AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31860.t1 MTR_1g029520 98.372 430 7 0 25 454 254 683 0.0 877
MS.gene31860.t1 MTR_3g088885 80.617 454 80 6 1 453 1 447 0.0 741
MS.gene31860.t1 MTR_5g047260 53.759 439 183 7 8 446 16 434 1.75e-154 446
MS.gene31860.t1 MTR_7g022470 51.910 445 201 6 9 453 10 441 8.97e-152 439
MS.gene31860.t1 MTR_7g028050 48.764 445 217 6 9 452 1 435 1.56e-141 412
MS.gene31860.t1 MTR_4g101950 46.154 429 191 7 6 426 3 399 1.52e-129 382
MS.gene31860.t1 MTR_5g015170 46.207 435 215 8 10 432 10 437 3.30e-127 377
MS.gene31860.t1 MTR_5g011580 44.371 453 223 8 6 453 3 431 1.19e-126 375
MS.gene31860.t1 MTR_5g047260 52.355 361 156 5 8 368 16 360 3.62e-123 363
MS.gene31860.t1 MTR_4g097380 42.143 420 235 3 7 420 26 443 7.17e-116 348
MS.gene31860.t1 MTR_5g047260 53.398 309 129 4 8 316 16 309 1.81e-105 316
MS.gene31860.t1 MTR_7g028050 48.348 333 166 4 121 452 5 332 5.33e-99 300
MS.gene31860.t1 MTR_1g012740 49.000 100 45 1 283 382 54 147 7.50e-24 98.2
MS.gene31860.t1 MTR_1g012740 35.099 151 69 6 6 150 7 134 2.46e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31860.t1 AT1G76990 69.697 462 121 9 1 453 1 452 0.0 654
MS.gene31860.t1 AT1G76990 69.697 462 121 9 1 453 1 452 0.0 654
MS.gene31860.t1 AT1G76990 69.697 462 121 9 1 453 1 452 0.0 654
MS.gene31860.t1 AT1G76990 69.697 462 121 9 1 453 1 452 0.0 654
MS.gene31860.t1 AT1G76990 69.697 462 121 9 1 453 1 452 0.0 654
MS.gene31860.t1 AT1G69040 52.232 448 191 7 9 450 11 441 4.65e-150 435
MS.gene31860.t1 AT1G69040 52.232 448 191 7 9 450 7 437 5.70e-150 434
MS.gene31860.t1 AT5G25320 49.206 441 196 7 1 414 1 440 1.65e-145 425
MS.gene31860.t1 AT2G03730 50.000 458 205 9 4 451 3 446 3.88e-145 422
MS.gene31860.t1 AT2G03730 50.000 458 205 9 4 451 3 446 3.88e-145 422
MS.gene31860.t1 AT3G01990 50.493 406 186 5 10 415 17 407 7.53e-137 401
MS.gene31860.t1 AT3G01990 50.493 406 186 5 10 415 17 407 7.53e-137 401
MS.gene31860.t1 AT3G01990 50.493 406 186 5 10 415 3 393 1.18e-136 400
MS.gene31860.t1 AT3G01990 50.493 406 186 5 10 415 3 393 1.18e-136 400
MS.gene31860.t1 AT3G01990 50.493 406 186 5 10 415 17 407 1.59e-136 400
MS.gene31860.t1 AT3G01990 50.493 406 186 5 10 415 3 393 1.62e-136 399
MS.gene31860.t1 AT5G25320 48.010 402 183 5 38 414 1 401 1.95e-126 375
MS.gene31860.t1 AT4G22780 47.160 405 189 4 12 415 9 389 1.22e-123 367
MS.gene31860.t1 AT4G22780 47.160 405 189 4 12 415 9 389 1.22e-123 367
MS.gene31860.t1 AT1G12420 45.476 420 206 8 8 427 6 402 1.16e-119 357
MS.gene31860.t1 AT5G25320 46.791 374 171 7 1 347 1 373 4.28e-112 335
MS.gene31860.t1 AT5G65890 40.213 470 254 7 7 454 8 472 9.88e-111 335
MS.gene31860.t1 AT5G65890 40.213 470 254 7 7 454 8 472 9.88e-111 335
MS.gene31860.t1 AT3G01990 48.980 343 160 5 10 352 17 344 5.00e-108 324
MS.gene31860.t1 AT3G01990 48.980 343 160 5 10 352 3 330 6.18e-108 323
MS.gene31860.t1 AT3G01990 49.408 338 156 5 10 347 17 339 1.09e-107 323
MS.gene31860.t1 AT1G12420 43.182 352 178 7 76 427 1 330 6.79e-91 280
MS.gene31860.t1 AT5G65890 37.882 425 237 7 52 454 1 420 3.38e-89 278
MS.gene31860.t1 AT5G65890 37.882 425 237 7 52 454 1 420 3.38e-89 278
MS.gene31860.t1 AT3G01990 47.003 317 153 5 10 326 17 318 1.56e-88 273
MS.gene31860.t1 AT3G01990 47.003 317 153 5 10 326 3 304 1.69e-88 272
MS.gene31860.t1 AT5G65890 36.207 348 203 5 124 454 13 358 6.24e-66 216

Find 131 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAACTCTTCACACCTTC+TGG 0.132030 1.4:+14565506 None:intergenic
TTGACTCTCCTCCCTCTTTC+AGG 0.160628 1.4:-14565085 MS.gene31860:CDS
TTCTGATGGTAGTTGGTTTA+TGG 0.190044 1.4:-14566313 MS.gene31860:CDS
AATACGCTCTATTTCAATAT+TGG 0.195002 1.4:+14565061 None:intergenic
GCCCATCCTCGAGACGTTTC+TGG 0.220608 1.4:+14562764 None:intergenic
CACGACTTCCAGCAGAATTC+CGG 0.249259 1.4:+14566383 None:intergenic
CCCAACTCTTCACACCTTCT+GGG 0.315377 1.4:+14565507 None:intergenic
GAAGCACTGCGTAAAGAAAT+TGG 0.317035 1.4:-14562836 MS.gene31860:CDS
GCTAGAGTAAGCTTCTTCTT+TGG 0.317293 1.4:-14562743 MS.gene31860:CDS
ATACGCTCTATTTCAATATT+GGG 0.319901 1.4:+14565062 None:intergenic
CTAGAGTAAGCTTCTTCTTT+GGG 0.326628 1.4:-14562742 MS.gene31860:CDS
CCAAATGTTGTTTGCTGATA+GGG 0.330716 1.4:-14565147 MS.gene31860:CDS
TCTAATTCGCAGGGTCTCTA+TGG 0.333159 1.4:-14566972 MS.gene31860:intron
ACCAAATGTTGTTTGCTGAT+AGG 0.341425 1.4:-14565148 MS.gene31860:CDS
GGCTCGGACCAGTTTCTCCT+TGG 0.354012 1.4:-14565204 MS.gene31860:CDS
CCCTATCAGCAAACAACATT+TGG 0.356933 1.4:+14565147 None:intergenic
TTCAATATTGGGCCTGAAAG+AGG 0.366015 1.4:+14565073 None:intergenic
ATTTAGTCCTTTCTCTCCTA+TGG 0.378855 1.4:+14562910 None:intergenic
CTTCTTCTTTGGGAACTTGT+TGG 0.378986 1.4:-14562732 MS.gene31860:CDS
ATAGAGCGTATTGAGGAAAA+AGG 0.379809 1.4:-14565050 MS.gene31860:CDS
TCGAGACGTTTCTGGTGCTT+TGG 0.390958 1.4:+14562772 None:intergenic
CTGTTGCATCATTGACATAA+AGG 0.392060 1.4:+14565318 None:intergenic
CAGCTGCAATCACATTGAAT+TGG 0.392381 1.4:+14565375 None:intergenic
ACGACTTCCAGCAGAATTCC+GGG 0.392506 1.4:+14566384 None:intergenic
GGTGAAACCCAAGGAGAAAC+TGG 0.393937 1.4:+14565196 None:intergenic
TCTGGGCTCTTGCGGCCCTT+TGG 0.393975 1.4:+14565524 None:intergenic
CTGAAGTTTGGACTCATAAC+AGG 0.401956 1.4:-14565355 MS.gene31860:CDS
CGTTTCTGGTGCTTTGGTGT+TGG 0.410409 1.4:+14562778 None:intergenic
ACATATCTTCTGATGGTAGT+TGG 0.412715 1.4:-14566320 MS.gene31860:CDS
ATGTGATTGCAGCTGAAGTT+TGG 0.418119 1.4:-14565367 MS.gene31860:CDS
GCTCGGACCAGTTTCTCCTT+GGG 0.418262 1.4:-14565203 MS.gene31860:CDS
ATCAGAAGATATGTAAGCTT+TGG 0.421120 1.4:+14566329 None:intergenic
GCCCAGAAGGTGTGAAGAGT+TGG 0.421778 1.4:-14565508 MS.gene31860:CDS
AGAACAGCTTAACAGTTTGT+AGG 0.425881 1.4:-14562946 MS.gene31860:CDS
CATTGAATTGGAAGCTCGCC+AGG 0.426882 1.4:+14565387 None:intergenic
ACAAAAGACCTGGGCGGTCC+CGG 0.430029 1.4:+14565426 None:intergenic
CATACAGCCATTGAGCTCAT+TGG 0.446032 1.4:-14565449 MS.gene31860:CDS
TCATACTCAGGATCAAAGTA+TGG 0.448114 1.4:+14567445 None:intergenic
TCTGGTGCTTTGGTGTTGGC+TGG 0.449272 1.4:+14562782 None:intergenic
CAATAAACCCGGAATTCTGC+TGG 0.451982 1.4:-14566391 MS.gene31860:CDS
AATTATTGACTTCATTGAAA+AGG 0.455728 1.4:-14566007 MS.gene31860:intron
AGCTTAACAGTTTGTAGGGC+AGG 0.456982 1.4:-14562941 MS.gene31860:CDS
CCCAGAAGGTGTGAAGAGTT+GGG 0.459787 1.4:-14565507 MS.gene31860:CDS
TCTTTGGGAACTTGTTGGAA+AGG 0.462241 1.4:-14562727 MS.gene31860:CDS
CATGCCTCCATCTCATCTGA+AGG 0.466025 1.4:-14564936 MS.gene31860:CDS
TGAAGAGTTGGGAAGGCAAA+CGG 0.470682 1.4:-14565496 MS.gene31860:CDS
ACACTGAAGGGGAGAAAGAA+AGG 0.477680 1.4:-14563996 MS.gene31860:CDS
TCAATGATGTTCATATCCAC+AGG 0.481133 1.4:+14562857 None:intergenic
GTTGAATGGCAAAAGTTTGT+TGG 0.483753 1.4:-14567468 None:intergenic
TTATGAAGTCAAGGTCTGTC+AGG 0.488033 1.4:+14566355 None:intergenic
CGGGTTGGCATTCACTCCAT+TGG 0.490248 1.4:-14565476 MS.gene31860:CDS
TTGCTGAAGTTCTCATACTC+AGG 0.492722 1.4:+14567433 None:intergenic
GTCTGAGATATCAGCTGTCC+TGG 0.493937 1.4:-14565405 MS.gene31860:CDS
GAACAGCTTAACAGTTTGTA+GGG 0.496514 1.4:-14562945 MS.gene31860:CDS
TCACATTGACCATCACAGTC+TGG 0.502894 1.4:+14562813 None:intergenic
GAAGAGTTGGGAAGGCAAAC+GGG 0.503318 1.4:-14565495 MS.gene31860:CDS
ATTCTTAGGAGTACTTCATC+AGG 0.510626 1.4:-14564041 MS.gene31860:intron
CTCATTGGCCGGGACCGCCC+AGG 0.512065 1.4:-14565434 MS.gene31860:CDS
TGAACATTTAAATAGGCTCT+AGG 0.512518 1.4:-14565548 MS.gene31860:intron
CCATGATTGTACACTGATCA+AGG 0.512717 1.4:-14566936 MS.gene31860:intron
CACCAGAAACGTCTCGAGGA+TGG 0.514881 1.4:-14562766 MS.gene31860:CDS
CAGCCATTGAGCTCATTGGC+CGG 0.516255 1.4:-14565445 MS.gene31860:CDS
ACCAGAAACGTCTCGAGGAT+GGG 0.518691 1.4:-14562765 MS.gene31860:CDS
ATGCATACCTGTGAAGCATA+AGG 0.520785 1.4:+14564912 None:intergenic
TGAAGGGCCTTATGCTTCAC+AGG 0.521336 1.4:-14564919 MS.gene31860:intron
CCTTGATCAGTGTACAATCA+TGG 0.522276 1.4:+14566936 None:intergenic
AAGCTCAACCACATCCTTCG+TGG 0.529052 1.4:-14565248 MS.gene31860:CDS
TCAATATTGGGCCTGAAAGA+GGG 0.529751 1.4:+14565074 None:intergenic
TATCAGCAAACAACATTTGG+TGG 0.529977 1.4:+14565150 None:intergenic
TTCTATGTGAGAGATGCATA+TGG 0.536976 1.4:-14562884 MS.gene31860:CDS
TAGTGTGAGATGCAAAGATC+GGG 0.541924 1.4:-14565015 MS.gene31860:CDS
TATCCTTTGCGCACAGCTCA+AGG 0.542089 1.4:+14563008 None:intergenic
GATGGTAGTTGGTTTATGGA+TGG 0.543454 1.4:-14566309 MS.gene31860:intron
GATATCTCAGACAAAAGACC+TGG 0.545024 1.4:+14565416 None:intergenic
TACTTCATCAGGCACGTGGA+TGG 0.545747 1.4:-14564030 MS.gene31860:CDS
GTGTCAACCATAGGAGAGAA+AGG 0.546097 1.4:-14562917 MS.gene31860:CDS
CCTTCTGTCCATGTGGGTGA+AGG 0.546823 1.4:+14565175 None:intergenic
AGCCATTGAGCTCATTGGCC+GGG 0.553592 1.4:-14565444 MS.gene31860:CDS
AAGTTAACAGGGAACCTTGG+AGG 0.558483 1.4:+14567400 None:intergenic
GTCCCGGCCAATGAGCTCAA+TGG 0.558624 1.4:+14565442 None:intergenic
TAAATAGGCTCTAGGACCAA+AGG 0.562311 1.4:-14565540 MS.gene31860:intron
AAGGGCCGCAAGAGCCCAGA+AGG 0.562789 1.4:-14565521 MS.gene31860:CDS
GGATGCACACTTGACACTGA+AGG 0.564728 1.4:-14564009 MS.gene31860:CDS
ATGCCTCCATCTCATCTGAA+GGG 0.564762 1.4:-14564935 MS.gene31860:CDS
GCTTGCTGTCTGAAGTGACT+AGG 0.566444 1.4:-14562979 MS.gene31860:CDS
GGGTTTCACCTTCACCCACA+TGG 0.568310 1.4:-14565183 MS.gene31860:CDS
TCACACCTTCTGGGCTCTTG+CGG 0.569295 1.4:+14565516 None:intergenic
AAATAGGCTCTAGGACCAAA+GGG 0.571475 1.4:-14565539 MS.gene31860:intron
CCTCACAACCACGAAGGATG+TGG 0.572226 1.4:+14565240 None:intergenic
CTTTGGTAATTATGAAGTCA+AGG 0.574350 1.4:+14566346 None:intergenic
CCTTCACCCACATGGACAGA+AGG 0.575437 1.4:-14565175 MS.gene31860:CDS
GATGCACACTTGACACTGAA+GGG 0.583904 1.4:-14564008 MS.gene31860:CDS
CCACATCCTTCGTGGTTGTG+AGG 0.585266 1.4:-14565240 MS.gene31860:CDS
AATGGCTGTATGATCACCAA+TGG 0.585858 1.4:+14565460 None:intergenic
TTAGTGTGAGATGCAAAGAT+CGG 0.586475 1.4:-14565016 MS.gene31860:CDS
AGGGCAGGTGTGTCAACCAT+AGG 0.587010 1.4:-14562926 MS.gene31860:CDS
TATTGAAATAGAGCGTATTG+AGG 0.589158 1.4:-14565057 MS.gene31860:CDS
GTGGAGCCTTCTGTCCATGT+GGG 0.594043 1.4:+14565169 None:intergenic
AAAGCTTACATATCTTCTGA+TGG 0.594595 1.4:-14566327 MS.gene31860:CDS
AGTTGGGAAGGCAAACGGGT+TGG 0.597769 1.4:-14565491 MS.gene31860:CDS
CTGTGCGCAAAGGATAGAGT+GGG 0.600715 1.4:-14563001 MS.gene31860:CDS
CAATGATGTTCATATCCACA+GGG 0.601090 1.4:+14562858 None:intergenic
GAAGGTGTGAAGAGTTGGGA+AGG 0.603934 1.4:-14565503 MS.gene31860:CDS
ATAAGGCCCTTCAGATGAGA+TGG 0.605356 1.4:+14564929 None:intergenic
GATAGGGATTATGAGAGTGC+TGG 0.606196 1.4:-14565131 MS.gene31860:CDS
CACTGAAGGGGAGAAAGAAA+GGG 0.607213 1.4:-14563995 MS.gene31860:CDS
ATGAACAGTATTTCATGTCA+CGG 0.611220 1.4:-14566061 MS.gene31860:intron
TGTGATGGTCAATGTGAAGA+AGG 0.612803 1.4:-14562807 MS.gene31860:CDS
AGAAATTGGCCAGACTGTGA+TGG 0.614374 1.4:-14562822 MS.gene31860:CDS
AGGGATTATGAGAGTGCTGG+TGG 0.616212 1.4:-14565128 MS.gene31860:CDS
TGTCTGCACTCTTACTGACA+TGG 0.618144 1.4:-14564973 MS.gene31860:CDS
GCTGTGCGCAAAGGATAGAG+TGG 0.635425 1.4:-14563002 MS.gene31860:CDS
TATTCAAAGAAGAGTAAGCG+AGG 0.636120 1.4:-14563950 MS.gene31860:intron
GCAACAGAATCAATCCTCCA+AGG 0.646007 1.4:-14567414 MS.gene31860:intron
GGTGGAGCCTTCTGTCCATG+TGG 0.646466 1.4:+14565168 None:intergenic
GTGGGTGAAGGTGAAACCCA+AGG 0.649275 1.4:+14565187 None:intergenic
TTGTGAGGATGATGAGAATG+TGG 0.655874 1.4:-14565225 MS.gene31860:CDS
AGGCCCTTCAGATGAGATGG+AGG 0.656278 1.4:+14564932 None:intergenic
GGAGTACTTCATCAGGCACG+TGG 0.663877 1.4:-14564034 MS.gene31860:CDS
GAGCCTTGAGCTGTGCGCAA+AGG 0.664760 1.4:-14563011 MS.gene31860:CDS
ATGCACACTTGACACTGAAG+GGG 0.665219 1.4:-14564007 MS.gene31860:CDS
ATTGATAGCGTCAATAAACC+CGG 0.669304 1.4:-14566402 MS.gene31860:CDS
TTTCATGTCACGGATCAGCA+AGG 0.670024 1.4:-14566051 MS.gene31860:CDS
ATATCTCAGACAAAAGACCT+GGG 0.673607 1.4:+14565417 None:intergenic
CATCATCCTCACAACCACGA+AGG 0.690210 1.4:+14565234 None:intergenic
AGGATGATGAGAATGTGGCT+CGG 0.697192 1.4:-14565220 MS.gene31860:CDS
ATATTGGGCCTGAAAGAGGG+AGG 0.704198 1.4:+14565077 None:intergenic
TGATGCAACAGATCAAGCTG+TGG 0.710766 1.4:-14565306 MS.gene31860:CDS
AAAGCACCAGAAACGTCTCG+AGG 0.732207 1.4:-14562770 MS.gene31860:CDS
AGATGCATATGGAAACCCTG+TGG 0.774336 1.4:-14562873 MS.gene31860:CDS
TCTCAGACAAAAGACCTGGG+CGG 0.775644 1.4:+14565420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATAAAAAAATTGATA+AGG + chr1.4:14566780-14566799 None:intergenic 10.0%
!! AGTAAATATAAAATAAAGAA+TGG + chr1.4:14565316-14565335 None:intergenic 10.0%
!!! AGAATTAATTAATTATTTTG+AGG + chr1.4:14563275-14563294 None:intergenic 10.0%
!!! TTTACAGTAATATTTTAAAT+CGG - chr1.4:14565360-14565379 MS.gene31860:CDS 10.0%
!!! TTTTTTTTTTTTTCTGTTTT+TGG + chr1.4:14563397-14563416 None:intergenic 10.0%
!! AAATTAATTGACAAAATTTG+AGG - chr1.4:14566068-14566087 MS.gene31860:intron 15.0%
!! AACTATTACTAAAAAAGATA+AGG - chr1.4:14566288-14566307 MS.gene31860:intron 15.0%
!! TTGTTTGCTTAATTAAAATA+TGG - chr1.4:14563966-14563985 MS.gene31860:CDS 15.0%
!!! ATAATTTTATTAGTTTTCGA+CGG - chr1.4:14566828-14566847 MS.gene31860:intron 15.0%
!!! ATTAATTCTAACATTTTTCA+TGG - chr1.4:14563286-14563305 MS.gene31860:intron 15.0%
!!! TTAAACTCTAAAAAAATTGA+CGG - chr1.4:14562849-14562868 MS.gene31860:CDS 15.0%
!!! TTGTTTTCAAATTTTTGTAT+AGG + chr1.4:14565571-14565590 None:intergenic 15.0%
!!! TTTTTTATTCCTAGTAAATT+AGG - chr1.4:14563638-14563657 MS.gene31860:intron 15.0%
!! AAGTTAAATTCAATGATGTT+AGG + chr1.4:14563446-14563465 None:intergenic 20.0%
!! AGGTTCAAAATGTATTAATT+TGG + chr1.4:14566503-14566522 None:intergenic 20.0%
!! ATGAAATAAACTAATGATGA+TGG + chr1.4:14563689-14563708 None:intergenic 20.0%
!! GAAAGAACAAAAATAAGAAT+TGG + chr1.4:14564320-14564339 None:intergenic 20.0%
!! GTTAAATTAAAAGCAAACAA+AGG + chr1.4:14565701-14565720 None:intergenic 20.0%
!! TAGGGACTATAATTAATTAA+TGG - chr1.4:14566933-14566952 MS.gene31860:intron 20.0%
!!! AATTATTGACTTCATTGAAA+AGG - chr1.4:14564171-14564190 MS.gene31860:intron 20.0%
!!! ATTAGTTTATTTCATTTCCA+TGG - chr1.4:14563694-14563713 MS.gene31860:intron 20.0%
!!! CATCATTGAATTTAACTTAT+TGG - chr1.4:14563448-14563467 MS.gene31860:intron 20.0%
!!! GTTATTTTTTTGTCAAAACA+AGG + chr1.4:14563050-14563069 None:intergenic 20.0%
!!! TAATTTTATTAGTTTTCGAC+GGG - chr1.4:14566829-14566848 MS.gene31860:intron 20.0%
!!! TAGACAATCATGATTTTATA+AGG + chr1.4:14566749-14566768 None:intergenic 20.0%
!!! TTAAATATTTTGCAGATCAT+TGG + chr1.4:14562833-14562852 None:intergenic 20.0%
! AAAACCTAAAAACAAGATGA+AGG - chr1.4:14565593-14565612 MS.gene31860:intron 25.0%
! AACAGACTCTAAATATCAAT+TGG - chr1.4:14564546-14564565 MS.gene31860:intron 25.0%
! AATACGCTCTATTTCAATAT+TGG + chr1.4:14565120-14565139 None:intergenic 25.0%
! AATTTCTTTATTCCTTCCTT+TGG + chr1.4:14565489-14565508 None:intergenic 25.0%
! ATAATAATATGCATGATAGC+TGG + chr1.4:14567007-14567026 None:intergenic 25.0%
! ATACGCTCTATTTCAATATT+GGG + chr1.4:14565119-14565138 None:intergenic 25.0%
! CTAGTTGTGAACATTTAAAT+AGG - chr1.4:14564623-14564642 MS.gene31860:intron 25.0%
! GTTCTTGTAAAAAAGACTAA+GGG - chr1.4:14565518-14565537 MS.gene31860:CDS 25.0%
! TCAAGTAAGACAAATCTTTA+GGG - chr1.4:14565383-14565402 MS.gene31860:CDS 25.0%
! TGTTCTTGTAAAAAAGACTA+AGG - chr1.4:14565517-14565536 MS.gene31860:CDS 25.0%
! TTGTTGCATATGCAAATATT+GGG - chr1.4:14563996-14564015 MS.gene31860:CDS 25.0%
! TTTGTTGCATATGCAAATAT+TGG - chr1.4:14563995-14564014 MS.gene31860:CDS 25.0%
!! AAAACAAGCATTGTATTTCA+AGG + chr1.4:14562805-14562824 None:intergenic 25.0%
!! AAACAAGCATTGTATTTCAA+GGG + chr1.4:14562804-14562823 None:intergenic 25.0%
!! AGTAACAGTATGATGATTTT+TGG - chr1.4:14562888-14562907 MS.gene31860:CDS 25.0%
!! ATGTTTGAAGTATGTAGTAA+GGG - chr1.4:14566010-14566029 MS.gene31860:CDS 25.0%
!! ATTTTATAGCTACTCTAGTT+TGG - chr1.4:14565754-14565773 MS.gene31860:intron 25.0%
!! GACATGCTTTTAATAAGATA+TGG - chr1.4:14564225-14564244 MS.gene31860:intron 25.0%
!! TATGTTTGAAGTATGTAGTA+AGG - chr1.4:14566009-14566028 MS.gene31860:CDS 25.0%
!! TGAAGGTTTTGCAATTAAAA+CGG - chr1.4:14565610-14565629 MS.gene31860:intron 25.0%
!! TTGATATTTAGAGTCTGTTT+AGG + chr1.4:14564545-14564564 None:intergenic 25.0%
!! TTTCTGAAAAAGTTGATCAT+AGG + chr1.4:14563507-14563526 None:intergenic 25.0%
!! TTTTGCAATTAAAACGGAAA+AGG - chr1.4:14565616-14565635 MS.gene31860:intron 25.0%
!!! AAAACCTTCATCTTGTTTTT+AGG + chr1.4:14565600-14565619 None:intergenic 25.0%
!!! TAAGTTGATGTAATATCGAA+TGG - chr1.4:14563731-14563750 MS.gene31860:intron 25.0%
AAAAGATAAGGATGAACTTC+TGG - chr1.4:14566300-14566319 MS.gene31860:intron 30.0%
AAAGCTTACATATCTTCTGA+TGG - chr1.4:14563851-14563870 MS.gene31860:intron 30.0%
AACTATGAACACTATCAGTA+AGG + chr1.4:14564473-14564492 None:intergenic 30.0%
AAGAACACATATGAAGCTAT+GGG + chr1.4:14566407-14566426 None:intergenic 30.0%
AAGTCTTTCATGCTCTATTA+TGG - chr1.4:14566341-14566360 MS.gene31860:CDS 30.0%
AATCATGCTACCATATACTT+AGG + chr1.4:14564295-14564314 None:intergenic 30.0%
AATGTTTGGCCTAATTTACT+AGG + chr1.4:14563650-14563669 None:intergenic 30.0%
ACTATGAACACTATCAGTAA+GGG + chr1.4:14564472-14564491 None:intergenic 30.0%
AGTAAATTAGGCCAAACATT+AGG - chr1.4:14563650-14563669 MS.gene31860:intron 30.0%
AGTTGTCTCATAAACTATCT+TGG + chr1.4:14565897-14565916 None:intergenic 30.0%
ATAACTAGTCCTTTGTTACA+AGG - chr1.4:14563065-14563084 MS.gene31860:intron 30.0%
ATATCTTACAGGACTATAGA+TGG - chr1.4:14566870-14566889 MS.gene31860:intron 30.0%
ATCAGAAGATATGTAAGCTT+TGG + chr1.4:14563852-14563871 None:intergenic 30.0%
ATGAACAGTATTTCATGTCA+CGG - chr1.4:14564117-14564136 MS.gene31860:intron 30.0%
ATTTAGCAATTCACTGAAAG+TGG + chr1.4:14563615-14563634 None:intergenic 30.0%
CAGAATTTATAAACACAGCT+AGG - chr1.4:14564423-14564442 MS.gene31860:intron 30.0%
CCTGTAAGATATAAAAACTG+TGG + chr1.4:14566862-14566881 None:intergenic 30.0%
GATTTGAATGATATTACGTG+TGG + chr1.4:14566676-14566695 None:intergenic 30.0%
GGAAAAGAAACCTAAGTATA+TGG - chr1.4:14564282-14564301 MS.gene31860:intron 30.0%
GGGATAAACAACTTAATCTT+CGG + chr1.4:14565974-14565993 None:intergenic 30.0%
GTCAAGTAAGACAAATCTTT+AGG - chr1.4:14565382-14565401 MS.gene31860:CDS 30.0%
GTTCAAGGATCAAAACATTA+GGG + chr1.4:14565674-14565693 None:intergenic 30.0%
TAGCAAACAAAAATATTGCG+AGG - chr1.4:14565444-14565463 MS.gene31860:CDS 30.0%
TATTGAAATAGAGCGTATTG+AGG - chr1.4:14565121-14565140 MS.gene31860:CDS 30.0%
TATTTCAAGGGAAGTTAACA+GGG + chr1.4:14562792-14562811 None:intergenic 30.0%
TCAAAACATTAGGGTTTGTA+TGG + chr1.4:14565665-14565684 None:intergenic 30.0%
TGAACATTTAAATAGGCTCT+AGG - chr1.4:14564630-14564649 MS.gene31860:intron 30.0%
TGTAATGCACTTACAATCTT+TGG - chr1.4:14564399-14564418 MS.gene31860:intron 30.0%
TGTTCAAGGATCAAAACATT+AGG + chr1.4:14565675-14565694 None:intergenic 30.0%
TTATCTACATGTGAAAACCA+TGG + chr1.4:14563714-14563733 None:intergenic 30.0%
TTGTTGATGTGGTAATTCTT+AGG - chr1.4:14566123-14566142 MS.gene31860:intron 30.0%
! ATTAAGTTGTTTATCCCATC+AGG - chr1.4:14565977-14565996 MS.gene31860:intron 30.0%
! CCACAGTTTTTATATCTTAC+AGG - chr1.4:14566859-14566878 MS.gene31860:intron 30.0%
! CTTTGGTAATTATGAAGTCA+AGG + chr1.4:14563835-14563854 None:intergenic 30.0%
! TGAACTATCGTGATTTTGTA+GGG - chr1.4:14566915-14566934 MS.gene31860:intron 30.0%
! TTAAGTTGTTTATCCCATCA+GGG - chr1.4:14565978-14565997 MS.gene31860:intron 30.0%
! TTCACAACTAGTTGATACAA+GGG + chr1.4:14564614-14564633 None:intergenic 30.0%
! TTGAACTATCGTGATTTTGT+AGG - chr1.4:14566914-14566933 MS.gene31860:intron 30.0%
! TTTGAGGTAGAATGACAAAA+TGG - chr1.4:14566084-14566103 MS.gene31860:intron 30.0%
!! AGTAGGCTTTATCTTTGTTT+TGG - chr1.4:14564261-14564280 MS.gene31860:intron 30.0%
!! GCATTTAATTTTATGCTCTG+CGG + chr1.4:14563003-14563022 None:intergenic 30.0%
!! GGTAAAAGTTTTATAGACCA+AGG - chr1.4:14566891-14566910 MS.gene31860:intron 30.0%
AAATCACGATAGTTCAACCT+TGG + chr1.4:14566911-14566930 None:intergenic 35.0%
AACATAGTATTAGTCCCTGA+TGG + chr1.4:14565995-14566014 None:intergenic 35.0%
AAGGGAATTTCTACTGTGTT+TGG + chr1.4:14564454-14564473 None:intergenic 35.0%
AAGTGCATTACACACTCAAA+AGG + chr1.4:14564391-14564410 None:intergenic 35.0%
AATGGTACGGTATACATACA+TGG - chr1.4:14566548-14566567 MS.gene31860:intron 35.0%
ACATAGTATTAGTCCCTGAT+GGG + chr1.4:14565994-14566013 None:intergenic 35.0%
ACATATCTTCTGATGGTAGT+TGG - chr1.4:14563858-14563877 MS.gene31860:intron 35.0%
AGAACACATATGAAGCTATG+GGG + chr1.4:14566406-14566425 None:intergenic 35.0%
AGAACAGCTTAACAGTTTGT+AGG - chr1.4:14567232-14567251 MS.gene31860:intron 35.0%
AGCATGTCAGATAAAAATCG+AGG + chr1.4:14564213-14564232 None:intergenic 35.0%
AGTCTGTTTAGGAAATAGCA+GGG + chr1.4:14564534-14564553 None:intergenic 35.0%
AGTGCATTACACACTCAAAA+GGG + chr1.4:14564390-14564409 None:intergenic 35.0%
ATAGAGCGTATTGAGGAAAA+AGG - chr1.4:14565128-14565147 MS.gene31860:CDS 35.0%
ATATCTCAGACAAAAGACCT+GGG + chr1.4:14564764-14564783 None:intergenic 35.0%
ATTTAGTCCTTTCTCTCCTA+TGG + chr1.4:14567271-14567290 None:intergenic 35.0%
CAATGATGTTCATATCCACA+GGG + chr1.4:14567323-14567342 None:intergenic 35.0%
CCATATACCTCAATTTCACA+AGG + chr1.4:14563135-14563154 None:intergenic 35.0%
CCTTGTGAAATTGAGGTATA+TGG - chr1.4:14563132-14563151 MS.gene31860:intron 35.0%
CTAGAGTAAGCTTCTTCTTT+GGG - chr1.4:14567436-14567455 MS.gene31860:CDS 35.0%
CTATTATGGAACTTGGTTTC+TGG - chr1.4:14566355-14566374 MS.gene31860:CDS 35.0%
CTGTTGCATCATTGACATAA+AGG + chr1.4:14564863-14564882 None:intergenic 35.0%
GAACAGCTTAACAGTTTGTA+GGG - chr1.4:14567233-14567252 MS.gene31860:intron 35.0%
GAAGAACACATATGAAGCTA+TGG + chr1.4:14566408-14566427 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG - chr1.4:14565781-14565800 MS.gene31860:intron 35.0%
GTATTTCAAGGGAAGTTAAC+AGG + chr1.4:14562793-14562812 None:intergenic 35.0%
GTGAAATTGAGGTATATGGT+GGG - chr1.4:14563136-14563155 MS.gene31860:intron 35.0%
TAGCACTTGTGAAACTGTTT+GGG - chr1.4:14565807-14565826 MS.gene31860:intron 35.0%
TATCAGCAAACAACATTTGG+TGG + chr1.4:14565031-14565050 None:intergenic 35.0%
TATTCAAAGAAGAGTAAGCG+AGG - chr1.4:14566228-14566247 MS.gene31860:intron 35.0%
TCAATGATGTTCATATCCAC+AGG + chr1.4:14567324-14567343 None:intergenic 35.0%
TCATACTCAGGATCAAAGTA+TGG + chr1.4:14562736-14562755 None:intergenic 35.0%
TCATGCTCTATTATGGAACT+TGG - chr1.4:14566348-14566367 MS.gene31860:CDS 35.0%
TCGAGCATAAATATGACTGA+TGG + chr1.4:14566984-14567003 None:intergenic 35.0%
TCTCATAAACTATCTTGGAG+AGG + chr1.4:14565892-14565911 None:intergenic 35.0%
TGTAGACTAAGTTGTTGATG+TGG - chr1.4:14566112-14566131 MS.gene31860:intron 35.0%
TGTGAAATTGAGGTATATGG+TGG - chr1.4:14563135-14563154 MS.gene31860:intron 35.0%
TTACACTCCTTGTGAAATTG+AGG - chr1.4:14563125-14563144 MS.gene31860:intron 35.0%
TTAGCACTTGTGAAACTGTT+TGG - chr1.4:14565806-14565825 MS.gene31860:intron 35.0%
TTAGTGTGAGATGCAAAGAT+CGG - chr1.4:14565162-14565181 MS.gene31860:CDS 35.0%
TTCTATGTGAGAGATGCATA+TGG - chr1.4:14567294-14567313 MS.gene31860:intron 35.0%
! ACCAAATGTTGTTTGCTGAT+AGG - chr1.4:14565030-14565049 MS.gene31860:CDS 35.0%
! ATAGCTACTCTAGTTTGGAT+TGG - chr1.4:14565759-14565778 MS.gene31860:intron 35.0%
! ATGGTAGCAATGCTTTTAGT+AGG - chr1.4:14564244-14564263 MS.gene31860:intron 35.0%
! CCAAATGTTGTTTGCTGATA+GGG - chr1.4:14565031-14565050 MS.gene31860:CDS 35.0%
! GTTCACAACTAGTTGATACA+AGG + chr1.4:14564615-14564634 None:intergenic 35.0%
! TTCTGATGGTAGTTGGTTTA+TGG - chr1.4:14563865-14563884 MS.gene31860:intron 35.0%
! TTTGAAGTATGTAGTAAGGG+AGG - chr1.4:14566013-14566032 MS.gene31860:CDS 35.0%
!! AAACTCTGTTTCTAATTCGC+AGG - chr1.4:14563196-14563215 MS.gene31860:intron 35.0%
!! AACTCTGTTTCTAATTCGCA+GGG - chr1.4:14563197-14563216 MS.gene31860:intron 35.0%
!! ATTCTTAGGAGTACTTCATC+AGG - chr1.4:14566137-14566156 MS.gene31860:intron 35.0%
!! ATTGATAGCGTCAATAAACC+CGG - chr1.4:14563776-14563795 MS.gene31860:intron 35.0%
!! TTCTGGCTTAATGTTTCTCT+TGG - chr1.4:14566372-14566391 MS.gene31860:CDS 35.0%
!! TTGTTTTGTTGCGAATGGTA+CGG - chr1.4:14566535-14566554 MS.gene31860:intron 35.0%
!!! GAGGAATTTTTTAGTTCAGC+TGG - chr1.4:14565463-14565482 MS.gene31860:CDS 35.0%
!!! TCACTGAAAGTGGTTTTAAC+AGG + chr1.4:14563605-14563624 None:intergenic 35.0%
AATGGCTGTATGATCACCAA+TGG + chr1.4:14564721-14564740 None:intergenic 40.0%
AGCACGAATGTGTATGTTGT+AGG + chr1.4:14564040-14564059 None:intergenic 40.0%
ATGCATACCTGTGAAGCATA+AGG + chr1.4:14565269-14565288 None:intergenic 40.0%
ATGGTCAGATACAATCTGAG+TGG + chr1.4:14566583-14566602 None:intergenic 40.0%
ATGTGATTGCAGCTGAAGTT+TGG - chr1.4:14564811-14564830 MS.gene31860:intron 40.0%
CAGAAGAAGTTGCTCGTTTA+TGG - chr1.4:14563172-14563191 MS.gene31860:intron 40.0%
CAGCTGCAATCACATTGAAT+TGG + chr1.4:14564806-14564825 None:intergenic 40.0%
CATAAACGAGCAACTTCTTC+TGG + chr1.4:14563174-14563193 None:intergenic 40.0%
CATCGTATCCACCAATGAAT+CGG - chr1.4:14566600-14566619 MS.gene31860:intron 40.0%
CCATGATTGTACACTGATCA+AGG - chr1.4:14563242-14563261 MS.gene31860:intron 40.0%
CCCTATCAGCAAACAACATT+TGG + chr1.4:14565034-14565053 None:intergenic 40.0%
CCTTGATCAGTGTACAATCA+TGG + chr1.4:14563245-14563264 None:intergenic 40.0%
CTGAAGTTTGGACTCATAAC+AGG - chr1.4:14564823-14564842 MS.gene31860:intron 40.0%
GAATGTGTATGTTGTAGGCA+AGG + chr1.4:14564035-14564054 None:intergenic 40.0%
GAGTCTGTTTAGGAAATAGC+AGG + chr1.4:14564535-14564554 None:intergenic 40.0%
GATATCTCAGACAAAAGACC+TGG + chr1.4:14564765-14564784 None:intergenic 40.0%
GATATTACGTGTGGAGCATA+AGG + chr1.4:14566667-14566686 None:intergenic 40.0%
GCAAACAAAGGATGTGTTCA+AGG + chr1.4:14565689-14565708 None:intergenic 40.0%
GCGAATCAAGACTCAAAATG+CGG + chr1.4:14563312-14563331 None:intergenic 40.0%
GCTAGAGTAAGCTTCTTCTT+TGG - chr1.4:14567435-14567454 MS.gene31860:CDS 40.0%
GTGCATTACACACTCAAAAG+GGG + chr1.4:14564389-14564408 None:intergenic 40.0%
TAGTGTGAGATGCAAAGATC+GGG - chr1.4:14565163-14565182 MS.gene31860:CDS 40.0%
TCAATATTGGGCCTGAAAGA+GGG + chr1.4:14565107-14565126 None:intergenic 40.0%
TGACATCGACCTTGTAACAA+AGG + chr1.4:14563077-14563096 None:intergenic 40.0%
TGTAACCTATGACACCACTA+GGG + chr1.4:14563110-14563129 None:intergenic 40.0%
TGTGATGGTCAATGTGAAGA+AGG - chr1.4:14567371-14567390 MS.gene31860:intron 40.0%
TTATGAAGTCAAGGTCTGTC+AGG + chr1.4:14563826-14563845 None:intergenic 40.0%
TTCAATATTGGGCCTGAAAG+AGG + chr1.4:14565108-14565127 None:intergenic 40.0%
TTGCTGAAGTTCTCATACTC+AGG + chr1.4:14562748-14562767 None:intergenic 40.0%
TTGTGAGGATGATGAGAATG+TGG - chr1.4:14564953-14564972 MS.gene31860:CDS 40.0%
TTTGGTCAACAAAAAGCCAC+AGG + chr1.4:14563379-14563398 None:intergenic 40.0%
! AGTCTTGATTCGCTATCTGA+AGG - chr1.4:14563319-14563338 MS.gene31860:intron 40.0%
! CTTCTTCTTTGGGAACTTGT+TGG - chr1.4:14567446-14567465 MS.gene31860:CDS 40.0%
! GATGGTAGTTGGTTTATGGA+TGG - chr1.4:14563869-14563888 MS.gene31860:intron 40.0%
!! AAATAGGCTCTAGGACCAAA+GGG - chr1.4:14564639-14564658 MS.gene31860:intron 40.0%
!! AACTAATGATGATGGCCACT+TGG + chr1.4:14563681-14563700 None:intergenic 40.0%
!! ACTAATGATGATGGCCACTT+GGG + chr1.4:14563680-14563699 None:intergenic 40.0%
!! GAAGCACTGCGTAAAGAAAT+TGG - chr1.4:14567342-14567361 MS.gene31860:intron 40.0%
!! TAAATAGGCTCTAGGACCAA+AGG - chr1.4:14564638-14564657 MS.gene31860:intron 40.0%
!! TCTTTGGGAACTTGTTGGAA+AGG - chr1.4:14567451-14567470 MS.gene31860:CDS 40.0%
!!! TCTGCTTGTTTTGTTGCGAA+TGG - chr1.4:14566530-14566549 MS.gene31860:intron 40.0%
!!! TTTTTAGTTCAGCTGGCCAA+AGG - chr1.4:14565470-14565489 MS.gene31860:CDS 40.0%
AAACATTAGGCTACCCCAAG+TGG - chr1.4:14563663-14563682 MS.gene31860:intron 45.0%
AAGTTAACAGGGAACCTTGG+AGG + chr1.4:14562781-14562800 None:intergenic 45.0%
ACACTGAAGGGGAGAAAGAA+AGG - chr1.4:14566182-14566201 MS.gene31860:intron 45.0%
ACTTGGGGTAGCCTAATGTT+TGG + chr1.4:14563664-14563683 None:intergenic 45.0%
AGAAATTGGCCAGACTGTGA+TGG - chr1.4:14567356-14567375 MS.gene31860:intron 45.0%
AGATGCATATGGAAACCCTG+TGG - chr1.4:14567305-14567324 MS.gene31860:intron 45.0%
AGCTTAACAGTTTGTAGGGC+AGG - chr1.4:14567237-14567256 MS.gene31860:intron 45.0%
AGGATGATGAGAATGTGGCT+CGG - chr1.4:14564958-14564977 MS.gene31860:CDS 45.0%
ATAAGGCCCTTCAGATGAGA+TGG + chr1.4:14565252-14565271 None:intergenic 45.0%
ATAGCAGGGTAGATACTAGC+AGG + chr1.4:14564520-14564539 None:intergenic 45.0%
ATCCACCAATGAATCGGTGA+CGG - chr1.4:14566606-14566625 MS.gene31860:intron 45.0%
ATGCACACTTGACACTGAAG+GGG - chr1.4:14566171-14566190 MS.gene31860:intron 45.0%
ATGCCTCCATCTCATCTGAA+GGG - chr1.4:14565243-14565262 MS.gene31860:CDS 45.0%
CAAAACAAGCAGATAGCTGC+AGG + chr1.4:14566523-14566542 None:intergenic 45.0%
CAAGTGACGTAAAACTCCAG+TGG + chr1.4:14563353-14563372 None:intergenic 45.0%
CAATAAACCCGGAATTCTGC+TGG - chr1.4:14563787-14563806 MS.gene31860:intron 45.0%
CACTGAAGGGGAGAAAGAAA+GGG - chr1.4:14566183-14566202 MS.gene31860:intron 45.0%
CATACAGCCATTGAGCTCAT+TGG - chr1.4:14564729-14564748 MS.gene31860:intron 45.0%
GATGCACACTTGACACTGAA+GGG - chr1.4:14566170-14566189 MS.gene31860:intron 45.0%
GCAACAGAATCAATCCTCCA+AGG - chr1.4:14562764-14562783 MS.gene31860:CDS 45.0%
GTCATCAGTTCAATCCCTAG+TGG - chr1.4:14563093-14563112 MS.gene31860:intron 45.0%
GTCGTTACCATTGATCCTCT+GGG - chr1.4:14567127-14567146 MS.gene31860:intron 45.0%
GTGTAACCTATGACACCACT+AGG + chr1.4:14563111-14563130 None:intergenic 45.0%
GTGTCAACCATAGGAGAGAA+AGG - chr1.4:14567261-14567280 MS.gene31860:intron 45.0%
TACACACTCAAAAGGGGAGA+CGG + chr1.4:14564383-14564402 None:intergenic 45.0%
TCACATTGACCATCACAGTC+TGG + chr1.4:14567368-14567387 None:intergenic 45.0%
TCTAATTCGCAGGGTCTCTA+TGG - chr1.4:14563206-14563225 MS.gene31860:intron 45.0%
TGAAGAGTTGGGAAGGCAAA+CGG - chr1.4:14564682-14564701 MS.gene31860:intron 45.0%
TGAGGAAAAAGGCTACTCAG+TGG - chr1.4:14565139-14565158 MS.gene31860:CDS 45.0%
TGATGCAACAGATCAAGCTG+TGG - chr1.4:14564872-14564891 MS.gene31860:intron 45.0%
TGTCGTTACCATTGATCCTC+TGG - chr1.4:14567126-14567145 MS.gene31860:intron 45.0%
TGTCTGCACTCTTACTGACA+TGG - chr1.4:14565205-14565224 MS.gene31860:CDS 45.0%
TGTTGTAGGCAAGGTTTGCA+TGG + chr1.4:14564026-14564045 None:intergenic 45.0%
TTTACGTCACTTGTGTCCTG+TGG - chr1.4:14563360-14563379 MS.gene31860:intron 45.0%
TTTCATGTCACGGATCAGCA+AGG - chr1.4:14564127-14564146 MS.gene31860:intron 45.0%
! AATGAATCGGTGACGGTTGA+TGG - chr1.4:14566613-14566632 MS.gene31860:intron 45.0%
! CGATTCATTGGTGGATACGA+TGG + chr1.4:14566602-14566621 None:intergenic 45.0%
! GATAGGGATTATGAGAGTGC+TGG - chr1.4:14565047-14565066 MS.gene31860:CDS 45.0%
!! ATCAACCGTCACCGATTCAT+TGG + chr1.4:14566614-14566633 None:intergenic 45.0%
!! CTAATGATGATGGCCACTTG+GGG + chr1.4:14563679-14563698 None:intergenic 45.0%
!! TCAATCCCTAGTGGTGTCAT+AGG - chr1.4:14563102-14563121 MS.gene31860:intron 45.0%
AAGCTCAACCACATCCTTCG+TGG - chr1.4:14564930-14564949 MS.gene31860:CDS 50.0%
ACACACTCAAAAGGGGAGAC+GGG + chr1.4:14564382-14564401 None:intergenic 50.0%
ACCAGAAACGTCTCGAGGAT+GGG - chr1.4:14567413-14567432 MS.gene31860:intron 50.0%
ACCATTGATCCTCTGGGTGA+TGG - chr1.4:14567133-14567152 MS.gene31860:intron 50.0%
ACGACTTCCAGCAGAATTCC+GGG + chr1.4:14563797-14563816 None:intergenic 50.0%
AGACGGGTGTAGTGCTTAAC+TGG + chr1.4:14564366-14564385 None:intergenic 50.0%
ATATTGGGCCTGAAAGAGGG+AGG + chr1.4:14565104-14565123 None:intergenic 50.0%
CACGACTTCCAGCAGAATTC+CGG + chr1.4:14563798-14563817 None:intergenic 50.0%
CATCATCCTCACAACCACGA+AGG + chr1.4:14564947-14564966 None:intergenic 50.0%
CATGCCTCCATCTCATCTGA+AGG - chr1.4:14565242-14565261 MS.gene31860:CDS 50.0%
CATTGAATTGGAAGCTCGCC+AGG + chr1.4:14564794-14564813 None:intergenic 50.0%
CCCAACTCTTCACACCTTCT+GGG + chr1.4:14564674-14564693 None:intergenic 50.0%
CTGTGCGCAAAGGATAGAGT+GGG - chr1.4:14567177-14567196 MS.gene31860:intron 50.0%
GAAGAGTTGGGAAGGCAAAC+GGG - chr1.4:14564683-14564702 MS.gene31860:intron 50.0%
GACGTAAAACTCCAGTGGCT+AGG + chr1.4:14563348-14563367 None:intergenic 50.0%
GGATGCACACTTGACACTGA+AGG - chr1.4:14566169-14566188 MS.gene31860:intron 50.0%
GGGAAGTTAACAGGGAACCT+TGG + chr1.4:14562784-14562803 None:intergenic 50.0%
GGTGAAACCCAAGGAGAAAC+TGG + chr1.4:14564985-14565004 None:intergenic 50.0%
TACTTCATCAGGCACGTGGA+TGG - chr1.4:14566148-14566167 MS.gene31860:intron 50.0%
TAGTTCAGCTGGCCAAAGGA+AGG - chr1.4:14565474-14565493 MS.gene31860:CDS 50.0%
TATCCTTTGCGCACAGCTCA+AGG + chr1.4:14567173-14567192 None:intergenic 50.0%
TCCATCACCCAGAGGATCAA+TGG + chr1.4:14567137-14567156 None:intergenic 50.0%
TCCCAACTCTTCACACCTTC+TGG + chr1.4:14564675-14564694 None:intergenic 50.0%
TCTCAGACAAAAGACCTGGG+CGG + chr1.4:14564761-14564780 None:intergenic 50.0%
TCTGAAGGAAACCTAGCCAC+TGG - chr1.4:14563334-14563353 MS.gene31860:intron 50.0%
TTGACTCTCCTCCCTCTTTC+AGG - chr1.4:14565093-14565112 MS.gene31860:CDS 50.0%
! AAAGCACCAGAAACGTCTCG+AGG - chr1.4:14567408-14567427 MS.gene31860:intron 50.0%
! CCCAGAAGGTGTGAAGAGTT+GGG - chr1.4:14564671-14564690 MS.gene31860:intron 50.0%
! GAAGGTGTGAAGAGTTGGGA+AGG - chr1.4:14564675-14564694 MS.gene31860:intron 50.0%
! GTCTGAGATATCAGCTGTCC+TGG - chr1.4:14564773-14564792 MS.gene31860:intron 50.0%
! TGAAGGGCCTTATGCTTCAC+AGG - chr1.4:14565259-14565278 MS.gene31860:CDS 50.0%
!! AACCGTCACCGATTCATTGG+TGG + chr1.4:14566611-14566630 None:intergenic 50.0%
!! AGGGATTATGAGAGTGCTGG+TGG - chr1.4:14565050-14565069 MS.gene31860:CDS 50.0%
!! CGTTTCTGGTGCTTTGGTGT+TGG + chr1.4:14567403-14567422 None:intergenic 50.0%
!! GCTTGCTGTCTGAAGTGACT+AGG - chr1.4:14567199-14567218 MS.gene31860:intron 50.0%
!! TCGAGACGTTTCTGGTGCTT+TGG + chr1.4:14567409-14567428 None:intergenic 50.0%
AGCCATTGAGCTCATTGGCC+GGG - chr1.4:14564734-14564753 MS.gene31860:intron 55.0%
AGGCCCTTCAGATGAGATGG+AGG + chr1.4:14565249-14565268 None:intergenic 55.0%
AGGGCAGGTGTGTCAACCAT+AGG - chr1.4:14567252-14567271 MS.gene31860:intron 55.0%
AGTTGGGAAGGCAAACGGGT+TGG - chr1.4:14564687-14564706 MS.gene31860:intron 55.0%
CACCAGAAACGTCTCGAGGA+TGG - chr1.4:14567412-14567431 MS.gene31860:intron 55.0%
CAGCCATTGAGCTCATTGGC+CGG - chr1.4:14564733-14564752 MS.gene31860:intron 55.0%
CCACATCCTTCGTGGTTGTG+AGG - chr1.4:14564938-14564957 MS.gene31860:CDS 55.0%
CCTCACAACCACGAAGGATG+TGG + chr1.4:14564941-14564960 None:intergenic 55.0%
CCTTCACCCACATGGACAGA+AGG - chr1.4:14565003-14565022 MS.gene31860:CDS 55.0%
CCTTCTGTCCATGTGGGTGA+AGG + chr1.4:14565006-14565025 None:intergenic 55.0%
GCTCGGACCAGTTTCTCCTT+GGG - chr1.4:14564975-14564994 MS.gene31860:CDS 55.0%
GCTGTGCGCAAAGGATAGAG+TGG - chr1.4:14567176-14567195 MS.gene31860:intron 55.0%
GGGTTTCACCTTCACCCACA+TGG - chr1.4:14564995-14565014 MS.gene31860:CDS 55.0%
GTGGAGCCTTCTGTCCATGT+GGG + chr1.4:14565012-14565031 None:intergenic 55.0%
GTGGGTGAAGGTGAAACCCA+AGG + chr1.4:14564994-14565013 None:intergenic 55.0%
TCACACCTTCTGGGCTCTTG+CGG + chr1.4:14564665-14564684 None:intergenic 55.0%
! GCCCAGAAGGTGTGAAGAGT+TGG - chr1.4:14564670-14564689 MS.gene31860:intron 55.0%
! GGAGTACTTCATCAGGCACG+TGG - chr1.4:14566144-14566163 MS.gene31860:intron 55.0%
!! ATCCTCTGGGTGATGGACAC+AGG - chr1.4:14567140-14567159 MS.gene31860:intron 55.0%
!! CGGGTTGGCATTCACTCCAT+TGG - chr1.4:14564702-14564721 MS.gene31860:intron 55.0%
!! TCCTCTGGGTGATGGACACA+GGG - chr1.4:14567141-14567160 MS.gene31860:intron 55.0%
!! TCTGGTGCTTTGGTGTTGGC+TGG + chr1.4:14567399-14567418 None:intergenic 55.0%
ACAAAAGACCTGGGCGGTCC+CGG + chr1.4:14564755-14564774 None:intergenic 60.0%
ACCCTGTGTCCATCACCCAG+AGG + chr1.4:14567145-14567164 None:intergenic 60.0%
GAGCCTTGAGCTGTGCGCAA+AGG - chr1.4:14567167-14567186 MS.gene31860:intron 60.0%
GCCCATCCTCGAGACGTTTC+TGG + chr1.4:14567417-14567436 None:intergenic 60.0%
GGCTCGGACCAGTTTCTCCT+TGG - chr1.4:14564974-14564993 MS.gene31860:CDS 60.0%
GGTGGAGCCTTCTGTCCATG+TGG + chr1.4:14565013-14565032 None:intergenic 60.0%
GTCCCGGCCAATGAGCTCAA+TGG + chr1.4:14564739-14564758 None:intergenic 60.0%
AAGGGCCGCAAGAGCCCAGA+AGG - chr1.4:14564657-14564676 MS.gene31860:intron 65.0%
TCTGGGCTCTTGCGGCCCTT+TGG + chr1.4:14564657-14564676 None:intergenic 65.0%
CTCATTGGCCGGGACCGCCC+AGG - chr1.4:14564744-14564763 MS.gene31860:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 14562715 14567485 14562715 ID=MS.gene31860
chr1.4 mRNA 14562715 14567485 14562715 ID=MS.gene31860.t1;Parent=MS.gene31860
chr1.4 exon 14567415 14567485 14567415 ID=MS.gene31860.t1.exon1;Parent=MS.gene31860.t1
chr1.4 CDS 14567415 14567485 14567415 ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1
chr1.4 exon 14566937 14566982 14566937 ID=MS.gene31860.t1.exon2;Parent=MS.gene31860.t1
chr1.4 CDS 14566937 14566982 14566937 ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1
chr1.4 exon 14566310 14566424 14566310 ID=MS.gene31860.t1.exon3;Parent=MS.gene31860.t1
chr1.4 CDS 14566310 14566424 14566310 ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1
chr1.4 exon 14566008 14566075 14566008 ID=MS.gene31860.t1.exon4;Parent=MS.gene31860.t1
chr1.4 CDS 14566008 14566075 14566008 ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1
chr1.4 exon 14564920 14565555 14564920 ID=MS.gene31860.t1.exon5;Parent=MS.gene31860.t1
chr1.4 CDS 14564920 14565555 14564920 ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1
chr1.4 exon 14563951 14564055 14563951 ID=MS.gene31860.t1.exon6;Parent=MS.gene31860.t1
chr1.4 CDS 14563951 14564055 14563951 ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1
chr1.4 exon 14562715 14563038 14562715 ID=MS.gene31860.t1.exon7;Parent=MS.gene31860.t1
chr1.4 CDS 14562715 14563038 14562715 ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1
Gene Sequence

>MS.gene31860

ATGGCAAAAGTTTGTTGGCCATACTTTGATCCTGAGTATGAGAACTTCAGCAACAGAATCAATCCTCCAAGGTTCCCTGTTAACTTCCCTTGAAATACAATGCTTGTTTTCTTTTCCAATGATCTGCAAAATATTTAAACTCTAAAAAAATTGACGGATATTTTTTTTTAATAAGTAACAGTATGATGATTTTTGGCATTATCATTATGAATATTTATATATTATCATATTTTCAGTGTCAGTTGACTGCTTTAACATAATCTTAAACGTCAAAAAGCGAAAGAACCGCAGAGCATAAAATTAAATGCTTCTTTTTGTTCATAATGACTAGTCCTTGTTTTGACAAAAAAATAACTAGTCCTTTGTTACAAGGTCGATGTCATCAGTTCAATCCCTAGTGGTGTCATAGGTTACACTCCTTGTGAAATTGAGGTATATGGTGGGAATTTGTAATATCCAGAAGAAGTTGCTCGTTTATGGTAAACTCTGTTTCTAATTCGCAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACACTGATCAAGGTATAATTCCTCAAAATAATTAATTAATTCTAACATTTTTCATGGCCGCATTTTGAGTCTTGATTCGCTATCTGAAGGAAACCTAGCCACTGGAGTTTTACGTCACTTGTGTCCTGTGGCTTTTTGTTGACCAAAAACAGAAAAAAAAAAAAAATGTGCAACGATGTTTTTTTAACTAACCTAACATCATTGAATTTAACTTATTGGTCTTCAATCAATTCTGACACATTTTCAAGATTGCCTATGATCAACTTTTTCAGAAACTATCTTTAGCAATATTTTCTTTACTAAAACGTAGTTGCAAATTTGAACTGAAAATTTGTTGAGCAGAAAGAACTCCTGTTAAAACCACTTTCAGTGAATTGCTAAATAATTTTTTTATTCCTAGTAAATTAGGCCAAACATTAGGCTACCCCAAGTGGCCATCATCATTAGTTTATTTCATTTCCATGGTTTTCACATGTAGATAAGTTGATGTAATATCGAATGGATTCTTTTTTACAATAATGCAGATTGATAGCGTCAATAAACCCGGAATTCTGCTGGAAGTCGTGCAAATCCTGACAGACCTTGACTTCATAATTACCAAAGCTTACATATCTTCTGATGGTAGTTGGTTTATGGATGGTACGTTTGCAATTGAATTCAAACTTGAACAAGCAATGCATTGATGTATACTACATAGATGTGTCTTGTTCTTGCTTGTTTGCTTAATTAAAATATGGTGATTATTTGTTGCATATGCAAATATTGGGACAACCATGCAAACCTTGCCTACAACATACACATTCGTGCTTAGATGTAACAGAAACTTTCATATTAAAAATTATAGTTAATATGTTTTGTTAATGTAATGAACAGTATTTCATGTCACGGATCAGCAAGGAAAAAAGATAACAGACAACAAAATTATTGACTTCATTGAAAAGGTATACATCTTCTTTCTCCTCGATTTTTATCTGACATGCTTTTAATAAGATATGGTAGCAATGCTTTTAGTAGGCTTTATCTTTGTTTTGGAAAAGAAACCTAAGTATATGGTAGCATGATTTACCAATTCTTATTTTTGTTCTTTCAAATGCATTGATATGAGTTGAAACCAGTTAAGCACTACACCCGTCTCCCCTTTTGAGTGTGTAATGCACTTACAATCTTTGGACAGAATTTATAAACACAGCTAGGAACATCCAAACACAGTAGAAATTCCCTTACTGATAGTGTTCATAGTTCTAAAAGAAACAGTTGATTGAGTTCCTGCTAGTATCTACCCTGCTATTTCCTAAACAGACTCTAAATATCAATTGGATGATTTAATTATATTCTATAATTACATAAAGCAGAATCGCACCCTTGTATCAACTAGTTGTGAACATTTAAATAGGCTCTAGGACCAAAGGGCCGCAAGAGCCCAGAAGGTGTGAAGAGTTGGGAAGGCAAACGGGTTGGCATTCACTCCATTGGTGATCATACAGCCATTGAGCTCATTGGCCGGGACCGCCCAGGTCTTTTGTCTGAGATATCAGCTGTCCTGGCGAGCTTCCAATTCAATGTGATTGCAGCTGAAGTTTGGACTCATAACAGGCGAATAGCATGTGTCCTTTATGTCAATGATGCAACAGATCAAGCTGTGGATGATGATTCAAAAAGATTGTCTCTTATTGACGAGAAGCTCAACCACATCCTTCGTGGTTGTGAGGATGATGAGAATGTGGCTCGGACCAGTTTCTCCTTGGGTTTCACCTTCACCCACATGGACAGAAGGCTCCACCAAATGTTGTTTGCTGATAGGGATTATGAGAGTGCTGGTGGAGTAACAACAGCAACAAATGTTGACTCTCCTCCCTCTTTCAGGCCCAATATTGAAATAGAGCGTATTGAGGAAAAAGGCTACTCAGTGGTTAGTGTGAGATGCAAAGATCGGGCAAAATTGATGTTTGACATTGTCTGCACTCTTACTGACATGGAATATGTTGTTTTTCATGCCTCCATCTCATCTGAAGGGCCTTATGCTTCACAGGTATGCATACATCATTTATTGACAATAATATTCCATTCTTTATTTTATATTTACTGATGACACAGACATGCTTTATTCATTTACAGTAATATTTTAAATCGGTCAAGTAAGACAAATCTTTAGGGTGTTGTTTGTCAAAAATTTGTCTGAATTTTCTGAAAAATAGCAAACAAAAATATTGCGAGGAATTTTTTAGTTCAGCTGGCCAAAGGAAGGAATAAAGAAATTAGTTATCTTGTTCTTGTAAAAAAGACTAAGGGTCTGCTCGTTTATTGTTTTTATGAAGTCCTATACAAAAATTTGAAAACAAGCAAAACCTAAAAACAAGATGAAGGTTTTGCAATTAAAACGGAAAAGGAAATTAGAAAGCATTTTCTAAAGCCATACAAACCCTAATGTTTTGATCCTTGAACACATCCTTTGTTTGCTTTTAATTTAACAGATTAAATTTATGTTTCTTTAAATTTGCTTCAATTTTATAGCTACTCTAGTTTGGATTGGCTTATTTGAGCTTATCTACTGGCATTAGCACTTGTGAAACTGTTTGGGAGAACTTATGAAAACATCTTATGACATGTTCAGAAGCTGTTTTCAGCTTATTTTCATAGCCTCTCCAAGATAGTTTATGAGACAACTTATAGCTTATACAAAAACAATTAACTTTATTATAATAAGTGTTTATGTTATAAGCCGAAGATTAAGTTGTTTATCCCATCAGGGACTAATACTATGTTTGAAGTATGTAGTAAGGGAGGTAACAGAAGTCTTAGTTGAAAAAACTCAAACAAAATTAATTGACAAAATTTGAGGTAGAATGACAAAATGGAGAAATGTAGACTAAGTTGTTGATGTGGTAATTCTTAGGAGTACTTCATCAGGCACGTGGATGGATGCACACTTGACACTGAAGGGGAGAAAGAAAGGGTCATCAAATGCATTGAAGCAGCTATTCAAAGAAGAGTAAGCGAGGTAATGTACAGTTTAAATTTTACGTTTTATGCTACTTTAACTATTACTAAAAAAGATAAGGATGAACTTCTGGTTCTCAACTCTTATCAGTAAGTCTTTCATGCTCTATTATGGAACTTGGTTTCTGGCTTAATGTTTCTCTTGGCATGTATTCCCCATAGCTTCATATGTGTTCTTCTAGCTGAAGTCAGCGATCTACTATTCTTTCTTTTCTTCTCATTTTCTTTAGCAGAAAGTCTTCTGAGTTTGACCAAATTAATACATTTTGAACCTGCAGCTATCTGCTTGTTTTGTTGCGAATGGTACGGTATACATACATGGTGATAAGTTCCACTCAGATTGTATCTGACCATCGTATCCACCAATGAATCGGTGACGGTTGATGGTCTTTTGTCTTCACTAGAGCTTAAGAATCCTTATGCTCCACACGTAATATCATTCAAATCCCTATAACCTCAAAATATGAAGGAAAAAAAATGTTAAAATATATTCTCGTCCTTATAAAATCATGATTGTCTAACTTTAGTCCTTATCAATTTTTTTATTCATTTTTAATCTTTATATTTAACAAAAACTGCATAATTTTATTAGTTTTCGACGGGACTAAAACCACAGTTTTTATATCTTACAGGACTATAGATGGTAAAAGTTTTATAGACCAAGGTTGAACTATCGTGATTTTGTAGGGACTATAATTAATTAATGGTGTTGAATGTGACAAATGCATGTCACCATCAGTCATATTTATGCTCGACCAGCTATCATGCATATTATTATCATCTTCTAAATTTTACATTAATTATTCTTCATACAATAAATAAATAAATAAATTAATTAATTAATGAATGATGAAGAAACTAACACACAAGATGATAGTGTCGTTACCATTGATCCTCTGGGTGATGGACACAGGGTGTGAGCCTTGAGCTGTGCGCAAAGGATAGAGTGGGCTTGCTGTCTGAAGTGACTAGGATTCTACGAGAGAACAGCTTAACAGTTTGTAGGGCAGGTGTGTCAACCATAGGAGAGAAAGGACTAAATGTTTTCTATGTGAGAGATGCATATGGAAACCCTGTGGATATGAACATCATTGAAGCACTGCGTAAAGAAATTGGCCAGACTGTGATGGTCAATGTGAAGAAGGTACCAGCCAACACCAAAGCACCAGAAACGTCTCGAGGATGGGCTAGAGTAAGCTTCTTCTTTGGGAACTTGTTGGAAAGGTTCTTGACTTAA

Protein sequence

>MS.gene31860.t1

MAKVCWPYFDPEYENFSNRINPPRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGSWFMDVFHVTDQQGKKITDNKIIDFIEKALGPKGRKSPEGVKSWEGKRVGIHSIGDHTAIELIGRDRPGLLSEISAVLASFQFNVIAAEVWTHNRRIACVLYVNDATDQAVDDDSKRLSLIDEKLNHILRGCEDDENVARTSFSLGFTFTHMDRRLHQMLFADRDYESAGGVTTATNVDSPPSFRPNIEIERIEEKGYSVVSVRCKDRAKLMFDIVCTLTDMEYVVFHASISSEGPYASQEYFIRHVDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENSLTVCRAGVSTIGEKGLNVFYVRDAYGNPVDMNIIEALRKEIGQTVMVNVKKVPANTKAPETSRGWARVSFFFGNLLERFLT