AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30726

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30726.t1 MTR_6g047800 96.117 309 11 1 1 308 1 309 0.0 610
MS.gene30726.t1 MTR_6g047800 96.000 300 11 1 10 308 1 300 0.0 592
MS.gene30726.t1 MTR_2g014590 78.788 231 49 0 1 231 2 232 3.21e-138 390
MS.gene30726.t1 MTR_2g014570 67.742 62 15 3 246 307 6 62 1.59e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30726.t1 AT5G14600 74.286 315 74 2 1 308 1 315 1.23e-176 491

Find 66 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTTGTTGTTATGTATT+TGG 0.132518 6.2:+41849051 MS.gene30726:CDS
TCCTGAAGAGTTTGCTGGCT+TGG 0.242918 6.2:+41850644 MS.gene30726:CDS
TAGCTCCTACTCCTGAATTA+TGG 0.261887 6.2:+41848981 MS.gene30726:CDS
TTCTAATTCTTCTTCTGTTA+TGG 0.267894 6.2:+41851063 MS.gene30726:CDS
AACAATTAGTAACGGTGATT+TGG 0.271982 6.2:+41848802 MS.gene30726:CDS
CGAAGTTCGAGAAGGGAAAA+TGG 0.297664 6.2:+41850949 MS.gene30726:CDS
GTCTAAAGTATTCAACAATA+AGG 0.308450 6.2:+41848940 MS.gene30726:CDS
TTGTTTATGTGAAAGATATA+AGG 0.311677 6.2:+41850900 MS.gene30726:intron
GGTTGTGTCGTTCTTGAATC+TGG 0.320717 6.2:+41849085 MS.gene30726:CDS
GATTGGATAGGAAAGTCATT+TGG 0.331486 6.2:+41848917 MS.gene30726:CDS
AAAACTAAAGTCCATAATTC+AGG 0.343342 6.2:-41848992 None:intergenic
GCCAAGCCAGCAAACTCTTC+AGG 0.354828 6.2:-41850645 None:intergenic
ATGTATTTGGAGATTGTTCC+TGG 0.385811 6.2:+41849064 MS.gene30726:CDS
CTTGAATCTGGTACTGGAAG+TGG 0.400748 6.2:+41849097 MS.gene30726:CDS
GACGGTAATGACGGCTCTAA+TGG 0.408113 6.2:+41850986 MS.gene30726:CDS
GATCCCTCAGATACCGTTAC+TGG 0.416695 6.2:-41848857 None:intergenic
ATTGGATAGGAAAGTCATTT+GGG 0.422230 6.2:+41848918 MS.gene30726:CDS
AGGGATGACTTTGAGAGGAT+TGG 0.463053 6.2:+41850570 MS.gene30726:intron
TCTAAAGTATTCAACAATAA+GGG 0.468151 6.2:+41848941 MS.gene30726:CDS
ATTAAATGATATCTTTCTTG+TGG 0.478006 6.2:-41848777 None:intergenic
GTCGTTCTTGAATCTGGTAC+TGG 0.478619 6.2:+41849091 MS.gene30726:CDS
TCGGGAAGTACCGGTGAAGT+TGG 0.488752 6.2:-41850805 None:intergenic
CTTTAACTACTTCACTTGCA+AGG 0.505822 6.2:+41849122 MS.gene30726:CDS
ATTTGGCAATTGTTTATGAA+AGG 0.507354 6.2:+41848819 MS.gene30726:CDS
ATGGAAAGCTCTGAGATTGA+CGG 0.512304 6.2:+41850968 MS.gene30726:CDS
TTTAAACATTCAGATTGGAT+AGG 0.513874 6.2:+41848905 MS.gene30726:CDS
GCAAGGGCAGTTGCTCCTAC+AGG 0.518867 6.2:+41849139 MS.gene30726:CDS
CTTGTAGGGATGACTTTGAG+AGG 0.533942 6.2:+41850565 MS.gene30726:intron
TTGAATCTGGTACTGGAAGT+GGG 0.536848 6.2:+41849098 MS.gene30726:CDS
CGTTGTACTTGTTCAATACA+CGG 0.539892 6.2:-41850762 None:intergenic
ATAAGCAGCTTAGTCACTGC+AGG 0.541401 6.2:+41850594 MS.gene30726:CDS
AAAGTCCATAATTCAGGAGT+AGG 0.545264 6.2:-41848986 None:intergenic
GCAGGAGTGAGGGACATTCA+AGG 0.551907 6.2:+41850612 MS.gene30726:CDS
GAAGCCAGTAACGGTATCTG+AGG 0.567229 6.2:+41848853 MS.gene30726:CDS
GAACGTCGCCTCCTCTTGCA+AGG 0.569902 6.2:-41851016 None:intergenic
GGAATAGCTAGCCAAGGTTG+AGG 0.572196 6.2:-41850690 None:intergenic
GTGAGGGACATTCAAGGTGA+GGG 0.573477 6.2:+41850618 MS.gene30726:CDS
ATGGTTCTCTTCCTTGCAAG+AGG 0.575002 6.2:+41851005 MS.gene30726:CDS
TTTAACTACTTCACTTGCAA+GGG 0.578833 6.2:+41849123 MS.gene30726:CDS
GCTTAGTCACTGCAGGAGTG+AGG 0.581552 6.2:+41850601 MS.gene30726:CDS
ACAATGCAATCCAACTTCAC+CGG 0.584109 6.2:+41850795 MS.gene30726:CDS
GTTCTCTTCCTTGCAAGAGG+AGG 0.584259 6.2:+41851008 MS.gene30726:CDS
GTTGTACTTGTTCAATACAC+GGG 0.584848 6.2:-41850761 None:intergenic
GATTCAAGAACGACACAACC+AGG 0.585429 6.2:-41849082 None:intergenic
AAGAGGAGGCGACGTTCAGA+TGG 0.586476 6.2:+41851022 MS.gene30726:CDS
TCTGAGATTGACGGTAATGA+CGG 0.588128 6.2:+41850977 MS.gene30726:CDS
AGTAACGGTATCTGAGGGAT+CGG 0.588437 6.2:+41848859 MS.gene30726:CDS
CTTAGTCACTGCAGGAGTGA+GGG 0.595594 6.2:+41850602 MS.gene30726:CDS
TTTAATAGAACAATTAGTAA+CGG 0.596180 6.2:+41848794 MS.gene30726:CDS
AACGTATAAACATGTCCTGT+AGG 0.611682 6.2:-41849154 None:intergenic
CGGACATACGAAGTTCGAGA+AGG 0.611846 6.2:+41850941 MS.gene30726:CDS
CTCGAACTTCGTATGTCCGT+AGG 0.612530 6.2:-41850937 None:intergenic
TGACCTCTAGCTTCACCACA+TGG 0.618356 6.2:-41851091 None:intergenic
AGTGAGGGACATTCAAGGTG+AGG 0.624772 6.2:+41850617 MS.gene30726:CDS
GGACATACGAAGTTCGAGAA+GGG 0.625372 6.2:+41850942 MS.gene30726:CDS
TCTGTTATGGCTAGACCATG+TGG 0.628693 6.2:+41851076 MS.gene30726:CDS
AACAAAGATCTGGATCAGCT+AGG 0.636973 6.2:+41849188 MS.gene30726:CDS
AGACCATGTGGTGAAGCTAG+AGG 0.638065 6.2:+41851088 MS.gene30726:CDS
AAAGTATTCAACAATAAGGG+CGG 0.646223 6.2:+41848944 MS.gene30726:CDS
TATATAGAATCTGTGTCCTG+TGG 0.646737 6.2:-41849018 None:intergenic
GCTGAAGGAATAGCTAGCCA+AGG 0.647664 6.2:-41850696 None:intergenic
ACGTTCAGATGGAGCTAGCG+TGG 0.648036 6.2:+41851033 MS.gene30726:CDS
AAGCCAGTAACGGTATCTGA+GGG 0.657172 6.2:+41848854 MS.gene30726:CDS
TGACAACATGAAGCCAGTAA+CGG 0.669534 6.2:+41848844 MS.gene30726:CDS
GGTGAAGCTAGAGGTCACAC+TGG 0.683965 6.2:+41851097 MS.gene30726:CDS
TTGTACTTGTTCAATACACG+GGG 0.704021 6.2:-41850760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTATATATTGTATTA+CGG - chr6.2:41850202-41850221 None:intergenic 10.0%
!! AGTCAATTATATATAAAACA+AGG - chr6.2:41850263-41850282 None:intergenic 15.0%
!! TTTAATAGAACAATTAGTAA+CGG + chr6.2:41848794-41848813 MS.gene30726:CDS 15.0%
!! AACATATAAAAGAGGAAAAT+CGG - chr6.2:41850827-41850846 None:intergenic 20.0%
!! ACATAAACAAACATATACAA+AGG - chr6.2:41850890-41850909 None:intergenic 20.0%
!! ATTAAATGATATCTTTCTTG+TGG - chr6.2:41848780-41848799 None:intergenic 20.0%
!! GTAATTGCAAGTAATATTAT+TGG + chr6.2:41850413-41850432 MS.gene30726:intron 20.0%
!! TTGTTTATGTGAAAGATATA+AGG + chr6.2:41850900-41850919 MS.gene30726:intron 20.0%
!!! TCTAAAGTATTCAACAATAA+GGG + chr6.2:41848941-41848960 MS.gene30726:CDS 20.0%
!!! TTTTTACAATGGAAAAACTT+AGG + chr6.2:41850149-41850168 MS.gene30726:intron 20.0%
! AAAACTAAAGTCCATAATTC+AGG - chr6.2:41848995-41849014 None:intergenic 25.0%
! ACATATAAAAGAGGAAAATC+GGG - chr6.2:41850826-41850845 None:intergenic 25.0%
! AGTTATCTTTCTTGAAATTC+TGG - chr6.2:41849542-41849561 None:intergenic 25.0%
! AGTTGCATAACATATAAAAG+AGG - chr6.2:41850835-41850854 None:intergenic 25.0%
! ATATACATGTGCTTATCTTT+AGG + chr6.2:41849245-41849264 MS.gene30726:intron 25.0%
! ATTTGGCAATTGTTTATGAA+AGG + chr6.2:41848819-41848838 MS.gene30726:CDS 25.0%
! CTACCAAAAAACTAGAATAA+CGG - chr6.2:41849374-41849393 None:intergenic 25.0%
! GTTATCTTTCTTGAAATTCT+GGG - chr6.2:41849541-41849560 None:intergenic 25.0%
! TGAAATAGAAGATAGTGTTT+CGG - chr6.2:41850319-41850338 None:intergenic 25.0%
! TTATTTAACTGTACTCAATG+CGG + chr6.2:41850482-41850501 MS.gene30726:intron 25.0%
! TTCTAATTCTTCTTCTGTTA+TGG + chr6.2:41851063-41851082 MS.gene30726:CDS 25.0%
! TTTAAACATTCAGATTGGAT+AGG + chr6.2:41848905-41848924 MS.gene30726:CDS 25.0%
!! GTCTAAAGTATTCAACAATA+AGG + chr6.2:41848940-41848959 MS.gene30726:CDS 25.0%
!!! GAGAATGATTTTTTCAATAG+CGG + chr6.2:41849930-41849949 MS.gene30726:intron 25.0%
!!! GTGTTTTTAAACATTCAGAT+TGG + chr6.2:41848900-41848919 MS.gene30726:CDS 25.0%
!!! TCACCAAAAATACGTTTTTT+AGG - chr6.2:41849491-41849510 None:intergenic 25.0%
AACAATTAGTAACGGTGATT+TGG + chr6.2:41848802-41848821 MS.gene30726:CDS 30.0%
ACACATGTATCAAACAATAG+AGG - chr6.2:41849890-41849909 None:intergenic 30.0%
ATTGGATAGGAAAGTCATTT+GGG + chr6.2:41848918-41848937 MS.gene30726:CDS 30.0%
ATTGTAAAAATAAGCCACGT+TGG - chr6.2:41850139-41850158 None:intergenic 30.0%
CTATCTTCTATTTCACATAG+CGG + chr6.2:41850324-41850343 MS.gene30726:intron 30.0%
GAAATAGAAGATAGTGTTTC+GGG - chr6.2:41850318-41850337 None:intergenic 30.0%
GACTTATTTCAACTGTTATG+CGG + chr6.2:41850279-41850298 MS.gene30726:intron 30.0%
GCAAAAATGTTACGATATGA+CGG + chr6.2:41850720-41850739 MS.gene30726:CDS 30.0%
GCTGATATACGAACTTTATT+GGG + chr6.2:41850061-41850080 MS.gene30726:intron 30.0%
GTGTCATCAATAGCATATTA+CGG - chr6.2:41850355-41850374 None:intergenic 30.0%
TATTGTATTACGGTGAATAC+AGG - chr6.2:41850192-41850211 None:intergenic 30.0%
TGATGAATCCGCTAAAAAAA+CGG + chr6.2:41849329-41849348 MS.gene30726:intron 30.0%
TTGTAAAAATAAGCCACGTT+GGG - chr6.2:41850138-41850157 None:intergenic 30.0%
TTTAACTACTTCACTTGCAA+GGG + chr6.2:41849123-41849142 MS.gene30726:CDS 30.0%
! AAAGTATTCAACAATAAGGG+CGG + chr6.2:41848944-41848963 MS.gene30726:CDS 30.0%
! AGCAGAAAAAAGAGACTTTT+AGG + chr6.2:41849410-41849429 MS.gene30726:intron 30.0%
! ATTTGATTTCCATGAGCATA+GGG + chr6.2:41849816-41849835 MS.gene30726:intron 30.0%
! GAAAGATATAAGGACTTTTG+AGG + chr6.2:41850910-41850929 MS.gene30726:intron 30.0%
! TTTCTAGTGTTGTCAACTAT+TGG + chr6.2:41849286-41849305 MS.gene30726:intron 30.0%
!! ATACTTGTTTTTCTCCTTGT+AGG + chr6.2:41850550-41850569 MS.gene30726:intron 30.0%
!! ATCCCTTCATAAATTTGCTA+TGG + chr6.2:41849728-41849747 MS.gene30726:intron 30.0%
!! CAGCTTTGTTGTTATGTATT+TGG + chr6.2:41849051-41849070 MS.gene30726:CDS 30.0%
!! TACTTGTTTTTCTCCTTGTA+GGG + chr6.2:41850551-41850570 MS.gene30726:intron 30.0%
!!! AAACGTATTTTTGGTGAAAC+TGG + chr6.2:41849494-41849513 MS.gene30726:intron 30.0%
!!! AACGTATTTTTGGTGAAACT+GGG + chr6.2:41849495-41849514 MS.gene30726:intron 30.0%
!!! AACGTGGCTTATTTTTACAA+TGG + chr6.2:41850138-41850157 MS.gene30726:intron 30.0%
!!! CCAAAAATACGTTTTTTAGG+CGG - chr6.2:41849488-41849507 None:intergenic 30.0%
!!! TAGCCGTTATTCTAGTTTTT+TGG + chr6.2:41849368-41849387 MS.gene30726:intron 30.0%
AAAGTCCATAATTCAGGAGT+AGG - chr6.2:41848989-41849008 None:intergenic 35.0%
AACGTATAAACATGTCCTGT+AGG - chr6.2:41849157-41849176 None:intergenic 35.0%
ACCCTGCATGCAAATAAAAA+GGG - chr6.2:41850239-41850258 None:intergenic 35.0%
ACTTGAGATGTTCAGTGTAA+AGG + chr6.2:41850511-41850530 MS.gene30726:intron 35.0%
ATAAACATGCCCTTCACAAA+TGG - chr6.2:41849794-41849813 None:intergenic 35.0%
ATCAAACAATAGAGGAAGTC+AGG - chr6.2:41849882-41849901 None:intergenic 35.0%
ATGTATTTGGAGATTGTTCC+TGG + chr6.2:41849064-41849083 MS.gene30726:CDS 35.0%
CATTGACATTCTGAACAGTA+GGG - chr6.2:41850449-41850468 None:intergenic 35.0%
CGCCATAGCAAATTTATGAA+GGG - chr6.2:41849733-41849752 None:intergenic 35.0%
CGTTGTACTTGTTCAATACA+CGG - chr6.2:41850765-41850784 None:intergenic 35.0%
CTTTAACTACTTCACTTGCA+AGG + chr6.2:41849122-41849141 MS.gene30726:CDS 35.0%
GATTGGATAGGAAAGTCATT+TGG + chr6.2:41848917-41848936 MS.gene30726:CDS 35.0%
GCATGCAAATAAAAAGGGAA+TGG - chr6.2:41850234-41850253 None:intergenic 35.0%
GGCTGATATACGAACTTTAT+TGG + chr6.2:41850060-41850079 MS.gene30726:intron 35.0%
GTTGTACTTGTTCAATACAC+GGG - chr6.2:41850764-41850783 None:intergenic 35.0%
TATATAGAATCTGTGTCCTG+TGG - chr6.2:41849021-41849040 None:intergenic 35.0%
TATGTAATACTACACCAGCT+AGG + chr6.2:41849849-41849868 MS.gene30726:intron 35.0%
TTGTACTTGTTCAATACACG+GGG - chr6.2:41850763-41850782 None:intergenic 35.0%
! CATTTGATTTCCATGAGCAT+AGG + chr6.2:41849815-41849834 MS.gene30726:intron 35.0%
! CCGCCTAAAAAACGTATTTT+TGG + chr6.2:41849485-41849504 MS.gene30726:intron 35.0%
! GATTTTCACGAACAAAGATC+TGG + chr6.2:41849178-41849197 MS.gene30726:CDS 35.0%
! TCGGTTTTACAGAATCGATT+CGG + chr6.2:41848878-41848897 MS.gene30726:CDS 35.0%
! TGCTATTGATGACACTTTCA+TGG + chr6.2:41850360-41850379 MS.gene30726:intron 35.0%
!! CCTTCATAAATTTGCTATGG+CGG + chr6.2:41849731-41849750 MS.gene30726:intron 35.0%
!! CTTCATAAATTTGCTATGGC+GGG + chr6.2:41849732-41849751 MS.gene30726:intron 35.0%
!! TCCCTTTTTATTTGCATGCA+GGG + chr6.2:41850235-41850254 MS.gene30726:intron 35.0%
!! TTCCCTTTTTATTTGCATGC+AGG + chr6.2:41850234-41850253 MS.gene30726:intron 35.0%
!!! ATACGTTTTTTAGGCGGTAA+TGG - chr6.2:41849482-41849501 None:intergenic 35.0%
!!! TAGTGTTGCCGTTTTTTTAG+CGG - chr6.2:41849340-41849359 None:intergenic 35.0%
AAAATCGCGATCAAACTCAC+GGG - chr6.2:41849686-41849705 None:intergenic 40.0%
AACAAAGATCTGGATCAGCT+AGG + chr6.2:41849188-41849207 MS.gene30726:CDS 40.0%
ACAATGCAATCCAACTTCAC+CGG + chr6.2:41850795-41850814 MS.gene30726:CDS 40.0%
ACCGCAGAAAATTGTAGGTA+CGG - chr6.2:41849589-41849608 None:intergenic 40.0%
ACTATAGTGCTATCACATGG+TGG + chr6.2:41849954-41849973 MS.gene30726:intron 40.0%
CAAAATCGCGATCAAACTCA+CGG - chr6.2:41849687-41849706 None:intergenic 40.0%
CACCCTGCATGCAAATAAAA+AGG - chr6.2:41850240-41850259 None:intergenic 40.0%
CCGCCATAGCAAATTTATGA+AGG - chr6.2:41849734-41849753 None:intergenic 40.0%
GTATGGTCGGAATCAGAATT+TGG - chr6.2:41849629-41849648 None:intergenic 40.0%
TAGCTCCTACTCCTGAATTA+TGG + chr6.2:41848981-41849000 MS.gene30726:CDS 40.0%
TGACAACATGAAGCCAGTAA+CGG + chr6.2:41848844-41848863 MS.gene30726:CDS 40.0%
TGAGTCTACTATGAAAACCG+TGG + chr6.2:41849984-41850003 MS.gene30726:intron 40.0%
TTAGGCAGTGTTGTCAATTG+TGG + chr6.2:41849428-41849447 MS.gene30726:intron 40.0%
TTCTTGAAATTCTGGGTTCG+CGG - chr6.2:41849534-41849553 None:intergenic 40.0%
TTTCGTTATCAGGACAGTAG+CGG + chr6.2:41850018-41850037 MS.gene30726:intron 40.0%
! ACTGTCCTGATAACGAAACT+GGG - chr6.2:41850016-41850035 None:intergenic 40.0%
! CGTAACATTTTTGCAGCTGA+AGG - chr6.2:41850714-41850733 None:intergenic 40.0%
! GCATTGACATTCTGAACAGT+AGG - chr6.2:41850450-41850469 None:intergenic 40.0%
! GGCTGCTCTTAAATTTTTGC+TGG + chr6.2:41850039-41850058 MS.gene30726:intron 40.0%
! TACTGTCCTGATAACGAAAC+TGG - chr6.2:41850017-41850036 None:intergenic 40.0%
! TCTGAGATTGACGGTAATGA+CGG + chr6.2:41850977-41850996 MS.gene30726:CDS 40.0%
! TTGAATCTGGTACTGGAAGT+GGG + chr6.2:41849098-41849117 MS.gene30726:CDS 40.0%
! TTTTGGATCTACCTCAACCT+TGG + chr6.2:41850679-41850698 MS.gene30726:CDS 40.0%
!! ATGGAAAGCTCTGAGATTGA+CGG + chr6.2:41850968-41850987 MS.gene30726:CDS 40.0%
!! CTATTGGCTCTATAGCATAG+CGG + chr6.2:41849302-41849321 MS.gene30726:intron 40.0%
!!! CTTGGCTGATGCAGTTTTTT+TGG + chr6.2:41850662-41850681 MS.gene30726:CDS 40.0%
!!! GGACTTTAGTTTTAAGCCAC+AGG + chr6.2:41849002-41849021 MS.gene30726:CDS 40.0%
AACATGCCCTTCACAAATGG+TGG - chr6.2:41849791-41849810 None:intergenic 45.0%
AAGCCAGTAACGGTATCTGA+GGG + chr6.2:41848854-41848873 MS.gene30726:CDS 45.0%
AGTAACGGTATCTGAGGGAT+CGG + chr6.2:41848859-41848878 MS.gene30726:CDS 45.0%
ATAAGCAGCTTAGTCACTGC+AGG + chr6.2:41850594-41850613 MS.gene30726:CDS 45.0%
ATGGTTCTCTTCCTTGCAAG+AGG + chr6.2:41851005-41851024 MS.gene30726:CDS 45.0%
CGAAGTTCGAGAAGGGAAAA+TGG + chr6.2:41850949-41850968 MS.gene30726:CDS 45.0%
CTCTCAAAGTCATCCCTACA+AGG - chr6.2:41850567-41850586 None:intergenic 45.0%
CTTGTAGGGATGACTTTGAG+AGG + chr6.2:41850565-41850584 MS.gene30726:intron 45.0%
GATTCAAGAACGACACAACC+AGG - chr6.2:41849085-41849104 None:intergenic 45.0%
GCAGAAAATTGTAGGTACGG+CGG - chr6.2:41849586-41849605 None:intergenic 45.0%
GCAGTGTTGTCAATTGTGGA+AGG + chr6.2:41849432-41849451 MS.gene30726:intron 45.0%
GCTATCCCAGTTTCGTTATC+AGG + chr6.2:41850008-41850027 MS.gene30726:intron 45.0%
GGACATACGAAGTTCGAGAA+GGG + chr6.2:41850942-41850961 MS.gene30726:CDS 45.0%
GGATCACCGCAGAAAATTGT+AGG - chr6.2:41849594-41849613 None:intergenic 45.0%
GGCACTATAGTGCTATCACA+TGG + chr6.2:41849951-41849970 MS.gene30726:intron 45.0%
GGTCGGAATCAGAATTTGGT+GGG - chr6.2:41849625-41849644 None:intergenic 45.0%
GTCGTTCTTGAATCTGGTAC+TGG + chr6.2:41849091-41849110 MS.gene30726:CDS 45.0%
TCTGTTATGGCTAGACCATG+TGG + chr6.2:41851076-41851095 MS.gene30726:CDS 45.0%
TCTTGAAATTCTGGGTTCGC+GGG - chr6.2:41849533-41849552 None:intergenic 45.0%
TGGTCGGAATCAGAATTTGG+TGG - chr6.2:41849626-41849645 None:intergenic 45.0%
! ACAATTTTCTGCGGTGATCC+TGG + chr6.2:41849594-41849613 MS.gene30726:intron 45.0%
! AGAGGAAAATCGGGAAGTAC+CGG - chr6.2:41850817-41850836 None:intergenic 45.0%
! AGGGATGACTTTGAGAGGAT+TGG + chr6.2:41850570-41850589 MS.gene30726:intron 45.0%
! CGTATGATTTTGCTACCCCT+TGG - chr6.2:41849661-41849680 None:intergenic 45.0%
! CTTGAATCTGGTACTGGAAG+TGG + chr6.2:41849097-41849116 MS.gene30726:CDS 45.0%
! GAATCAGAATTTGGTGGGTG+CGG - chr6.2:41849620-41849639 None:intergenic 45.0%
! GCCGTACCTACAATTTTCTG+CGG + chr6.2:41849585-41849604 MS.gene30726:intron 45.0%
! GGTTGTGTCGTTCTTGAATC+TGG + chr6.2:41849085-41849104 MS.gene30726:CDS 45.0%
! GGTTTTCCTGAAGAGTTTGC+TGG + chr6.2:41850639-41850658 MS.gene30726:CDS 45.0%
! TTTGACTTCCTTGGCCATGA+CGG + chr6.2:41849703-41849722 MS.gene30726:intron 45.0%
!! TTTTTGGTGAAACTGGGTCC+TGG + chr6.2:41849501-41849520 MS.gene30726:intron 45.0%
!!! GATCGCGATTTTGACTTCCT+TGG + chr6.2:41849694-41849713 MS.gene30726:intron 45.0%
!!! GGACTTTTGAGGTACTCCTA+CGG + chr6.2:41850921-41850940 MS.gene30726:CDS 45.0%
AAATTCTGGGTTCGCGGGTT+GGG - chr6.2:41849528-41849547 None:intergenic 50.0%
ACCATACTCCAGCATGCCAA+GGG + chr6.2:41849642-41849661 MS.gene30726:intron 50.0%
AGACCATGTGGTGAAGCTAG+AGG + chr6.2:41851088-41851107 MS.gene30726:CDS 50.0%
AGTGAGGGACATTCAAGGTG+AGG + chr6.2:41850617-41850636 MS.gene30726:CDS 50.0%
CGGACATACGAAGTTCGAGA+AGG + chr6.2:41850941-41850960 MS.gene30726:CDS 50.0%
CTCGAACTTCGTATGTCCGT+AGG - chr6.2:41850940-41850959 None:intergenic 50.0%
CTTAGTCACTGCAGGAGTGA+GGG + chr6.2:41850602-41850621 MS.gene30726:CDS 50.0%
GAAGCCAGTAACGGTATCTG+AGG + chr6.2:41848853-41848872 MS.gene30726:CDS 50.0%
GATCCCTCAGATACCGTTAC+TGG - chr6.2:41848860-41848879 None:intergenic 50.0%
GATTTCCATGAGCATAGGGC+TGG + chr6.2:41849820-41849839 MS.gene30726:intron 50.0%
GCTGAAGGAATAGCTAGCCA+AGG - chr6.2:41850699-41850718 None:intergenic 50.0%
GGAATAGCTAGCCAAGGTTG+AGG - chr6.2:41850693-41850712 None:intergenic 50.0%
GTGAGGGACATTCAAGGTGA+GGG + chr6.2:41850618-41850637 MS.gene30726:CDS 50.0%
GTTCTCTTCCTTGCAAGAGG+AGG + chr6.2:41851008-41851027 MS.gene30726:CDS 50.0%
TTATGAAGGGATGCCCGTCA+TGG - chr6.2:41849720-41849739 None:intergenic 50.0%
TTGACTTCCTTGGCCATGAC+GGG + chr6.2:41849704-41849723 MS.gene30726:intron 50.0%
TTGGCATGCTGGAGTATGGT+CGG - chr6.2:41849642-41849661 None:intergenic 50.0%
! GACGGTAATGACGGCTCTAA+TGG + chr6.2:41850986-41851005 MS.gene30726:CDS 50.0%
! TGACCTCTAGCTTCACCACA+TGG - chr6.2:41851094-41851113 None:intergenic 50.0%
!! TCCTGAAGAGTTTGCTGGCT+TGG + chr6.2:41850644-41850663 MS.gene30726:CDS 50.0%
AAGAGGAGGCGACGTTCAGA+TGG + chr6.2:41851022-41851041 MS.gene30726:CDS 55.0%
ACCGTGGCCACCATTTGTGA+AGG + chr6.2:41849781-41849800 MS.gene30726:intron 55.0%
ACGAAACTGGGATAGCGCCA+CGG - chr6.2:41850004-41850023 None:intergenic 55.0%
ACGTTCAGATGGAGCTAGCG+TGG + chr6.2:41851033-41851052 MS.gene30726:CDS 55.0%
ATCTGCATGTGTGCCCAACG+TGG + chr6.2:41850122-41850141 MS.gene30726:intron 55.0%
CCATACTCCAGCATGCCAAG+GGG + chr6.2:41849643-41849662 MS.gene30726:intron 55.0%
CCCTTCACAAATGGTGGCCA+CGG - chr6.2:41849785-41849804 None:intergenic 55.0%
CCGTGGCCACCATTTGTGAA+GGG + chr6.2:41849782-41849801 MS.gene30726:intron 55.0%
CTGATCCAGCCCTATGCTCA+TGG - chr6.2:41849828-41849847 None:intergenic 55.0%
GAAATTCTGGGTTCGCGGGT+TGG - chr6.2:41849529-41849548 None:intergenic 55.0%
GACCATACTCCAGCATGCCA+AGG + chr6.2:41849641-41849660 MS.gene30726:intron 55.0%
GCAGGAGTGAGGGACATTCA+AGG + chr6.2:41850612-41850631 MS.gene30726:CDS 55.0%
GCCAAGCCAGCAAACTCTTC+AGG - chr6.2:41850648-41850667 None:intergenic 55.0%
GCTTAGTCACTGCAGGAGTG+AGG + chr6.2:41850601-41850620 MS.gene30726:CDS 55.0%
GGTGAAGCTAGAGGTCACAC+TGG + chr6.2:41851097-41851116 MS.gene30726:CDS 55.0%
TCTGCCTCACTATTCCACCG+TGG + chr6.2:41849765-41849784 MS.gene30726:intron 55.0%
TTCACAAATGGTGGCCACGG+TGG - chr6.2:41849782-41849801 None:intergenic 55.0%
TTTGCTACCCCTTGGCATGC+TGG - chr6.2:41849653-41849672 None:intergenic 55.0%
!! TCGGGAAGTACCGGTGAAGT+TGG - chr6.2:41850808-41850827 None:intergenic 55.0%
AGTCAGGTGCAGCACCTAGC+TGG - chr6.2:41849866-41849885 None:intergenic 60.0%
CCCCTTGGCATGCTGGAGTA+TGG - chr6.2:41849646-41849665 None:intergenic 60.0%
GAACGTCGCCTCCTCTTGCA+AGG - chr6.2:41851019-41851038 None:intergenic 60.0%
GCAAGGGCAGTTGCTCCTAC+AGG + chr6.2:41849139-41849158 MS.gene30726:CDS 60.0%
GTGGCCACGGTGGAATAGTG+AGG - chr6.2:41849772-41849791 None:intergenic 60.0%
! AGAATTTGGTGGGTGCGGCC+AGG - chr6.2:41849615-41849634 None:intergenic 60.0%
AGGGATGCCCGTCATGGCCA+AGG - chr6.2:41849714-41849733 None:intergenic 65.0%
!! TGGGTTCGCGGGTTGGGTCC+AGG - chr6.2:41849522-41849541 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 41848761 41851147 41848761 ID=MS.gene30726
chr6.2 mRNA 41848761 41851147 41848761 ID=MS.gene30726.t1;Parent=MS.gene30726
chr6.2 exon 41848761 41849209 41848761 ID=MS.gene30726.t1.exon1;Parent=MS.gene30726.t1
chr6.2 CDS 41848761 41849209 41848761 ID=cds.MS.gene30726.t1;Parent=MS.gene30726.t1
chr6.2 exon 41850572 41850816 41850572 ID=MS.gene30726.t1.exon2;Parent=MS.gene30726.t1
chr6.2 CDS 41850572 41850816 41850572 ID=cds.MS.gene30726.t1;Parent=MS.gene30726.t1
chr6.2 exon 41850915 41851147 41850915 ID=MS.gene30726.t1.exon3;Parent=MS.gene30726.t1
chr6.2 CDS 41850915 41851147 41850915 ID=cds.MS.gene30726.t1;Parent=MS.gene30726.t1
Gene Sequence

>MS.gene30726

ATGTTGGCTATCGATTCCACAAGAAAGATATCATTTAATAGAACAATTAGTAACGGTGATTTGGCAATTGTTTATGAAAGGCATGACAACATGAAGCCAGTAACGGTATCTGAGGGATCGGTTTTACAGAATCGATTCGGTGTTTTTAAACATTCAGATTGGATAGGAAAGTCATTTGGGTCTAAAGTATTCAACAATAAGGGCGGTTTTGTTTACTTATTAGCTCCTACTCCTGAATTATGGACTTTAGTTTTAAGCCACAGGACACAGATTCTATATATTGCAGATATCAGCTTTGTTGTTATGTATTTGGAGATTGTTCCTGGTTGTGTCGTTCTTGAATCTGGTACTGGAAGTGGGTCTTTAACTACTTCACTTGCAAGGGCAGTTGCTCCTACAGGACATGTTTATACGTTTGATTTTCACGAACAAAGATCTGGATCAGCTAGGTAATACTGCACTTGTCTTTCTCTGACGATATTTGATATACATGTGCTTATCTTTAGGCAATGTTGTATGTGTTATTTTCTAGTGTTGTCAACTATTGGCTCTATAGCATAGCGGATTTTGATGAATCCGCTAAAAAAACGGCAACACTATCATAGTTTAGCCGTTATTCTAGTTTTTTGGTAGTTGATGTAGCAACAATAGCAGAAAAAAGAGACTTTTAGGCAGTGTTGTCAATTGTGGAAGGCTAAAAATCTGTCATATAAACACGCCATTACCGCCTAAAAAACGTATTTTTGGTGAAACTGGGTCCTGGACCCAACCCGCGAACCCAGAATTTCAAGAAAGATAACTGAATCAATGAATTGCAAGATTCCGCCGTACCTACAATTTTCTGCGGTGATCCTGGCCGCACCCACCAAATTCTGATTCCGACCATACTCCAGCATGCCAAGGGGTAGCAAAATCATACGATCCCGTGAGTTTGATCGCGATTTTGACTTCCTTGGCCATGACGGGCATCCCTTCATAAATTTGCTATGGCGGGCGTAAAAAAATCTGCCTCACTATTCCACCGTGGCCACCATTTGTGAAGGGCATGTTTATACATTTGATTTCCATGAGCATAGGGCTGGATCAGCTATGTAATACTACACCAGCTAGGTGCTGCACCTGACTTCCTCTATTGTTTGATACATGTGTGTTTATCTATAGCAAATGTCGAGAATGATTTTTTCAATAGCGGCACTATAGTGCTATCACATGGTGGATTTTGATGAGTCTACTATGAAAACCGTGGCGCTATCCCAGTTTCGTTATCAGGACAGTAGCGGCTGCTCTTAAATTTTTGCTGGCTGATATACGAACTTTATTGGGAATTTTTTTCATTTTTTTTTAAAATAATAAAATTGAAGATCTGCATGTGTGCCCAACGTGGCTTATTTTTACAATGGAAAAACTTAGGAGTCAGTGAATATTACTCCTGTATTCACCGTAATACAATATATAAGTTATGTTCTACTTCCATTCCCTTTTTATTTGCATGCAGGGTGCCTTGTTTTATATATAATTGACTTATTTCAACTGTTATGCGGTTTCTGCTATTTGCCCGAAACACTATCTTCTATTTCACATAGCGGATTTTCCGTAATATGCTATTGATGACACTTTCATGGCTTTGCATTATATTATGTTCTCTTTCTCTAGTAATTGCAAGTAATATTATTGGTGATCTAATACCCTACTGTTCAGAATGTCAATGCTCAAGTTCAGATTTATTTAACTGTACTCAATGCGGTGATAAACTTGAGATGTTCAGTGTAAAGGTAAATTACAAATATGTATACTTGTTTTTCTCCTTGTAGGGATGACTTTGAGAGGATTGGCATAAGCAGCTTAGTCACTGCAGGAGTGAGGGACATTCAAGGTGAGGGTTTTCCTGAAGAGTTTGCTGGCTTGGCTGATGCAGTTTTTTTGGATCTACCTCAACCTTGGCTAGCTATTCCTTCAGCTGCAAAAATGTTACGATATGACGGCACTTTATGTTCTTTCTCCCCGTGTATTGAACAAGTACAACGATCATGTGAAACAATGCAATCCAACTTCACCGGTACTTCCCGATTTTCCTCTTTTATATGTTATGCAACTAATGATAATTTTATTTACGCACTTACAAAAGTCCTTTGTATATGTTTGTTTATGTGAAAGATATAAGGACTTTTGAGGTACTCCTACGGACATACGAAGTTCGAGAAGGGAAAATGGAAAGCTCTGAGATTGACGGTAATGACGGCTCTAATGGTTCTCTTCCTTGCAAGAGGAGGCGACGTTCAGATGGAGCTAGCGTGGTGAGCTATTCTAATTCTTCTTCTGTTATGGCTAGACCATGTGGTGAAGCTAGAGGTCACACTGGTTATTTGACATTTGCAAGACTTAATTAA
Protein sequence

>MS.gene30726.t1

MLAIDSTRKISFNRTISNGDLAIVYERHDNMKPVTVSEGSVLQNRFGVFKHSDWIGKSFGSKVFNNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRSGSARDDFERIGISSLVTAGVRDIQGEGFPEEFAGLADAVFLDLPQPWLAIPSAAKMLRYDGTLCSFSPCIEQVQRSCETMQSNFTDIRTFEVLLRTYEVREGKMESSEIDGNDGSNGSLPCKRRRRSDGASVVSYSNSSSVMARPCGEARGHTGYLTFARLN