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72421026 | 72421312 | 72421026 | ID=MS.gene29854.t1.exon8;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72421026 | 72421312 | 72421026 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72419661 | 72419854 | 72419661 | ID=MS.gene29854.t1.exon9;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72419661 | 72419854 | 72419661 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72419451 | 72419539 | 72419451 | ID=MS.gene29854.t1.exon10;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72419451 | 72419539 | 72419451 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72419263 | 72419339 | 72419263 | ID=MS.gene29854.t1.exon11;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72419263 | 72419339 | 72419263 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| chr3.4 | exon | 72418852 | 72418995 | 72418852 | ID=MS.gene29854.t1.exon12;Parent=MS.gene29854.t1 |
| chr3.4 | CDS | 72418852 | 72418995 | 72418852 | ID=cds.MS.gene29854.t1;Parent=MS.gene29854.t1 |
| Gene Sequence |
| Protein sequence |
