AlfalfaGEDB | MS.gene055441

M. sativa cultivar XinJiangDaYe / MS.gene055441

KEGG: K03013
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0110165 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF03871.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	XP_003610652.2	92.5	160	3	1	1	151	1	160	1.50E-73	285.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	O81098	64.8	159	47	1	2	151	1	159	5.3e-51	201.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	G7K102	92.5	160	3	1	1	151	1	160	1.1e-73	285.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049756	MS.gene055441	0.811504	6.77E-51	-1.69E-46
MS.gene04984	MS.gene055441	0.830352	3.08E-55	-1.69E-46
MS.gene050085	MS.gene055441	0.806409	8.34E-50	-1.69E-46
MS.gene050277	MS.gene055441	0.824484	7.87E-54	-1.69E-46
MS.gene050317	MS.gene055441	0.800671	1.29E-48	-1.69E-46
MS.gene051245	MS.gene055441	0.809148	2.18E-50	-1.69E-46
MS.gene051535	MS.gene055441	0.80213	6.49E-49	-1.69E-46
MS.gene052286	MS.gene055441	0.818838	1.59E-52	-1.69E-46
MS.gene052302	MS.gene055441	0.814919	1.21E-51	-1.69E-46
MS.gene052376	MS.gene055441	0.817947	2.53E-52	-1.69E-46
MS.gene052856	MS.gene055441	0.800285	1.55E-48	-1.69E-46
MS.gene053109	MS.gene055441	0.808223	3.44E-50	-1.69E-46
MS.gene053216	MS.gene055441	0.825938	3.57E-54	-1.69E-46
MS.gene054379	MS.gene055441	0.801987	6.95E-49	-1.69E-46
MS.gene055174	MS.gene055441	0.803107	4.08E-49	-1.69E-46
MS.gene055441	MS.gene056631	0.806477	8.07E-50	-1.69E-46
MS.gene055441	MS.gene056760	0.816111	6.54E-52	-1.69E-46
MS.gene055441	MS.gene056849	0.809803	1.58E-50	-1.69E-46
MS.gene055441	MS.gene057057	0.816382	5.69E-52	-1.69E-46
MS.gene055441	MS.gene057094	0.811457	6.94E-51	-1.69E-46
MS.gene055441	MS.gene057140	0.831579	1.54E-55	-1.69E-46
MS.gene055441	MS.gene057234	0.813437	2.56E-51	-1.69E-46
MS.gene055441	MS.gene057754	0.812999	3.20E-51	-1.69E-46
MS.gene055441	MS.gene058054	0.822379	2.45E-53	-1.69E-46
MS.gene055441	MS.gene058055	0.843921	1.04E-58	-1.69E-46
MS.gene055441	MS.gene058238	0.823651	1.23E-53	-1.69E-46
MS.gene055441	MS.gene058906	0.811952	5.41E-51	-1.69E-46
MS.gene055441	MS.gene059830	0.804241	2.37E-49	-1.69E-46
MS.gene055441	MS.gene059898	0.805102	1.57E-49	-1.69E-46
MS.gene055441	MS.gene06001	0.807445	5.04E-50	-1.69E-46
MS.gene055441	MS.gene060084	0.83021	3.34E-55	-1.69E-46
MS.gene055441	MS.gene060297	0.847077	1.45E-59	-1.69E-46
MS.gene055441	MS.gene060586	0.802537	5.35E-49	-1.69E-46
MS.gene055441	MS.gene060869	0.820786	5.71E-53	-1.69E-46
MS.gene055441	MS.gene060870	0.807501	4.90E-50	-1.69E-46
MS.gene055441	MS.gene06131	0.818301	2.11E-52	-1.69E-46
MS.gene055441	MS.gene06172	0.804517	2.08E-49	-1.69E-46
MS.gene055441	MS.gene061958	0.809429	1.90E-50	-1.69E-46
MS.gene055441	MS.gene062351	0.807055	6.09E-50	-1.69E-46
MS.gene055441	MS.gene063119	0.82231	2.54E-53	-1.69E-46
MS.gene055441	MS.gene063544	0.805773	1.14E-49	-1.69E-46
MS.gene055441	MS.gene064071	0.819656	1.04E-52	-1.69E-46
MS.gene055441	MS.gene064072	0.820855	5.50E-53	-1.69E-46
MS.gene055441	MS.gene06503	0.80319	3.92E-49	-1.69E-46
MS.gene055441	MS.gene06594	0.81806	2.39E-52	-1.69E-46
MS.gene055441	MS.gene066035	0.805608	1.23E-49	-1.69E-46
MS.gene055441	MS.gene066061	0.805443	1.33E-49	-1.69E-46
MS.gene055441	MS.gene066362	0.802204	6.27E-49	-1.69E-46
MS.gene055441	MS.gene066427	0.81195	5.42E-51	-1.69E-46
MS.gene055441	MS.gene06667	0.821607	3.69E-53	-1.69E-46
MS.gene055441	MS.gene067635	0.800856	1.18E-48	-1.69E-46
MS.gene055441	MS.gene067746	0.801129	1.04E-48	-1.69E-46
MS.gene055441	MS.gene06806	0.822028	2.95E-53	-1.69E-46
MS.gene055441	MS.gene06836	0.825718	4.02E-54	-1.69E-46
MS.gene055441	MS.gene06837	0.82048	6.71E-53	-1.69E-46
MS.gene055441	MS.gene06865	0.810633	1.05E-50	-1.69E-46
MS.gene055441	MS.gene068695	0.804851	1.77E-49	-1.69E-46
MS.gene055441	MS.gene068752	0.807587	4.70E-50	-1.69E-46
MS.gene055441	MS.gene06883	0.805139	1.54E-49	-1.69E-46
MS.gene055441	MS.gene06989	0.827826	1.26E-54	-1.69E-46
MS.gene055441	MS.gene070222	0.817831	2.69E-52	-1.69E-46
MS.gene055441	MS.gene07084	0.802709	4.93E-49	-1.69E-46
MS.gene055441	MS.gene07089	0.800578	1.35E-48	-1.69E-46
MS.gene055441	MS.gene071230	0.80293	4.44E-49	-1.69E-46
MS.gene055441	MS.gene072023	0.810493	1.12E-50	-1.69E-46
MS.gene055441	MS.gene072150	0.811784	5.89E-51	-1.69E-46
MS.gene055441	MS.gene07217	0.825311	5.02E-54	-1.69E-46
MS.gene055441	MS.gene072386	0.80485	1.77E-49	-1.69E-46
MS.gene055441	MS.gene072564	0.806146	9.48E-50	-1.69E-46
MS.gene055441	MS.gene072565	0.809178	2.15E-50	-1.69E-46
MS.gene055441	MS.gene072969	0.807149	5.82E-50	-1.69E-46
MS.gene055441	MS.gene073332	0.805232	1.47E-49	-1.69E-46
MS.gene055441	MS.gene073564	0.833406	5.43E-56	-1.69E-46
MS.gene055441	MS.gene07368	0.812557	3.99E-51	-1.69E-46
MS.gene055441	MS.gene074000	0.840447	8.65E-58	-1.69E-46
MS.gene055441	MS.gene074369	0.805306	1.42E-49	-1.69E-46
MS.gene055441	MS.gene08545	0.804544	2.05E-49	-1.69E-46
MS.gene055441	MS.gene08608	0.809703	1.66E-50	-1.69E-46
MS.gene055441	MS.gene09032	0.828723	7.67E-55	-1.69E-46
MS.gene055441	MS.gene09400	0.80579	1.13E-49	-1.69E-46
MS.gene055441	MS.gene20407	-0.808687	2.74E-50	-1.69E-46
MS.gene055441	MS.gene20939	0.805871	1.08E-49	-1.69E-46
MS.gene055441	MS.gene21109	0.807896	4.04E-50	-1.69E-46
MS.gene055441	MS.gene21659	0.827288	1.70E-54	-1.69E-46
MS.gene055441	MS.gene22314	0.829723	4.39E-55	-1.69E-46
MS.gene055441	MS.gene22343	0.80607	9.83E-50	-1.69E-46
MS.gene055441	MS.gene22968	0.825727	4.00E-54	-1.69E-46
MS.gene055441	MS.gene23059	0.812495	4.12E-51	-1.69E-46
MS.gene055441	MS.gene23954	0.802848	4.62E-49	-1.69E-46
MS.gene055441	MS.gene25475	0.84594	2.97E-59	-1.69E-46
MS.gene055441	MS.gene25942	0.809694	1.67E-50	-1.69E-46
MS.gene055441	MS.gene26267	0.808488	3.02E-50	-1.69E-46
MS.gene055441	MS.gene26288	0.814118	1.81E-51	-1.69E-46
MS.gene055441	MS.gene26666	0.807788	4.26E-50	-1.69E-46
MS.gene055441	MS.gene26974	0.801036	1.09E-48	-1.69E-46
MS.gene055441	MS.gene27991	0.802206	6.26E-49	-1.69E-46
MS.gene055441	MS.gene28159	0.810716	1.00E-50	-1.69E-46
MS.gene055441	MS.gene28835	0.811638	6.33E-51	-1.69E-46
MS.gene055441	MS.gene28943	0.820112	8.15E-53	-1.69E-46
MS.gene055441	MS.gene29719	0.802716	4.92E-49	-1.69E-46
MS.gene055441	MS.gene30560	0.802945	4.41E-49	-1.69E-46
MS.gene055441	MS.gene30668	0.8105	1.12E-50	-1.69E-46
MS.gene055441	MS.gene33183	0.822942	1.81E-53	-1.69E-46
MS.gene055441	MS.gene34314	-0.803159	3.98E-49	-1.69E-46
MS.gene055441	MS.gene34317	-0.804227	2.39E-49	-1.69E-46
MS.gene055441	MS.gene35030	0.807741	4.36E-50	-1.69E-46
MS.gene055441	MS.gene35214	0.808508	2.99E-50	-1.69E-46
MS.gene055441	MS.gene35799	0.808477	3.04E-50	-1.69E-46
MS.gene055441	MS.gene35826	0.820474	6.73E-53	-1.69E-46
MS.gene055441	MS.gene35930	0.819268	1.27E-52	-1.69E-46
MS.gene055441	MS.gene36124	0.810463	1.14E-50	-1.69E-46
MS.gene055441	MS.gene36146	0.848882	4.62E-60	-1.69E-46
MS.gene055441	MS.gene36147	0.818325	2.08E-52	-1.69E-46
MS.gene055441	MS.gene36242	0.837312	5.60E-57	-1.69E-46
MS.gene055441	MS.gene36245	0.827418	1.58E-54	-1.69E-46
MS.gene055441	MS.gene36331	0.804127	2.51E-49	-1.69E-46
MS.gene055441	MS.gene37238	0.814268	1.68E-51	-1.69E-46
MS.gene055441	MS.gene37419	0.806633	7.48E-50	-1.69E-46
MS.gene055441	MS.gene37653	0.817488	3.21E-52	-1.69E-46
MS.gene055441	MS.gene38162	0.800013	1.76E-48	-1.69E-46
MS.gene055441	MS.gene38786	0.821618	3.67E-53	-1.69E-46
MS.gene055441	MS.gene39139	0.802486	5.48E-49	-1.69E-46
MS.gene055441	MS.gene39317	0.810098	1.36E-50	-1.69E-46
MS.gene055441	MS.gene40648	0.809045	2.30E-50	-1.69E-46
MS.gene055441	MS.gene41377	0.806892	6.60E-50	-1.69E-46
MS.gene055441	MS.gene43602	0.812346	4.44E-51	-1.69E-46
MS.gene055441	MS.gene44007	0.807893	4.05E-50	-1.69E-46
MS.gene055441	MS.gene44260	0.8528	3.64E-61	-1.69E-46
MS.gene055441	MS.gene44390	0.801377	9.27E-49	-1.69E-46
MS.gene055441	MS.gene44540	0.808105	3.65E-50	-1.69E-46
MS.gene055441	MS.gene45374	0.801585	8.40E-49	-1.69E-46
MS.gene055441	MS.gene46832	0.80865	2.79E-50	-1.69E-46
MS.gene055441	MS.gene47798	0.805925	1.06E-49	-1.69E-46
MS.gene055441	MS.gene48283	0.802046	6.76E-49	-1.69E-46
MS.gene055441	MS.gene48326	0.800467	1.42E-48	-1.69E-46
MS.gene055441	MS.gene48393	-0.81391	2.02E-51	-1.69E-46
MS.gene055441	MS.gene49486	0.821608	3.69E-53	-1.69E-46
MS.gene055441	MS.gene49816	0.810021	1.42E-50	-1.69E-46
MS.gene055441	MS.gene50641	0.81981	9.55E-53	-1.69E-46
MS.gene055441	MS.gene51111	0.803608	3.21E-49	-1.69E-46
MS.gene055441	MS.gene51472	0.809034	2.31E-50	-1.69E-46
MS.gene055441	MS.gene51557	0.812775	3.58E-51	-1.69E-46
MS.gene055441	MS.gene51658	0.830947	2.20E-55	-1.69E-46
MS.gene055441	MS.gene52448	0.806063	9.87E-50	-1.69E-46
MS.gene055441	MS.gene55263	0.800957	1.13E-48	-1.69E-46
MS.gene055441	MS.gene55396	0.810318	1.22E-50	-1.69E-46
MS.gene055441	MS.gene56132	0.80575	1.15E-49	-1.69E-46
MS.gene055441	MS.gene56493	0.816481	5.41E-52	-1.69E-46
MS.gene055441	MS.gene56980	0.809569	1.77E-50	-1.69E-46
MS.gene055441	MS.gene57210	0.833146	6.31E-56	-1.69E-46
MS.gene055441	MS.gene58438	0.806404	8.36E-50	-1.69E-46
MS.gene055441	MS.gene59133	0.801402	9.16E-49	-1.69E-46
MS.gene055441	MS.gene60265	0.802909	4.49E-49	-1.69E-46
MS.gene055441	MS.gene60374	0.801797	7.60E-49	-1.69E-46
MS.gene055441	MS.gene61542	0.820996	5.10E-53	-1.69E-46
MS.gene055441	MS.gene62006	0.824371	8.37E-54	-1.69E-46
MS.gene055441	MS.gene62394	0.811943	5.44E-51	-1.69E-46
MS.gene055441	MS.gene62623	0.809258	2.07E-50	-1.69E-46
MS.gene055441	MS.gene63902	0.816612	5.06E-52	-1.69E-46
MS.gene055441	MS.gene65412	0.836041	1.18E-56	-1.69E-46
MS.gene055441	MS.gene65518	0.801528	8.63E-49	-1.69E-46
MS.gene055441	MS.gene66089	0.80577	1.14E-49	-1.69E-46
MS.gene055441	MS.gene67090	0.805802	1.12E-49	-1.69E-46
MS.gene055441	MS.gene67107	0.823074	1.68E-53	-1.69E-46
MS.gene055441	MS.gene68171	0.83905	2.00E-57	-1.69E-46
MS.gene055441	MS.gene68810	0.808153	3.56E-50	-1.69E-46
MS.gene055441	MS.gene68840	0.815703	8.07E-52	-1.69E-46
MS.gene055441	MS.gene68873	0.800456	1.43E-48	-1.69E-46
MS.gene055441	MS.gene68877	0.811393	7.16E-51	-1.69E-46
MS.gene055441	MS.gene68933	0.804689	1.92E-49	-1.69E-46
MS.gene055441	MS.gene68959	0.803579	3.26E-49	-1.69E-46
MS.gene055441	MS.gene69314	0.834563	2.79E-56	-1.69E-46
MS.gene055441	MS.gene69477	0.821425	4.07E-53	-1.69E-46
MS.gene055441	MS.gene69649	0.812709	3.70E-51	-1.69E-46
MS.gene055441	MS.gene70314	0.802964	4.37E-49	-1.69E-46
MS.gene055441	MS.gene70378	0.848724	5.11E-60	-1.69E-46
MS.gene055441	MS.gene70514	0.81628	6.00E-52	-1.69E-46
MS.gene055441	MS.gene70613	0.808731	2.68E-50	-1.69E-46
MS.gene055441	MS.gene70819	0.827219	1.77E-54	-1.69E-46
MS.gene055441	MS.gene70989	-0.805735	1.16E-49	-1.69E-46
MS.gene055441	MS.gene71292	0.815131	1.08E-51	-1.69E-46
MS.gene055441	MS.gene71547	0.81184	5.72E-51	-1.69E-46
MS.gene055441	MS.gene72128	0.810411	1.17E-50	-1.69E-46
MS.gene055441	MS.gene72130	0.808313	3.29E-50	-1.69E-46
MS.gene055441	MS.gene72312	0.81669	4.86E-52	-1.69E-46
MS.gene055441	MS.gene74938	0.809598	1.75E-50	-1.69E-46
MS.gene055441	MS.gene75128	0.811864	5.66E-51	-1.69E-46
MS.gene055441	MS.gene75477	0.811024	8.61E-51	-1.69E-46
MS.gene055441	MS.gene75884	0.803555	3.30E-49	-1.69E-46
MS.gene055441	MS.gene75923	0.80423	2.39E-49	-1.69E-46
MS.gene055441	MS.gene76035	0.820407	6.97E-53	-1.69E-46
MS.gene055441	MS.gene76478	0.85787	1.22E-62	-1.69E-46
MS.gene055441	MS.gene76514	0.807227	5.60E-50	-1.69E-46
MS.gene055441	MS.gene76515	0.810689	1.02E-50	-1.69E-46
MS.gene055441	MS.gene76834	0.831849	1.32E-55	-1.69E-46
MS.gene055441	MS.gene77647	0.807574	4.73E-50	-1.69E-46
MS.gene055441	MS.gene78247	0.809046	2.30E-50	-1.69E-46
MS.gene055441	MS.gene78478	0.802119	6.53E-49	-1.69E-46
MS.gene055441	MS.gene78682	0.824377	8.34E-54	-1.69E-46
MS.gene055441	MS.gene80283	0.815872	7.40E-52	-1.69E-46
MS.gene055441	MS.gene80298	0.812806	3.52E-51	-1.69E-46
MS.gene055441	MS.gene81361	0.803052	4.19E-49	-1.69E-46
MS.gene055441	MS.gene81715	0.819005	1.46E-52	-1.69E-46
MS.gene055441	MS.gene82040	0.824037	1.00E-53	-1.69E-46
MS.gene055441	MS.gene82350	0.827005	1.99E-54	-1.69E-46
MS.gene055441	MS.gene82352	0.824192	9.22E-54	-1.69E-46
MS.gene055441	MS.gene82624	0.809904	1.50E-50	-1.69E-46
MS.gene055441	MS.gene82767	0.818073	2.37E-52	-1.69E-46
MS.gene055441	MS.gene82976	0.821133	4.75E-53	-1.69E-46
MS.gene055441	MS.gene82978	0.830667	2.58E-55	-1.69E-46
MS.gene055441	MS.gene84086	0.800455	1.43E-48	-1.69E-46
MS.gene055441	MS.gene84382	0.805128	1.55E-49	-1.69E-46
MS.gene055441	MS.gene86350	0.824602	7.38E-54	-1.69E-46
MS.gene055441	MS.gene86392	0.802642	5.09E-49	-1.69E-46
MS.gene055441	MS.gene87972	0.811647	6.31E-51	-1.69E-46
MS.gene055441	MS.gene88229	0.842128	3.12E-58	-1.69E-46
MS.gene055441	MS.gene88371	0.827746	1.32E-54	-1.69E-46
MS.gene055441	MS.gene88427	0.810469	1.13E-50	-1.69E-46
MS.gene055441	MS.gene88976	0.81131	7.46E-51	-1.69E-46
MS.gene055441	MS.gene89060	0.828715	7.71E-55	-1.69E-46
MS.gene055441	MS.gene89434	0.803867	2.84E-49	-1.69E-46
MS.gene055441	MS.gene89677	0.829684	4.49E-55	-1.69E-46
MS.gene055441	MS.gene90199	0.803518	3.35E-49	-1.69E-46
MS.gene055441	MS.gene91280	0.813683	2.26E-51	-1.69E-46
MS.gene055441	MS.gene91524	0.800025	1.75E-48	-1.69E-46
MS.gene055441	MS.gene92186	0.817463	3.25E-52	-1.69E-46
MS.gene055441	MS.gene92338	0.825088	5.67E-54	-1.69E-46
MS.gene055441	MS.gene92572	0.80256	5.29E-49	-1.69E-46
MS.gene055441	MS.gene92819	0.808901	2.47E-50	-1.69E-46
MS.gene055441	MS.gene93202	0.811043	8.53E-51	-1.69E-46
MS.gene055441	MS.gene94183	0.807303	5.40E-50	-1.69E-46
MS.gene055441	MS.gene95070	0.827373	1.62E-54	-1.69E-46
MS.gene055441	MS.gene95469	0.807393	5.17E-50	-1.69E-46
MS.gene055441	MS.gene96220	0.821474	3.96E-53	-1.69E-46
MS.gene055441	MS.gene96799	0.825874	3.70E-54	-1.69E-46
MS.gene055441	MS.gene97411	0.809119	2.21E-50	-1.69E-46
MS.gene055441	MS.gene98141	0.828621	8.12E-55	-1.69E-46
MS.gene055441	MS.gene98889	0.80022	1.60E-48	-1.69E-46
MS.gene055441	MS.gene99313	0.837444	5.18E-57	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	MTR_5g005470	92.500	160	3	1	1	151	1	160	3.09e-105	299
MS.gene055441.t1	MTR_5g016200	73.125	160	31	2	1	151	1	157	3.55e-78	230
MS.gene055441.t1	MTR_5g016220	71.698	159	36	1	2	151	127	285	1.37e-77	233
MS.gene055441.t1	MTR_5g016220	74.803	127	31	1	1	127	1	126	1.44e-62	195
MS.gene055441.t1	MTR_6g088010	51.852	162	67	2	1	151	1	162	7.20e-50	159
MS.gene055441.t1	MTR_6g042230	51.250	160	68	2	1	151	1	159	4.86e-48	154
MS.gene055441.t1	MTR_6g088020	52.761	163	64	3	1	151	1	162	1.76e-47	153
MS.gene055441.t1	MTR_7g090220	31.788	151	91	3	10	150	53	201	3.66e-17	75.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055441.t1	AT3G22320	64.780	159	47	1	2	151	1	159	1.62e-71	214
MS.gene055441.t1	AT5G57980	36.250	160	89	4	5	151	5	164	2.13e-28	104
MS.gene055441.t1	AT3G57080	32.704	159	95	4	3	151	20	176	1.21e-18	79.3
MS.gene055441.t1	AT2G41340	33.544	158	93	4	4	151	17	172	6.01e-17	73.9
MS.gene055441.t1	AT2G41340	33.544	158	93	4	4	151	17	172	7.63e-17	73.9
MS.gene055441.t1	AT2G41340	33.544	158	93	4	4	151	17	172	1.44e-16	73.6
MS.gene055441.t1	AT3G54490	28.387	155	99	3	7	151	35	187	7.25e-11	58.5

Find 18 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTTCAGAAACACAAGTTT+TGG	0.351766	5.1:+13374072	None:intergenic
TTTGTCTTTGAAATCGTGTT+TGG	0.360361	5.1:+13374291	None:intergenic
AATTGCTTCCAAATTTCATT+TGG	0.361732	5.1:-13374053	MS.gene055441:CDS
ACACCGACTTTGGCTTCTTC+AGG	0.396133	5.1:+13374184	None:intergenic
AATAGCTCTATAAACATTCT+CGG	0.403161	5.1:+13374126	None:intergenic
GACAGTGTATCTCTCAAGTA+AGG	0.434087	5.1:+13373731	None:intergenic
CAATGAAGACTTACACCAAC+AGG	0.446390	5.1:-13374156	MS.gene055441:CDS
TCGTTGAGAATCTGATGTTC+CGG	0.447338	5.1:+13373768	None:intergenic
AATCACCGACGAGGTAGTTT+CGG	0.453235	5.1:+13374329	None:intergenic
AAAGAGCATGTGCCTTGTGC+CGG	0.514977	5.1:-13373787	MS.gene055441:intron
TTTGGCAAAGGGAGTAAGAC+TGG	0.523494	5.1:+13374090	None:intergenic
CACGATTTCAAAGACAAATA+CGG	0.530990	5.1:-13374286	MS.gene055441:CDS
GAATCTGATGTTCCGGCACA+AGG	0.545718	5.1:+13373775	None:intergenic
ATTCTCGGAATTCATCCTGT+TGG	0.579040	5.1:+13374141	None:intergenic
AAGACATAGATCTGATCAGA+AGG	0.597739	5.1:+13374211	None:intergenic
TTTCCTGAAGAAGCCAAAGT+CGG	0.608753	5.1:-13374187	MS.gene055441:CDS
AAAGACCGAAACTACCTCGT+CGG	0.681273	5.1:-13374334	MS.gene055441:CDS
TGAGTTCGAAATCACCGACG+AGG	0.765537	5.1:+13374320	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAACTTCCAAATGAAATT+TGG	+	chr5.1:13374092-13374111	None:intergenic	20.0%
!!!	TCATTTTCTCAAATTATCAT+CGG	+	chr5.1:13374209-13374228	None:intergenic	20.0%
!	AATTGCTTCCAAATTTCATT+TGG	-	chr5.1:13374081-13374100	MS.gene055441:CDS	25.0%
!	ATAAACCGCATAAACAAATT+AGG	+	chr5.1:13374144-13374163	None:intergenic	25.0%
!	GTTATTTATACCTGACATAT+TGG	-	chr5.1:13374177-13374196	MS.gene055441:CDS	25.0%
!	TAAACCGCATAAACAAATTA+GGG	+	chr5.1:13374143-13374162	None:intergenic	25.0%
!!	AATAGCTCTATAAACATTCT+CGG	+	chr5.1:13374011-13374030	None:intergenic	25.0%
!!	AATTTCAGAAACACAAGTTT+TGG	+	chr5.1:13374065-13374084	None:intergenic	25.0%
!!	ATTTCATTTGGAAGTTTTTC+AGG	-	chr5.1:13374093-13374112	MS.gene055441:CDS	25.0%
!!!	ATCAGAAGGTTTATCTTTTT+TGG	+	chr5.1:13373912-13373931	None:intergenic	25.0%
!!!	TAAACCCTAATTTGTTTATG+CGG	-	chr5.1:13374136-13374155	MS.gene055441:CDS	25.0%
	CACGATTTCAAAGACAAATA+CGG	-	chr5.1:13373848-13373867	MS.gene055441:intron	30.0%
!!	TTTGTCTTTGAAATCGTGTT+TGG	+	chr5.1:13373846-13373865	None:intergenic	30.0%
	AAGACATAGATCTGATCAGA+AGG	+	chr5.1:13373926-13373945	None:intergenic	35.0%
	GCGGTTTATAAGAGTTAGTT+AGG	-	chr5.1:13374155-13374174	MS.gene055441:CDS	35.0%
!	CTCAAGTAAGGTTTTCTTCT+CGG	+	chr5.1:13374394-13374413	None:intergenic	35.0%
!!	AGAAACACAAGTTTTGGCAA+AGG	+	chr5.1:13374059-13374078	None:intergenic	35.0%
!!	GAAACACAAGTTTTGGCAAA+GGG	+	chr5.1:13374058-13374077	None:intergenic	35.0%
	ATTCTCGGAATTCATCCTGT+TGG	+	chr5.1:13373996-13374015	None:intergenic	40.0%
	CAATGAAGACTTACACCAAC+AGG	-	chr5.1:13373978-13373997	MS.gene055441:intron	40.0%
	TCGTTGAGAATCTGATGTTC+CGG	+	chr5.1:13374369-13374388	None:intergenic	40.0%
	TGCTTCAGTATAACTGTTGC+TGG	-	chr5.1:13374281-13374300	MS.gene055441:CDS	40.0%
	TTTCCTGAAGAAGCCAAAGT+CGG	-	chr5.1:13373947-13373966	MS.gene055441:intron	40.0%
!	GCATTTGCATCACTGTTTTG+CGG	+	chr5.1:13373778-13373797	None:intergenic	40.0%
!!!	CATTGTTTTCACACCGACTT+TGG	+	chr5.1:13373963-13373982	None:intergenic	40.0%
	AAAGACCGAAACTACCTCGT+CGG	-	chr5.1:13373800-13373819	MS.gene055441:intron	45.0%
	AATCACCGACGAGGTAGTTT+CGG	+	chr5.1:13373808-13373827	None:intergenic	45.0%
	TTTGGCAAAGGGAGTAAGAC+TGG	+	chr5.1:13374047-13374066	None:intergenic	45.0%
!!	TCGGTGTTGACCAATATGTC+AGG	+	chr5.1:13374190-13374209	None:intergenic	45.0%
	ATGTGTCCTTCTAGTCCGAG+AGG	-	chr5.1:13374246-13374265	MS.gene055441:CDS	50.0%
	GAATCTGATGTTCCGGCACA+AGG	+	chr5.1:13374362-13374381	None:intergenic	50.0%
	TGAGTTCGAAATCACCGACG+AGG	+	chr5.1:13373817-13373836	None:intergenic	50.0%
!	AAAGAGCATGTGCCTTGTGC+CGG	-	chr5.1:13374347-13374366	MS.gene055441:CDS	50.0%
!!	ACACCGACTTTGGCTTCTTC+AGG	+	chr5.1:13373953-13373972	None:intergenic	50.0%
	GCACAAGCACAGACACCTCT+CGG	+	chr5.1:13374264-13374283	None:intergenic	55.0%
	TGGTGTGTGTGTGTGTGTGC+AGG	-	chr5.1:13374301-13374320	MS.gene055441:CDS	55.0%
	TGTGTGTGTGTGTGTGCAGG+AGG	-	chr5.1:13374304-13374323	MS.gene055441:CDS	55.0%
!	CAGACACCTCTCGGACTAGA+AGG	+	chr5.1:13374255-13374274	None:intergenic	55.0%
	GTGTGTGTGTGTGCAGGAGG+CGG	-	chr5.1:13374307-13374326	MS.gene055441:CDS	60.0%
	TGTGCAGGAGGCGGAGTTGC+TGG	-	chr5.1:13374316-13374335	MS.gene055441:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	13373734	13374422	13373734	ID=MS.gene055441
chr5.1	mRNA	13373734	13374422	13373734	ID=MS.gene055441.t1;Parent=MS.gene055441
chr5.1	exon	13374042	13374422	13374042	ID=MS.gene055441.t1.exon1;Parent=MS.gene055441.t1
chr5.1	CDS	13374042	13374422	13374042	ID=cds.MS.gene055441.t1;Parent=MS.gene055441.t1
chr5.1	exon	13373734	13373805	13373734	ID=MS.gene055441.t1.exon2;Parent=MS.gene055441.t1
chr5.1	CDS	13373734	13373805	13373734	ID=cds.MS.gene055441.t1;Parent=MS.gene055441.t1

Gene Sequence

>MS.gene055441

ATGGTGTTTTCAGAGGAAGAAATAACGCGACTATACAGAATCCGCAAAACAGTGATGCAAATGCTGAAAGACCGAAACTACCTCGTCGGTGATTTCGAACTCAACATGTCCAAACACGATTTCAAAGACAAATACGGCGAGAATATGAAGAGAGAAGATCTTGTTATTAACAAAACCAAAAAAGATAAACCTTCTGATCAGATCTATGTCTTCTTTCCTGAAGAAGCCAAAGTCGGTGTGAAAACAATGAAGACTTACACCAACAGGATGAATTCCGAGAATGTTTATAGAGCTATTCTTGTTTGTCAGACCAGTCTTACTCCCTTTGCCAAAACTTGTGTTTCTGAAATTGCTTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCTTTTGTTTGTTTTATAAACCCTAATTTGTTTATGCGGTTTATAAGAGTTAGTTAGGTTATTTATACCTGACATATTGGTCAACACCGATGATAATTTGAGAAAATGAATTAATTGAATGTAATTATGTGTCCTTCTAGTCCGAGAGGTGTCTGTGCTTGTGCTTCAGTATAACTGTTGCTGGTGTGTGTGTGTGTGTGCAGGAGGCGGAGTTGCTGGTTAATATAAAAGAGCATGTGCCTTGTGCCGGAACATCAGATTCTCAACGACACCGAGAAGAAAACCTTACTTGAGAGATACACT

Protein sequence

>MS.gene055441.t1

MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEVFQSMCLVPEHQILNDTEKKTLLERYT