Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055442.t1 | XP_003610653.1 | 92.9 | 410 | 27 | 2 | 1 | 409 | 139 | 547 | 1.10E-190 | 676 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055442.t1 | Q9M0X5 | 53.3 | 424 | 179 | 4 | 1 | 407 | 140 | 561 | 7.3e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055442.t1 | G7K103 | 92.9 | 410 | 27 | 2 | 1 | 409 | 139 | 547 | 7.8e-191 | 676.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051541 | MS.gene055442 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene051831 | MS.gene055442 | 0.801457 | 8.92E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene055442 | 0.832317 | 1.01E-55 | -1.69E-46 |
| MS.gene055442 | MS.gene058429 | 0.805843 | 1.10E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene060851 | 0.813247 | 2.82E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene060852 | 0.81377 | 2.16E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene061958 | 0.831469 | 1.64E-55 | -1.69E-46 |
| MS.gene055442 | MS.gene067043 | 0.809781 | 1.60E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene074100 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene23464 | 0.822485 | 2.31E-53 | -1.69E-46 |
| MS.gene055442 | MS.gene25559 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene28491 | 0.802431 | 5.63E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene30808 | 0.824572 | 7.51E-54 | -1.69E-46 |
| MS.gene055442 | MS.gene31738 | 0.801615 | 8.28E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene31960 | -0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene055442 | MS.gene32863 | 0.822741 | 2.01E-53 | -1.69E-46 |
| MS.gene055442 | MS.gene33056 | 0.81148 | 6.85E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene35754 | 0.80691 | 6.54E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene37468 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene42295 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene055442 | MS.gene45374 | 0.812688 | 3.74E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene47695 | 0.815694 | 8.11E-52 | -1.69E-46 |
| MS.gene055442 | MS.gene50934 | 0.810424 | 1.16E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene54377 | 0.811977 | 5.34E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene54380 | 0.806655 | 7.40E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene57028 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene64284 | 0.803569 | 3.28E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene64665 | 0.81732 | 3.51E-52 | -1.69E-46 |
| MS.gene055442 | MS.gene75219 | 0.807281 | 5.46E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene75564 | 0.822708 | 2.05E-53 | -1.69E-46 |
| MS.gene055442 | MS.gene76515 | 0.804442 | 2.16E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene77971 | -0.814818 | 1.27E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene83687 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene055442 | MS.gene84498 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene88883 | 0.808078 | 3.69E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene90119 | 0.800369 | 1.49E-48 | -1.69E-46 |
| MS.gene055442 | MS.gene90604 | 0.816266 | 6.04E-52 | -1.69E-46 |
| MS.gene055442 | MS.gene91006 | 0.809121 | 2.21E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene92336 | 0.833532 | 5.05E-56 | -1.69E-46 |
| MS.gene055442 | MS.gene95339 | 0.818869 | 1.56E-52 | -1.69E-46 |
| MS.gene055442 | MS.gene97003 | 0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene97613 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene97896 | 0.813232 | 2.84E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene99465 | 0.800735 | 1.25E-48 | -1.69E-46 |
| MS.gene055442 | MS.gene99525 | 0.802097 | 6.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATTTGGTGACTTTATT+AGG | 0.160995 | 5.2:-497396 | MS.gene055442:CDS |
| AGTCTTGATTATTTCCTATT+TGG | 0.186076 | 5.2:-497318 | MS.gene055442:intron |
| TTTGAGCGTTATAAAATTAT+AGG | 0.242894 | 5.2:-497144 | MS.gene055442:CDS |
| CAAGCTTCAACATAGAAATT+TGG | 0.255612 | 5.2:-497409 | MS.gene055442:CDS |
| TGTCCGTGCATTGCATATTC+TGG | 0.271964 | 5.2:+496770 | None:intergenic |
| TTTCAGTACTCACAGTTCTT+AGG | 0.283434 | 5.2:+496642 | None:intergenic |
| ACGAGAAGCATGAAGGTTTA+TGG | 0.285343 | 5.2:-500620 | MS.gene055442:CDS |
| AAGTAGAATCCTTACCAAAT+AGG | 0.341948 | 5.2:+497304 | None:intergenic |
| AAATCGGATGTGTTTAGCTT+TGG | 0.363608 | 5.2:-496737 | MS.gene055442:CDS |
| AAGAAACTCTCGAGAAGTTC+AGG | 0.366241 | 5.2:-497474 | MS.gene055442:CDS |
| GAGATAGGCAAAGGAGGATT+TGG | 0.368482 | 5.2:-497768 | MS.gene055442:CDS |
| ATAATTCTTGAGATAGTTAG+TGG | 0.382617 | 5.2:-496710 | MS.gene055442:CDS |
| GTTCTCACTTGAAAATTTGT+TGG | 0.396854 | 5.2:+497791 | None:intergenic |
| TGATGATGGTGTACCATATA+AGG | 0.416792 | 5.2:+500442 | None:intergenic |
| TCAAAATCGTGTGATTGAAT+AGG | 0.428079 | 5.2:+496671 | None:intergenic |
| ACACCATCATCATCTTCTTC+AGG | 0.429643 | 5.2:-500431 | MS.gene055442:intron |
| AGCATGAAGGTTTATGGATC+AGG | 0.434658 | 5.2:-500614 | MS.gene055442:CDS |
| AATTGTCATAATTATTTCCC+TGG | 0.446095 | 5.2:-498090 | MS.gene055442:CDS |
| TCTCGTCACTTCCACTTGTC+CGG | 0.447908 | 5.2:+500637 | None:intergenic |
| AAATAATCAAGACTCTTATT+AGG | 0.452516 | 5.2:+497327 | None:intergenic |
| ACAGCGAAGAAATTTGCTTC+CGG | 0.458901 | 5.2:-500656 | MS.gene055442:CDS |
| TCATCTAACAATACATTGCT+AGG | 0.461649 | 5.2:+497051 | None:intergenic |
| CCTATAAAGAAAAGTAATAC+AGG | 0.464647 | 5.2:+498059 | None:intergenic |
| CTTTGAACGGTTCAATGAAA+CGG | 0.464739 | 5.2:-500726 | MS.gene055442:CDS |
| CAAATTTCTATGTTGAAGCT+TGG | 0.474099 | 5.2:+497410 | None:intergenic |
| TGGTTGCGGCGGCGAATTCA+AGG | 0.474583 | 5.2:-500679 | MS.gene055442:CDS |
| TTATAGGCTGCTATTACAAA+CGG | 0.475600 | 5.2:-498043 | MS.gene055442:CDS |
| TGGGTTGTTGAATGACTTGG+TGG | 0.476077 | 5.2:-500699 | MS.gene055442:CDS |
| GTTGAATGACTTGGTGGTTG+CGG | 0.482682 | 5.2:-500693 | MS.gene055442:CDS |
| TTGCAGGGTGTTCTTTCTGA+TGG | 0.488761 | 5.2:-497513 | MS.gene055442:intron |
| GTAATACAGGAACAATGGCC+AGG | 0.490657 | 5.2:+498072 | None:intergenic |
| CTCACTTGAAAATTTGTTGG+TGG | 0.503701 | 5.2:+497794 | None:intergenic |
| CAAGACTTAAAGTCATACAT+AGG | 0.507554 | 5.2:-497083 | MS.gene055442:CDS |
| GTACCATATAAGGTGTAAAA+CGG | 0.509087 | 5.2:+500452 | None:intergenic |
| GACTTTATTAGGATTCTGCT+TGG | 0.524389 | 5.2:-497385 | MS.gene055442:CDS |
| GAGCGTTATAAAATTATAGG+AGG | 0.531998 | 5.2:-497141 | MS.gene055442:CDS |
| AGGATTTGGTATTGTCTACA+AGG | 0.532008 | 5.2:-497754 | MS.gene055442:intron |
| AAAAGCATAGAGTGCTACAT+TGG | 0.538416 | 5.2:-497167 | MS.gene055442:CDS |
| ATTTGTTTAAGAAATGCCAT+TGG | 0.540226 | 5.2:-500554 | MS.gene055442:CDS |
| GAAATTTGCTTCCGGACAAG+TGG | 0.544677 | 5.2:-500648 | MS.gene055442:CDS |
| GATATTACAGTATTGAACCT+AGG | 0.561956 | 5.2:-500787 | None:intergenic |
| TTTCTGGTGTTGACTTTGAA+CGG | 0.570183 | 5.2:-500739 | MS.gene055442:CDS |
| AGAGACGTAGGACAATGCTA+AGG | 0.572116 | 5.2:-498007 | MS.gene055442:CDS |
| ATTACAAACGGAGAAGATCA+AGG | 0.575259 | 5.2:-498031 | MS.gene055442:CDS |
| ACACTCTGGCAATGTTCCAA+TGG | 0.576934 | 5.2:+500538 | None:intergenic |
| TCTTGTCCAGTGCAACACTC+TGG | 0.582248 | 5.2:+500524 | None:intergenic |
| AAGACTTAAAGTCATACATA+GGG | 0.583663 | 5.2:-497082 | MS.gene055442:CDS |
| GAAAAGTAATACAGGAACAA+TGG | 0.586366 | 5.2:+498067 | None:intergenic |
| CTCTCGAGAAGTTCAGGACA+AGG | 0.591516 | 5.2:-497468 | MS.gene055442:CDS |
| GAAGATCAAGGCAGAGACGT+AGG | 0.595587 | 5.2:-498019 | MS.gene055442:CDS |
| GCAAGCACTAACAGAATCGT+GGG | 0.600211 | 5.2:-496964 | MS.gene055442:CDS |
| AGTGAGAACGAGATAGGCAA+AGG | 0.602168 | 5.2:-497777 | MS.gene055442:CDS |
| ACATTGCCAGAGTGTTGCAC+TGG | 0.603608 | 5.2:-500530 | MS.gene055442:CDS |
| GAATGACTTGGTGGTTGCGG+CGG | 0.607435 | 5.2:-500690 | MS.gene055442:CDS |
| TAATACAGGAACAATGGCCA+GGG | 0.614726 | 5.2:+498073 | None:intergenic |
| GGAAGTGACGAGAAGCATGA+AGG | 0.614986 | 5.2:-500627 | MS.gene055442:CDS |
| AGCAAGCACTAACAGAATCG+TGG | 0.615702 | 5.2:-496965 | MS.gene055442:CDS |
| GAGAACGAGATAGGCAAAGG+AGG | 0.628753 | 5.2:-497774 | MS.gene055442:CDS |
| GAGTGTTGCACTGGACAAGA+GGG | 0.638536 | 5.2:-500521 | MS.gene055442:CDS |
| TCTCCAGAATATGCAATGCA+CGG | 0.645035 | 5.2:-496773 | MS.gene055442:CDS |
| AGAGTGTTGCACTGGACAAG+AGG | 0.645091 | 5.2:-500522 | MS.gene055442:CDS |
| GAGACGTAGGACAATGCTAA+GGG | 0.646741 | 5.2:-498006 | MS.gene055442:CDS |
| GTACCTGAAGAAGATGATGA+TGG | 0.655699 | 5.2:+500428 | None:intergenic |
| ATTATAGGAGGAATTGCACG+AGG | 0.720741 | 5.2:-497129 | MS.gene055442:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTAATTTTTTTAA+GGG | + | chr5.2:498240-498259 | None:intergenic | 0.0% |
| !!! | TATAATTTTTAATTTTTTTA+AGG | + | chr5.2:498241-498260 | None:intergenic | 0.0% |
| !! | TTATAAAATCAATATATATG+AGG | - | chr5.2:498800-498819 | MS.gene055442:intron | 10.0% |
| !! | TTGTATGTATATTATATTTA+TGG | - | chr5.2:499453-499472 | MS.gene055442:intron | 10.0% |
| !! | TTGTTATATATATATTTGAA+AGG | - | chr5.2:497785-497804 | MS.gene055442:CDS | 10.0% |
| !!! | AAGTTTTTACTTTTAAATTA+AGG | - | chr5.2:497183-497202 | MS.gene055442:intron | 10.0% |
| !!! | AGTTTTTACTTTTAAATTAA+GGG | - | chr5.2:497184-497203 | MS.gene055442:intron | 10.0% |
| !!! | ATTTTGCTTATATTTTAAAA+CGG | - | chr5.2:498982-499001 | MS.gene055442:intron | 10.0% |
| !!! | ATTTTTTAAGAAGAATAAAT+TGG | + | chr5.2:497979-497998 | None:intergenic | 10.0% |
| !!! | GATTTAATCATTTTTTAAAT+TGG | - | chr5.2:498453-498472 | MS.gene055442:intron | 10.0% |
| !!! | GTATTTTTTATTATCATAAA+AGG | + | chr5.2:497611-497630 | None:intergenic | 10.0% |
| !! | AAAAAACAAACAAACAAAAT+TGG | - | chr5.2:498003-498022 | MS.gene055442:CDS | 15.0% |
| !! | AAAAACAAACAAACAAAATT+GGG | - | chr5.2:498004-498023 | MS.gene055442:CDS | 15.0% |
| !! | AAAATAAGCAAAATGAAAAT+GGG | + | chr5.2:499500-499519 | None:intergenic | 15.0% |
| !! | AAACAATATATAATACATAC+AGG | - | chr5.2:497928-497947 | MS.gene055442:intron | 15.0% |
| !! | AAGATGGTAAAAAAAAAAAT+TGG | - | chr5.2:497494-497513 | MS.gene055442:CDS | 15.0% |
| !! | AATAGTGAATATGAATAATT+AGG | - | chr5.2:497634-497653 | MS.gene055442:intron | 15.0% |
| !! | GTATATTTACAAAACATATA+GGG | + | chr5.2:498289-498308 | None:intergenic | 15.0% |
| !! | TAAAATAAGCAAAATGAAAA+TGG | + | chr5.2:499501-499520 | None:intergenic | 15.0% |
| !! | TATATATAACAAAAATACAG+TGG | + | chr5.2:497777-497796 | None:intergenic | 15.0% |
| !! | TGTATATTTACAAAACATAT+AGG | + | chr5.2:498290-498309 | None:intergenic | 15.0% |
| !!! | AGGAGTATATATTTATAATT+TGG | + | chr5.2:498850-498869 | None:intergenic | 15.0% |
| !!! | ATATTTTTTATAAGATGGAT+AGG | - | chr5.2:500527-500546 | MS.gene055442:CDS | 15.0% |
| !!! | ATTTTGCTTATATTTTGAAA+CGG | + | chr5.2:498874-498893 | None:intergenic | 15.0% |
| !!! | TATCGATAATTTTTTTATAG+TGG | - | chr5.2:500629-500648 | MS.gene055442:CDS | 15.0% |
| !!! | TATTTTTTTTTGAGGATATA+AGG | + | chr5.2:498265-498284 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTATGATTTTGAT+CGG | + | chr5.2:498119-498138 | None:intergenic | 15.0% |
| !! | AAAAATGGTAAAAATGTTTC+TGG | - | chr5.2:496677-496696 | MS.gene055442:CDS | 20.0% |
| !! | AAACATTTATCTTAGAAAGA+TGG | - | chr5.2:497478-497497 | MS.gene055442:CDS | 20.0% |
| !! | AAATAATCAAGACTCTTATT+AGG | + | chr5.2:500108-500127 | None:intergenic | 20.0% |
| !! | AATGGTAAAAAAAAAATCTC+AGG | - | chr5.2:499041-499060 | MS.gene055442:intron | 20.0% |
| !! | AGAAGAATAAATTGGATATT+CGG | + | chr5.2:497971-497990 | None:intergenic | 20.0% |
| !! | AGATTAAAACTGTATTCAAA+TGG | - | chr5.2:499023-499042 | MS.gene055442:intron | 20.0% |
| !! | GAAAATATATTATGGGATAA+AGG | + | chr5.2:497249-497268 | None:intergenic | 20.0% |
| !! | TAATTTATGAAACACAACAA+AGG | + | chr5.2:499214-499233 | None:intergenic | 20.0% |
| !! | TCAAATCTTCAATTTCTATT+TGG | - | chr5.2:499239-499258 | MS.gene055442:intron | 20.0% |
| !! | TTTGAGCGTTATAAAATTAT+AGG | - | chr5.2:500288-500307 | MS.gene055442:intron | 20.0% |
| !!! | AAAAATATCAGATTTTGGTT+TGG | - | chr5.2:500416-500435 | MS.gene055442:intron | 20.0% |
| !!! | AAACCAAAATCTGATATTTT+TGG | + | chr5.2:500417-500436 | None:intergenic | 20.0% |
| !!! | AATCCAAAAATATCAGATTT+TGG | - | chr5.2:500411-500430 | MS.gene055442:intron | 20.0% |
| !!! | ATAAGCAAAATTCACTTTTT+AGG | + | chr5.2:498902-498883 | None:intergenic | 20.0% |
| !!! | ATATTTTATTCTTATTTGGC+TGG | + | chr5.2:498595-498614 | None:intergenic | 20.0% |
| !!! | ATTTTAGTTTATTGGTAGAT+CGG | + | chr5.2:498390-498409 | None:intergenic | 20.0% |
| !!! | GAAACATTTTTACCATTTTT+AGG | + | chr5.2:496677-496696 | None:intergenic | 20.0% |
| !!! | TAAGCAAAATTCACTTTTTT+AGG | - | chr5.2:498884-498903 | MS.gene055442:intron | 20.0% |
| !!! | TATAGGGATATTTTTTTTTG+AGG | + | chr5.2:498273-498292 | None:intergenic | 20.0% |
| !!! | TTGCTTTGATTTTAGTTTAT+TGG | + | chr5.2:498398-498417 | None:intergenic | 20.0% |
| ! | AACAAAAGTGATGAATTCAA+TGG | + | chr5.2:497139-497158 | None:intergenic | 25.0% |
| ! | AACCAATAGATTATTATTGC+AGG | - | chr5.2:499903-499922 | MS.gene055442:intron | 25.0% |
| ! | AAGACTTAAAGTCATACATA+GGG | - | chr5.2:500350-500369 | MS.gene055442:intron | 25.0% |
| ! | AAGATGTATATTCAAGTGAT+TGG | + | chr5.2:498650-498669 | None:intergenic | 25.0% |
| ! | AATCGATCTAAAAATGTTTG+TGG | + | chr5.2:498437-498456 | None:intergenic | 25.0% |
| ! | AATTGTCATAATTATTTCCC+TGG | - | chr5.2:499342-499361 | MS.gene055442:intron | 25.0% |
| ! | ACACAATTCAAATTTAACTC+AGG | - | chr5.2:497902-497921 | MS.gene055442:intron | 25.0% |
| ! | ACCAATAGATTATTATTGCA+GGG | - | chr5.2:499904-499923 | MS.gene055442:intron | 25.0% |
| ! | AGATGTATATTCAAGTGATT+GGG | + | chr5.2:498649-498668 | None:intergenic | 25.0% |
| ! | AGTCTTGATTATTTCCTATT+TGG | - | chr5.2:500114-500133 | MS.gene055442:intron | 25.0% |
| ! | ATAATTCTTGAGATAGTTAG+TGG | - | chr5.2:500722-500741 | MS.gene055442:CDS | 25.0% |
| ! | ATATAATACATACAGGAAGT+CGG | - | chr5.2:497935-497954 | MS.gene055442:intron | 25.0% |
| ! | ATCTGTCTCATAATATTTGT+CGG | + | chr5.2:497750-497769 | None:intergenic | 25.0% |
| ! | ATTTGTTTAAGAAATGCCAT+TGG | - | chr5.2:496878-496897 | MS.gene055442:intron | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr5.2:498909-498928 | MS.gene055442:intron | 25.0% |
| ! | CCTATAAAGAAAAGTAATAC+AGG | + | chr5.2:499376-499395 | None:intergenic | 25.0% |
| ! | GAATCTACAAATTAGTCATA+GGG | + | chr5.2:500243-500262 | None:intergenic | 25.0% |
| ! | GTTTGAAAGTTAAAACTCAA+GGG | + | chr5.2:498627-498646 | None:intergenic | 25.0% |
| ! | TCAAAAATACCACAAATTGA+TGG | - | chr5.2:498765-498784 | MS.gene055442:intron | 25.0% |
| ! | TGATTATTTCCTATTTGGTA+AGG | - | chr5.2:500119-500138 | MS.gene055442:intron | 25.0% |
| ! | TTTGAAAGTTAAAACTCAAG+GGG | + | chr5.2:498626-498645 | None:intergenic | 25.0% |
| !! | AGAAATTTGGTGACTTTATT+AGG | - | chr5.2:500036-500055 | MS.gene055442:intron | 25.0% |
| !! | AGTTCCTTGTTGTAAATTAA+GGG | + | chr5.2:500607-500626 | None:intergenic | 25.0% |
| !! | ATCTTTTATGAAGGGTTATA+GGG | - | chr5.2:497327-497346 | MS.gene055442:CDS | 25.0% |
| !! | ATTTTGTATACTCTGATTAG+TGG | + | chr5.2:498355-498374 | None:intergenic | 25.0% |
| !! | GGGCATATTTTATTCTTATT+TGG | + | chr5.2:498599-498618 | None:intergenic | 25.0% |
| !! | TAGTTCCTTGTTGTAAATTA+AGG | + | chr5.2:500608-500627 | None:intergenic | 25.0% |
| !! | TTCTACTCATCTTTTATGAA+GGG | - | chr5.2:497319-497338 | MS.gene055442:CDS | 25.0% |
| !!! | ATTTTTAGTCCATCAATTTG+TGG | + | chr5.2:498777-498796 | None:intergenic | 25.0% |
| !!! | CCTGTATTACTTTTCTTTAT+AGG | - | chr5.2:499373-499392 | MS.gene055442:intron | 25.0% |
| !!! | TGCTTATATTTTAAAACGGA+TGG | - | chr5.2:498986-499005 | MS.gene055442:intron | 25.0% |
| !!! | TTTTAGTTTATTGGTAGATC+GGG | + | chr5.2:498389-498408 | None:intergenic | 25.0% |
| AAAAATCTCAGGATTTCACT+TGG | - | chr5.2:499052-499071 | MS.gene055442:intron | 30.0% | |
| AAAATCTCAGGATTTCACTT+GGG | - | chr5.2:499053-499072 | MS.gene055442:intron | 30.0% | |
| AAGTAGAATCCTTACCAAAT+AGG | + | chr5.2:500131-500150 | None:intergenic | 30.0% | |
| ACCCTGCAATAATAATCTAT+TGG | + | chr5.2:499908-499927 | None:intergenic | 30.0% | |
| ATATTGTACGCAGGAAAAAA+TGG | - | chr5.2:499304-499323 | MS.gene055442:intron | 30.0% | |
| ATTTCTCATTTGCAAAGTGT+AGG | + | chr5.2:499710-499729 | None:intergenic | 30.0% | |
| CAAATTTCTATGTTGAAGCT+TGG | + | chr5.2:500025-500044 | None:intergenic | 30.0% | |
| CAAGACTTAAAGTCATACAT+AGG | - | chr5.2:500349-500368 | MS.gene055442:intron | 30.0% | |
| CAAGCTTCAACATAGAAATT+TGG | - | chr5.2:500023-500042 | MS.gene055442:intron | 30.0% | |
| CCTAGGTTAAATCCTAAAAA+TGG | - | chr5.2:496662-496681 | MS.gene055442:CDS | 30.0% | |
| CTTTGCATACTTACGTTAAT+CGG | - | chr5.2:499550-499569 | MS.gene055442:intron | 30.0% | |
| GAAAAGTAATACAGGAACAA+TGG | + | chr5.2:499368-499387 | None:intergenic | 30.0% | |
| GAGCGTTATAAAATTATAGG+AGG | - | chr5.2:500291-500310 | MS.gene055442:intron | 30.0% | |
| GATCAAAGATTAAGCACTAT+GGG | - | chr5.2:497112-497131 | MS.gene055442:CDS | 30.0% | |
| GATGTATGTGGTTCATAATA+CGG | - | chr5.2:498921-498940 | MS.gene055442:intron | 30.0% | |
| GGAATCTACAAATTAGTCAT+AGG | + | chr5.2:500244-500263 | None:intergenic | 30.0% | |
| GGTTTGAAAGTTAAAACTCA+AGG | + | chr5.2:498628-498647 | None:intergenic | 30.0% | |
| GTACCATATAAGGTGTAAAA+CGG | + | chr5.2:496983-497002 | None:intergenic | 30.0% | |
| GTTCTCACTTGAAAATTTGT+TGG | + | chr5.2:499644-499663 | None:intergenic | 30.0% | |
| TATCTCTCATCTAAATTGCA+CGG | + | chr5.2:499109-499128 | None:intergenic | 30.0% | |
| TCAAAATCGTGTGATTGAAT+AGG | + | chr5.2:500764-500783 | None:intergenic | 30.0% | |
| TCATCTAACAATACATTGCT+AGG | + | chr5.2:500384-500403 | None:intergenic | 30.0% | |
| TGATCAAAGATTAAGCACTA+TGG | - | chr5.2:497111-497130 | MS.gene055442:CDS | 30.0% | |
| TTATAGGCTGCTATTACAAA+CGG | - | chr5.2:499389-499408 | MS.gene055442:intron | 30.0% | |
| TTGGTTGAATTCATTCAATG+AGG | - | chr5.2:498073-498092 | MS.gene055442:CDS | 30.0% | |
| ! | CATCTTTTATGAAGGGTTAT+AGG | - | chr5.2:497326-497345 | MS.gene055442:CDS | 30.0% |
| ! | GTTCTACTCATCTTTTATGA+AGG | - | chr5.2:497318-497337 | MS.gene055442:intron | 30.0% |
| ! | TATCCGTTTTACACCTTATA+TGG | - | chr5.2:496977-496996 | MS.gene055442:CDS | 30.0% |
| ! | TATTCAATCACACGATTTTG+AGG | - | chr5.2:500763-500782 | MS.gene055442:CDS | 30.0% |
| ! | TTTTGTTGAGGCAGTTTAAT+TGG | - | chr5.2:497152-497171 | MS.gene055442:CDS | 30.0% |
| !! | TGAATTCATCACTTTTGTTG+AGG | - | chr5.2:497140-497159 | MS.gene055442:CDS | 30.0% |
| !!! | CCATTTTTAGGATTTAACCT+AGG | + | chr5.2:496665-496684 | None:intergenic | 30.0% |
| !!! | GACATAGTTTTTGGTGATAT+TGG | + | chr5.2:499166-499185 | None:intergenic | 30.0% |
| !!! | TCTTTTTTTGAAGCAATCAG+TGG | + | chr5.2:498327-498346 | None:intergenic | 30.0% |
| !!! | TGCTTATATTTTGAAACGGA+AGG | + | chr5.2:498870-498889 | None:intergenic | 30.0% |
| AAAGTTAAAACTCAAGGGGT+AGG | + | chr5.2:498622-498641 | None:intergenic | 35.0% | |
| AAGTTAAAACTCAAGGGGTA+GGG | + | chr5.2:498621-498640 | None:intergenic | 35.0% | |
| ATCTTCACGTATATCACTAC+CGG | - | chr5.2:498665-498684 | MS.gene055442:intron | 35.0% | |
| ATTACAAACGGAGAAGATCA+AGG | - | chr5.2:499401-499420 | MS.gene055442:intron | 35.0% | |
| CAAACAAACAAAATTGGGTG+AGG | - | chr5.2:498009-498028 | MS.gene055442:CDS | 35.0% | |
| CATGCCCTTAATTTACAACA+AGG | - | chr5.2:500600-500619 | MS.gene055442:CDS | 35.0% | |
| CCACTACTTGAAACATCTTT+AGG | + | chr5.2:498572-498591 | None:intergenic | 35.0% | |
| CCTGCGTACAATATTTGATT+GGG | + | chr5.2:499298-499317 | None:intergenic | 35.0% | |
| CTGCGTACAATATTTGATTG+GGG | + | chr5.2:499297-499316 | None:intergenic | 35.0% | |
| CTTTGAACGGTTCAATGAAA+CGG | - | chr5.2:496706-496725 | MS.gene055442:CDS | 35.0% | |
| GACTTTATTAGGATTCTGCT+TGG | - | chr5.2:500047-500066 | MS.gene055442:intron | 35.0% | |
| GTAAGGATTCTACTTTGCAT+TGG | - | chr5.2:500136-500155 | MS.gene055442:intron | 35.0% | |
| GTACAATATTTGATTGGGGT+AGG | + | chr5.2:499293-499312 | None:intergenic | 35.0% | |
| TCCTGCGTACAATATTTGAT+TGG | + | chr5.2:499299-499318 | None:intergenic | 35.0% | |
| TTGAATGAATTCAACCAACG+TGG | + | chr5.2:498071-498090 | None:intergenic | 35.0% | |
| ! | AAAAGCATAGAGTGCTACAT+TGG | - | chr5.2:500265-500284 | MS.gene055442:intron | 35.0% |
| ! | AAATCGGATGTGTTTAGCTT+TGG | - | chr5.2:500695-500714 | MS.gene055442:CDS | 35.0% |
| ! | ACAACAAAGGCACAATATGA+GGG | + | chr5.2:499201-499220 | None:intergenic | 35.0% |
| ! | AGGATTTGGTATTGTCTACA+AGG | - | chr5.2:499678-499697 | MS.gene055442:intron | 35.0% |
| ! | ATGTAGCACTCTATGCTTTT+TGG | + | chr5.2:500265-500284 | None:intergenic | 35.0% |
| ! | CCTAAAGATGTTTCAAGTAG+TGG | - | chr5.2:498569-498588 | MS.gene055442:intron | 35.0% |
| ! | GACATAGCTTTTTGTGACAT+TGG | - | chr5.2:499077-499096 | MS.gene055442:intron | 35.0% |
| ! | GGTTCAATGAAACGGTTTTT+GGG | - | chr5.2:496714-496733 | MS.gene055442:CDS | 35.0% |
| ! | TTACGTTAATCGGTTCAGTT+GGG | - | chr5.2:499560-499579 | MS.gene055442:intron | 35.0% |
| !! | ACACTTGCTGACATAGTTTT+TGG | + | chr5.2:499175-499194 | None:intergenic | 35.0% |
| !! | CGGACAATTTTCTGAGAAAT+CGG | - | chr5.2:500679-500698 | MS.gene055442:CDS | 35.0% |
| !! | CTCACTTGAAAATTTGTTGG+TGG | + | chr5.2:499641-499660 | None:intergenic | 35.0% |
| !! | TGATGATGGTGTACCATATA+AGG | + | chr5.2:496993-497012 | None:intergenic | 35.0% |
| !! | TTTCTGGTGTTGACTTTGAA+CGG | - | chr5.2:496693-496712 | MS.gene055442:CDS | 35.0% |
| !!! | TTTTCAAGTGAGAACGAGAT+AGG | - | chr5.2:499649-499668 | MS.gene055442:intron | 35.0% |
| !!! | TTTTGGGTTGTTGAATGACT+TGG | - | chr5.2:496730-496749 | MS.gene055442:CDS | 35.0% |
| AAGAAACTCTCGAGAAGTTC+AGG | - | chr5.2:499958-499977 | MS.gene055442:intron | 40.0% | |
| ACACCATCATCATCTTCTTC+AGG | - | chr5.2:497001-497020 | MS.gene055442:CDS | 40.0% | |
| AGAACGTCCTCACAATGATA+AGG | + | chr5.2:497303-497322 | None:intergenic | 40.0% | |
| AGCATGAAGGTTTATGGATC+AGG | - | chr5.2:496818-496837 | MS.gene055442:intron | 40.0% | |
| AGTTAAAACTCAAGGGGTAG+GGG | + | chr5.2:498620-498639 | None:intergenic | 40.0% | |
| ATTATAGGAGGAATTGCACG+AGG | - | chr5.2:500303-500322 | MS.gene055442:intron | 40.0% | |
| CCCAATCAAATATTGTACGC+AGG | - | chr5.2:499295-499314 | MS.gene055442:intron | 40.0% | |
| GAACGTCCTCACAATGATAA+GGG | + | chr5.2:497302-497321 | None:intergenic | 40.0% | |
| GTACCTGAAGAAGATGATGA+TGG | + | chr5.2:497007-497026 | None:intergenic | 40.0% | |
| TAATACAGGAACAATGGCCA+GGG | + | chr5.2:499362-499381 | None:intergenic | 40.0% | |
| TACGCAGGAAAAAATGGAGT+TGG | - | chr5.2:499310-499329 | MS.gene055442:intron | 40.0% | |
| TATCACTACCGGGCATAAAA+AGG | - | chr5.2:498676-498695 | MS.gene055442:intron | 40.0% | |
| TCTCCAGAATATGCAATGCA+CGG | - | chr5.2:500659-500678 | MS.gene055442:CDS | 40.0% | |
| TCTTCACGTATATCACTACC+GGG | - | chr5.2:498666-498685 | MS.gene055442:intron | 40.0% | |
| ! | ACAGCGAAGAAATTTGCTTC+CGG | - | chr5.2:496776-496795 | MS.gene055442:CDS | 40.0% |
| ! | ACCATACTCCTTTTTATGCC+CGG | + | chr5.2:498687-498706 | None:intergenic | 40.0% |
| ! | ACGAGAAGCATGAAGGTTTA+TGG | - | chr5.2:496812-496831 | MS.gene055442:intron | 40.0% |
| ! | AGGCAGAGATGTTGACTATT+CGG | - | chr5.2:498044-498063 | MS.gene055442:CDS | 40.0% |
| ! | CACAACAAAGGCACAATATG+AGG | + | chr5.2:499202-499221 | None:intergenic | 40.0% |
| ! | CGGTTCAATGAAACGGTTTT+TGG | - | chr5.2:496713-496732 | MS.gene055442:CDS | 40.0% |
| ! | CTTACGTTAATCGGTTCAGT+TGG | - | chr5.2:499559-499578 | MS.gene055442:intron | 40.0% |
| ! | GGCATAAAAAGGAGTATGGT+TGG | - | chr5.2:498687-498706 | MS.gene055442:intron | 40.0% |
| ! | TACGTTAATCGGTTCAGTTG+GGG | - | chr5.2:499561-499580 | MS.gene055442:intron | 40.0% |
| ! | TGGAGCAGTTTGTTTAGAGT+TGG | + | chr5.2:497423-497442 | None:intergenic | 40.0% |
| ACACTCTGGCAATGTTCCAA+TGG | + | chr5.2:496897-496916 | None:intergenic | 45.0% | |
| ACCGGGCATAAAAAGGAGTA+TGG | - | chr5.2:498683-498702 | MS.gene055442:intron | 45.0% | |
| AGAGACGTAGGACAATGCTA+AGG | - | chr5.2:499425-499444 | MS.gene055442:intron | 45.0% | |
| AGCAAGCACTAACAGAATCG+TGG | - | chr5.2:500467-500486 | MS.gene055442:CDS | 45.0% | |
| AGTGAGAACGAGATAGGCAA+AGG | - | chr5.2:499655-499674 | MS.gene055442:intron | 45.0% | |
| CTCTGCGCAAGTATGGTTAT+TGG | + | chr5.2:497443-497462 | None:intergenic | 45.0% | |
| GAGACGTAGGACAATGCTAA+GGG | - | chr5.2:499426-499445 | MS.gene055442:intron | 45.0% | |
| GAGATAGGCAAAGGAGGATT+TGG | - | chr5.2:499664-499683 | MS.gene055442:intron | 45.0% | |
| GCAAGCACTAACAGAATCGT+GGG | - | chr5.2:500468-500487 | MS.gene055442:CDS | 45.0% | |
| GTAATACAGGAACAATGGCC+AGG | + | chr5.2:499363-499382 | None:intergenic | 45.0% | |
| GTACAGCCCTTATCATTGTG+AGG | - | chr5.2:497293-497312 | MS.gene055442:intron | 45.0% | |
| GTTAAAACTCAAGGGGTAGG+GGG | + | chr5.2:498619-498638 | None:intergenic | 45.0% | |
| TGATTGGGGTAGGTAAGTTC+AGG | + | chr5.2:499283-499302 | None:intergenic | 45.0% | |
| TGTCCGTGCATTGCATATTC+TGG | + | chr5.2:500665-500684 | None:intergenic | 45.0% | |
| ! | GAAATTTGCTTCCGGACAAG+TGG | - | chr5.2:496784-496803 | MS.gene055442:CDS | 45.0% |
| ! | GGCAGAGATGTTGACTATTC+GGG | - | chr5.2:498045-498064 | MS.gene055442:CDS | 45.0% |
| ! | TGGGTTGTTGAATGACTTGG+TGG | - | chr5.2:496733-496752 | MS.gene055442:CDS | 45.0% |
| ! | TTGCAGGGTGTTCTTTCTGA+TGG | - | chr5.2:499919-499938 | MS.gene055442:intron | 45.0% |
| !! | GTTGAATGACTTGGTGGTTG+CGG | - | chr5.2:496739-496758 | MS.gene055442:CDS | 45.0% |
| !! | AATTAAGAATAATATTAAAA+AGG | - | chr5.2:497271-497290 | MS.gene055442:intron | 5.0% |
| !! | ATGTTTAATTAATAAATTAA+AGG | - | chr5.2:497072-497091 | MS.gene055442:CDS | 5.0% |
| !! | TAAATAAAAATTATATTGAT+CGG | - | chr5.2:498195-498214 | MS.gene055442:intron | 5.0% |
| !! | TAATTATGAAAATATATTAT+GGG | + | chr5.2:497256-497275 | None:intergenic | 5.0% |
| !! | TTAATTATGAAAATATATTA+TGG | + | chr5.2:497257-497276 | None:intergenic | 5.0% |
| !!! | TTAATATATTTTTTATAAGA+TGG | - | chr5.2:500522-500541 | MS.gene055442:CDS | 5.0% |
| CATTGCTCTCTGCGCAAGTA+TGG | + | chr5.2:497450-497469 | None:intergenic | 50.0% | |
| CTCTCGAGAAGTTCAGGACA+AGG | - | chr5.2:499964-499983 | MS.gene055442:intron | 50.0% | |
| GAAGATCAAGGCAGAGACGT+AGG | - | chr5.2:499413-499432 | MS.gene055442:intron | 50.0% | |
| GAGAACGAGATAGGCAAAGG+AGG | - | chr5.2:499658-499677 | MS.gene055442:intron | 50.0% | |
| TCTCGTCACTTCCACTTGTC+CGG | + | chr5.2:496798-496817 | None:intergenic | 50.0% | |
| TCTTGTCCAGTGCAACACTC+TGG | + | chr5.2:496911-496930 | None:intergenic | 50.0% | |
| ! | GAGTGTTGCACTGGACAAGA+GGG | - | chr5.2:496911-496930 | MS.gene055442:intron | 50.0% |
| ! | GGAAGTGACGAGAAGCATGA+AGG | - | chr5.2:496805-496824 | MS.gene055442:intron | 50.0% |
| !! | ACATTGCCAGAGTGTTGCAC+TGG | - | chr5.2:496902-496921 | MS.gene055442:intron | 50.0% |
| !! | AGAGTGTTGCACTGGACAAG+AGG | - | chr5.2:496910-496929 | MS.gene055442:intron | 50.0% |
| GGGTGAGGAAGAAGACTCAG+AGG | - | chr5.2:498024-498043 | MS.gene055442:CDS | 55.0% | |
| GTTGACTATTCGGGCCACGT+TGG | - | chr5.2:498054-498073 | MS.gene055442:CDS | 55.0% | |
| !! | GAATGACTTGGTGGTTGCGG+CGG | - | chr5.2:496742-496761 | MS.gene055442:CDS | 55.0% |
| TGGTTGCGGCGGCGAATTCA+AGG | - | chr5.2:496753-496772 | MS.gene055442:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 496655 | 500799 | 496655 | ID=MS.gene055442 |
| chr5.2 | mRNA | 496655 | 500799 | 496655 | ID=MS.gene055442.t1;Parent=MS.gene055442 |
| chr5.2 | exon | 500432 | 500799 | 500432 | ID=MS.gene055442.t1.exon1;Parent=MS.gene055442.t1 |
| chr5.2 | CDS | 500432 | 500799 | 500432 | ID=cds.MS.gene055442.t1;Parent=MS.gene055442.t1 |
| chr5.2 | exon | 498000 | 498137 | 498000 | ID=MS.gene055442.t1.exon2;Parent=MS.gene055442.t1 |
| chr5.2 | CDS | 498000 | 498137 | 498000 | ID=cds.MS.gene055442.t1;Parent=MS.gene055442.t1 |
| chr5.2 | exon | 497755 | 497876 | 497755 | ID=MS.gene055442.t1.exon3;Parent=MS.gene055442.t1 |
| chr5.2 | CDS | 497755 | 497876 | 497755 | ID=cds.MS.gene055442.t1;Parent=MS.gene055442.t1 |
| chr5.2 | exon | 497319 | 497529 | 497319 | ID=MS.gene055442.t1.exon4;Parent=MS.gene055442.t1 |
| chr5.2 | CDS | 497319 | 497529 | 497319 | ID=cds.MS.gene055442.t1;Parent=MS.gene055442.t1 |
| chr5.2 | exon | 496958 | 497195 | 496958 | ID=MS.gene055442.t1.exon5;Parent=MS.gene055442.t1 |
| chr5.2 | CDS | 496958 | 497195 | 496958 | ID=cds.MS.gene055442.t1;Parent=MS.gene055442.t1 |
| chr5.2 | exon | 496655 | 496805 | 496655 | ID=MS.gene055442.t1.exon6;Parent=MS.gene055442.t1 |
| chr5.2 | CDS | 496655 | 496805 | 496655 | ID=cds.MS.gene055442.t1;Parent=MS.gene055442.t1 |
| Gene Sequence |
| Protein sequence |
