AlfalfaGEDB | MS.gene055441

M. sativa cultivar XinJiangDaYe / MS.gene055441

KEGG: K03013
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0110165 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF03871.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	XP_003610652.2	92.5	160	3	1	1	151	1	160	1.50E-73	285.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	O81098	64.8	159	47	1	2	151	1	159	5.3e-51	201.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	G7K102	92.5	160	3	1	1	151	1	160	1.1e-73	285.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049756	MS.gene055441	0.811504	6.77E-51	-1.69E-46
MS.gene04984	MS.gene055441	0.830352	3.08E-55	-1.69E-46
MS.gene050085	MS.gene055441	0.806409	8.34E-50	-1.69E-46
MS.gene050277	MS.gene055441	0.824484	7.87E-54	-1.69E-46
MS.gene050317	MS.gene055441	0.800671	1.29E-48	-1.69E-46
MS.gene051245	MS.gene055441	0.809148	2.18E-50	-1.69E-46
MS.gene051535	MS.gene055441	0.80213	6.49E-49	-1.69E-46
MS.gene052286	MS.gene055441	0.818838	1.59E-52	-1.69E-46
MS.gene052302	MS.gene055441	0.814919	1.21E-51	-1.69E-46
MS.gene052376	MS.gene055441	0.817947	2.53E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	MTR_5g005470	92.500	160	3	1	1	151	1	160	3.09e-105	299
MS.gene055441.t1	MTR_5g016200	73.125	160	31	2	1	151	1	157	3.55e-78	230
MS.gene055441.t1	MTR_5g016220	71.698	159	36	1	2	151	127	285	1.37e-77	233
MS.gene055441.t1	MTR_5g016220	74.803	127	31	1	1	127	1	126	1.44e-62	195
MS.gene055441.t1	MTR_6g088010	51.852	162	67	2	1	151	1	162	7.20e-50	159
MS.gene055441.t1	MTR_6g042230	51.250	160	68	2	1	151	1	159	4.86e-48	154
MS.gene055441.t1	MTR_6g088020	52.761	163	64	3	1	151	1	162	1.76e-47	153
MS.gene055441.t1	MTR_7g090220	31.788	151	91	3	10	150	53	201	3.66e-17	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	AT3G22320	64.780	159	47	1	2	151	1	159	1.62e-71	214
MS.gene055441.t1	AT5G57980	36.250	160	89	4	5	151	5	164	2.13e-28	104
MS.gene055441.t1	AT3G57080	32.704	159	95	4	3	151	20	176	1.21e-18	79.3
MS.gene055441.t1	AT2G41340	33.544	158	93	4	4	151	17	172	6.01e-17	73.9
MS.gene055441.t1	AT2G41340	33.544	158	93	4	4	151	17	172	7.63e-17	73.9
MS.gene055441.t1	AT2G41340	33.544	158	93	4	4	151	17	172	1.44e-16	73.6
MS.gene055441.t1	AT3G54490	28.387	155	99	3	7	151	35	187	7.25e-11	58.5

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Find 18 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACCGAAACTACCTCGT+CGG	0.681273	5.1:-13374334	MS.gene055441:CDS
AAAGAGCATGTGCCTTGTGC+CGG	0.514977	5.1:-13373787	MS.gene055441:intron
AAGACATAGATCTGATCAGA+AGG	0.597739	5.1:+13374211	None:intergenic
AATAGCTCTATAAACATTCT+CGG	0.403161	5.1:+13374126	None:intergenic
AATCACCGACGAGGTAGTTT+CGG	0.453235	5.1:+13374329	None:intergenic
AATTGCTTCCAAATTTCATT+TGG	0.361732	5.1:-13374053	MS.gene055441:CDS
AATTTCAGAAACACAAGTTT+TGG	0.351766	5.1:+13374072	None:intergenic
ACACCGACTTTGGCTTCTTC+AGG	0.396133	5.1:+13374184	None:intergenic
ATTCTCGGAATTCATCCTGT+TGG	0.579040	5.1:+13374141	None:intergenic
CAATGAAGACTTACACCAAC+AGG	0.446390	5.1:-13374156	MS.gene055441:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACGATTTCAAAGACAAATA+CGG	-	chr5.1:13373848-13373867	MS.gene055441:intron	30.0%
AAGACATAGATCTGATCAGA+AGG	+	chr5.1:13373926-13373945	None:intergenic	35.0%
GCGGTTTATAAGAGTTAGTT+AGG	-	chr5.1:13374155-13374174	MS.gene055441:CDS	35.0%
ATTCTCGGAATTCATCCTGT+TGG	+	chr5.1:13373996-13374015	None:intergenic	40.0%
CAATGAAGACTTACACCAAC+AGG	-	chr5.1:13373978-13373997	MS.gene055441:intron	40.0%
TCGTTGAGAATCTGATGTTC+CGG	+	chr5.1:13374369-13374388	None:intergenic	40.0%
TGCTTCAGTATAACTGTTGC+TGG	-	chr5.1:13374281-13374300	MS.gene055441:CDS	40.0%
TTTCCTGAAGAAGCCAAAGT+CGG	-	chr5.1:13373947-13373966	MS.gene055441:intron	40.0%
AAAGACCGAAACTACCTCGT+CGG	-	chr5.1:13373800-13373819	MS.gene055441:intron	45.0%
AATCACCGACGAGGTAGTTT+CGG	+	chr5.1:13373808-13373827	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	13373734	13374422	13373734	ID=MS.gene055441
chr5.1	mRNA	13373734	13374422	13373734	ID=MS.gene055441.t1;Parent=MS.gene055441
chr5.1	exon	13374042	13374422	13374042	ID=MS.gene055441.t1.exon1;Parent=MS.gene055441.t1
chr5.1	CDS	13374042	13374422	13374042	ID=cds.MS.gene055441.t1;Parent=MS.gene055441.t1
chr5.1	exon	13373734	13373805	13373734	ID=MS.gene055441.t1.exon2;Parent=MS.gene055441.t1
chr5.1	CDS	13373734	13373805	13373734	ID=cds.MS.gene055441.t1;Parent=MS.gene055441.t1

Gene Sequence

>MS.gene055441

ATGGTGTTTTCAGAGGAAGAAATAACGCGACTATACAGAATCCGCAAAACAGTGATGCAAATGCTGAAAGACCGAAACTACCTCGTCGGTGATTTCGAACTCAACATGTCCAAACACGATTTCAAAGACAAATACGGCGAGAATATGAAGAGAGAAGATCTTGTTATTAACAAAACCAAAAAAGATAAACCTTCTGATCAGATCTATGTCTTCTTTCCTGAAGAAGCCAAAGTCGGTGTGAAAACAATGAAGACTTACACCAACAGGATGAATTCCGAGAATGTTTATAGAGCTATTCTTGTTTGTCAGACCAGTCTTACTCCCTTTGCCAAAACTTGTGTTTCTGAAATTGCTTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCTTTTGTTTGTTTTATAAACCCTAATTTGTTTATGCGGTTTATAAGAGTTAGTTAGGTTATTTATACCTGACATATTGGTCAACACCGATGATAATTTGAGAAAATGAATTAATTGAATGTAATTATGTGTCCTTCTAGTCCGAGAGGTGTCTGTGCTTGTGCTTCAGTATAACTGTTGCTGGTGTGTGTGTGTGTGTGCAGGAGGCGGAGTTGCTGGTTAATATAAAAGAGCATGTGCCTTGTGCCGGAACATCAGATTCTCAACGACACCGAGAAGAAAACCTTACTTGAGAGATACACT

Protein sequence

>MS.gene055441.t1

MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEVFQSMCLVPEHQILNDTEKKTLLERYT