Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30808.t1 | RHN51901.1 | 96.4 | 631 | 20 | 1 | 1 | 631 | 1 | 628 | 0.00E+00 | 1213 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30808.t1 | Q655R6 | 20.7 | 600 | 318 | 19 | 69 | 614 | 4 | 499 | 1.0e-10 | 70.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30808.t1 | A0A396HH98 | 96.4 | 631 | 20 | 1 | 1 | 631 | 1 | 628 | 0.0e+00 | 1213.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene30808 | 0.807456 | 5.01E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene30808 | 0.801723 | 7.87E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene30808 | -0.813656 | 2.29E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene30808 | 0.822921 | 1.83E-53 | -1.69E-46 |
| MS.gene051831 | MS.gene30808 | 0.830059 | 3.63E-55 | -1.69E-46 |
| MS.gene052420 | MS.gene30808 | 0.800694 | 1.28E-48 | -1.69E-46 |
| MS.gene052746 | MS.gene30808 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene30808 | 0.810451 | 1.15E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene30808 | 0.824572 | 7.51E-54 | -1.69E-46 |
| MS.gene056830 | MS.gene30808 | -0.821876 | 3.20E-53 | -1.69E-46 |
| MS.gene056849 | MS.gene30808 | 0.820786 | 5.71E-53 | -1.69E-46 |
| MS.gene056975 | MS.gene30808 | 0.83537 | 1.75E-56 | -1.69E-46 |
| MS.gene05761 | MS.gene30808 | 0.826006 | 3.44E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene30808 | 0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene30808 | 0.814492 | 1.50E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene30808 | 0.809721 | 1.64E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene30808 | 0.806512 | 7.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30808.t1 | MTR_6g464840 | 96.197 | 631 | 21 | 1 | 1 | 631 | 1 | 628 | 0.0 | 1227 |
| MS.gene30808.t1 | MTR_6g089580 | 96.038 | 631 | 22 | 1 | 1 | 631 | 1 | 628 | 0.0 | 1226 |
| MS.gene30808.t1 | MTR_1g101790 | 67.273 | 660 | 164 | 14 | 6 | 631 | 2 | 643 | 0.0 | 848 |
| MS.gene30808.t1 | MTR_1g101790 | 66.872 | 649 | 163 | 14 | 6 | 620 | 2 | 632 | 0.0 | 825 |
| MS.gene30808.t1 | MTR_4g102620 | 48.457 | 648 | 275 | 15 | 5 | 631 | 6 | 615 | 0.0 | 576 |
| MS.gene30808.t1 | MTR_8g079020 | 44.675 | 338 | 156 | 6 | 43 | 374 | 88 | 400 | 4.01e-84 | 283 |
| MS.gene30808.t1 | MTR_8g079020 | 43.860 | 171 | 82 | 3 | 458 | 614 | 755 | 925 | 7.03e-34 | 138 |
| MS.gene30808.t1 | MTR_8g079040 | 45.625 | 320 | 145 | 5 | 61 | 374 | 104 | 400 | 4.19e-84 | 283 |
| MS.gene30808.t1 | MTR_8g079040 | 45.614 | 171 | 79 | 4 | 458 | 614 | 751 | 921 | 6.22e-36 | 145 |
| MS.gene30808.t1 | MTR_3g099200 | 29.146 | 199 | 122 | 7 | 175 | 366 | 134 | 320 | 2.13e-16 | 81.3 |
| MS.gene30808.t1 | MTR_3g099200 | 29.146 | 199 | 122 | 7 | 175 | 366 | 181 | 367 | 2.42e-16 | 81.6 |
| MS.gene30808.t1 | MTR_4g104060 | 28.022 | 182 | 119 | 6 | 175 | 356 | 172 | 341 | 2.17e-14 | 75.5 |
| MS.gene30808.t1 | MTR_4g104060 | 28.022 | 182 | 119 | 6 | 175 | 356 | 158 | 327 | 2.24e-14 | 75.5 |
| MS.gene30808.t1 | MTR_4g030930 | 26.761 | 213 | 118 | 8 | 179 | 361 | 34 | 238 | 2.65e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30808.t1 | AT5G51920 | 50.326 | 614 | 228 | 10 | 13 | 620 | 14 | 556 | 0.0 | 587 |
| MS.gene30808.t1 | AT4G22980 | 39.968 | 633 | 285 | 16 | 7 | 626 | 7 | 557 | 9.48e-137 | 411 |
| MS.gene30808.t1 | AT5G66950 | 45.858 | 338 | 153 | 6 | 43 | 374 | 86 | 399 | 3.41e-88 | 293 |
| MS.gene30808.t1 | AT5G66950 | 45.714 | 175 | 90 | 2 | 447 | 616 | 681 | 855 | 9.73e-38 | 150 |
| MS.gene30808.t1 | AT4G37100 | 46.057 | 317 | 143 | 5 | 65 | 374 | 110 | 405 | 5.77e-86 | 288 |
| MS.gene30808.t1 | AT4G37100 | 43.333 | 180 | 92 | 4 | 444 | 613 | 696 | 875 | 3.49e-35 | 142 |
| MS.gene30808.t1 | AT2G23520 | 42.604 | 338 | 164 | 6 | 43 | 374 | 88 | 401 | 8.88e-84 | 281 |
| MS.gene30808.t1 | AT2G23520 | 37.349 | 249 | 116 | 8 | 384 | 613 | 649 | 876 | 3.54e-33 | 136 |
| MS.gene30808.t1 | AT1G16540 | 25.312 | 320 | 172 | 11 | 76 | 361 | 7 | 293 | 1.43e-16 | 84.0 |
| MS.gene30808.t1 | AT1G16540 | 25.312 | 320 | 172 | 11 | 76 | 361 | 7 | 293 | 1.74e-16 | 84.0 |
| MS.gene30808.t1 | AT1G16540 | 25.312 | 320 | 172 | 11 | 76 | 361 | 7 | 293 | 2.53e-16 | 83.6 |
Find 79 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGTGCTACGTCGATTT+TGG | 0.163564 | 6.4:+38816542 | MS.gene30808:CDS |
| TTAAAAGCTTTCTACTCTTT+TGG | 0.183875 | 6.4:-38816125 | None:intergenic |
| GAGCAAGATATCCTTATATT+TGG | 0.191107 | 6.4:+38816349 | MS.gene30808:CDS |
| CTTCCACCGCTTCGCTTTCA+TGG | 0.238873 | 6.4:-38816158 | None:intergenic |
| CATACTTGTCTTGATTATAT+TGG | 0.264072 | 6.4:+38815799 | MS.gene30808:CDS |
| ATGGATTGTTGCATCATATA+TGG | 0.266349 | 6.4:+38817129 | MS.gene30808:CDS |
| CCTCTATCAAATTTAACTTT+TGG | 0.267902 | 6.4:-38817008 | None:intergenic |
| GCTATACTTATCCAAATATA+AGG | 0.271173 | 6.4:-38816360 | None:intergenic |
| TGGTTTGTGAAATGAGTATT+TGG | 0.280089 | 6.4:-38815652 | None:intergenic |
| TTGAAGATATCTATAATCTT+TGG | 0.287935 | 6.4:+38817267 | MS.gene30808:CDS |
| ATGTTTGTGAGGTTTCATTT+TGG | 0.288464 | 6.4:-38815498 | None:intergenic |
| GGAGAAAACCCTTCTGGATT+TGG | 0.290344 | 6.4:+38816504 | MS.gene30808:CDS |
| CCTCTTCATTCAAGAGTAAC+AGG | 0.291445 | 6.4:+38816327 | MS.gene30808:CDS |
| CCAAAAGACATGGATTGTTT+TGG | 0.301962 | 6.4:+38816429 | MS.gene30808:CDS |
| CCAAAACAATCCATGTCTTT+TGG | 0.304344 | 6.4:-38816429 | None:intergenic |
| GTATCTCTAGTGAAGATTTA+TGG | 0.311118 | 6.4:+38816984 | MS.gene30808:CDS |
| GTGCGAGGTACTTGATTAAC+TGG | 0.317575 | 6.4:+38816916 | MS.gene30808:CDS |
| GATGAACTGTTTCTGTGTTT+TGG | 0.319963 | 6.4:-38815583 | None:intergenic |
| TTGAAGACTTTGCTTCTTCA+TGG | 0.320259 | 6.4:+38815964 | MS.gene30808:CDS |
| ACTGTTGTTACTGCTGCATT+AGG | 0.320994 | 6.4:+38817230 | MS.gene30808:CDS |
| GACAAAGATGTCATATAAAA+TGG | 0.322067 | 6.4:-38816654 | None:intergenic |
| TTGGTTGATGCATGTGCATT+AGG | 0.335994 | 6.4:+38816405 | MS.gene30808:CDS |
| TGTCTTGATTATATTGGTAT+TGG | 0.348868 | 6.4:+38815805 | MS.gene30808:CDS |
| TGCGAAAGTGCGACGACATT+CGG | 0.349970 | 6.4:-38815605 | None:intergenic |
| AGAGATACCCCTTCGGAGTT+AGG | 0.363465 | 6.4:-38816969 | None:intergenic |
| AGAGAATGGTTGGAATGTTT+TGG | 0.364542 | 6.4:+38816386 | MS.gene30808:CDS |
| TTTAGTATATCCTGCAAAAC+AGG | 0.365144 | 6.4:+38815937 | MS.gene30808:CDS |
| TTGCATTCAATATATTTGAT+TGG | 0.365335 | 6.4:+38817039 | MS.gene30808:CDS |
| AGAAAACTGTTGAAGTTTAA+CGG | 0.366475 | 6.4:+38817360 | MS.gene30808:CDS |
| TCTCCTTCTACGAAATTTGC+AGG | 0.369064 | 6.4:-38816699 | None:intergenic |
| TTAGATCAAGTGGATTCATT+AGG | 0.372557 | 6.4:+38816873 | MS.gene30808:CDS |
| GCAAGTTCAAATCGATGAAA+AGG | 0.379374 | 6.4:+38816800 | MS.gene30808:CDS |
| ATCGGAAAACGATTACTTCA+TGG | 0.389650 | 6.4:+38816047 | MS.gene30808:CDS |
| CAAGAACAAATAAGAAAATC+TGG | 0.394646 | 6.4:-38816468 | None:intergenic |
| AATATATTGAATGCAATTGC+AGG | 0.415602 | 6.4:-38817032 | None:intergenic |
| AGCAATATTTCTATTAGCTA+TGG | 0.416931 | 6.4:+38817110 | MS.gene30808:CDS |
| CCAAAAGTTAAATTTGATAG+AGG | 0.423139 | 6.4:+38817008 | MS.gene30808:CDS |
| TTGAATGATTCTTGAAATGA+TGG | 0.425269 | 6.4:-38815685 | None:intergenic |
| CAACCTGCAAATTTCGTAGA+AGG | 0.429244 | 6.4:+38816696 | MS.gene30808:CDS |
| TTCTTCTTCATCTAAATGTA+AGG | 0.434934 | 6.4:-38816631 | None:intergenic |
| AGATAAGTATGCCGATGAAA+AGG | 0.438948 | 6.4:+38817157 | MS.gene30808:CDS |
| CATGAATTACCTTAACATAT+CGG | 0.439358 | 6.4:+38816029 | MS.gene30808:CDS |
| ATCTGAAATTTGTGAAATTG+AGG | 0.449128 | 6.4:+38816767 | MS.gene30808:CDS |
| GGAAGCGATGATTAGTTCTT+CGG | 0.461033 | 6.4:+38816176 | MS.gene30808:CDS |
| GAAATGATGGAAGAGATTCA+TGG | 0.463690 | 6.4:-38815672 | None:intergenic |
| TTGGAAACAAATTCTTCTGT+AGG | 0.464329 | 6.4:+38816561 | MS.gene30808:CDS |
| TTCAATATATTTGATTGGAA+AGG | 0.488166 | 6.4:+38817044 | MS.gene30808:CDS |
| GTATAGCGAAAGAGAATGGT+TGG | 0.497937 | 6.4:+38816376 | MS.gene30808:CDS |
| GATAAGTATGCCGATGAAAA+GGG | 0.499232 | 6.4:+38817158 | MS.gene30808:CDS |
| TTTGCTGTATCAGAATATTG+AGG | 0.501401 | 6.4:-38815727 | None:intergenic |
| CAAGTTCAAATCGATGAAAA+GGG | 0.520584 | 6.4:+38816801 | MS.gene30808:CDS |
| GAATTCAGTCAACAAAATTG+AGG | 0.533657 | 6.4:+38816250 | MS.gene30808:CDS |
| TCAATTTCACAAATTTCAGA+TGG | 0.534494 | 6.4:-38816765 | None:intergenic |
| GTTGACTGAATTCTCAACCT+TGG | 0.534849 | 6.4:-38816240 | None:intergenic |
| AAAACTTTGATATTGAATGT+AGG | 0.544123 | 6.4:+38816847 | MS.gene30808:CDS |
| ATGTAGGTGCTTAGATCAAG+TGG | 0.549169 | 6.4:+38816863 | MS.gene30808:CDS |
| ATAAGTATAGCGAAAGAGAA+TGG | 0.550020 | 6.4:+38816372 | MS.gene30808:CDS |
| AATTTGTGAAATTGAGGAGG+TGG | 0.569049 | 6.4:+38816773 | MS.gene30808:CDS |
| CCTGTTACTCTTGAATGAAG+AGG | 0.573904 | 6.4:-38816327 | None:intergenic |
| AAGACTTTGCTTCTTCATGG+TGG | 0.585075 | 6.4:+38815967 | MS.gene30808:CDS |
| TTAAGCATCCTAACTCCGAA+GGG | 0.587179 | 6.4:+38816961 | MS.gene30808:CDS |
| CTTAAGCATCCTAACTCCGA+AGG | 0.590433 | 6.4:+38816960 | MS.gene30808:CDS |
| TGACCATGAAAGCGAAGCGG+TGG | 0.596891 | 6.4:+38816155 | MS.gene30808:CDS |
| AACGGCATATCGGAAAATTG+AGG | 0.597999 | 6.4:-38815913 | None:intergenic |
| AAAAGGCAACCAAATCCAGA+AGG | 0.598988 | 6.4:-38816513 | None:intergenic |
| CTTCACTAGAGATACCCCTT+CGG | 0.603042 | 6.4:-38816976 | None:intergenic |
| GAGGTACTTGATTAACTGGT+TGG | 0.612614 | 6.4:+38816920 | MS.gene30808:CDS |
| GTCTGAGATGAAAATTGTAG+AGG | 0.625413 | 6.4:+38816725 | MS.gene30808:CDS |
| CATTGCAACAACATTGATGA+GGG | 0.634621 | 6.4:-38815522 | None:intergenic |
| TGCATTAGGACCAAAAGACA+TGG | 0.636735 | 6.4:+38816419 | MS.gene30808:CDS |
| ACATTGCAACAACATTGATG+AGG | 0.642037 | 6.4:-38815523 | None:intergenic |
| TGAAATTTGTGAAATTGAGG+AGG | 0.643306 | 6.4:+38816770 | MS.gene30808:CDS |
| TTTCACAGCGAATAGAACAT+CGG | 0.643774 | 6.4:+38816071 | MS.gene30808:CDS |
| AAAGGCAACCAAATCCAGAA+GGG | 0.648687 | 6.4:-38816512 | None:intergenic |
| TTGATGAGGGCATGTTTGTG+AGG | 0.661881 | 6.4:-38815509 | None:intergenic |
| TACTGATCAATGATCGTGCG+AGG | 0.670329 | 6.4:+38816901 | MS.gene30808:CDS |
| AAGGTAAGTATTGAAACTTG+CGG | 0.699855 | 6.4:-38816612 | None:intergenic |
| TAAGCATCCTAACTCCGAAG+GGG | 0.700579 | 6.4:+38816962 | MS.gene30808:CDS |
| TTATGACCATGAAAGCGAAG+CGG | 0.729811 | 6.4:+38816152 | MS.gene30808:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTTGATATTGAATGT+AGG | + | chr6.4:38816847-38816866 | MS.gene30808:CDS | 20.0% |
| !! | AAGAAAGATAAAGAAAAAGT+TGG | + | chr6.4:38817203-38817222 | MS.gene30808:CDS | 20.0% |
| !! | AGAAAGAAGAAGAAAAATAA+GGG | + | chr6.4:38816291-38816310 | MS.gene30808:CDS | 20.0% |
| !! | TTCAATATATTTGATTGGAA+AGG | + | chr6.4:38817044-38817063 | MS.gene30808:CDS | 20.0% |
| !! | TTGAAGATATCTATAATCTT+TGG | + | chr6.4:38817267-38817286 | MS.gene30808:CDS | 20.0% |
| !! | TTGCATTCAATATATTTGAT+TGG | + | chr6.4:38817039-38817058 | MS.gene30808:CDS | 20.0% |
| !!! | TGTTCTTGTTATAAAGTTTT+CGG | + | chr6.4:38816483-38816502 | MS.gene30808:CDS | 20.0% |
| ! | AATATATTGAATGCAATTGC+AGG | - | chr6.4:38817035-38817054 | None:intergenic | 25.0% |
| ! | CAAGAACAAATAAGAAAATC+TGG | - | chr6.4:38816471-38816490 | None:intergenic | 25.0% |
| ! | CATACTTGTCTTGATTATAT+TGG | + | chr6.4:38815799-38815818 | MS.gene30808:CDS | 25.0% |
| ! | CATGAATTACCTTAACATAT+CGG | + | chr6.4:38816029-38816048 | MS.gene30808:CDS | 25.0% |
| ! | CCAAAAGTTAAATTTGATAG+AGG | + | chr6.4:38817008-38817027 | MS.gene30808:CDS | 25.0% |
| ! | GACAAAGATGTCATATAAAA+TGG | - | chr6.4:38816657-38816676 | None:intergenic | 25.0% |
| ! | GAGAAAGAAGAAGAAAAATA+AGG | + | chr6.4:38816290-38816309 | MS.gene30808:CDS | 25.0% |
| ! | GCTATACTTATCCAAATATA+AGG | - | chr6.4:38816363-38816382 | None:intergenic | 25.0% |
| ! | TATACTAAAAAACGGCATAT+CGG | - | chr6.4:38815926-38815945 | None:intergenic | 25.0% |
| ! | TCAATTTCACAAATTTCAGA+TGG | - | chr6.4:38816768-38816787 | None:intergenic | 25.0% |
| ! | TGTCTTGATTATATTGGTAT+TGG | + | chr6.4:38815805-38815824 | MS.gene30808:CDS | 25.0% |
| ! | TTCTTCTTCATCTAAATGTA+AGG | - | chr6.4:38816634-38816653 | None:intergenic | 25.0% |
| ! | TTGAATGATTCTTGAAATGA+TGG | - | chr6.4:38815688-38815707 | None:intergenic | 25.0% |
| ! | TTGCAGGATATACTAAAAAA+CGG | - | chr6.4:38815934-38815953 | None:intergenic | 25.0% |
| !! | AGCAATATTTCTATTAGCTA+TGG | + | chr6.4:38817110-38817129 | MS.gene30808:CDS | 25.0% |
| !! | ATCTGAAATTTGTGAAATTG+AGG | + | chr6.4:38816767-38816786 | MS.gene30808:CDS | 25.0% |
| !! | TAGCACTTTTCTTGATAAAA+AGG | - | chr6.4:38816533-38816552 | None:intergenic | 25.0% |
| !! | TTAAAAGCTTTCTACTCTTT+TGG | - | chr6.4:38816128-38816147 | None:intergenic | 25.0% |
| !!! | CCTCTATCAAATTTAACTTT+TGG | - | chr6.4:38817011-38817030 | None:intergenic | 25.0% |
| ATAAGTATAGCGAAAGAGAA+TGG | + | chr6.4:38816372-38816391 | MS.gene30808:CDS | 30.0% | |
| CAAGTTCAAATCGATGAAAA+GGG | + | chr6.4:38816801-38816820 | MS.gene30808:CDS | 30.0% | |
| GAATTCAGTCAACAAAATTG+AGG | + | chr6.4:38816250-38816269 | MS.gene30808:CDS | 30.0% | |
| GAGCAAGATATCCTTATATT+TGG | + | chr6.4:38816349-38816368 | MS.gene30808:CDS | 30.0% | |
| GTATCTCTAGTGAAGATTTA+TGG | + | chr6.4:38816984-38817003 | MS.gene30808:CDS | 30.0% | |
| TGAAATTTGTGAAATTGAGG+AGG | + | chr6.4:38816770-38816789 | MS.gene30808:CDS | 30.0% | |
| TTGGAAACAAATTCTTCTGT+AGG | + | chr6.4:38816561-38816580 | MS.gene30808:CDS | 30.0% | |
| TTTAGTATATCCTGCAAAAC+AGG | + | chr6.4:38815937-38815956 | MS.gene30808:CDS | 30.0% | |
| ! | AATCGTTTTCCGATATGTTA+AGG | - | chr6.4:38816041-38816060 | None:intergenic | 30.0% |
| ! | ATGGATTGTTGCATCATATA+TGG | + | chr6.4:38817129-38817148 | MS.gene30808:CDS | 30.0% |
| ! | ATGTTTGTGAGGTTTCATTT+TGG | - | chr6.4:38815501-38815520 | None:intergenic | 30.0% |
| ! | TGGTTTGTGAAATGAGTATT+TGG | - | chr6.4:38815655-38815674 | None:intergenic | 30.0% |
| ! | TTAGATCAAGTGGATTCATT+AGG | + | chr6.4:38816873-38816892 | MS.gene30808:CDS | 30.0% |
| ! | TTTGCTGTATCAGAATATTG+AGG | - | chr6.4:38815730-38815749 | None:intergenic | 30.0% |
| !! | AAGGTAAGTATTGAAACTTG+CGG | - | chr6.4:38816615-38816634 | None:intergenic | 30.0% |
| !! | GGTTTTGTGTTTTGTGAATT+TGG | - | chr6.4:38815565-38815584 | None:intergenic | 30.0% |
| AATTTGTGAAATTGAGGAGG+TGG | + | chr6.4:38816773-38816792 | MS.gene30808:CDS | 35.0% | |
| ACATTGCAACAACATTGATG+AGG | - | chr6.4:38815526-38815545 | None:intergenic | 35.0% | |
| AGATAAGTATGCCGATGAAA+AGG | + | chr6.4:38817157-38817176 | MS.gene30808:CDS | 35.0% | |
| ATCGGAAAACGATTACTTCA+TGG | + | chr6.4:38816047-38816066 | MS.gene30808:CDS | 35.0% | |
| CATTGCAACAACATTGATGA+GGG | - | chr6.4:38815525-38815544 | None:intergenic | 35.0% | |
| GATAAGTATGCCGATGAAAA+GGG | + | chr6.4:38817158-38817177 | MS.gene30808:CDS | 35.0% | |
| GCAAGTTCAAATCGATGAAA+AGG | + | chr6.4:38816800-38816819 | MS.gene30808:CDS | 35.0% | |
| TTGAAGACTTTGCTTCTTCA+TGG | + | chr6.4:38815964-38815983 | MS.gene30808:CDS | 35.0% | |
| TTTCACAGCGAATAGAACAT+CGG | + | chr6.4:38816071-38816090 | MS.gene30808:CDS | 35.0% | |
| ! | AGAGAATGGTTGGAATGTTT+TGG | + | chr6.4:38816386-38816405 | MS.gene30808:CDS | 35.0% |
| ! | ATTAGTTCTTCGGAAAAACG+AGG | + | chr6.4:38816186-38816205 | MS.gene30808:CDS | 35.0% |
| ! | CCAAAACAATCCATGTCTTT+TGG | - | chr6.4:38816432-38816451 | None:intergenic | 35.0% |
| ! | CTTCAAATTTCCTGTTTTGC+AGG | - | chr6.4:38815950-38815969 | None:intergenic | 35.0% |
| ! | GAAATGATGGAAGAGATTCA+TGG | - | chr6.4:38815675-38815694 | None:intergenic | 35.0% |
| ! | GTCTGAGATGAAAATTGTAG+AGG | + | chr6.4:38816725-38816744 | MS.gene30808:CDS | 35.0% |
| ! | TAGTACTCTTCCCTTTTCAT+CGG | - | chr6.4:38817171-38817190 | None:intergenic | 35.0% |
| !! | CCAAAAGACATGGATTGTTT+TGG | + | chr6.4:38816429-38816448 | MS.gene30808:CDS | 35.0% |
| !!! | GATGAACTGTTTCTGTGTTT+TGG | - | chr6.4:38815586-38815605 | None:intergenic | 35.0% |
| !!! | TACTGCTGCATTAGGTTTTT+TGG | + | chr6.4:38817238-38817257 | MS.gene30808:CDS | 35.0% |
| AAAAGGCAACCAAATCCAGA+AGG | - | chr6.4:38816516-38816535 | None:intergenic | 40.0% | |
| AAAGGCAACCAAATCCAGAA+GGG | - | chr6.4:38816515-38816534 | None:intergenic | 40.0% | |
| AACGGCATATCGGAAAATTG+AGG | - | chr6.4:38815916-38815935 | None:intergenic | 40.0% | |
| AAGACTTTGCTTCTTCATGG+TGG | + | chr6.4:38815967-38815986 | MS.gene30808:CDS | 40.0% | |
| ACTGTTGTTACTGCTGCATT+AGG | + | chr6.4:38817230-38817249 | MS.gene30808:CDS | 40.0% | |
| ATGTAGGTGCTTAGATCAAG+TGG | + | chr6.4:38816863-38816882 | MS.gene30808:CDS | 40.0% | |
| CAACCTGCAAATTTCGTAGA+AGG | + | chr6.4:38816696-38816715 | MS.gene30808:CDS | 40.0% | |
| CCTCTTCATTCAAGAGTAAC+AGG | + | chr6.4:38816327-38816346 | MS.gene30808:CDS | 40.0% | |
| CCTGTTACTCTTGAATGAAG+AGG | - | chr6.4:38816330-38816349 | None:intergenic | 40.0% | |
| GTATAGCGAAAGAGAATGGT+TGG | + | chr6.4:38816376-38816395 | MS.gene30808:CDS | 40.0% | |
| GTTGACTGAATTCTCAACCT+TGG | - | chr6.4:38816243-38816262 | None:intergenic | 40.0% | |
| TCTCCTTCTACGAAATTTGC+AGG | - | chr6.4:38816702-38816721 | None:intergenic | 40.0% | |
| TGCATTAGGACCAAAAGACA+TGG | + | chr6.4:38816419-38816438 | MS.gene30808:CDS | 40.0% | |
| TTAAGCATCCTAACTCCGAA+GGG | + | chr6.4:38816961-38816980 | MS.gene30808:CDS | 40.0% | |
| TTATGACCATGAAAGCGAAG+CGG | + | chr6.4:38816152-38816171 | MS.gene30808:CDS | 40.0% | |
| ! | CTATGTCAGCAGAGTTTTCA+TGG | + | chr6.4:38816217-38816236 | MS.gene30808:CDS | 40.0% |
| ! | GAGGTACTTGATTAACTGGT+TGG | + | chr6.4:38816920-38816939 | MS.gene30808:CDS | 40.0% |
| ! | GGAAGCGATGATTAGTTCTT+CGG | + | chr6.4:38816176-38816195 | MS.gene30808:CDS | 40.0% |
| ! | TTGGTTGATGCATGTGCATT+AGG | + | chr6.4:38816405-38816424 | MS.gene30808:CDS | 40.0% |
| !!! | ATCTTTGGTGTTTTGTTGCG+AGG | + | chr6.4:38817282-38817301 | MS.gene30808:CDS | 40.0% |
| !!! | GAAAAGTGCTACGTCGATTT+TGG | + | chr6.4:38816542-38816561 | MS.gene30808:CDS | 40.0% |
| !!! | GTGAGGTTTCATTTTGGCTA+AGG | - | chr6.4:38815495-38815514 | None:intergenic | 40.0% |
| !!! | TCAGATGGTTTTGACACACT+TGG | - | chr6.4:38816753-38816772 | None:intergenic | 40.0% |
| !!! | TGATGCTGATTTTGTCGAGA+AGG | + | chr6.4:38817310-38817329 | MS.gene30808:CDS | 40.0% |
| CTTAAGCATCCTAACTCCGA+AGG | + | chr6.4:38816960-38816979 | MS.gene30808:CDS | 45.0% | |
| CTTCACTAGAGATACCCCTT+CGG | - | chr6.4:38816979-38816998 | None:intergenic | 45.0% | |
| GGAGAAAACCCTTCTGGATT+TGG | + | chr6.4:38816504-38816523 | MS.gene30808:CDS | 45.0% | |
| TAAGCATCCTAACTCCGAAG+GGG | + | chr6.4:38816962-38816981 | MS.gene30808:CDS | 45.0% | |
| TACTGATCAATGATCGTGCG+AGG | + | chr6.4:38816901-38816920 | MS.gene30808:CDS | 45.0% | |
| ! | ATTTTGTCGAGAAGGAGAGG+TGG | + | chr6.4:38817318-38817337 | MS.gene30808:CDS | 45.0% |
| ! | CTGATTTTGTCGAGAAGGAG+AGG | + | chr6.4:38817315-38817334 | MS.gene30808:CDS | 45.0% |
| ! | GTGCGAGGTACTTGATTAAC+TGG | + | chr6.4:38816916-38816935 | MS.gene30808:CDS | 45.0% |
| ! | GTTTTCGGAGAAAACCCTTC+TGG | + | chr6.4:38816498-38816517 | MS.gene30808:CDS | 45.0% |
| ! | TTGATGAGGGCATGTTTGTG+AGG | - | chr6.4:38815512-38815531 | None:intergenic | 45.0% |
| !!! | GCGGCTTTTTTTCTTGCACA+AGG | - | chr6.4:38816596-38816615 | None:intergenic | 45.0% |
| AGAGATACCCCTTCGGAGTT+AGG | - | chr6.4:38816972-38816991 | None:intergenic | 50.0% | |
| ! | CAGCAGAGTTTTCATGGCCA+AGG | + | chr6.4:38816223-38816242 | MS.gene30808:CDS | 50.0% |
| ! | GCGAGTTTTTGCACGAGAAC+AGG | - | chr6.4:38817083-38817102 | None:intergenic | 50.0% |
| ! | TGCGAAAGTGCGACGACATT+CGG | - | chr6.4:38815608-38815627 | None:intergenic | 50.0% |
| CTTCCACCGCTTCGCTTTCA+TGG | - | chr6.4:38816161-38816180 | None:intergenic | 55.0% | |
| TGACCATGAAAGCGAAGCGG+TGG | + | chr6.4:38816155-38816174 | MS.gene30808:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 38815484 | 38817379 | 38815484 | ID=MS.gene30808 |
| chr6.4 | mRNA | 38815484 | 38817379 | 38815484 | ID=MS.gene30808.t1;Parent=MS.gene30808 |
| chr6.4 | exon | 38815484 | 38817379 | 38815484 | ID=MS.gene30808.t1.exon1;Parent=MS.gene30808.t1 |
| chr6.4 | CDS | 38815484 | 38817379 | 38815484 | ID=cds.MS.gene30808.t1;Parent=MS.gene30808.t1 |
| Gene Sequence |
| Protein sequence |
