AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30560.t1 MTR_4g064780 91.574 807 16 3 1 758 1 804 0.0 1502
MS.gene30560.t1 MTR_4g064780 89.441 644 16 3 1 595 1 641 0.0 1163
MS.gene30560.t1 MTR_2g097700 72.754 690 139 1 118 758 92 781 0.0 1072
MS.gene30560.t1 MTR_5g013940 78.000 100 22 0 593 692 20 119 2.78e-51 177
MS.gene30560.t1 MTR_2g098110 22.945 584 354 20 211 742 118 657 9.87e-16 81.6
MS.gene30560.t1 MTR_1g070230 32.487 197 110 7 553 742 157 337 3.14e-14 75.5
MS.gene30560.t1 MTR_2g087590 26.820 261 151 7 504 742 102 344 6.40e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30560.t1 AT3G46740 75.797 690 118 1 118 758 129 818 0.0 1108
MS.gene30560.t1 AT4G09080 61.353 414 146 6 347 758 6 407 7.06e-173 503
MS.gene30560.t1 AT4G09080 62.594 401 136 6 360 758 8 396 3.33e-172 500
MS.gene30560.t1 AT4G09080 70.154 325 94 3 436 758 2 325 7.96e-163 473
MS.gene30560.t1 AT1G35860 47.400 500 126 8 269 733 2 399 7.89e-139 415
MS.gene30560.t1 AT5G19620 23.438 576 329 22 239 755 205 727 2.13e-19 93.6
MS.gene30560.t1 AT3G44160 33.480 227 119 9 504 714 102 312 1.47e-16 82.8

Find 252 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATACACCACCTGGTTTA+AGG 0.181117 4.2:-40529885 None:intergenic
TATTACCTCGAGGATGTTTC+TGG 0.196346 4.2:-40532975 None:intergenic
TGAGGTTTATAAAGAGATTA+AGG 0.210672 4.2:+40530206 MS.gene30560:CDS
GAATCCCAATCTTGTGATTT+TGG 0.214936 4.2:-40529721 None:intergenic
CGTCAGAGTAAATTCACTTA+TGG 0.227562 4.2:+40531426 MS.gene30560:CDS
TGTGCTCAGGTTGTTAATTT+TGG 0.233516 4.2:+40530321 MS.gene30560:CDS
TACTTCTAGGCCTTGTCTTT+TGG 0.238382 4.2:+40530179 MS.gene30560:CDS
TAAAATTACCTCAGTGATAT+TGG 0.265879 4.2:-40531304 None:intergenic
GAGGCGAAGGAGGTGATTTC+TGG 0.269875 4.2:+40529659 MS.gene30560:CDS
TATGAGTGAAAAGGAGAAAA+TGG 0.277825 4.2:+40530113 MS.gene30560:CDS
GGATGATCTTGCATTTAAAA+TGG 0.280908 4.2:+40531125 MS.gene30560:intron
GGAGTATGCACATCCGTATT+TGG 0.292124 4.2:+40531146 MS.gene30560:CDS
CTAGGTTGTTGCAGAAGATT+AGG 0.307809 4.2:+40530259 MS.gene30560:CDS
CCGGTATTCACTGGTGGGCC+GGG 0.317538 4.2:+40531234 MS.gene30560:CDS
TTGAATCCGCTTAGTTTGTT+TGG 0.330435 4.2:-40529775 None:intergenic
GAAACTGAGTCAAAGTTAAT+TGG 0.330853 4.2:-40532787 None:intergenic
GAAAAGGGAGGAGGAGTTAG+TGG 0.331883 4.2:-40529482 None:intergenic
TCCGGTATTCACTGGTGGGC+CGG 0.335358 4.2:+40531233 MS.gene30560:CDS
ATGGGTCAGGGGTCCTCTTA+TGG 0.335391 4.2:+40533222 MS.gene30560:CDS
TTCTCCGGAGGTGGCGGCGG+AGG 0.339863 4.2:+40529586 MS.gene30560:CDS
TCCGGAGGTGGCGGCGGAGG+TGG 0.343459 4.2:+40529589 MS.gene30560:CDS
CGAAACACCAAGACGAAAAT+CGG 0.346482 4.2:+40529832 MS.gene30560:CDS
GCAGAACATGGCACCGATCT+AGG 0.359815 4.2:+40533153 MS.gene30560:CDS
TACACGTGTGTGCCTTTAAT+AGG 0.368358 4.2:-40533123 None:intergenic
GAAGAGAGCAGAGGCGGCGG+AGG 0.384279 4.2:-40529536 None:intergenic
ACCGAGTGGAGTATTGTTCC+TGG 0.393424 4.2:+40530759 MS.gene30560:CDS
TGGAAGCAGGAACATGTTCC+AGG 0.393764 4.2:+40531644 MS.gene30560:CDS
GGATTGAATAGATCTCTTAC+TGG 0.396182 4.2:+40530949 MS.gene30560:CDS
GGAGGTGGCGGCGGAGGTGG+AGG 0.397183 4.2:+40529592 MS.gene30560:CDS
TTCAATTTCTCCGGAGGTGG+CGG 0.406615 4.2:+40529580 MS.gene30560:CDS
GACAAGAGAGGGAGTATAAG+AGG 0.407066 4.2:+40530148 MS.gene30560:CDS
CGGTATTCACTGGTGGGCCG+GGG 0.409083 4.2:+40531235 MS.gene30560:CDS
CCAGTACCACTGAGGGTTGT+TGG 0.410133 4.2:-40531549 None:intergenic
TCTTCCTCCGGTGGTGGAGG+TGG 0.410189 4.2:+40529616 MS.gene30560:CDS
TGGATGAAGTGCCCTCCATA+TGG 0.410464 4.2:+40531259 MS.gene30560:CDS
GTTGTAACCCCTTACAGAAT+AGG 0.411697 4.2:-40532933 None:intergenic
TCCACCTCCGCCGCCACCTC+CGG 0.412567 4.2:-40529590 None:intergenic
CTTCCCTCATTCTTCTCATC+AGG 0.414103 4.2:-40530681 None:intergenic
GGTATTCACTGGTGGGCCGG+GGG 0.417635 4.2:+40531236 MS.gene30560:CDS
TTGTAACCCCTTACAGAATA+GGG 0.418439 4.2:-40532932 None:intergenic
AGAGGAGGATTGATACTTCT+AGG 0.418613 4.2:+40530166 MS.gene30560:CDS
AATTGGTGACGGTTAAAGAA+TGG 0.420841 4.2:-40532770 None:intergenic
TCAGTCGAAACCGGTTGAAA+TGG 0.421087 4.2:+40530083 MS.gene30560:CDS
CTCCCCGATTTCAATTTCTC+CGG 0.421890 4.2:+40529571 MS.gene30560:CDS
AATGTTTGAGAAGGTTGATA+TGG 0.422128 4.2:+40529954 MS.gene30560:CDS
GAGGTACGTATACCTATTAA+AGG 0.423998 4.2:+40533111 MS.gene30560:CDS
CTTCCTCCACAGACTTCAAC+TGG 0.424159 4.2:-40532811 None:intergenic
ACGAACCAAAATCACAAGAT+TGG 0.424406 4.2:+40529716 MS.gene30560:CDS
GGTTACAACATGGGTGAGAT+TGG 0.425561 4.2:+40532947 MS.gene30560:CDS
CTTGTCCTCCATGGTCACTA+TGG 0.425624 4.2:+40532860 MS.gene30560:CDS
ATGTATCAATGTAGGGTTGA+TGG 0.426742 4.2:+40530059 MS.gene30560:CDS
ACCATTGGAACAGATATGAT+TGG 0.428498 4.2:-40531484 None:intergenic
CAGGGGTCCTCTTATGGTGC+TGG 0.428552 4.2:+40533228 MS.gene30560:CDS
TTACGGCGGTGAGGAGGAGG+AGG 0.430121 4.2:-40529382 None:intergenic
GGGAGATGTGGTGGTTGTTA+CGG 0.430493 4.2:-40529399 None:intergenic
TGAATACCGGACTCAGCTTT+CGG 0.432123 4.2:-40531221 None:intergenic
ACCTCCGGAGAAATTGAAAT+CGG 0.434355 4.2:-40529575 None:intergenic
GTATACACCACCTGGTTTAA+GGG 0.435812 4.2:-40529884 None:intergenic
CGCTAATGTTCCATCAGCAT+TGG 0.435932 4.2:-40529986 None:intergenic
ATTGGTGACGGTTAAAGAAT+GGG 0.436136 4.2:-40532769 None:intergenic
CTCAAAATCTTTCTCCAAAA+CGG 0.437268 4.2:-40533320 None:intergenic
GAGGAAGAGAGCAGAGGCGG+CGG 0.437418 4.2:-40529539 None:intergenic
GAAATCCGACAGAAGTCTAT+AGG 0.441636 4.2:+40533196 MS.gene30560:CDS
CTTCATACCAGCACCATAAG+AGG 0.442191 4.2:-40533235 None:intergenic
GAGGTTTATAAAGAGATTAA+GGG 0.444103 4.2:+40530207 MS.gene30560:CDS
AGTCTATAGGAGAATGGGTC+AGG 0.444715 4.2:+40533209 MS.gene30560:CDS
GGTAAGACGGTTATGTTAGC+TGG 0.445300 4.2:-40529754 None:intergenic
AGGTTTAGATGTATCAATGT+AGG 0.447359 4.2:+40530051 MS.gene30560:CDS
AGGAGGAGGAGGGGTTGAGA+TGG 0.448582 4.2:-40529371 None:intergenic
CTGCAGGCTTCGCTTCAGCC+AGG 0.449356 4.2:+40530892 MS.gene30560:intron
ACCAGCACGGTCAACCCATA+TGG 0.451429 4.2:-40531274 None:intergenic
TTAATCTCTTTATAAACCTC+AGG 0.452420 4.2:-40530204 None:intergenic
TCCTCCGGTGGTGGAGGTGG+TGG 0.454969 4.2:+40529619 MS.gene30560:CDS
TTTCTTTCGCTGAGAGTATG+TGG 0.455333 4.2:+40530016 MS.gene30560:CDS
AGCAGCTTACACGGAGAGTT+CGG 0.456701 4.2:-40531191 None:intergenic
GATTTCAATTTCTCCGGAGG+TGG 0.457365 4.2:+40529577 MS.gene30560:CDS
TAAAGAGTTGGAGCAGAAAT+CGG 0.460513 4.2:+40530725 MS.gene30560:CDS
TCGTCGGCGATTGCGGTTGA+CGG 0.461672 4.2:-40529697 None:intergenic
TGAGATTAAGCTTAAAGAGT+TGG 0.462130 4.2:+40530713 MS.gene30560:CDS
CCAACAACCCTCAGTGGTAC+TGG 0.463318 4.2:+40531549 MS.gene30560:CDS
TATGGTGCTGGTATGAAGCT+TGG 0.464083 4.2:+40533240 MS.gene30560:CDS
AGAAGAGAGGTTGCATTTGA+CGG 0.464588 4.2:-40529431 None:intergenic
ATATCAGGATCCATTTCAAC+CGG 0.464958 4.2:-40530093 None:intergenic
AAGGGGATGTTGAGTAAGCA+AGG 0.465253 4.2:+40530225 MS.gene30560:CDS
CCGGTGGTGGAGGTGGTGGT+TGG 0.467128 4.2:+40529623 MS.gene30560:CDS
GGATCTTCCTCCGGTGGTGG+AGG 0.469677 4.2:+40529613 MS.gene30560:CDS
TCTGCACTAATTCCTCCATT+AGG 0.471078 4.2:-40531519 None:intergenic
AATTTCTCCGGAGGTGGCGG+CGG 0.471602 4.2:+40529583 MS.gene30560:CDS
TGAGATGGTTGTTAAGCGAT+TGG 0.471960 4.2:-40529356 None:intergenic
GGTCAAAGAGTATTGCCTAA+TGG 0.474904 4.2:+40531504 MS.gene30560:CDS
AGGCAATACTCTTTGACCAT+TGG 0.475159 4.2:-40531499 None:intergenic
CGAACCAAAATCACAAGATT+GGG 0.476541 4.2:+40529717 MS.gene30560:CDS
GTTGATCATAACTCAGGAAC+AGG 0.476580 4.2:+40533285 MS.gene30560:CDS
TGTTGCAGAAGATTAGGGAT+AGG 0.477600 4.2:+40530265 MS.gene30560:CDS
CAGAAATGGTATCATGATGA+AGG 0.480291 4.2:+40530291 MS.gene30560:CDS
TTTGTGAACGGAGCTATAGT+TGG 0.480304 4.2:+40531624 MS.gene30560:CDS
GGAGGATCTTCCTCCGGTGG+TGG 0.481721 4.2:+40529610 MS.gene30560:CDS
GGATGTTGAGTAAGCAAGGG+AGG 0.483099 4.2:+40530229 MS.gene30560:CDS
TTGTTACGGCGGTGAGGAGG+AGG 0.484441 4.2:-40529385 None:intergenic
TAGGTTGTTGCAGAAGATTA+GGG 0.486333 4.2:+40530260 MS.gene30560:CDS
ATTCACTTATGGATTAGTAA+TGG 0.488117 4.2:+40531437 MS.gene30560:CDS
GACAGAAGTCTATAGGAGAA+TGG 0.488499 4.2:+40533203 MS.gene30560:CDS
TGGAGTATTGTTCCTGGGCG+AGG 0.491841 4.2:+40530765 MS.gene30560:CDS
CCTCCGGAGAAATTGAAATC+GGG 0.491984 4.2:-40529574 None:intergenic
TTCGCCGCAAATACCAAAGT+TGG 0.492832 4.2:-40530795 None:intergenic
GTATTGTTCCTGGGCGAGGA+GGG 0.493554 4.2:+40530769 MS.gene30560:CDS
GCGAGGAGGGCGTCCAACTT+TGG 0.496872 4.2:+40530782 MS.gene30560:CDS
GCATTTGACGGAGGAAGGAC+GGG 0.496936 4.2:-40529419 None:intergenic
GTTTCTCCAGTTGAAGTCTG+TGG 0.496953 4.2:+40532805 MS.gene30560:CDS
GTTGTTTGTGAGGTTGTTGA+AGG 0.498736 4.2:+40530363 MS.gene30560:CDS
GCTTAGTTTGTTTGGTAAGA+CGG 0.499756 4.2:-40529767 None:intergenic
GGATCCTGATATGAGTGAAA+AGG 0.500579 4.2:+40530104 MS.gene30560:CDS
GTTGCAGAAGATTAGGGATA+GGG 0.502834 4.2:+40530266 MS.gene30560:CDS
ACAGAAGTCTATAGGAGAAT+GGG 0.503850 4.2:+40533204 MS.gene30560:CDS
TAAGCGATTGGAGGCGAAGA+AGG 0.506098 4.2:-40529344 None:intergenic
CCCGGCCCACCAGTGAATAC+CGG 0.506852 4.2:-40531234 None:intergenic
CTTCCTACAGCTGGCAGCTG+AGG 0.508063 4.2:+40533092 MS.gene30560:intron
TTCTGTAAGGGGTTACAACA+TGG 0.513783 4.2:+40532937 MS.gene30560:CDS
TCATTCTTCTCATCAGGCCG+CGG 0.514700 4.2:-40530675 None:intergenic
TGCATTTGACGGAGGAAGGA+CGG 0.514871 4.2:-40529420 None:intergenic
TCATTTACACCATCCAAATA+CGG 0.518980 4.2:-40531159 None:intergenic
GGACTATTACATTTGAACAT+AGG 0.519926 4.2:+40530917 MS.gene30560:CDS
TTTGAGAAGGTTGATATGGA+AGG 0.520196 4.2:+40529958 MS.gene30560:CDS
TGGTACTGGTATAGATAAGA+TGG 0.520498 4.2:+40531563 MS.gene30560:CDS
TCAAAACTGCAGGTAGATCA+AGG 0.521033 4.2:+40532725 MS.gene30560:intron
GTTGATGGGTCAGTCGAAAC+CGG 0.521835 4.2:+40530074 MS.gene30560:CDS
CTGCAGGTAGATCAAGGCCT+TGG 0.525854 4.2:+40532731 MS.gene30560:intron
GGTTTAGATGTATCAATGTA+GGG 0.527431 4.2:+40530052 MS.gene30560:CDS
TCCATATGGGTTGACCGTGC+TGG 0.529325 4.2:+40531273 MS.gene30560:CDS
TGTATCAATGTAGGGTTGAT+GGG 0.529350 4.2:+40530060 MS.gene30560:CDS
TTAGGGATAGGGTTCAGAAA+TGG 0.531784 4.2:+40530277 MS.gene30560:CDS
ACCAATCATATCTGTTCCAA+TGG 0.531948 4.2:+40531483 MS.gene30560:CDS
AGAGTAAAAGCATCATAACT+TGG 0.532470 4.2:-40532902 None:intergenic
AAGCTGAGTCCGGTATTCAC+TGG 0.532807 4.2:+40531225 MS.gene30560:CDS
CCCGATTTCAATTTCTCCGG+AGG 0.533340 4.2:+40529574 MS.gene30560:CDS
TCGTCTTGGTGTTTCGATCG+AGG 0.534927 4.2:-40529825 None:intergenic
AGGTTGCATTTGACGGAGGA+AGG 0.535431 4.2:-40529424 None:intergenic
TTGTTTGTGAGGTTGTTGAA+GGG 0.537219 4.2:+40530364 MS.gene30560:CDS
GATAGCAACGGTGGCGGTGA+GGG 0.537454 4.2:-40529512 None:intergenic
AAGAGAGGGAGTATAAGAGG+AGG 0.538246 4.2:+40530151 MS.gene30560:CDS
CAACAGCCGAAAGCTGAGTC+CGG 0.538632 4.2:+40531215 MS.gene30560:CDS
GGCTGTTGAAGCAGCTTACA+CGG 0.541865 4.2:-40531200 None:intergenic
CGGAGGAAGGACGGGAGATG+TGG 0.541969 4.2:-40529411 None:intergenic
AATGGAGGAATTAGTGCAGA+TGG 0.543155 4.2:+40531522 MS.gene30560:CDS
GATGGTTGTTAAGCGATTGG+AGG 0.545054 4.2:-40529353 None:intergenic
GGAATCATTGTTATTGTCGT+CGG 0.545721 4.2:-40529458 None:intergenic
GTTGGACGCCCTCCTCGCCC+AGG 0.555798 4.2:-40530777 None:intergenic
AGCAAGGGAGGGTTAGTGCT+AGG 0.557451 4.2:+40530241 MS.gene30560:CDS
CCACCAGTGCTTGTCCTCCA+TGG 0.557742 4.2:+40532851 MS.gene30560:CDS
TACGGCGGTGAGGAGGAGGA+GGG 0.558931 4.2:-40529381 None:intergenic
AGGACAAGCACTGGTGGTGG+TGG 0.558995 4.2:-40532845 None:intergenic
CAGGCTTCGCTTCAGCCAGG+AGG 0.559209 4.2:+40530895 MS.gene30560:intron
TTCTTTCGCTGAGAGTATGT+GGG 0.559574 4.2:+40530017 MS.gene30560:CDS
GATGTTGAGTAAGCAAGGGA+GGG 0.559985 4.2:+40530230 MS.gene30560:CDS
CCCAGGAACAATACTCCACT+CGG 0.560072 4.2:-40530760 None:intergenic
GAAGGGAAAACCAATGCTGA+TGG 0.561077 4.2:+40529976 MS.gene30560:CDS
TTGAGAAGGTTGATATGGAA+GGG 0.561158 4.2:+40529959 MS.gene30560:CDS
ACACGGAGAGTTCGGTTGCG+TGG 0.562344 4.2:-40531183 None:intergenic
GGATGAAGTGCCCTCCATAT+GGG 0.563784 4.2:+40531260 MS.gene30560:CDS
TGGTTGTTACGGCGGTGAGG+AGG 0.565196 4.2:-40529388 None:intergenic
GTGTATGCCTTTGCAGAACA+TGG 0.566174 4.2:+40533141 MS.gene30560:CDS
ACCACCACCTCCACCACCGG+AGG 0.567000 4.2:-40529620 None:intergenic
TAGCAACTTCTTGAATCCTC+AGG 0.567074 4.2:+40530984 MS.gene30560:CDS
ATTGAAATCGGGGAGGGAGT+CGG 0.570479 4.2:-40529563 None:intergenic
GGTCACTATGGTGGTTGTGT+AGG 0.572314 4.2:+40532872 MS.gene30560:CDS
AGGCTTCGCTTCAGCCAGGA+GGG 0.573416 4.2:+40530896 MS.gene30560:intron
GAGGGCACTTCATCCACCCC+CGG 0.574911 4.2:-40531252 None:intergenic
AAGTCTGTGGAGGAAGGTGC+TGG 0.575143 4.2:+40532818 MS.gene30560:CDS
GAGTCAAAGTTAATTGGTGA+CGG 0.579143 4.2:-40532781 None:intergenic
CCAACCACCACCTCCACCAC+CGG 0.579282 4.2:-40529623 None:intergenic
CCGAGTGGAGTATTGTTCCT+GGG 0.581393 4.2:+40530760 MS.gene30560:CDS
CAGTTGAAGTCTGTGGAGGA+AGG 0.582370 4.2:+40532812 MS.gene30560:CDS
AAGGGAGGAGGAGTTAGTGG+AGG 0.582557 4.2:-40529479 None:intergenic
GTAGATCAAGGCCTTGGTGT+TGG 0.582725 4.2:+40532737 MS.gene30560:CDS
AGTATTGTTCCTGGGCGAGG+AGG 0.583721 4.2:+40530768 MS.gene30560:CDS
AGGGGATGTTGAGTAAGCAA+GGG 0.584583 4.2:+40530226 MS.gene30560:CDS
GTCTATAGGAGAATGGGTCA+GGG 0.584875 4.2:+40533210 MS.gene30560:CDS
GGAAGTTCAAAAGATGTCAA+AGG 0.585343 4.2:+40533174 MS.gene30560:CDS
CTGAGTCCGGTATTCACTGG+TGG 0.585808 4.2:+40531228 MS.gene30560:CDS
GCGGCCTGATGAGAAGAATG+AGG 0.586532 4.2:+40530677 MS.gene30560:CDS
TTTAACAACAACGGAGGCGA+AGG 0.587335 4.2:+40529646 MS.gene30560:CDS
TCAAATGTAATAGTCCCTCC+TGG 0.588321 4.2:-40530910 None:intergenic
ATTCTCCTATAGACTTCTGT+CGG 0.588523 4.2:-40533201 None:intergenic
ACGGCGGTGAGGAGGAGGAG+GGG 0.589111 4.2:-40529380 None:intergenic
ACGGAGCTATAGTTGGAAGC+AGG 0.591154 4.2:+40531631 MS.gene30560:CDS
CTAGAAAGTTTAGCTACATG+TGG 0.591287 4.2:+40529931 MS.gene30560:CDS
TATGCACATCCGTATTTGGA+TGG 0.591352 4.2:+40531150 MS.gene30560:CDS
CGGCCTGATGAGAAGAATGA+GGG 0.591730 4.2:+40530678 MS.gene30560:CDS
AGGTTTATAAAGAGATTAAG+GGG 0.594005 4.2:+40530208 MS.gene30560:CDS
ATCATTGTTATTGTCGTCGG+AGG 0.594006 4.2:-40529455 None:intergenic
GAAGGAAGAAGAAGAAGACA+TGG 0.595924 4.2:-40529326 None:intergenic
TGTTTGTGAGGTTGTTGAAG+GGG 0.596101 4.2:+40530365 MS.gene30560:CDS
CACAACCACCATAGTGACCA+TGG 0.599148 4.2:-40532868 None:intergenic
AGGAAGGACGGGAGATGTGG+TGG 0.599315 4.2:-40529408 None:intergenic
ATCGGTGCCATGTTCTGCAA+AGG 0.600282 4.2:-40533148 None:intergenic
TACGCGCGAGGTTGTTTGTG+AGG 0.602411 4.2:+40530353 MS.gene30560:CDS
TGAGTCCGGTATTCACTGGT+GGG 0.604356 4.2:+40531229 MS.gene30560:CDS
GGAGGAGATAGCAACGGTGG+CGG 0.605582 4.2:-40529518 None:intergenic
GGAGGTGGAGGATCTTCCTC+CGG 0.605595 4.2:+40529604 MS.gene30560:CDS
GGTGAGGAAGAGAGCAGAGG+CGG 0.607374 4.2:-40529542 None:intergenic
AGCACGGTCAACCCATATGG+AGG 0.608832 4.2:-40531271 None:intergenic
TGACCATGGAGGACAAGCAC+TGG 0.609873 4.2:-40532854 None:intergenic
ACCTCAGGAGCCAAAAGACA+AGG 0.610574 4.2:-40530189 None:intergenic
TATGCGGTTGATCATAACTC+AGG 0.612570 4.2:+40533279 MS.gene30560:CDS
TTTACAGGCTAATATTACAA+GGG 0.614814 4.2:+40531590 MS.gene30560:CDS
ATCTATACCAGTACCACTGA+GGG 0.614999 4.2:-40531556 None:intergenic
GTCCTCCATGGTCACTATGG+TGG 0.615702 4.2:+40532863 MS.gene30560:CDS
AACAACAACGGAGGCGAAGG+AGG 0.618916 4.2:+40529649 MS.gene30560:CDS
CTCCGGAGAAATTGAAATCG+GGG 0.619965 4.2:-40529573 None:intergenic
CACACGCGCTCAGCTTCAGA+AGG 0.620020 4.2:+40529906 MS.gene30560:CDS
GTCGGTGAGGAAGAGAGCAG+AGG 0.620047 4.2:-40529545 None:intergenic
TGAAGGGTATGCTTGTGCTC+AGG 0.620080 4.2:+40530308 MS.gene30560:CDS
CAAAGAGTATTGCCTAATGG+AGG 0.624544 4.2:+40531507 MS.gene30560:CDS
TCTGTAAGGGGTTACAACAT+GGG 0.625335 4.2:+40532938 MS.gene30560:CDS
AGAAATGGTATCATGATGAA+GGG 0.626329 4.2:+40530292 MS.gene30560:CDS
GACATGGTATCCCTTAAACC+AGG 0.627094 4.2:+40529874 MS.gene30560:CDS
GCGCGTGTGTATACACCACC+TGG 0.629270 4.2:-40529892 None:intergenic
GTACCACTGAGGGTTGTTGG+AGG 0.632265 4.2:-40531546 None:intergenic
GGTGGAGGATCTTCCTCCGG+TGG 0.632685 4.2:+40529607 MS.gene30560:CDS
AGAGAGGTTGCATTTGACGG+AGG 0.632779 4.2:-40529428 None:intergenic
TGGTGGTTGTTACGGCGGTG+AGG 0.633694 4.2:-40529391 None:intergenic
TCTCCAGTTGAAGTCTGTGG+AGG 0.634494 4.2:+40532808 MS.gene30560:CDS
AGATAGCAACGGTGGCGGTG+AGG 0.634827 4.2:-40529513 None:intergenic
TGGAGGACAAGCACTGGTGG+TGG 0.638082 4.2:-40532848 None:intergenic
GGAGAAATTGAAATCGGGGA+GGG 0.642007 4.2:-40529569 None:intergenic
TTTGAACATAGGAATCTGCA+AGG 0.642514 4.2:+40530928 MS.gene30560:CDS
GTCTTACCAAACAAACTAAG+CGG 0.645275 4.2:+40529769 MS.gene30560:CDS
CCAACATTGAAGTGAATCCG+CGG 0.651264 4.2:+40530658 MS.gene30560:intron
AATCGGGGAGGGAGTCGGTG+AGG 0.652729 4.2:-40529558 None:intergenic
TCTATAGGAGAATGGGTCAG+GGG 0.660220 4.2:+40533211 MS.gene30560:CDS
GGTGGTTGGTTTAACAACAA+CGG 0.661909 4.2:+40529637 MS.gene30560:CDS
CGGCTGAAGTTAGTACCGAG+TGG 0.665430 4.2:+40530745 MS.gene30560:CDS
GGAAATTGCTGCCAACACCA+AGG 0.665668 4.2:-40532748 None:intergenic
TGGCAATCTGAATACGCGCG+AGG 0.668463 4.2:+40530341 MS.gene30560:CDS
GCACGGTCAACCCATATGGA+GGG 0.670151 4.2:-40531270 None:intergenic
TACATGTGGAATGTTTGAGA+AGG 0.671038 4.2:+40529945 MS.gene30560:CDS
CCATGGAGGACAAGCACTGG+TGG 0.671793 4.2:-40532851 None:intergenic
CGGAGAAATTGAAATCGGGG+AGG 0.675200 4.2:-40529570 None:intergenic
GGCGGCGGAGGAGATAGCAA+CGG 0.684334 4.2:-40529524 None:intergenic
AGATGTGGTGGTTGTTACGG+CGG 0.685023 4.2:-40529396 None:intergenic
GATAACACAAGGTTTGTGAA+CGG 0.685190 4.2:+40531612 MS.gene30560:CDS
TTTAGTGAGAGCAGAATATG+CGG 0.685534 4.2:+40533263 MS.gene30560:CDS
GGACCTCCAACAACCCTCAG+TGG 0.685641 4.2:+40531543 MS.gene30560:CDS
GGCGGAGGAGATAGCAACGG+TGG 0.693873 4.2:-40529521 None:intergenic
GGTTGGTTTAACAACAACGG+AGG 0.702684 4.2:+40529640 MS.gene30560:CDS
ATATTACAAGGGATAACACA+AGG 0.704360 4.2:+40531601 MS.gene30560:CDS
TGTCGTCGGAGGAAGAAGAG+AGG 0.711205 4.2:-40529444 None:intergenic
TATCTATACCAGTACCACTG+AGG 0.712371 4.2:-40531557 None:intergenic
ATGGTATCCCTTAAACCAGG+TGG 0.723088 4.2:+40529877 MS.gene30560:CDS
AGCAGCCAGAAACATCCTCG+AGG 0.763048 4.2:+40532970 MS.gene30560:CDS
TGTAAAAGCCAATATCACTG+AGG 0.767187 4.2:+40531296 MS.gene30560:CDS
AACCACCATAGTGACCATGG+AGG 0.809946 4.2:-40532865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAACAAGTATAATAAAA+TGG - chr4.2:40531041-40531060 None:intergenic 15.0%
!! AAGAACAAGTATAATAAAAT+GGG - chr4.2:40531040-40531059 None:intergenic 15.0%
!! ATAAAATAGATATTATCGAA+AGG - chr4.2:40531891-40531910 None:intergenic 15.0%
!! ATTTAAATTCTAACCAAAAA+TGG - chr4.2:40531767-40531786 None:intergenic 15.0%
!!! AAAGGATTTTGAAAATATTT+TGG - chr4.2:40531873-40531892 None:intergenic 15.0%
!!! TATAATTATTGCTGTTAATA+TGG + chr4.2:40531679-40531698 MS.gene30560:intron 15.0%
!! AAATTAGAAGTCTTAGAATA+TGG - chr4.2:40532359-40532378 None:intergenic 20.0%
!! ACTATATTACTGTAACTTTA+AGG + chr4.2:40532622-40532641 MS.gene30560:intron 20.0%
!!! AGAAACAAAACTAACATTTT+TGG - chr4.2:40531706-40531725 None:intergenic 20.0%
!!! ATGGTTATTGTTTTTTGATT+TGG + chr4.2:40530526-40530545 MS.gene30560:intron 20.0%
!!! ATTTGTTTAGTTCAACAATT+TGG - chr4.2:40532557-40532576 None:intergenic 20.0%
!!! TCATTCTTCTAATTTTTTGT+GGG + chr4.2:40532423-40532442 MS.gene30560:intron 20.0%
! AATTTAAATCTAGACTTCAG+TGG + chr4.2:40531778-40531797 MS.gene30560:intron 25.0%
! AGGTTTATAAAGAGATTAAG+GGG + chr4.2:40530208-40530227 MS.gene30560:CDS 25.0%
! ATTTAAATCTAGACTTCAGT+GGG + chr4.2:40531779-40531798 MS.gene30560:intron 25.0%
! CACAAAAAATTAGAAGAATG+AGG - chr4.2:40532424-40532443 None:intergenic 25.0%
! CAGAAAACAAACACATAAAT+CGG - chr4.2:40530862-40530881 None:intergenic 25.0%
! GAGGTTTATAAAGAGATTAA+GGG + chr4.2:40530207-40530226 MS.gene30560:CDS 25.0%
! GTACATCTTATTATTGTCAA+TGG + chr4.2:40533006-40533025 MS.gene30560:intron 25.0%
! TAAAATTACCTCAGTGATAT+TGG - chr4.2:40531307-40531326 None:intergenic 25.0%
! TGAGGTTTATAAAGAGATTA+AGG + chr4.2:40530206-40530225 MS.gene30560:CDS 25.0%
! TTAATCTCTTTATAAACCTC+AGG - chr4.2:40530207-40530226 None:intergenic 25.0%
! TTTACAGGCTAATATTACAA+GGG + chr4.2:40531590-40531609 MS.gene30560:CDS 25.0%
!! ATACTTTTAACATTGAAGCT+GGG + chr4.2:40530595-40530614 MS.gene30560:intron 25.0%
!! TCAGTTGAATATTCAGTTTT+TGG + chr4.2:40530395-40530414 MS.gene30560:CDS 25.0%
!! TTTTACAGGCTAATATTACA+AGG + chr4.2:40531589-40531608 MS.gene30560:CDS 25.0%
!!! AGAAGATTCATTTTTAGACA+TGG + chr4.2:40529858-40529877 MS.gene30560:CDS 25.0%
!!! ATGATTGTGATTTTTTATGG+TGG + chr4.2:40532474-40532493 MS.gene30560:intron 25.0%
!!! ATTCACTTATGGATTAGTAA+TGG + chr4.2:40531437-40531456 MS.gene30560:CDS 25.0%
!!! CACATGATTGTGATTTTTTA+TGG + chr4.2:40532471-40532490 MS.gene30560:intron 25.0%
!!! CTCATTCTTCTAATTTTTTG+TGG + chr4.2:40532422-40532441 MS.gene30560:intron 25.0%
!!! GCAGATTTTTTTTTTTCACA+TGG + chr4.2:40531933-40531952 MS.gene30560:intron 25.0%
!!! GCTTACATAAGCTATTTTTA+TGG - chr4.2:40532186-40532205 None:intergenic 25.0%
!!! GGATTTTGAAAATATTTTGG+AGG - chr4.2:40531870-40531889 None:intergenic 25.0%
!!! TAAGCTATTTTTATGGCAAA+TGG - chr4.2:40532179-40532198 None:intergenic 25.0%
!!! TGATTGTGATTTTTTATGGT+GGG + chr4.2:40532475-40532494 MS.gene30560:intron 25.0%
AAAATGGGAAAAAGACTCAA+TGG - chr4.2:40531025-40531044 None:intergenic 30.0%
AAGTCTTAGAATATGGACTT+AGG - chr4.2:40532352-40532371 None:intergenic 30.0%
AATGTTGGAAAACAAAGCAA+GGG - chr4.2:40530646-40530665 None:intergenic 30.0%
AGAAATGGTATCATGATGAA+GGG + chr4.2:40530292-40530311 MS.gene30560:CDS 30.0%
AGGTTTAGATGTATCAATGT+AGG + chr4.2:40530051-40530070 MS.gene30560:CDS 30.0%
AGTCTTAGAATATGGACTTA+GGG - chr4.2:40532351-40532370 None:intergenic 30.0%
ATATTACAAGGGATAACACA+AGG + chr4.2:40531601-40531620 MS.gene30560:CDS 30.0%
ATTATAAGATGATAGTCACC+TGG - chr4.2:40531665-40531684 None:intergenic 30.0%
ATTCTAACCAAAAATGGAAG+TGG - chr4.2:40531761-40531780 None:intergenic 30.0%
CATCAAACAGGACTAAATTT+AGG - chr4.2:40532397-40532416 None:intergenic 30.0%
GAAACTGAGTCAAAGTTAAT+TGG - chr4.2:40532790-40532809 None:intergenic 30.0%
GGACTATTACATTTGAACAT+AGG + chr4.2:40530917-40530936 MS.gene30560:CDS 30.0%
GGATATCTCCATAAAAAATG+AGG - chr4.2:40531843-40531862 None:intergenic 30.0%
GGATGATCTTGCATTTAAAA+TGG + chr4.2:40531125-40531144 MS.gene30560:intron 30.0%
GGTTTAGATGTATCAATGTA+GGG + chr4.2:40530052-40530071 MS.gene30560:CDS 30.0%
TATGAGTGAAAAGGAGAAAA+TGG + chr4.2:40530113-40530132 MS.gene30560:CDS 30.0%
TCATTTACACCATCCAAATA+CGG - chr4.2:40531162-40531181 None:intergenic 30.0%
TGAGATTAAGCTTAAAGAGT+TGG + chr4.2:40530713-40530732 MS.gene30560:CDS 30.0%
TTTAAATCTAGACTTCAGTG+GGG + chr4.2:40531780-40531799 MS.gene30560:intron 30.0%
! ACATTAGTTTCTTCTTGACT+TGG + chr4.2:40531338-40531357 MS.gene30560:intron 30.0%
! AGATAAGATGGCATTTTTAC+AGG + chr4.2:40531575-40531594 MS.gene30560:CDS 30.0%
! AGGCTATAAAATGTTTTCAC+AGG - chr4.2:40532128-40532147 None:intergenic 30.0%
! AGTTATGATGCTTTTACTCT+TGG + chr4.2:40532905-40532924 MS.gene30560:CDS 30.0%
! AGTTGTTTGCTAGTATAGAA+TGG - chr4.2:40533057-40533076 None:intergenic 30.0%
! ATCTTTTGAACTTCCTAGAT+CGG - chr4.2:40533169-40533188 None:intergenic 30.0%
! CATACTTTTAACATTGAAGC+TGG + chr4.2:40530594-40530613 MS.gene30560:intron 30.0%
! GTTATGATGCTTTTACTCTT+GGG + chr4.2:40532906-40532925 MS.gene30560:CDS 30.0%
! GTTGTTTGCTAGTATAGAAT+GGG - chr4.2:40533056-40533075 None:intergenic 30.0%
! GTTTAGTTCAACAATTTGGA+GGG - chr4.2:40532553-40532572 None:intergenic 30.0%
! TATCACTGAGGTAATTTTAC+TGG + chr4.2:40531308-40531327 MS.gene30560:intron 30.0%
! TCAATGTTAAAAGTATGACC+CGG - chr4.2:40530591-40530610 None:intergenic 30.0%
! TGTTTAGTTCAACAATTTGG+AGG - chr4.2:40532554-40532573 None:intergenic 30.0%
! TTACTGTAACTTTAAGGACA+CGG + chr4.2:40532628-40532647 MS.gene30560:intron 30.0%
! TTATGATGCTTTTACTCTTG+GGG + chr4.2:40532907-40532926 MS.gene30560:CDS 30.0%
!! AATGTTTGAGAAGGTTGATA+TGG + chr4.2:40529954-40529973 MS.gene30560:CDS 30.0%
!! AGAGTAAAAGCATCATAACT+TGG - chr4.2:40532905-40532924 None:intergenic 30.0%
!! ATTCAGTTTTTGGATAAGCT+TGG + chr4.2:40530405-40530424 MS.gene30560:CDS 30.0%
!! TGAAAATATTTTGGAGGTCA+TGG - chr4.2:40531864-40531883 None:intergenic 30.0%
!! TGTTTTCCTACATTGACTAA+GGG + chr4.2:40532039-40532058 MS.gene30560:intron 30.0%
!! TTGTTTTCCTACATTGACTA+AGG + chr4.2:40532038-40532057 MS.gene30560:intron 30.0%
!!! AGGAGAAAATGGAGTTTTTT+AGG + chr4.2:40530124-40530143 MS.gene30560:CDS 30.0%
!!! GGTTTAAGCCTCATTTTTTA+TGG + chr4.2:40531832-40531851 MS.gene30560:intron 30.0%
AATGTGCTTGTTTGTGTGTT+TGG + chr4.2:40530501-40530520 MS.gene30560:intron 35.0%
ACACAATCATTATTACCTCG+AGG - chr4.2:40532988-40533007 None:intergenic 35.0%
ACAGAAGTCTATAGGAGAAT+GGG + chr4.2:40533204-40533223 MS.gene30560:CDS 35.0%
ACCAATCATATCTGTTCCAA+TGG + chr4.2:40531483-40531502 MS.gene30560:CDS 35.0%
ACCATTGGAACAGATATGAT+TGG - chr4.2:40531487-40531506 None:intergenic 35.0%
ACGAACCAAAATCACAAGAT+TGG + chr4.2:40529716-40529735 MS.gene30560:CDS 35.0%
ATATCAGGATCCATTTCAAC+CGG - chr4.2:40530096-40530115 None:intergenic 35.0%
ATGTATCAATGTAGGGTTGA+TGG + chr4.2:40530059-40530078 MS.gene30560:CDS 35.0%
ATTAGAGTGACATGAATGTG+AGG - chr4.2:40532597-40532616 None:intergenic 35.0%
ATTCTAGTCCATTGTACCTT+AGG - chr4.2:40532449-40532468 None:intergenic 35.0%
ATTCTCCTATAGACTTCTGT+CGG - chr4.2:40533204-40533223 None:intergenic 35.0%
CAATGTTGGAAAACAAAGCA+AGG - chr4.2:40530647-40530666 None:intergenic 35.0%
CAGAAATGGTATCATGATGA+AGG + chr4.2:40530291-40530310 MS.gene30560:CDS 35.0%
CGAACCAAAATCACAAGATT+GGG + chr4.2:40529717-40529736 MS.gene30560:CDS 35.0%
CGTCAGAGTAAATTCACTTA+TGG + chr4.2:40531426-40531445 MS.gene30560:CDS 35.0%
CTAGAAAGTTTAGCTACATG+TGG + chr4.2:40529931-40529950 MS.gene30560:CDS 35.0%
CTTGTTTGTGTGTTTGGTTA+TGG + chr4.2:40530507-40530526 MS.gene30560:intron 35.0%
GAGGTACGTATACCTATTAA+AGG + chr4.2:40533111-40533130 MS.gene30560:CDS 35.0%
GAGTCAAAGTTAATTGGTGA+CGG - chr4.2:40532784-40532803 None:intergenic 35.0%
GATAACACAAGGTTTGTGAA+CGG + chr4.2:40531612-40531631 MS.gene30560:CDS 35.0%
GGAAGTTCAAAAGATGTCAA+AGG + chr4.2:40533174-40533193 MS.gene30560:CDS 35.0%
GGATTGAATAGATCTCTTAC+TGG + chr4.2:40530949-40530968 MS.gene30560:CDS 35.0%
GTCTTACCAAACAAACTAAG+CGG + chr4.2:40529769-40529788 MS.gene30560:CDS 35.0%
GTTTCTTATCTATGCAGCAT+AGG + chr4.2:40531062-40531081 MS.gene30560:intron 35.0%
TAAAGAGTTGGAGCAGAAAT+CGG + chr4.2:40530725-40530744 MS.gene30560:CDS 35.0%
TACATGTGGAATGTTTGAGA+AGG + chr4.2:40529945-40529964 MS.gene30560:CDS 35.0%
TACCTAGTGCCGTATATTTA+GGG - chr4.2:40532262-40532281 None:intergenic 35.0%
TAGGTTGTTGCAGAAGATTA+GGG + chr4.2:40530260-40530279 MS.gene30560:CDS 35.0%
TATCTCTCTATCAAAACTGC+AGG + chr4.2:40532715-40532734 MS.gene30560:intron 35.0%
TCAAAGAGAACTTCCAAAAC+AGG + chr4.2:40530464-40530483 MS.gene30560:intron 35.0%
TCTAATAAGCCAATCCAAAC+AGG - chr4.2:40532065-40532084 None:intergenic 35.0%
TGGTGAATGTTTGTTTGTGT+TGG + chr4.2:40530546-40530565 MS.gene30560:intron 35.0%
TGTAAAAGCCAATATCACTG+AGG + chr4.2:40531296-40531315 MS.gene30560:CDS 35.0%
TGTTGTCATAAGTGTAAGAG+AGG + chr4.2:40531993-40532012 MS.gene30560:intron 35.0%
TTAAATCTAGACTTCAGTGG+GGG + chr4.2:40531781-40531800 MS.gene30560:intron 35.0%
TTAGAGTGACATGAATGTGA+GGG - chr4.2:40532596-40532615 None:intergenic 35.0%
TTGTAACCCCTTACAGAATA+GGG - chr4.2:40532935-40532954 None:intergenic 35.0%
TTGTTTGTGAGGTTGTTGAA+GGG + chr4.2:40530364-40530383 MS.gene30560:CDS 35.0%
TTTAGTGAGAGCAGAATATG+CGG + chr4.2:40533263-40533282 MS.gene30560:CDS 35.0%
TTTGAACATAGGAATCTGCA+AGG + chr4.2:40530928-40530947 MS.gene30560:CDS 35.0%
TTTGACAAAACAGCTTCTTC+CGG + chr4.2:40530569-40530588 MS.gene30560:intron 35.0%
! AATGTTTTCACAGGCTATCT+TGG - chr4.2:40532119-40532138 None:intergenic 35.0%
! ACAAACATACACACCTGTTT+TGG - chr4.2:40530480-40530499 None:intergenic 35.0%
! ATTTGAAACGTCGACTAATG+TGG - chr4.2:40531972-40531991 None:intergenic 35.0%
! GAATCCCAATCTTGTGATTT+TGG - chr4.2:40529724-40529743 None:intergenic 35.0%
! GGAATCATTGTTATTGTCGT+CGG - chr4.2:40529461-40529480 None:intergenic 35.0%
! GGTGCAATATTTTTCCGTTT+TGG + chr4.2:40533306-40533325 MS.gene30560:CDS 35.0%
! TACTGTAACTTTAAGGACAC+GGG + chr4.2:40532629-40532648 MS.gene30560:intron 35.0%
! TATGATGCTTTTACTCTTGG+GGG + chr4.2:40532908-40532927 MS.gene30560:CDS 35.0%
! TGTATCAATGTAGGGTTGAT+GGG + chr4.2:40530060-40530079 MS.gene30560:CDS 35.0%
! TTCTCCTTTTCACTCATATC+AGG - chr4.2:40530111-40530130 None:intergenic 35.0%
! TTTCTGTTTGATGTTTCTGC+AGG + chr4.2:40530876-40530895 MS.gene30560:intron 35.0%
!! AAGCTTGGTAATGTTGTTGA+AGG + chr4.2:40530420-40530439 MS.gene30560:intron 35.0%
!! AATTGGTGACGGTTAAAGAA+TGG - chr4.2:40532773-40532792 None:intergenic 35.0%
!! AGCTTGGTAATGTTGTTGAA+GGG + chr4.2:40530421-40530440 MS.gene30560:intron 35.0%
!! ATTGGTGACGGTTAAAGAAT+GGG - chr4.2:40532772-40532791 None:intergenic 35.0%
!! CAGTTTTGATAGAGAGATAG+CGG - chr4.2:40532714-40532733 None:intergenic 35.0%
!! GCTTAGTTTGTTTGGTAAGA+CGG - chr4.2:40529770-40529789 None:intergenic 35.0%
!! TCTTCTTGACTTGGCTATTT+GGG + chr4.2:40531347-40531366 MS.gene30560:intron 35.0%
!! TGGTACTGGTATAGATAAGA+TGG + chr4.2:40531563-40531582 MS.gene30560:CDS 35.0%
!! TGTGCTCAGGTTGTTAATTT+TGG + chr4.2:40530321-40530340 MS.gene30560:CDS 35.0%
!! TTCTTCTTGACTTGGCTATT+TGG + chr4.2:40531346-40531365 MS.gene30560:intron 35.0%
!! TTGAATCCGCTTAGTTTGTT+TGG - chr4.2:40529778-40529797 None:intergenic 35.0%
!! TTGAGAAGGTTGATATGGAA+GGG + chr4.2:40529959-40529978 MS.gene30560:CDS 35.0%
!! TTTGAGAAGGTTGATATGGA+AGG + chr4.2:40529958-40529977 MS.gene30560:CDS 35.0%
!!! AGTTTTTTAGGAGACAAGAG+AGG + chr4.2:40530136-40530155 MS.gene30560:CDS 35.0%
!!! ATCTTGTGATTTTGGTTCGT+CGG - chr4.2:40529716-40529735 None:intergenic 35.0%
!!! GGTGAGGGTTTTTTTGAAAA+GGG - chr4.2:40529500-40529519 None:intergenic 35.0%
!!! GTTTTTTAGGAGACAAGAGA+GGG + chr4.2:40530137-40530156 MS.gene30560:CDS 35.0%
!!! TCTAATTTTTTGTGGGCCTA+AGG + chr4.2:40532430-40532449 MS.gene30560:intron 35.0%
AACAAAAGGATGCATCAAGC+AGG + chr4.2:40531809-40531828 MS.gene30560:intron 40.0%
AATGGAGGAATTAGTGCAGA+TGG + chr4.2:40531522-40531541 MS.gene30560:CDS 40.0%
ACAAAAGGATGCATCAAGCA+GGG + chr4.2:40531810-40531829 MS.gene30560:intron 40.0%
ACCTCCGGAGAAATTGAAAT+CGG - chr4.2:40529578-40529597 None:intergenic 40.0%
AGAAGAGAGGTTGCATTTGA+CGG - chr4.2:40529434-40529453 None:intergenic 40.0%
AGAGGAGGATTGATACTTCT+AGG + chr4.2:40530166-40530185 MS.gene30560:CDS 40.0%
AGGCAATACTCTTTGACCAT+TGG - chr4.2:40531502-40531521 None:intergenic 40.0%
AGTTCAACAATTTGGAGGGA+AGG - chr4.2:40532549-40532568 None:intergenic 40.0%
ATCTATACCAGTACCACTGA+GGG - chr4.2:40531559-40531578 None:intergenic 40.0%
CGAAACACCAAGACGAAAAT+CGG + chr4.2:40529832-40529851 MS.gene30560:CDS 40.0%
CTAAATATACGGCACTAGGT+AGG + chr4.2:40532261-40532280 MS.gene30560:intron 40.0%
CTACCTAGTGCCGTATATTT+AGG - chr4.2:40532263-40532282 None:intergenic 40.0%
CTAGGTTGTTGCAGAAGATT+AGG + chr4.2:40530259-40530278 MS.gene30560:CDS 40.0%
CTGACGAGAAAAATTCTGCT+CGG - chr4.2:40531412-40531431 None:intergenic 40.0%
GAAATCCGACAGAAGTCTAT+AGG + chr4.2:40533196-40533215 MS.gene30560:CDS 40.0%
GACAGAAGTCTATAGGAGAA+TGG + chr4.2:40533203-40533222 MS.gene30560:CDS 40.0%
GCAAACAGGCCCTAAATATA+CGG + chr4.2:40532250-40532269 MS.gene30560:intron 40.0%
GGAAGTTCTCTTTGAACAAC+AGG - chr4.2:40530459-40530478 None:intergenic 40.0%
GGATCCTGATATGAGTGAAA+AGG + chr4.2:40530104-40530123 MS.gene30560:CDS 40.0%
GGTAGTGCATCTTATAGACT+TGG + chr4.2:40532282-40532301 MS.gene30560:intron 40.0%
GTATACACCACCTGGTTTAA+GGG - chr4.2:40529887-40529906 None:intergenic 40.0%
GTATGTGGGAAAAAGCTGAT+AGG + chr4.2:40530031-40530050 MS.gene30560:CDS 40.0%
GTCATAAGTGTAAGAGAGGA+GGG + chr4.2:40531997-40532016 MS.gene30560:intron 40.0%
GTGCAAGCATCTACTAACTA+TGG - chr4.2:40531739-40531758 None:intergenic 40.0%
GTTGATCATAACTCAGGAAC+AGG + chr4.2:40533285-40533304 MS.gene30560:CDS 40.0%
GTTGCAGAAGATTAGGGATA+GGG + chr4.2:40530266-40530285 MS.gene30560:CDS 40.0%
GTTGTAACCCCTTACAGAAT+AGG - chr4.2:40532936-40532955 None:intergenic 40.0%
GTTGTTTGTGAGGTTGTTGA+AGG + chr4.2:40530363-40530382 MS.gene30560:CDS 40.0%
TACACGTGTGTGCCTTTAAT+AGG - chr4.2:40533126-40533145 None:intergenic 40.0%
TAGAGTGACATGAATGTGAG+GGG - chr4.2:40532595-40532614 None:intergenic 40.0%
TAGCAACTTCTTGAATCCTC+AGG + chr4.2:40530984-40531003 MS.gene30560:CDS 40.0%
TATCTATACCAGTACCACTG+AGG - chr4.2:40531560-40531579 None:intergenic 40.0%
TATGCACATCCGTATTTGGA+TGG + chr4.2:40531150-40531169 MS.gene30560:CDS 40.0%
TATGCGGTTGATCATAACTC+AGG + chr4.2:40533279-40533298 MS.gene30560:CDS 40.0%
TATTACCTCGAGGATGTTTC+TGG - chr4.2:40532978-40532997 None:intergenic 40.0%
TCAAAACTGCAGGTAGATCA+AGG + chr4.2:40532725-40532744 MS.gene30560:intron 40.0%
TCAAATGTAATAGTCCCTCC+TGG - chr4.2:40530913-40530932 None:intergenic 40.0%
TCATAAGTGTAAGAGAGGAG+GGG + chr4.2:40531998-40532017 MS.gene30560:intron 40.0%
TCTGCACTAATTCCTCCATT+AGG - chr4.2:40531522-40531541 None:intergenic 40.0%
TCTGTAAGGGGTTACAACAT+GGG + chr4.2:40532938-40532957 MS.gene30560:CDS 40.0%
TGAGATGGTTGTTAAGCGAT+TGG - chr4.2:40529359-40529378 None:intergenic 40.0%
TGTATACACCACCTGGTTTA+AGG - chr4.2:40529888-40529907 None:intergenic 40.0%
TGTCATAAGTGTAAGAGAGG+AGG + chr4.2:40531996-40532015 MS.gene30560:intron 40.0%
TGTGCTTTATGTACTGCTGT+AGG + chr4.2:40531104-40531123 MS.gene30560:intron 40.0%
TGTTGCAGAAGATTAGGGAT+AGG + chr4.2:40530265-40530284 MS.gene30560:CDS 40.0%
TGTTTGTGAGGTTGTTGAAG+GGG + chr4.2:40530365-40530384 MS.gene30560:CDS 40.0%
TTAGGGATAGGGTTCAGAAA+TGG + chr4.2:40530277-40530296 MS.gene30560:CDS 40.0%
TTCTGTAAGGGGTTACAACA+TGG + chr4.2:40532937-40532956 MS.gene30560:CDS 40.0%
TTGACAAAACAGCTTCTTCC+GGG + chr4.2:40530570-40530589 MS.gene30560:intron 40.0%
TTTCTTGTTCTTCCTACAGC+TGG + chr4.2:40533083-40533102 MS.gene30560:intron 40.0%
TTTGTGAACGGAGCTATAGT+TGG + chr4.2:40531624-40531643 MS.gene30560:CDS 40.0%
! ATCATTGTTATTGTCGTCGG+AGG - chr4.2:40529458-40529477 None:intergenic 40.0%
! GACTAATGTGGTGGAATAAC+AGG - chr4.2:40531960-40531979 None:intergenic 40.0%
! GTTTGCTAGTATAGAATGGG+AGG - chr4.2:40533053-40533072 None:intergenic 40.0%
! TTCTGTTCCGATTTTCGTCT+TGG - chr4.2:40529842-40529861 None:intergenic 40.0%
! TTCTTTCGCTGAGAGTATGT+GGG + chr4.2:40530017-40530036 MS.gene30560:CDS 40.0%
! TTTCTTTCGCTGAGAGTATG+TGG + chr4.2:40530016-40530035 MS.gene30560:CDS 40.0%
!! CAAAGAGTATTGCCTAATGG+AGG + chr4.2:40531507-40531526 MS.gene30560:CDS 40.0%
!! CAGCATAGGCATTGATGATT+TGG + chr4.2:40531076-40531095 MS.gene30560:intron 40.0%
!! GGTCAAAGAGTATTGCCTAA+TGG + chr4.2:40531504-40531523 MS.gene30560:CDS 40.0%
!! GGTGGTTGGTTTAACAACAA+CGG + chr4.2:40529637-40529656 MS.gene30560:CDS 40.0%
!! TACTTCTAGGCCTTGTCTTT+TGG + chr4.2:40530179-40530198 MS.gene30560:CDS 40.0%
!!! CGGTGAGGGTTTTTTTGAAA+AGG - chr4.2:40529501-40529520 None:intergenic 40.0%
!!! GAGGGTTTTTTTGAAAAGGG+AGG - chr4.2:40529497-40529516 None:intergenic 40.0%
!!! GGTTTTTTTGAAAAGGGAGG+AGG - chr4.2:40529494-40529513 None:intergenic 40.0%
!!! TATTGGCTTTTACACCAGCA+CGG - chr4.2:40531290-40531309 None:intergenic 40.0%
AAACTCATCCTCCTCTACCT+TGG - chr4.2:40532510-40532529 None:intergenic 45.0%
AACAGGCCCTTAGTCAATGT+AGG - chr4.2:40532048-40532067 None:intergenic 45.0%
AAGCTGGGAAACAAGCTTTG+AGG + chr4.2:40530610-40530629 MS.gene30560:intron 45.0%
AAGGGGATGTTGAGTAAGCA+AGG + chr4.2:40530225-40530244 MS.gene30560:CDS 45.0%
AGGGGATGTTGAGTAAGCAA+GGG + chr4.2:40530226-40530245 MS.gene30560:CDS 45.0%
AGTCTATAGGAGAATGGGTC+AGG + chr4.2:40533209-40533228 MS.gene30560:CDS 45.0%
ATAAGTGTAAGAGAGGAGGG+GGG + chr4.2:40532000-40532019 MS.gene30560:intron 45.0%
ATGGTATCCCTTAAACCAGG+TGG + chr4.2:40529877-40529896 MS.gene30560:CDS 45.0%
CAAAAGGATGCATCAAGCAG+GGG + chr4.2:40531811-40531830 MS.gene30560:intron 45.0%
CAGTGGGGGAAGAAAACAAA+AGG + chr4.2:40531795-40531814 MS.gene30560:intron 45.0%
CATAAGTGTAAGAGAGGAGG+GGG + chr4.2:40531999-40532018 MS.gene30560:intron 45.0%
CCAACATTGAAGTGAATCCG+CGG + chr4.2:40530658-40530677 MS.gene30560:intron 45.0%
CCTCCGGAGAAATTGAAATC+GGG - chr4.2:40529577-40529596 None:intergenic 45.0%
CGCTAATGTTCCATCAGCAT+TGG - chr4.2:40529989-40530008 None:intergenic 45.0%
CTCCCCGATTTCAATTTCTC+CGG + chr4.2:40529571-40529590 MS.gene30560:CDS 45.0%
CTCCGGAGAAATTGAAATCG+GGG - chr4.2:40529576-40529595 None:intergenic 45.0%
CTTCATACCAGCACCATAAG+AGG - chr4.2:40533238-40533257 None:intergenic 45.0%
CTTCCCTCATTCTTCTCATC+AGG - chr4.2:40530684-40530703 None:intergenic 45.0%
GAAGGGAAAACCAATGCTGA+TGG + chr4.2:40529976-40529995 MS.gene30560:CDS 45.0%
GACATGGTATCCCTTAAACC+AGG + chr4.2:40529874-40529893 MS.gene30560:CDS 45.0%
GATGGTTGTTAAGCGATTGG+AGG - chr4.2:40529356-40529375 None:intergenic 45.0%
GATGTTGAGTAAGCAAGGGA+GGG + chr4.2:40530230-40530249 MS.gene30560:CDS 45.0%
GATTTCAATTTCTCCGGAGG+TGG + chr4.2:40529577-40529596 MS.gene30560:CDS 45.0%
GCGCTAATCATGATAAGTGC+TGG + chr4.2:40532216-40532235 MS.gene30560:intron 45.0%
GCGTCCAACTTTGGTATTTG+CGG + chr4.2:40530791-40530810 MS.gene30560:intron 45.0%
GGAGAAATTGAAATCGGGGA+GGG - chr4.2:40529572-40529591 None:intergenic 45.0%
GGAGTATGCACATCCGTATT+TGG + chr4.2:40531146-40531165 MS.gene30560:CDS 45.0%
GGTAAGACGGTTATGTTAGC+TGG - chr4.2:40529757-40529776 None:intergenic 45.0%
GGTTACAACATGGGTGAGAT+TGG + chr4.2:40532947-40532966 MS.gene30560:CDS 45.0%
GTCTATAGGAGAATGGGTCA+GGG + chr4.2:40533210-40533229 MS.gene30560:CDS 45.0%
GTGTATGCCTTTGCAGAACA+TGG + chr4.2:40533141-40533160 MS.gene30560:CDS 45.0%
GTTTCTCCAGTTGAAGTCTG+TGG + chr4.2:40532805-40532824 MS.gene30560:CDS 45.0%
TCAGTCGAAACCGGTTGAAA+TGG + chr4.2:40530083-40530102 MS.gene30560:CDS 45.0%
TCTATAGGAGAATGGGTCAG+GGG + chr4.2:40533211-40533230 MS.gene30560:CDS 45.0%
TGAATACCGGACTCAGCTTT+CGG - chr4.2:40531224-40531243 None:intergenic 45.0%
TTCGCCGCAAATACCAAAGT+TGG - chr4.2:40530798-40530817 None:intergenic 45.0%
TTTAACAACAACGGAGGCGA+AGG + chr4.2:40529646-40529665 MS.gene30560:CDS 45.0%
TTTCACAGGCTATCTTGGAG+AGG - chr4.2:40532114-40532133 None:intergenic 45.0%
TTTGTGGGCCTAAGGTACAA+TGG + chr4.2:40532438-40532457 MS.gene30560:intron 45.0%
! AAGAGAGGGAGTATAAGAGG+AGG + chr4.2:40530151-40530170 MS.gene30560:CDS 45.0%
! ACATTGACTAAGGGCCTGTT+TGG + chr4.2:40532048-40532067 MS.gene30560:intron 45.0%
! GAATGAGGCGTTCATCAAAC+AGG - chr4.2:40532409-40532428 None:intergenic 45.0%
! GACAAGAGAGGGAGTATAAG+AGG + chr4.2:40530148-40530167 MS.gene30560:CDS 45.0%
! GACTAGTATCAGAGTACCTG+AGG - chr4.2:40531003-40531022 None:intergenic 45.0%
! GCTTGCACCACTTCCATTTT+TGG + chr4.2:40531751-40531770 MS.gene30560:intron 45.0%
! TGAAACGTCGACTAATGTGG+TGG - chr4.2:40531969-40531988 None:intergenic 45.0%
! TGGTGATGTAAGCTGCAAAC+AGG + chr4.2:40532236-40532255 MS.gene30560:intron 45.0%
!! GGTTGGTTTAACAACAACGG+AGG + chr4.2:40529640-40529659 MS.gene30560:CDS 45.0%
!! TATGGTGCTGGTATGAAGCT+TGG + chr4.2:40533240-40533259 MS.gene30560:CDS 45.0%
!!! AATAAATTGTTTATTTTTAT+AGG - chr4.2:40532148-40532167 None:intergenic 5.0%
AACCACCATAGTGACCATGG+AGG - chr4.2:40532868-40532887 None:intergenic 50.0%
AAGCTGAGTCCGGTATTCAC+TGG + chr4.2:40531225-40531244 MS.gene30560:CDS 50.0%
ACCTCAGGAGCCAAAAGACA+AGG - chr4.2:40530192-40530211 None:intergenic 50.0%
ACGGAGCTATAGTTGGAAGC+AGG + chr4.2:40531631-40531650 MS.gene30560:CDS 50.0%
AGAGAGGTTGCATTTGACGG+AGG - chr4.2:40529431-40529450 None:intergenic 50.0%
AGATGTGGTGGTTGTTACGG+CGG - chr4.2:40529399-40529418 None:intergenic 50.0%
AGCAGCTTACACGGAGAGTT+CGG - chr4.2:40531194-40531213 None:intergenic 50.0%
AGGTTGCATTTGACGGAGGA+AGG - chr4.2:40529427-40529446 None:intergenic 50.0%
AGTGACATGAATGTGAGGGG+AGG - chr4.2:40532592-40532611 None:intergenic 50.0%
ATTGAAATCGGGGAGGGAGT+CGG - chr4.2:40529566-40529585 None:intergenic 50.0%
CACAACCACCATAGTGACCA+TGG - chr4.2:40532871-40532890 None:intergenic 50.0%
CAGAACCAGCTTATCAGCTC+GGG - chr4.2:40532313-40532332 None:intergenic 50.0%
CAGTTGAAGTCTGTGGAGGA+AGG + chr4.2:40532812-40532831 MS.gene30560:CDS 50.0%
CCCAGGAACAATACTCCACT+CGG - chr4.2:40530763-40530782 None:intergenic 50.0%
CCCGATTTCAATTTCTCCGG+AGG + chr4.2:40529574-40529593 MS.gene30560:CDS 50.0%
CCGCGGATTCACTTCAATGT+TGG - chr4.2:40530661-40530680 None:intergenic 50.0%
CGGAGAAATTGAAATCGGGG+AGG - chr4.2:40529573-40529592 None:intergenic 50.0%
CGGCCTGATGAGAAGAATGA+GGG + chr4.2:40530678-40530697 MS.gene30560:CDS 50.0%
CTTCCTCCACAGACTTCAAC+TGG - chr4.2:40532814-40532833 None:intergenic 50.0%
CTTGTCCTCCATGGTCACTA+TGG + chr4.2:40532860-40532879 MS.gene30560:CDS 50.0%
GAAAAGGGAGGAGGAGTTAG+TGG - chr4.2:40529485-40529504 None:intergenic 50.0%
GACTAAGGGCCTGTTTGGAT+TGG + chr4.2:40532053-40532072 MS.gene30560:intron 50.0%
GCAGAACCAGCTTATCAGCT+CGG - chr4.2:40532314-40532333 None:intergenic 50.0%
GGAAATTGCTGCCAACACCA+AGG - chr4.2:40532751-40532770 None:intergenic 50.0%
GGATGTTGAGTAAGCAAGGG+AGG + chr4.2:40530229-40530248 MS.gene30560:CDS 50.0%
GGCCCTAAATATACGGCACT+AGG + chr4.2:40532257-40532276 MS.gene30560:intron 50.0%
GGCTGTTGAAGCAGCTTACA+CGG - chr4.2:40531203-40531222 None:intergenic 50.0%
GGGAGATGTGGTGGTTGTTA+CGG - chr4.2:40529402-40529421 None:intergenic 50.0%
GGTCACTATGGTGGTTGTGT+AGG + chr4.2:40532872-40532891 MS.gene30560:CDS 50.0%
TAAGCGATTGGAGGCGAAGA+AGG - chr4.2:40529347-40529366 None:intergenic 50.0%
TAAGTGTAAGAGAGGAGGGG+GGG + chr4.2:40532001-40532020 MS.gene30560:intron 50.0%
TCATTCTTCTCATCAGGCCG+CGG - chr4.2:40530678-40530697 None:intergenic 50.0%
TCTCCAGTTGAAGTCTGTGG+AGG + chr4.2:40532808-40532827 MS.gene30560:CDS 50.0%
TGAGTCCGGTATTCACTGGT+GGG + chr4.2:40531229-40531248 MS.gene30560:CDS 50.0%
TGCATTTGACGGAGGAAGGA+CGG - chr4.2:40529423-40529442 None:intergenic 50.0%
TGGAAGCAGGAACATGTTCC+AGG + chr4.2:40531644-40531663 MS.gene30560:CDS 50.0%
TGGAGGGAAGGCAACTAGAA+GGG - chr4.2:40532537-40532556 None:intergenic 50.0%
TGGGGGTCCCTATTCTGTAA+GGG + chr4.2:40532925-40532944 MS.gene30560:CDS 50.0%
TTCAATTTCTCCGGAGGTGG+CGG + chr4.2:40529580-40529599 MS.gene30560:CDS 50.0%
TTGGAGGGAAGGCAACTAGA+AGG - chr4.2:40532538-40532557 None:intergenic 50.0%
TTGGGGGTCCCTATTCTGTA+AGG + chr4.2:40532924-40532943 MS.gene30560:CDS 50.0%
! GGATGAAGTGCCCTCCATAT+GGG + chr4.2:40531260-40531279 MS.gene30560:CDS 50.0%
! GTAGATCAAGGCCTTGGTGT+TGG + chr4.2:40532737-40532756 MS.gene30560:CDS 50.0%
! GTTGATGGGTCAGTCGAAAC+CGG + chr4.2:40530074-40530093 MS.gene30560:CDS 50.0%
! TGAAGGGTATGCTTGTGCTC+AGG + chr4.2:40530308-40530327 MS.gene30560:CDS 50.0%
! TGGATGAAGTGCCCTCCATA+TGG + chr4.2:40531259-40531278 MS.gene30560:CDS 50.0%
!! ACCGAGTGGAGTATTGTTCC+TGG + chr4.2:40530759-40530778 MS.gene30560:CDS 50.0%
!! AGCTGATAAGCTGGTTCTGC+GGG + chr4.2:40532314-40532333 MS.gene30560:intron 50.0%
!! ATCGGTGCCATGTTCTGCAA+AGG - chr4.2:40533151-40533170 None:intergenic 50.0%
!! CCGAGTGGAGTATTGTTCCT+GGG + chr4.2:40530760-40530779 MS.gene30560:CDS 50.0%
!! GAGCTGATAAGCTGGTTCTG+CGG + chr4.2:40532313-40532332 MS.gene30560:intron 50.0%
!! TCGTCTTGGTGTTTCGATCG+AGG - chr4.2:40529828-40529847 None:intergenic 50.0%
!!! TTTTGGTTCGTCGGCGATTG+CGG - chr4.2:40529707-40529726 None:intergenic 50.0%
AACAACAACGGAGGCGAAGG+AGG + chr4.2:40529649-40529668 MS.gene30560:CDS 55.0%
AAGGGAGGAGGAGTTAGTGG+AGG - chr4.2:40529482-40529501 None:intergenic 55.0%
AAGTGTAAGAGAGGAGGGGG+GGG + chr4.2:40532002-40532021 MS.gene30560:intron 55.0%
ACCAGCACGGTCAACCCATA+TGG - chr4.2:40531277-40531296 None:intergenic 55.0%
AGCACGGTCAACCCATATGG+AGG - chr4.2:40531274-40531293 None:intergenic 55.0%
AGCAGCCAGAAACATCCTCG+AGG + chr4.2:40532970-40532989 MS.gene30560:CDS 55.0%
AGTATTGTTCCTGGGCGAGG+AGG + chr4.2:40530768-40530787 MS.gene30560:CDS 55.0%
ATGGGTCAGGGGTCCTCTTA+TGG + chr4.2:40533222-40533241 MS.gene30560:CDS 55.0%
CAACAGCCGAAAGCTGAGTC+CGG + chr4.2:40531215-40531234 MS.gene30560:CDS 55.0%
CCAACAACCCTCAGTGGTAC+TGG + chr4.2:40531549-40531568 MS.gene30560:CDS 55.0%
CCAGTACCACTGAGGGTTGT+TGG - chr4.2:40531552-40531571 None:intergenic 55.0%
CTGAGTCCGGTATTCACTGG+TGG + chr4.2:40531228-40531247 MS.gene30560:CDS 55.0%
CTGCAGGTAGATCAAGGCCT+TGG + chr4.2:40532731-40532750 MS.gene30560:intron 55.0%
GAGGCGAAGGAGGTGATTTC+TGG + chr4.2:40529659-40529678 MS.gene30560:CDS 55.0%
GCACGGTCAACCCATATGGA+GGG - chr4.2:40531273-40531292 None:intergenic 55.0%
GCATTTGACGGAGGAAGGAC+GGG - chr4.2:40529422-40529441 None:intergenic 55.0%
GCGGCCTGATGAGAAGAATG+AGG + chr4.2:40530677-40530696 MS.gene30560:CDS 55.0%
GGGGGTCCCTATTCTGTAAG+GGG + chr4.2:40532926-40532945 MS.gene30560:CDS 55.0%
GGTGTTTGCAGCCAAGGTAG+AGG + chr4.2:40532496-40532515 MS.gene30560:intron 55.0%
GTACCACTGAGGGTTGTTGG+AGG - chr4.2:40531549-40531568 None:intergenic 55.0%
GTATTGTTCCTGGGCGAGGA+GGG + chr4.2:40530769-40530788 MS.gene30560:CDS 55.0%
GTCCTCCATGGTCACTATGG+TGG + chr4.2:40532863-40532882 MS.gene30560:CDS 55.0%
GTTTGCAGCCAAGGTAGAGG+AGG + chr4.2:40532499-40532518 MS.gene30560:intron 55.0%
TACGCGCGAGGTTGTTTGTG+AGG + chr4.2:40530353-40530372 MS.gene30560:CDS 55.0%
TCAGTCCCGAGCTGATAAGC+TGG + chr4.2:40532305-40532324 MS.gene30560:intron 55.0%
TGACCATGGAGGACAAGCAC+TGG - chr4.2:40532857-40532876 None:intergenic 55.0%
TGGCAATCTGAATACGCGCG+AGG + chr4.2:40530341-40530360 MS.gene30560:CDS 55.0%
TGTCGTCGGAGGAAGAAGAG+AGG - chr4.2:40529447-40529466 None:intergenic 55.0%
! AAGTCTGTGGAGGAAGGTGC+TGG + chr4.2:40532818-40532837 MS.gene30560:CDS 55.0%
! AGCAAGGGAGGGTTAGTGCT+AGG + chr4.2:40530241-40530260 MS.gene30560:CDS 55.0%
! CGGCTGAAGTTAGTACCGAG+TGG + chr4.2:40530745-40530764 MS.gene30560:CDS 55.0%
! TCCATATGGGTTGACCGTGC+TGG + chr4.2:40531273-40531292 MS.gene30560:CDS 55.0%
!! ATGGTGGGTGTTTGCAGCCA+AGG + chr4.2:40532490-40532509 MS.gene30560:intron 55.0%
!! GCAGAACATGGCACCGATCT+AGG + chr4.2:40533153-40533172 MS.gene30560:CDS 55.0%
!! GCTGATAAGCTGGTTCTGCG+GGG + chr4.2:40532315-40532334 MS.gene30560:intron 55.0%
!! TGGAGTATTGTTCCTGGGCG+AGG + chr4.2:40530765-40530784 MS.gene30560:CDS 55.0%
!!! GCCTTGTCTTTTGGCTCCTG+AGG + chr4.2:40530188-40530207 MS.gene30560:CDS 55.0%
ACACGGAGAGTTCGGTTGCG+TGG - chr4.2:40531186-40531205 None:intergenic 60.0%
AGGAAGGACGGGAGATGTGG+TGG - chr4.2:40529411-40529430 None:intergenic 60.0%
AGGAGGAGGAGGGGTTGAGA+TGG - chr4.2:40529374-40529393 None:intergenic 60.0%
AGGCTTCGCTTCAGCCAGGA+GGG + chr4.2:40530896-40530915 MS.gene30560:intron 60.0%
AGTGTAAGAGAGGAGGGGGG+GGG + chr4.2:40532003-40532022 MS.gene30560:intron 60.0%
CACACGCGCTCAGCTTCAGA+AGG + chr4.2:40529906-40529925 MS.gene30560:CDS 60.0%
CAGGGGTCCTCTTATGGTGC+TGG + chr4.2:40533228-40533247 MS.gene30560:CDS 60.0%
CCACCAGTGCTTGTCCTCCA+TGG + chr4.2:40532851-40532870 MS.gene30560:CDS 60.0%
CTTCCTACAGCTGGCAGCTG+AGG + chr4.2:40533092-40533111 MS.gene30560:intron 60.0%
GCGCGTGTGTATACACCACC+TGG - chr4.2:40529895-40529914 None:intergenic 60.0%
GGACCTCCAACAACCCTCAG+TGG + chr4.2:40531543-40531562 MS.gene30560:CDS 60.0%
GGAGGAGATAGCAACGGTGG+CGG - chr4.2:40529521-40529540 None:intergenic 60.0%
GGAGGTGGAGGATCTTCCTC+CGG + chr4.2:40529604-40529623 MS.gene30560:CDS 60.0%
GGTGAGGAAGAGAGCAGAGG+CGG - chr4.2:40529545-40529564 None:intergenic 60.0%
GTACCTCAGCTGCCAGCTGT+AGG - chr4.2:40533098-40533117 None:intergenic 60.0%
GTCGGTGAGGAAGAGAGCAG+AGG - chr4.2:40529548-40529567 None:intergenic 60.0%
TCGTCGGCGATTGCGGTTGA+CGG - chr4.2:40529700-40529719 None:intergenic 60.0%
TGGTGGTTGTTACGGCGGTG+AGG - chr4.2:40529394-40529413 None:intergenic 60.0%
TGGTTGTTACGGCGGTGAGG+AGG - chr4.2:40529391-40529410 None:intergenic 60.0%
TTGTTACGGCGGTGAGGAGG+AGG - chr4.2:40529388-40529407 None:intergenic 60.0%
! AATTTCTCCGGAGGTGGCGG+CGG + chr4.2:40529583-40529602 MS.gene30560:CDS 60.0%
! AGATAGCAACGGTGGCGGTG+AGG - chr4.2:40529516-40529535 None:intergenic 60.0%
! GATAGCAACGGTGGCGGTGA+GGG - chr4.2:40529515-40529534 None:intergenic 60.0%
! TCCGGTATTCACTGGTGGGC+CGG + chr4.2:40531233-40531252 MS.gene30560:CDS 60.0%
!! AGGACAAGCACTGGTGGTGG+TGG - chr4.2:40532848-40532867 None:intergenic 60.0%
!! CCATGGAGGACAAGCACTGG+TGG - chr4.2:40532854-40532873 None:intergenic 60.0%
!! TGGAGGACAAGCACTGGTGG+TGG - chr4.2:40532851-40532870 None:intergenic 60.0%
AATCGGGGAGGGAGTCGGTG+AGG - chr4.2:40529561-40529580 None:intergenic 65.0%
CAGGCTTCGCTTCAGCCAGG+AGG + chr4.2:40530895-40530914 MS.gene30560:intron 65.0%
CCAACCACCACCTCCACCAC+CGG - chr4.2:40529626-40529645 None:intergenic 65.0%
CCCGGCCCACCAGTGAATAC+CGG - chr4.2:40531237-40531256 None:intergenic 65.0%
CGGAGGAAGGACGGGAGATG+TGG - chr4.2:40529414-40529433 None:intergenic 65.0%
CTGCAGGCTTCGCTTCAGCC+AGG + chr4.2:40530892-40530911 MS.gene30560:intron 65.0%
GAGGAAGAGAGCAGAGGCGG+CGG - chr4.2:40529542-40529561 None:intergenic 65.0%
GGAGGATCTTCCTCCGGTGG+TGG + chr4.2:40529610-40529629 MS.gene30560:CDS 65.0%
GGCGGAGGAGATAGCAACGG+TGG - chr4.2:40529524-40529543 None:intergenic 65.0%
GGCGGCGGAGGAGATAGCAA+CGG - chr4.2:40529527-40529546 None:intergenic 65.0%
GGTGGAGGATCTTCCTCCGG+TGG + chr4.2:40529607-40529626 MS.gene30560:CDS 65.0%
TAAGAGAGGAGGGGGGGGGA+GGG + chr4.2:40532007-40532026 MS.gene30560:intron 65.0%
TACGGCGGTGAGGAGGAGGA+GGG - chr4.2:40529384-40529403 None:intergenic 65.0%
TTACGGCGGTGAGGAGGAGG+AGG - chr4.2:40529385-40529404 None:intergenic 65.0%
! CCGGTATTCACTGGTGGGCC+GGG + chr4.2:40531234-40531253 MS.gene30560:CDS 65.0%
! CGGTATTCACTGGTGGGCCG+GGG + chr4.2:40531235-40531254 MS.gene30560:CDS 65.0%
! GGATCTTCCTCCGGTGGTGG+AGG + chr4.2:40529613-40529632 MS.gene30560:CDS 65.0%
! GGTATTCACTGGTGGGCCGG+GGG + chr4.2:40531236-40531255 MS.gene30560:CDS 65.0%
!! GAGGGCACTTCATCCACCCC+CGG - chr4.2:40531255-40531274 None:intergenic 65.0%
!! GCGAGGAGGGCGTCCAACTT+TGG + chr4.2:40530782-40530801 MS.gene30560:CDS 65.0%
!! TCTTCCTCCGGTGGTGGAGG+TGG + chr4.2:40529616-40529635 MS.gene30560:CDS 65.0%
AAGAGAGGAGGGGGGGGGAG+GGG + chr4.2:40532008-40532027 MS.gene30560:intron 70.0%
ACCACCACCTCCACCACCGG+AGG - chr4.2:40529623-40529642 None:intergenic 70.0%
ACGGCGGTGAGGAGGAGGAG+GGG - chr4.2:40529383-40529402 None:intergenic 70.0%
GAAGAGAGCAGAGGCGGCGG+AGG - chr4.2:40529539-40529558 None:intergenic 70.0%
GTAAGAGAGGAGGGGGGGGG+AGG + chr4.2:40532006-40532025 MS.gene30560:intron 70.0%
! ATTCACTGGTGGGCCGGGGG+TGG + chr4.2:40531239-40531258 MS.gene30560:CDS 70.0%
!! CCGGTGGTGGAGGTGGTGGT+TGG + chr4.2:40529623-40529642 MS.gene30560:CDS 70.0%
!! TCCTCCGGTGGTGGAGGTGG+TGG + chr4.2:40529619-40529638 MS.gene30560:CDS 70.0%
AGAGAGGAGGGGGGGGGAGG+GGG + chr4.2:40532009-40532028 MS.gene30560:intron 75.0%
GTTGGACGCCCTCCTCGCCC+AGG - chr4.2:40530780-40530799 None:intergenic 75.0%
TCCACCTCCGCCGCCACCTC+CGG - chr4.2:40529593-40529612 None:intergenic 75.0%
! TTCTCCGGAGGTGGCGGCGG+AGG + chr4.2:40529586-40529605 MS.gene30560:CDS 75.0%
! AGAGGAGGGGGGGGGAGGGG+GGG + chr4.2:40532011-40532030 MS.gene30560:intron 80.0%
! GAGAGGAGGGGGGGGGAGGG+GGG + chr4.2:40532010-40532029 MS.gene30560:intron 80.0%
!! GGAGGTGGCGGCGGAGGTGG+AGG + chr4.2:40529592-40529611 MS.gene30560:CDS 80.0%
!! TCCGGAGGTGGCGGCGGAGG+TGG + chr4.2:40529589-40529608 MS.gene30560:CDS 80.0%
! AGGAGGGGGGGGGAGGGGGG+GGG + chr4.2:40532013-40532032 MS.gene30560:intron 85.0%
! GAGGAGGGGGGGGGAGGGGG+GGG + chr4.2:40532012-40532031 MS.gene30560:intron 85.0%
! GAGGGGGGGGGAGGGGGGGG+GGG + chr4.2:40532015-40532034 MS.gene30560:intron 90.0%
! GGAGGGGGGGGGAGGGGGGG+GGG + chr4.2:40532014-40532033 MS.gene30560:intron 90.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 40529328 40533341 40529328 ID=MS.gene30560
chr4.2 mRNA 40529328 40533341 40529328 ID=MS.gene30560.t1;Parent=MS.gene30560
chr4.2 exon 40529328 40530426 40529328 ID=MS.gene30560.t1.exon1;Parent=MS.gene30560.t1
chr4.2 CDS 40529328 40530426 40529328 ID=cds.MS.gene30560.t1;Parent=MS.gene30560.t1
chr4.2 exon 40530670 40530803 40530670 ID=MS.gene30560.t1.exon2;Parent=MS.gene30560.t1
chr4.2 CDS 40530670 40530803 40530670 ID=cds.MS.gene30560.t1;Parent=MS.gene30560.t1
chr4.2 exon 40530898 40531005 40530898 ID=MS.gene30560.t1.exon3;Parent=MS.gene30560.t1
chr4.2 CDS 40530898 40531005 40530898 ID=cds.MS.gene30560.t1;Parent=MS.gene30560.t1
chr4.2 exon 40531126 40531317 40531126 ID=MS.gene30560.t1.exon4;Parent=MS.gene30560.t1
chr4.2 CDS 40531126 40531317 40531126 ID=cds.MS.gene30560.t1;Parent=MS.gene30560.t1
chr4.2 exon 40531417 40531665 40531417 ID=MS.gene30560.t1.exon5;Parent=MS.gene30560.t1
chr4.2 CDS 40531417 40531665 40531417 ID=cds.MS.gene30560.t1;Parent=MS.gene30560.t1
chr4.2 exon 40532737 40532991 40532737 ID=MS.gene30560.t1.exon6;Parent=MS.gene30560.t1
chr4.2 CDS 40532737 40532991 40532737 ID=cds.MS.gene30560.t1;Parent=MS.gene30560.t1
chr4.2 exon 40533102 40533341 40533102 ID=MS.gene30560.t1.exon7;Parent=MS.gene30560.t1
chr4.2 CDS 40533102 40533341 40533102 ID=cds.MS.gene30560.t1;Parent=MS.gene30560.t1
Gene Sequence

>MS.gene30560

ATGTCTTCTTCTTCTTCCTTCTTCGCCTCCAATCGCTTAACAACCATCTCAACCCCTCCTCCTCCTCACCGCCGTAACAACCACCACATCTCCCGTCCTTCCTCCGTCAAATGCAACCTCTCTTCTTCCTCCGACGACAATAACAATGATTCCTCCACTAACTCCTCCTCCCTTTTCAAAAAAACCCTCACCGCCACCGTTGCTATCTCCTCCGCCGCCTCTGCTCTCTTCCTCACCGACTCCCTCCCCGATTTCAATTTCTCCGGAGGTGGCGGCGGAGGTGGAGGATCTTCCTCCGGTGGTGGAGGTGGTGGTTGGTTTAACAACAACGGAGGCGAAGGAGGTGATTTCTGGTCAAGAATTCTCTCACCGTCAACCGCAATCGCCGACGAACCAAAATCACAAGATTGGGATTCACACGAGCTTCCAGCTAACATAACCGTCTTACCAAACAAACTAAGCGGATTCAAGAAATACAAAATCTCAGATATAATTTTCCTCGATCGAAACACCAAGACGAAAATCGGAACAGAAGATTCATTTTTAGACATGGTATCCCTTAAACCAGGTGGTGTATACACACGCGCTCAGCTTCAGAAGGAGCTAGAAAGTTTAGCTACATGTGGAATGTTTGAGAAGGTTGATATGGAAGGGAAAACCAATGCTGATGGAACATTAGCGTTGACGATTTCTTTCGCTGAGAGTATGTGGGAAAAAGCTGATAGGTTTAGATGTATCAATGTAGGGTTGATGGGTCAGTCGAAACCGGTTGAAATGGATCCTGATATGAGTGAAAAGGAGAAAATGGAGTTTTTTAGGAGACAAGAGAGGGAGTATAAGAGGAGGATTGATACTTCTAGGCCTTGTCTTTTGGCTCCTGAGGTTTATAAAGAGATTAAGGGGATGTTGAGTAAGCAAGGGAGGGTTAGTGCTAGGTTGTTGCAGAAGATTAGGGATAGGGTTCAGAAATGGTATCATGATGAAGGGTATGCTTGTGCTCAGGTTGTTAATTTTGGCAATCTGAATACGCGCGAGGTTGTTTGTGAGGTTGTTGAAGGGGATATTACTCAGTTGAATATTCAGTTTTTGGATAAGCTTGGTAATGTTGTTGAAGGGAATACTGAAAATCCTGTTGTTCAAAGAGAACTTCCAAAACAGGTGTGTATGTTTGTTAATGTGCTTGTTTGTGTGTTTGGTTATGGTTATTGTTTTTTGATTTGGTGAATGTTTGTTTGTGTTGGTTTGACAAAACAGCTTCTTCCGGGTCATACTTTTAACATTGAAGCTGGGAAACAAGCTTTGAGGAACATAAACTCCCTTGCTTTGTTTTCCAACATTGAAGTGAATCCGCGGCCTGATGAGAAGAATGAGGGAAGCATAATTGTTGAGATTAAGCTTAAAGAGTTGGAGCAGAAATCGGCTGAAGTTAGTACCGAGTGGAGTATTGTTCCTGGGCGAGGAGGGCGTCCAACTTTGGTATTTGCGGCGAATTGAATATTTTTTTGTTTGTTGAATGCTGATATTTAACTGTCCGATTTATGTGTTTGTTTTCTGTTTGATGTTTCTGCAGGCTTCGCTTCAGCCAGGAGGGACTATTACATTTGAACATAGGAATCTGCAAGGATTGAATAGATCTCTTACTGGTTCAGTGACAACTAGCAACTTCTTGAATCCTCAGGTACTCTGATACTAGTCCATTGAGTCTTTTTCCCATTTTATTATACTTGTTCTTTAGTTTCTTATCTATGCAGCATAGGCATTGATGATTTGGTTAACTGTGCTTTATGTACTGCTGTAGGATGATCTTGCATTTAAAATGGAGTATGCACATCCGTATTTGGATGGTGTAAATGATCCACGCAACCGAACTCTCCGTGTAAGCTGCTTCAACAGCCGAAAGCTGAGTCCGGTATTCACTGGTGGGCCGGGGGTGGATGAAGTGCCCTCCATATGGGTTGACCGTGCTGGTGTAAAAGCCAATATCACTGAGGTAATTTTACTGGTTATTTTACATTAGTTTCTTCTTGACTTGGCTATTTGGGCTGTTCGTAGCTTTCTTTTTAACTTGCAATTCTTGTTTTCCGAGCAGAATTTTTCTCGTCAGAGTAAATTCACTTATGGATTAGTAATGGAAGAGATAATAACACGTGATGAAACCAATCATATCTGTTCCAATGGTCAAAGAGTATTGCCTAATGGAGGAATTAGTGCAGATGGACCTCCAACAACCCTCAGTGGTACTGGTATAGATAAGATGGCATTTTTACAGGCTAATATTACAAGGGATAACACAAGGTTTGTGAACGGAGCTATAGTTGGAAGCAGGAACATGTTCCAGGTGACTATCATCTTATAATTATTGCTGTTAATATGGTCCAAAAATGTTAGTTTTGTTTCTAATAAGAGAACCATAGTTAGTAGATGCTTGCACCACTTCCATTTTTGGTTAGAATTTAAATCTAGACTTCAGTGGGGGAAGAAAACAAAAGGATGCATCAAGCAGGGGTTTAAGCCTCATTTTTTATGGAGATATCCATGACCTCCAAAATATTTTCAAAATCCTTTCGATAATATCTATTTTATATTGTTAAAATAAATCAGAGCTGCAGATTTTTTTTTTTCACATGGTCCTGTTATTCCACCACATTAGTCGACGTTTCAAATGTGTTGTCATAAGTGTAAGAGAGGAGGGGGGGGGAGGGGGGGGGGGTTGTTTTCCTACATTGACTAAGGGCCTGTTTGGATTGGCTTATTAGAGTTTATCTAGTAACTTATTTTCATAACCTCTCCAAGATAGCCTGTGAAAACATTTTATAGCCTATAAAAATAAACAATTTATTTTATTTTACCATTTGCCATAAAAATAGCTTATGTAAGCTCATACATAAGCGCTAATCATGATAAGTGCTGGTGATGTAAGCTGCAAACAGGCCCTAAATATACGGCACTAGGTAGGTAGTGCATCTTATAGACTTGGTCAGTCCCGAGCTGATAAGCTGGTTCTGCGGGGACGAGTTAAGCCCTAAGTCCATATTCTAAGACTTCTAATTTAAATATTTTTTTTAACCTAAATTTAGTCCTGTTTGATGAACGCCTCATTCTTCTAATTTTTTGTGGGCCTAAGGTACAATGGACTAGAATTTCACATGATTGTGATTTTTTATGGTGGGTGTTTGCAGCCAAGGTAGAGGAGGATGAGTTTTGCTCCCTTCTAGTTGCCTTCCCTCCAAATTGTTGAACTAAACAAATTCATTAAAAGTACCTCCCCTCACATTCATGTCACTCTAATCATACACTATATTACTGTAACTTTAAGGACACGGGAGATTGAAATTTATAAATTTGCGATCTTGATTTTCGCTATGCTATGTTCTGTGCTGACACCGCTATCTCTCTATCAAAACTGCAGGTAGATCAAGGCCTTGGTGTTGGCAGCAATTTCCCATTCTTTAACCGTCACCAATTAACTTTGACTCAGTTTCTCCAGTTGAAGTCTGTGGAGGAAGGTGCTGGTAAACCACCACCACCAGTGCTTGTCCTCCATGGTCACTATGGTGGTTGTGTAGGTGATCTTCCAAGTTATGATGCTTTTACTCTTGGGGGTCCCTATTCTGTAAGGGGTTACAACATGGGTGAGATTGGAGCAGCCAGAAACATCCTCGAGGTAATAATGATTGTGTACATCTTATTATTGTCAATGGAGATAGAATAGCAGTTTTAATCCTCCCATTCTATACTAGCAAACAACTATCTAATTTCTTGTTCTTCCTACAGCTGGCAGCTGAGGTACGTATACCTATTAAAGGCACACACGTGTATGCCTTTGCAGAACATGGCACCGATCTAGGAAGTTCAAAAGATGTCAAAGGAAATCCGACAGAAGTCTATAGGAGAATGGGTCAGGGGTCCTCTTATGGTGCTGGTATGAAGCTTGGTTTAGTGAGAGCAGAATATGCGGTTGATCATAACTCAGGAACAGGTGCAATATTTTTCCGTTTTGGAGAAAGATTTTGA
Protein sequence

>MS.gene30560.t1

MSSSSSFFASNRLTTISTPPPPHRRNNHHISRPSSVKCNLSSSSDDNNNDSSTNSSSLFKKTLTATVAISSAASALFLTDSLPDFNFSGGGGGGGGSSSGGGGGGWFNNNGGEGGDFWSRILSPSTAIADEPKSQDWDSHELPANITVLPNKLSGFKKYKISDIIFLDRNTKTKIGTEDSFLDMVSLKPGGVYTRAQLQKELESLATCGMFEKVDMEGKTNADGTLALTISFAESMWEKADRFRCINVGLMGQSKPVEMDPDMSEKEKMEFFRRQEREYKRRIDTSRPCLLAPEVYKEIKGMLSKQGRVSARLLQKIRDRVQKWYHDEGYACAQVVNFGNLNTREVVCEVVEGDITQLNIQFLDKLVNPRPDEKNEGSIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASLQPGGTITFEHRNLQGLNRSLTGSVTTSNFLNPQDDLAFKMEYAHPYLDGVNDPRNRTLRVSCFNSRKLSPVFTGGPGVDEVPSIWVDRAGVKANITENFSRQSKFTYGLVMEEIITRDETNHICSNGQRVLPNGGISADGPPTTLSGTGIDKMAFLQANITRDNTRFVNGAIVGSRNMFQVDQGLGVGSNFPFFNRHQLTLTQFLQLKSVEEGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEVRIPIKGTHVYAFAEHGTDLGSSKDVKGNPTEVYRRMGQGSSYGAGMKLGLVRAEYAVDHNSGTGAIFFRFGERF