Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31860.t1 | XP_024631268.1 | 98.5 | 454 | 7 | 0 | 1 | 454 | 1 | 454 | 6.50E-261 | 909.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31860.t1 | O49285 | 69.7 | 462 | 121 | 9 | 1 | 453 | 1 | 452 | 1.5e-181 | 637.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31860.t1 | A0A396JL16 | 98.5 | 454 | 7 | 0 | 1 | 454 | 1 | 454 | 4.7e-261 | 909.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene31860 | MS.gene011698 | PPI |
MS.gene31860 | MS.gene44446 | PPI |
MS.gene31860 | MS.gene015275 | PPI |
MS.gene09616 | MS.gene31860 | PPI |
MS.gene31860 | MS.gene60184 | PPI |
MS.gene31860 | MS.gene43525 | PPI |
MS.gene31860 | MS.gene20314 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31860.t1 | MTR_1g029520 | 98.372 | 430 | 7 | 0 | 25 | 454 | 254 | 683 | 0.0 | 877 |
MS.gene31860.t1 | MTR_3g088885 | 80.617 | 454 | 80 | 6 | 1 | 453 | 1 | 447 | 0.0 | 741 |
MS.gene31860.t1 | MTR_5g047260 | 53.759 | 439 | 183 | 7 | 8 | 446 | 16 | 434 | 1.75e-154 | 446 |
MS.gene31860.t1 | MTR_7g022470 | 51.910 | 445 | 201 | 6 | 9 | 453 | 10 | 441 | 8.97e-152 | 439 |
MS.gene31860.t1 | MTR_7g028050 | 48.764 | 445 | 217 | 6 | 9 | 452 | 1 | 435 | 1.56e-141 | 412 |
MS.gene31860.t1 | MTR_4g101950 | 46.154 | 429 | 191 | 7 | 6 | 426 | 3 | 399 | 1.52e-129 | 382 |
MS.gene31860.t1 | MTR_5g015170 | 46.207 | 435 | 215 | 8 | 10 | 432 | 10 | 437 | 3.30e-127 | 377 |
MS.gene31860.t1 | MTR_5g011580 | 44.371 | 453 | 223 | 8 | 6 | 453 | 3 | 431 | 1.19e-126 | 375 |
MS.gene31860.t1 | MTR_5g047260 | 52.355 | 361 | 156 | 5 | 8 | 368 | 16 | 360 | 3.62e-123 | 363 |
MS.gene31860.t1 | MTR_4g097380 | 42.143 | 420 | 235 | 3 | 7 | 420 | 26 | 443 | 7.17e-116 | 348 |
MS.gene31860.t1 | MTR_5g047260 | 53.398 | 309 | 129 | 4 | 8 | 316 | 16 | 309 | 1.81e-105 | 316 |
MS.gene31860.t1 | MTR_7g028050 | 48.348 | 333 | 166 | 4 | 121 | 452 | 5 | 332 | 5.33e-99 | 300 |
MS.gene31860.t1 | MTR_1g012740 | 49.000 | 100 | 45 | 1 | 283 | 382 | 54 | 147 | 7.50e-24 | 98.2 |
MS.gene31860.t1 | MTR_1g012740 | 35.099 | 151 | 69 | 6 | 6 | 150 | 7 | 134 | 2.46e-16 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31860.t1 | AT1G76990 | 69.697 | 462 | 121 | 9 | 1 | 453 | 1 | 452 | 0.0 | 654 |
MS.gene31860.t1 | AT1G76990 | 69.697 | 462 | 121 | 9 | 1 | 453 | 1 | 452 | 0.0 | 654 |
MS.gene31860.t1 | AT1G76990 | 69.697 | 462 | 121 | 9 | 1 | 453 | 1 | 452 | 0.0 | 654 |
MS.gene31860.t1 | AT1G76990 | 69.697 | 462 | 121 | 9 | 1 | 453 | 1 | 452 | 0.0 | 654 |
MS.gene31860.t1 | AT1G76990 | 69.697 | 462 | 121 | 9 | 1 | 453 | 1 | 452 | 0.0 | 654 |
MS.gene31860.t1 | AT1G69040 | 52.232 | 448 | 191 | 7 | 9 | 450 | 11 | 441 | 4.65e-150 | 435 |
MS.gene31860.t1 | AT1G69040 | 52.232 | 448 | 191 | 7 | 9 | 450 | 7 | 437 | 5.70e-150 | 434 |
MS.gene31860.t1 | AT5G25320 | 49.206 | 441 | 196 | 7 | 1 | 414 | 1 | 440 | 1.65e-145 | 425 |
MS.gene31860.t1 | AT2G03730 | 50.000 | 458 | 205 | 9 | 4 | 451 | 3 | 446 | 3.88e-145 | 422 |
MS.gene31860.t1 | AT2G03730 | 50.000 | 458 | 205 | 9 | 4 | 451 | 3 | 446 | 3.88e-145 | 422 |
MS.gene31860.t1 | AT3G01990 | 50.493 | 406 | 186 | 5 | 10 | 415 | 17 | 407 | 7.53e-137 | 401 |
MS.gene31860.t1 | AT3G01990 | 50.493 | 406 | 186 | 5 | 10 | 415 | 17 | 407 | 7.53e-137 | 401 |
MS.gene31860.t1 | AT3G01990 | 50.493 | 406 | 186 | 5 | 10 | 415 | 3 | 393 | 1.18e-136 | 400 |
MS.gene31860.t1 | AT3G01990 | 50.493 | 406 | 186 | 5 | 10 | 415 | 3 | 393 | 1.18e-136 | 400 |
MS.gene31860.t1 | AT3G01990 | 50.493 | 406 | 186 | 5 | 10 | 415 | 17 | 407 | 1.59e-136 | 400 |
MS.gene31860.t1 | AT3G01990 | 50.493 | 406 | 186 | 5 | 10 | 415 | 3 | 393 | 1.62e-136 | 399 |
MS.gene31860.t1 | AT5G25320 | 48.010 | 402 | 183 | 5 | 38 | 414 | 1 | 401 | 1.95e-126 | 375 |
MS.gene31860.t1 | AT4G22780 | 47.160 | 405 | 189 | 4 | 12 | 415 | 9 | 389 | 1.22e-123 | 367 |
MS.gene31860.t1 | AT4G22780 | 47.160 | 405 | 189 | 4 | 12 | 415 | 9 | 389 | 1.22e-123 | 367 |
MS.gene31860.t1 | AT1G12420 | 45.476 | 420 | 206 | 8 | 8 | 427 | 6 | 402 | 1.16e-119 | 357 |
MS.gene31860.t1 | AT5G25320 | 46.791 | 374 | 171 | 7 | 1 | 347 | 1 | 373 | 4.28e-112 | 335 |
MS.gene31860.t1 | AT5G65890 | 40.213 | 470 | 254 | 7 | 7 | 454 | 8 | 472 | 9.88e-111 | 335 |
MS.gene31860.t1 | AT5G65890 | 40.213 | 470 | 254 | 7 | 7 | 454 | 8 | 472 | 9.88e-111 | 335 |
MS.gene31860.t1 | AT3G01990 | 48.980 | 343 | 160 | 5 | 10 | 352 | 17 | 344 | 5.00e-108 | 324 |
MS.gene31860.t1 | AT3G01990 | 48.980 | 343 | 160 | 5 | 10 | 352 | 3 | 330 | 6.18e-108 | 323 |
MS.gene31860.t1 | AT3G01990 | 49.408 | 338 | 156 | 5 | 10 | 347 | 17 | 339 | 1.09e-107 | 323 |
MS.gene31860.t1 | AT1G12420 | 43.182 | 352 | 178 | 7 | 76 | 427 | 1 | 330 | 6.79e-91 | 280 |
MS.gene31860.t1 | AT5G65890 | 37.882 | 425 | 237 | 7 | 52 | 454 | 1 | 420 | 3.38e-89 | 278 |
MS.gene31860.t1 | AT5G65890 | 37.882 | 425 | 237 | 7 | 52 | 454 | 1 | 420 | 3.38e-89 | 278 |
MS.gene31860.t1 | AT3G01990 | 47.003 | 317 | 153 | 5 | 10 | 326 | 17 | 318 | 1.56e-88 | 273 |
MS.gene31860.t1 | AT3G01990 | 47.003 | 317 | 153 | 5 | 10 | 326 | 3 | 304 | 1.69e-88 | 272 |
MS.gene31860.t1 | AT5G65890 | 36.207 | 348 | 203 | 5 | 124 | 454 | 13 | 358 | 6.24e-66 | 216 |
Find 131 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCAACTCTTCACACCTTC+TGG | 0.132030 | 1.4:+14565506 | None:intergenic |
TTGACTCTCCTCCCTCTTTC+AGG | 0.160628 | 1.4:-14565085 | MS.gene31860:CDS |
TTCTGATGGTAGTTGGTTTA+TGG | 0.190044 | 1.4:-14566313 | MS.gene31860:CDS |
AATACGCTCTATTTCAATAT+TGG | 0.195002 | 1.4:+14565061 | None:intergenic |
GCCCATCCTCGAGACGTTTC+TGG | 0.220608 | 1.4:+14562764 | None:intergenic |
CACGACTTCCAGCAGAATTC+CGG | 0.249259 | 1.4:+14566383 | None:intergenic |
CCCAACTCTTCACACCTTCT+GGG | 0.315377 | 1.4:+14565507 | None:intergenic |
GAAGCACTGCGTAAAGAAAT+TGG | 0.317035 | 1.4:-14562836 | MS.gene31860:CDS |
GCTAGAGTAAGCTTCTTCTT+TGG | 0.317293 | 1.4:-14562743 | MS.gene31860:CDS |
ATACGCTCTATTTCAATATT+GGG | 0.319901 | 1.4:+14565062 | None:intergenic |
CTAGAGTAAGCTTCTTCTTT+GGG | 0.326628 | 1.4:-14562742 | MS.gene31860:CDS |
CCAAATGTTGTTTGCTGATA+GGG | 0.330716 | 1.4:-14565147 | MS.gene31860:CDS |
TCTAATTCGCAGGGTCTCTA+TGG | 0.333159 | 1.4:-14566972 | MS.gene31860:intron |
ACCAAATGTTGTTTGCTGAT+AGG | 0.341425 | 1.4:-14565148 | MS.gene31860:CDS |
GGCTCGGACCAGTTTCTCCT+TGG | 0.354012 | 1.4:-14565204 | MS.gene31860:CDS |
CCCTATCAGCAAACAACATT+TGG | 0.356933 | 1.4:+14565147 | None:intergenic |
TTCAATATTGGGCCTGAAAG+AGG | 0.366015 | 1.4:+14565073 | None:intergenic |
ATTTAGTCCTTTCTCTCCTA+TGG | 0.378855 | 1.4:+14562910 | None:intergenic |
CTTCTTCTTTGGGAACTTGT+TGG | 0.378986 | 1.4:-14562732 | MS.gene31860:CDS |
ATAGAGCGTATTGAGGAAAA+AGG | 0.379809 | 1.4:-14565050 | MS.gene31860:CDS |
TCGAGACGTTTCTGGTGCTT+TGG | 0.390958 | 1.4:+14562772 | None:intergenic |
CTGTTGCATCATTGACATAA+AGG | 0.392060 | 1.4:+14565318 | None:intergenic |
CAGCTGCAATCACATTGAAT+TGG | 0.392381 | 1.4:+14565375 | None:intergenic |
ACGACTTCCAGCAGAATTCC+GGG | 0.392506 | 1.4:+14566384 | None:intergenic |
GGTGAAACCCAAGGAGAAAC+TGG | 0.393937 | 1.4:+14565196 | None:intergenic |
TCTGGGCTCTTGCGGCCCTT+TGG | 0.393975 | 1.4:+14565524 | None:intergenic |
CTGAAGTTTGGACTCATAAC+AGG | 0.401956 | 1.4:-14565355 | MS.gene31860:CDS |
CGTTTCTGGTGCTTTGGTGT+TGG | 0.410409 | 1.4:+14562778 | None:intergenic |
ACATATCTTCTGATGGTAGT+TGG | 0.412715 | 1.4:-14566320 | MS.gene31860:CDS |
ATGTGATTGCAGCTGAAGTT+TGG | 0.418119 | 1.4:-14565367 | MS.gene31860:CDS |
GCTCGGACCAGTTTCTCCTT+GGG | 0.418262 | 1.4:-14565203 | MS.gene31860:CDS |
ATCAGAAGATATGTAAGCTT+TGG | 0.421120 | 1.4:+14566329 | None:intergenic |
GCCCAGAAGGTGTGAAGAGT+TGG | 0.421778 | 1.4:-14565508 | MS.gene31860:CDS |
AGAACAGCTTAACAGTTTGT+AGG | 0.425881 | 1.4:-14562946 | MS.gene31860:CDS |
CATTGAATTGGAAGCTCGCC+AGG | 0.426882 | 1.4:+14565387 | None:intergenic |
ACAAAAGACCTGGGCGGTCC+CGG | 0.430029 | 1.4:+14565426 | None:intergenic |
CATACAGCCATTGAGCTCAT+TGG | 0.446032 | 1.4:-14565449 | MS.gene31860:CDS |
TCATACTCAGGATCAAAGTA+TGG | 0.448114 | 1.4:+14567445 | None:intergenic |
TCTGGTGCTTTGGTGTTGGC+TGG | 0.449272 | 1.4:+14562782 | None:intergenic |
CAATAAACCCGGAATTCTGC+TGG | 0.451982 | 1.4:-14566391 | MS.gene31860:CDS |
AATTATTGACTTCATTGAAA+AGG | 0.455728 | 1.4:-14566007 | MS.gene31860:intron |
AGCTTAACAGTTTGTAGGGC+AGG | 0.456982 | 1.4:-14562941 | MS.gene31860:CDS |
CCCAGAAGGTGTGAAGAGTT+GGG | 0.459787 | 1.4:-14565507 | MS.gene31860:CDS |
TCTTTGGGAACTTGTTGGAA+AGG | 0.462241 | 1.4:-14562727 | MS.gene31860:CDS |
CATGCCTCCATCTCATCTGA+AGG | 0.466025 | 1.4:-14564936 | MS.gene31860:CDS |
TGAAGAGTTGGGAAGGCAAA+CGG | 0.470682 | 1.4:-14565496 | MS.gene31860:CDS |
ACACTGAAGGGGAGAAAGAA+AGG | 0.477680 | 1.4:-14563996 | MS.gene31860:CDS |
TCAATGATGTTCATATCCAC+AGG | 0.481133 | 1.4:+14562857 | None:intergenic |
GTTGAATGGCAAAAGTTTGT+TGG | 0.483753 | 1.4:-14567468 | None:intergenic |
TTATGAAGTCAAGGTCTGTC+AGG | 0.488033 | 1.4:+14566355 | None:intergenic |
CGGGTTGGCATTCACTCCAT+TGG | 0.490248 | 1.4:-14565476 | MS.gene31860:CDS |
TTGCTGAAGTTCTCATACTC+AGG | 0.492722 | 1.4:+14567433 | None:intergenic |
GTCTGAGATATCAGCTGTCC+TGG | 0.493937 | 1.4:-14565405 | MS.gene31860:CDS |
GAACAGCTTAACAGTTTGTA+GGG | 0.496514 | 1.4:-14562945 | MS.gene31860:CDS |
TCACATTGACCATCACAGTC+TGG | 0.502894 | 1.4:+14562813 | None:intergenic |
GAAGAGTTGGGAAGGCAAAC+GGG | 0.503318 | 1.4:-14565495 | MS.gene31860:CDS |
ATTCTTAGGAGTACTTCATC+AGG | 0.510626 | 1.4:-14564041 | MS.gene31860:intron |
CTCATTGGCCGGGACCGCCC+AGG | 0.512065 | 1.4:-14565434 | MS.gene31860:CDS |
TGAACATTTAAATAGGCTCT+AGG | 0.512518 | 1.4:-14565548 | MS.gene31860:intron |
CCATGATTGTACACTGATCA+AGG | 0.512717 | 1.4:-14566936 | MS.gene31860:intron |
CACCAGAAACGTCTCGAGGA+TGG | 0.514881 | 1.4:-14562766 | MS.gene31860:CDS |
CAGCCATTGAGCTCATTGGC+CGG | 0.516255 | 1.4:-14565445 | MS.gene31860:CDS |
ACCAGAAACGTCTCGAGGAT+GGG | 0.518691 | 1.4:-14562765 | MS.gene31860:CDS |
ATGCATACCTGTGAAGCATA+AGG | 0.520785 | 1.4:+14564912 | None:intergenic |
TGAAGGGCCTTATGCTTCAC+AGG | 0.521336 | 1.4:-14564919 | MS.gene31860:intron |
CCTTGATCAGTGTACAATCA+TGG | 0.522276 | 1.4:+14566936 | None:intergenic |
AAGCTCAACCACATCCTTCG+TGG | 0.529052 | 1.4:-14565248 | MS.gene31860:CDS |
TCAATATTGGGCCTGAAAGA+GGG | 0.529751 | 1.4:+14565074 | None:intergenic |
TATCAGCAAACAACATTTGG+TGG | 0.529977 | 1.4:+14565150 | None:intergenic |
TTCTATGTGAGAGATGCATA+TGG | 0.536976 | 1.4:-14562884 | MS.gene31860:CDS |
TAGTGTGAGATGCAAAGATC+GGG | 0.541924 | 1.4:-14565015 | MS.gene31860:CDS |
TATCCTTTGCGCACAGCTCA+AGG | 0.542089 | 1.4:+14563008 | None:intergenic |
GATGGTAGTTGGTTTATGGA+TGG | 0.543454 | 1.4:-14566309 | MS.gene31860:intron |
GATATCTCAGACAAAAGACC+TGG | 0.545024 | 1.4:+14565416 | None:intergenic |
TACTTCATCAGGCACGTGGA+TGG | 0.545747 | 1.4:-14564030 | MS.gene31860:CDS |
GTGTCAACCATAGGAGAGAA+AGG | 0.546097 | 1.4:-14562917 | MS.gene31860:CDS |
CCTTCTGTCCATGTGGGTGA+AGG | 0.546823 | 1.4:+14565175 | None:intergenic |
AGCCATTGAGCTCATTGGCC+GGG | 0.553592 | 1.4:-14565444 | MS.gene31860:CDS |
AAGTTAACAGGGAACCTTGG+AGG | 0.558483 | 1.4:+14567400 | None:intergenic |
GTCCCGGCCAATGAGCTCAA+TGG | 0.558624 | 1.4:+14565442 | None:intergenic |
TAAATAGGCTCTAGGACCAA+AGG | 0.562311 | 1.4:-14565540 | MS.gene31860:intron |
AAGGGCCGCAAGAGCCCAGA+AGG | 0.562789 | 1.4:-14565521 | MS.gene31860:CDS |
GGATGCACACTTGACACTGA+AGG | 0.564728 | 1.4:-14564009 | MS.gene31860:CDS |
ATGCCTCCATCTCATCTGAA+GGG | 0.564762 | 1.4:-14564935 | MS.gene31860:CDS |
GCTTGCTGTCTGAAGTGACT+AGG | 0.566444 | 1.4:-14562979 | MS.gene31860:CDS |
GGGTTTCACCTTCACCCACA+TGG | 0.568310 | 1.4:-14565183 | MS.gene31860:CDS |
TCACACCTTCTGGGCTCTTG+CGG | 0.569295 | 1.4:+14565516 | None:intergenic |
AAATAGGCTCTAGGACCAAA+GGG | 0.571475 | 1.4:-14565539 | MS.gene31860:intron |
CCTCACAACCACGAAGGATG+TGG | 0.572226 | 1.4:+14565240 | None:intergenic |
CTTTGGTAATTATGAAGTCA+AGG | 0.574350 | 1.4:+14566346 | None:intergenic |
CCTTCACCCACATGGACAGA+AGG | 0.575437 | 1.4:-14565175 | MS.gene31860:CDS |
GATGCACACTTGACACTGAA+GGG | 0.583904 | 1.4:-14564008 | MS.gene31860:CDS |
CCACATCCTTCGTGGTTGTG+AGG | 0.585266 | 1.4:-14565240 | MS.gene31860:CDS |
AATGGCTGTATGATCACCAA+TGG | 0.585858 | 1.4:+14565460 | None:intergenic |
TTAGTGTGAGATGCAAAGAT+CGG | 0.586475 | 1.4:-14565016 | MS.gene31860:CDS |
AGGGCAGGTGTGTCAACCAT+AGG | 0.587010 | 1.4:-14562926 | MS.gene31860:CDS |
TATTGAAATAGAGCGTATTG+AGG | 0.589158 | 1.4:-14565057 | MS.gene31860:CDS |
GTGGAGCCTTCTGTCCATGT+GGG | 0.594043 | 1.4:+14565169 | None:intergenic |
AAAGCTTACATATCTTCTGA+TGG | 0.594595 | 1.4:-14566327 | MS.gene31860:CDS |
AGTTGGGAAGGCAAACGGGT+TGG | 0.597769 | 1.4:-14565491 | MS.gene31860:CDS |
CTGTGCGCAAAGGATAGAGT+GGG | 0.600715 | 1.4:-14563001 | MS.gene31860:CDS |
CAATGATGTTCATATCCACA+GGG | 0.601090 | 1.4:+14562858 | None:intergenic |
GAAGGTGTGAAGAGTTGGGA+AGG | 0.603934 | 1.4:-14565503 | MS.gene31860:CDS |
ATAAGGCCCTTCAGATGAGA+TGG | 0.605356 | 1.4:+14564929 | None:intergenic |
GATAGGGATTATGAGAGTGC+TGG | 0.606196 | 1.4:-14565131 | MS.gene31860:CDS |
CACTGAAGGGGAGAAAGAAA+GGG | 0.607213 | 1.4:-14563995 | MS.gene31860:CDS |
ATGAACAGTATTTCATGTCA+CGG | 0.611220 | 1.4:-14566061 | MS.gene31860:intron |
TGTGATGGTCAATGTGAAGA+AGG | 0.612803 | 1.4:-14562807 | MS.gene31860:CDS |
AGAAATTGGCCAGACTGTGA+TGG | 0.614374 | 1.4:-14562822 | MS.gene31860:CDS |
AGGGATTATGAGAGTGCTGG+TGG | 0.616212 | 1.4:-14565128 | MS.gene31860:CDS |
TGTCTGCACTCTTACTGACA+TGG | 0.618144 | 1.4:-14564973 | MS.gene31860:CDS |
GCTGTGCGCAAAGGATAGAG+TGG | 0.635425 | 1.4:-14563002 | MS.gene31860:CDS |
TATTCAAAGAAGAGTAAGCG+AGG | 0.636120 | 1.4:-14563950 | MS.gene31860:intron |
GCAACAGAATCAATCCTCCA+AGG | 0.646007 | 1.4:-14567414 | MS.gene31860:intron |
GGTGGAGCCTTCTGTCCATG+TGG | 0.646466 | 1.4:+14565168 | None:intergenic |
GTGGGTGAAGGTGAAACCCA+AGG | 0.649275 | 1.4:+14565187 | None:intergenic |
TTGTGAGGATGATGAGAATG+TGG | 0.655874 | 1.4:-14565225 | MS.gene31860:CDS |
AGGCCCTTCAGATGAGATGG+AGG | 0.656278 | 1.4:+14564932 | None:intergenic |
GGAGTACTTCATCAGGCACG+TGG | 0.663877 | 1.4:-14564034 | MS.gene31860:CDS |
GAGCCTTGAGCTGTGCGCAA+AGG | 0.664760 | 1.4:-14563011 | MS.gene31860:CDS |
ATGCACACTTGACACTGAAG+GGG | 0.665219 | 1.4:-14564007 | MS.gene31860:CDS |
ATTGATAGCGTCAATAAACC+CGG | 0.669304 | 1.4:-14566402 | MS.gene31860:CDS |
TTTCATGTCACGGATCAGCA+AGG | 0.670024 | 1.4:-14566051 | MS.gene31860:CDS |
ATATCTCAGACAAAAGACCT+GGG | 0.673607 | 1.4:+14565417 | None:intergenic |
CATCATCCTCACAACCACGA+AGG | 0.690210 | 1.4:+14565234 | None:intergenic |
AGGATGATGAGAATGTGGCT+CGG | 0.697192 | 1.4:-14565220 | MS.gene31860:CDS |
ATATTGGGCCTGAAAGAGGG+AGG | 0.704198 | 1.4:+14565077 | None:intergenic |
TGATGCAACAGATCAAGCTG+TGG | 0.710766 | 1.4:-14565306 | MS.gene31860:CDS |
AAAGCACCAGAAACGTCTCG+AGG | 0.732207 | 1.4:-14562770 | MS.gene31860:CDS |
AGATGCATATGGAAACCCTG+TGG | 0.774336 | 1.4:-14562873 | MS.gene31860:CDS |
TCTCAGACAAAAGACCTGGG+CGG | 0.775644 | 1.4:+14565420 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGAATAAAAAAATTGATA+AGG | + | chr1.4:14566780-14566799 | None:intergenic | 10.0% |
!! | AGTAAATATAAAATAAAGAA+TGG | + | chr1.4:14565316-14565335 | None:intergenic | 10.0% |
!!! | AGAATTAATTAATTATTTTG+AGG | + | chr1.4:14563275-14563294 | None:intergenic | 10.0% |
!!! | TTTACAGTAATATTTTAAAT+CGG | - | chr1.4:14565360-14565379 | MS.gene31860:CDS | 10.0% |
!!! | TTTTTTTTTTTTTCTGTTTT+TGG | + | chr1.4:14563397-14563416 | None:intergenic | 10.0% |
!! | AAATTAATTGACAAAATTTG+AGG | - | chr1.4:14566068-14566087 | MS.gene31860:intron | 15.0% |
!! | AACTATTACTAAAAAAGATA+AGG | - | chr1.4:14566288-14566307 | MS.gene31860:intron | 15.0% |
!! | TTGTTTGCTTAATTAAAATA+TGG | - | chr1.4:14563966-14563985 | MS.gene31860:CDS | 15.0% |
!!! | ATAATTTTATTAGTTTTCGA+CGG | - | chr1.4:14566828-14566847 | MS.gene31860:intron | 15.0% |
!!! | ATTAATTCTAACATTTTTCA+TGG | - | chr1.4:14563286-14563305 | MS.gene31860:intron | 15.0% |
!!! | TTAAACTCTAAAAAAATTGA+CGG | - | chr1.4:14562849-14562868 | MS.gene31860:CDS | 15.0% |
!!! | TTGTTTTCAAATTTTTGTAT+AGG | + | chr1.4:14565571-14565590 | None:intergenic | 15.0% |
!!! | TTTTTTATTCCTAGTAAATT+AGG | - | chr1.4:14563638-14563657 | MS.gene31860:intron | 15.0% |
!! | AAGTTAAATTCAATGATGTT+AGG | + | chr1.4:14563446-14563465 | None:intergenic | 20.0% |
!! | AGGTTCAAAATGTATTAATT+TGG | + | chr1.4:14566503-14566522 | None:intergenic | 20.0% |
!! | ATGAAATAAACTAATGATGA+TGG | + | chr1.4:14563689-14563708 | None:intergenic | 20.0% |
!! | GAAAGAACAAAAATAAGAAT+TGG | + | chr1.4:14564320-14564339 | None:intergenic | 20.0% |
!! | GTTAAATTAAAAGCAAACAA+AGG | + | chr1.4:14565701-14565720 | None:intergenic | 20.0% |
!! | TAGGGACTATAATTAATTAA+TGG | - | chr1.4:14566933-14566952 | MS.gene31860:intron | 20.0% |
!!! | AATTATTGACTTCATTGAAA+AGG | - | chr1.4:14564171-14564190 | MS.gene31860:intron | 20.0% |
!!! | ATTAGTTTATTTCATTTCCA+TGG | - | chr1.4:14563694-14563713 | MS.gene31860:intron | 20.0% |
!!! | CATCATTGAATTTAACTTAT+TGG | - | chr1.4:14563448-14563467 | MS.gene31860:intron | 20.0% |
!!! | GTTATTTTTTTGTCAAAACA+AGG | + | chr1.4:14563050-14563069 | None:intergenic | 20.0% |
!!! | TAATTTTATTAGTTTTCGAC+GGG | - | chr1.4:14566829-14566848 | MS.gene31860:intron | 20.0% |
!!! | TAGACAATCATGATTTTATA+AGG | + | chr1.4:14566749-14566768 | None:intergenic | 20.0% |
!!! | TTAAATATTTTGCAGATCAT+TGG | + | chr1.4:14562833-14562852 | None:intergenic | 20.0% |
! | AAAACCTAAAAACAAGATGA+AGG | - | chr1.4:14565593-14565612 | MS.gene31860:intron | 25.0% |
! | AACAGACTCTAAATATCAAT+TGG | - | chr1.4:14564546-14564565 | MS.gene31860:intron | 25.0% |
! | AATACGCTCTATTTCAATAT+TGG | + | chr1.4:14565120-14565139 | None:intergenic | 25.0% |
! | AATTTCTTTATTCCTTCCTT+TGG | + | chr1.4:14565489-14565508 | None:intergenic | 25.0% |
! | ATAATAATATGCATGATAGC+TGG | + | chr1.4:14567007-14567026 | None:intergenic | 25.0% |
! | ATACGCTCTATTTCAATATT+GGG | + | chr1.4:14565119-14565138 | None:intergenic | 25.0% |
! | CTAGTTGTGAACATTTAAAT+AGG | - | chr1.4:14564623-14564642 | MS.gene31860:intron | 25.0% |
! | GTTCTTGTAAAAAAGACTAA+GGG | - | chr1.4:14565518-14565537 | MS.gene31860:CDS | 25.0% |
! | TCAAGTAAGACAAATCTTTA+GGG | - | chr1.4:14565383-14565402 | MS.gene31860:CDS | 25.0% |
! | TGTTCTTGTAAAAAAGACTA+AGG | - | chr1.4:14565517-14565536 | MS.gene31860:CDS | 25.0% |
! | TTGTTGCATATGCAAATATT+GGG | - | chr1.4:14563996-14564015 | MS.gene31860:CDS | 25.0% |
! | TTTGTTGCATATGCAAATAT+TGG | - | chr1.4:14563995-14564014 | MS.gene31860:CDS | 25.0% |
!! | AAAACAAGCATTGTATTTCA+AGG | + | chr1.4:14562805-14562824 | None:intergenic | 25.0% |
!! | AAACAAGCATTGTATTTCAA+GGG | + | chr1.4:14562804-14562823 | None:intergenic | 25.0% |
!! | AGTAACAGTATGATGATTTT+TGG | - | chr1.4:14562888-14562907 | MS.gene31860:CDS | 25.0% |
!! | ATGTTTGAAGTATGTAGTAA+GGG | - | chr1.4:14566010-14566029 | MS.gene31860:CDS | 25.0% |
!! | ATTTTATAGCTACTCTAGTT+TGG | - | chr1.4:14565754-14565773 | MS.gene31860:intron | 25.0% |
!! | GACATGCTTTTAATAAGATA+TGG | - | chr1.4:14564225-14564244 | MS.gene31860:intron | 25.0% |
!! | TATGTTTGAAGTATGTAGTA+AGG | - | chr1.4:14566009-14566028 | MS.gene31860:CDS | 25.0% |
!! | TGAAGGTTTTGCAATTAAAA+CGG | - | chr1.4:14565610-14565629 | MS.gene31860:intron | 25.0% |
!! | TTGATATTTAGAGTCTGTTT+AGG | + | chr1.4:14564545-14564564 | None:intergenic | 25.0% |
!! | TTTCTGAAAAAGTTGATCAT+AGG | + | chr1.4:14563507-14563526 | None:intergenic | 25.0% |
!! | TTTTGCAATTAAAACGGAAA+AGG | - | chr1.4:14565616-14565635 | MS.gene31860:intron | 25.0% |
!!! | AAAACCTTCATCTTGTTTTT+AGG | + | chr1.4:14565600-14565619 | None:intergenic | 25.0% |
!!! | TAAGTTGATGTAATATCGAA+TGG | - | chr1.4:14563731-14563750 | MS.gene31860:intron | 25.0% |
AAAAGATAAGGATGAACTTC+TGG | - | chr1.4:14566300-14566319 | MS.gene31860:intron | 30.0% | |
AAAGCTTACATATCTTCTGA+TGG | - | chr1.4:14563851-14563870 | MS.gene31860:intron | 30.0% | |
AACTATGAACACTATCAGTA+AGG | + | chr1.4:14564473-14564492 | None:intergenic | 30.0% | |
AAGAACACATATGAAGCTAT+GGG | + | chr1.4:14566407-14566426 | None:intergenic | 30.0% | |
AAGTCTTTCATGCTCTATTA+TGG | - | chr1.4:14566341-14566360 | MS.gene31860:CDS | 30.0% | |
AATCATGCTACCATATACTT+AGG | + | chr1.4:14564295-14564314 | None:intergenic | 30.0% | |
AATGTTTGGCCTAATTTACT+AGG | + | chr1.4:14563650-14563669 | None:intergenic | 30.0% | |
ACTATGAACACTATCAGTAA+GGG | + | chr1.4:14564472-14564491 | None:intergenic | 30.0% | |
AGTAAATTAGGCCAAACATT+AGG | - | chr1.4:14563650-14563669 | MS.gene31860:intron | 30.0% | |
AGTTGTCTCATAAACTATCT+TGG | + | chr1.4:14565897-14565916 | None:intergenic | 30.0% | |
ATAACTAGTCCTTTGTTACA+AGG | - | chr1.4:14563065-14563084 | MS.gene31860:intron | 30.0% | |
ATATCTTACAGGACTATAGA+TGG | - | chr1.4:14566870-14566889 | MS.gene31860:intron | 30.0% | |
ATCAGAAGATATGTAAGCTT+TGG | + | chr1.4:14563852-14563871 | None:intergenic | 30.0% | |
ATGAACAGTATTTCATGTCA+CGG | - | chr1.4:14564117-14564136 | MS.gene31860:intron | 30.0% | |
ATTTAGCAATTCACTGAAAG+TGG | + | chr1.4:14563615-14563634 | None:intergenic | 30.0% | |
CAGAATTTATAAACACAGCT+AGG | - | chr1.4:14564423-14564442 | MS.gene31860:intron | 30.0% | |
CCTGTAAGATATAAAAACTG+TGG | + | chr1.4:14566862-14566881 | None:intergenic | 30.0% | |
GATTTGAATGATATTACGTG+TGG | + | chr1.4:14566676-14566695 | None:intergenic | 30.0% | |
GGAAAAGAAACCTAAGTATA+TGG | - | chr1.4:14564282-14564301 | MS.gene31860:intron | 30.0% | |
GGGATAAACAACTTAATCTT+CGG | + | chr1.4:14565974-14565993 | None:intergenic | 30.0% | |
GTCAAGTAAGACAAATCTTT+AGG | - | chr1.4:14565382-14565401 | MS.gene31860:CDS | 30.0% | |
GTTCAAGGATCAAAACATTA+GGG | + | chr1.4:14565674-14565693 | None:intergenic | 30.0% | |
TAGCAAACAAAAATATTGCG+AGG | - | chr1.4:14565444-14565463 | MS.gene31860:CDS | 30.0% | |
TATTGAAATAGAGCGTATTG+AGG | - | chr1.4:14565121-14565140 | MS.gene31860:CDS | 30.0% | |
TATTTCAAGGGAAGTTAACA+GGG | + | chr1.4:14562792-14562811 | None:intergenic | 30.0% | |
TCAAAACATTAGGGTTTGTA+TGG | + | chr1.4:14565665-14565684 | None:intergenic | 30.0% | |
TGAACATTTAAATAGGCTCT+AGG | - | chr1.4:14564630-14564649 | MS.gene31860:intron | 30.0% | |
TGTAATGCACTTACAATCTT+TGG | - | chr1.4:14564399-14564418 | MS.gene31860:intron | 30.0% | |
TGTTCAAGGATCAAAACATT+AGG | + | chr1.4:14565675-14565694 | None:intergenic | 30.0% | |
TTATCTACATGTGAAAACCA+TGG | + | chr1.4:14563714-14563733 | None:intergenic | 30.0% | |
TTGTTGATGTGGTAATTCTT+AGG | - | chr1.4:14566123-14566142 | MS.gene31860:intron | 30.0% | |
! | ATTAAGTTGTTTATCCCATC+AGG | - | chr1.4:14565977-14565996 | MS.gene31860:intron | 30.0% |
! | CCACAGTTTTTATATCTTAC+AGG | - | chr1.4:14566859-14566878 | MS.gene31860:intron | 30.0% |
! | CTTTGGTAATTATGAAGTCA+AGG | + | chr1.4:14563835-14563854 | None:intergenic | 30.0% |
! | TGAACTATCGTGATTTTGTA+GGG | - | chr1.4:14566915-14566934 | MS.gene31860:intron | 30.0% |
! | TTAAGTTGTTTATCCCATCA+GGG | - | chr1.4:14565978-14565997 | MS.gene31860:intron | 30.0% |
! | TTCACAACTAGTTGATACAA+GGG | + | chr1.4:14564614-14564633 | None:intergenic | 30.0% |
! | TTGAACTATCGTGATTTTGT+AGG | - | chr1.4:14566914-14566933 | MS.gene31860:intron | 30.0% |
! | TTTGAGGTAGAATGACAAAA+TGG | - | chr1.4:14566084-14566103 | MS.gene31860:intron | 30.0% |
!! | AGTAGGCTTTATCTTTGTTT+TGG | - | chr1.4:14564261-14564280 | MS.gene31860:intron | 30.0% |
!! | GCATTTAATTTTATGCTCTG+CGG | + | chr1.4:14563003-14563022 | None:intergenic | 30.0% |
!! | GGTAAAAGTTTTATAGACCA+AGG | - | chr1.4:14566891-14566910 | MS.gene31860:intron | 30.0% |
AAATCACGATAGTTCAACCT+TGG | + | chr1.4:14566911-14566930 | None:intergenic | 35.0% | |
AACATAGTATTAGTCCCTGA+TGG | + | chr1.4:14565995-14566014 | None:intergenic | 35.0% | |
AAGGGAATTTCTACTGTGTT+TGG | + | chr1.4:14564454-14564473 | None:intergenic | 35.0% | |
AAGTGCATTACACACTCAAA+AGG | + | chr1.4:14564391-14564410 | None:intergenic | 35.0% | |
AATGGTACGGTATACATACA+TGG | - | chr1.4:14566548-14566567 | MS.gene31860:intron | 35.0% | |
ACATAGTATTAGTCCCTGAT+GGG | + | chr1.4:14565994-14566013 | None:intergenic | 35.0% | |
ACATATCTTCTGATGGTAGT+TGG | - | chr1.4:14563858-14563877 | MS.gene31860:intron | 35.0% | |
AGAACACATATGAAGCTATG+GGG | + | chr1.4:14566406-14566425 | None:intergenic | 35.0% | |
AGAACAGCTTAACAGTTTGT+AGG | - | chr1.4:14567232-14567251 | MS.gene31860:intron | 35.0% | |
AGCATGTCAGATAAAAATCG+AGG | + | chr1.4:14564213-14564232 | None:intergenic | 35.0% | |
AGTCTGTTTAGGAAATAGCA+GGG | + | chr1.4:14564534-14564553 | None:intergenic | 35.0% | |
AGTGCATTACACACTCAAAA+GGG | + | chr1.4:14564390-14564409 | None:intergenic | 35.0% | |
ATAGAGCGTATTGAGGAAAA+AGG | - | chr1.4:14565128-14565147 | MS.gene31860:CDS | 35.0% | |
ATATCTCAGACAAAAGACCT+GGG | + | chr1.4:14564764-14564783 | None:intergenic | 35.0% | |
ATTTAGTCCTTTCTCTCCTA+TGG | + | chr1.4:14567271-14567290 | None:intergenic | 35.0% | |
CAATGATGTTCATATCCACA+GGG | + | chr1.4:14567323-14567342 | None:intergenic | 35.0% | |
CCATATACCTCAATTTCACA+AGG | + | chr1.4:14563135-14563154 | None:intergenic | 35.0% | |
CCTTGTGAAATTGAGGTATA+TGG | - | chr1.4:14563132-14563151 | MS.gene31860:intron | 35.0% | |
CTAGAGTAAGCTTCTTCTTT+GGG | - | chr1.4:14567436-14567455 | MS.gene31860:CDS | 35.0% | |
CTATTATGGAACTTGGTTTC+TGG | - | chr1.4:14566355-14566374 | MS.gene31860:CDS | 35.0% | |
CTGTTGCATCATTGACATAA+AGG | + | chr1.4:14564863-14564882 | None:intergenic | 35.0% | |
GAACAGCTTAACAGTTTGTA+GGG | - | chr1.4:14567233-14567252 | MS.gene31860:intron | 35.0% | |
GAAGAACACATATGAAGCTA+TGG | + | chr1.4:14566408-14566427 | None:intergenic | 35.0% | |
GCTTATTTGAGCTTATCTAC+TGG | - | chr1.4:14565781-14565800 | MS.gene31860:intron | 35.0% | |
GTATTTCAAGGGAAGTTAAC+AGG | + | chr1.4:14562793-14562812 | None:intergenic | 35.0% | |
GTGAAATTGAGGTATATGGT+GGG | - | chr1.4:14563136-14563155 | MS.gene31860:intron | 35.0% | |
TAGCACTTGTGAAACTGTTT+GGG | - | chr1.4:14565807-14565826 | MS.gene31860:intron | 35.0% | |
TATCAGCAAACAACATTTGG+TGG | + | chr1.4:14565031-14565050 | None:intergenic | 35.0% | |
TATTCAAAGAAGAGTAAGCG+AGG | - | chr1.4:14566228-14566247 | MS.gene31860:intron | 35.0% | |
TCAATGATGTTCATATCCAC+AGG | + | chr1.4:14567324-14567343 | None:intergenic | 35.0% | |
TCATACTCAGGATCAAAGTA+TGG | + | chr1.4:14562736-14562755 | None:intergenic | 35.0% | |
TCATGCTCTATTATGGAACT+TGG | - | chr1.4:14566348-14566367 | MS.gene31860:CDS | 35.0% | |
TCGAGCATAAATATGACTGA+TGG | + | chr1.4:14566984-14567003 | None:intergenic | 35.0% | |
TCTCATAAACTATCTTGGAG+AGG | + | chr1.4:14565892-14565911 | None:intergenic | 35.0% | |
TGTAGACTAAGTTGTTGATG+TGG | - | chr1.4:14566112-14566131 | MS.gene31860:intron | 35.0% | |
TGTGAAATTGAGGTATATGG+TGG | - | chr1.4:14563135-14563154 | MS.gene31860:intron | 35.0% | |
TTACACTCCTTGTGAAATTG+AGG | - | chr1.4:14563125-14563144 | MS.gene31860:intron | 35.0% | |
TTAGCACTTGTGAAACTGTT+TGG | - | chr1.4:14565806-14565825 | MS.gene31860:intron | 35.0% | |
TTAGTGTGAGATGCAAAGAT+CGG | - | chr1.4:14565162-14565181 | MS.gene31860:CDS | 35.0% | |
TTCTATGTGAGAGATGCATA+TGG | - | chr1.4:14567294-14567313 | MS.gene31860:intron | 35.0% | |
! | ACCAAATGTTGTTTGCTGAT+AGG | - | chr1.4:14565030-14565049 | MS.gene31860:CDS | 35.0% |
! | ATAGCTACTCTAGTTTGGAT+TGG | - | chr1.4:14565759-14565778 | MS.gene31860:intron | 35.0% |
! | ATGGTAGCAATGCTTTTAGT+AGG | - | chr1.4:14564244-14564263 | MS.gene31860:intron | 35.0% |
! | CCAAATGTTGTTTGCTGATA+GGG | - | chr1.4:14565031-14565050 | MS.gene31860:CDS | 35.0% |
! | GTTCACAACTAGTTGATACA+AGG | + | chr1.4:14564615-14564634 | None:intergenic | 35.0% |
! | TTCTGATGGTAGTTGGTTTA+TGG | - | chr1.4:14563865-14563884 | MS.gene31860:intron | 35.0% |
! | TTTGAAGTATGTAGTAAGGG+AGG | - | chr1.4:14566013-14566032 | MS.gene31860:CDS | 35.0% |
!! | AAACTCTGTTTCTAATTCGC+AGG | - | chr1.4:14563196-14563215 | MS.gene31860:intron | 35.0% |
!! | AACTCTGTTTCTAATTCGCA+GGG | - | chr1.4:14563197-14563216 | MS.gene31860:intron | 35.0% |
!! | ATTCTTAGGAGTACTTCATC+AGG | - | chr1.4:14566137-14566156 | MS.gene31860:intron | 35.0% |
!! | ATTGATAGCGTCAATAAACC+CGG | - | chr1.4:14563776-14563795 | MS.gene31860:intron | 35.0% |
!! | TTCTGGCTTAATGTTTCTCT+TGG | - | chr1.4:14566372-14566391 | MS.gene31860:CDS | 35.0% |
!! | TTGTTTTGTTGCGAATGGTA+CGG | - | chr1.4:14566535-14566554 | MS.gene31860:intron | 35.0% |
!!! | GAGGAATTTTTTAGTTCAGC+TGG | - | chr1.4:14565463-14565482 | MS.gene31860:CDS | 35.0% |
!!! | TCACTGAAAGTGGTTTTAAC+AGG | + | chr1.4:14563605-14563624 | None:intergenic | 35.0% |
AATGGCTGTATGATCACCAA+TGG | + | chr1.4:14564721-14564740 | None:intergenic | 40.0% | |
AGCACGAATGTGTATGTTGT+AGG | + | chr1.4:14564040-14564059 | None:intergenic | 40.0% | |
ATGCATACCTGTGAAGCATA+AGG | + | chr1.4:14565269-14565288 | None:intergenic | 40.0% | |
ATGGTCAGATACAATCTGAG+TGG | + | chr1.4:14566583-14566602 | None:intergenic | 40.0% | |
ATGTGATTGCAGCTGAAGTT+TGG | - | chr1.4:14564811-14564830 | MS.gene31860:intron | 40.0% | |
CAGAAGAAGTTGCTCGTTTA+TGG | - | chr1.4:14563172-14563191 | MS.gene31860:intron | 40.0% | |
CAGCTGCAATCACATTGAAT+TGG | + | chr1.4:14564806-14564825 | None:intergenic | 40.0% | |
CATAAACGAGCAACTTCTTC+TGG | + | chr1.4:14563174-14563193 | None:intergenic | 40.0% | |
CATCGTATCCACCAATGAAT+CGG | - | chr1.4:14566600-14566619 | MS.gene31860:intron | 40.0% | |
CCATGATTGTACACTGATCA+AGG | - | chr1.4:14563242-14563261 | MS.gene31860:intron | 40.0% | |
CCCTATCAGCAAACAACATT+TGG | + | chr1.4:14565034-14565053 | None:intergenic | 40.0% | |
CCTTGATCAGTGTACAATCA+TGG | + | chr1.4:14563245-14563264 | None:intergenic | 40.0% | |
CTGAAGTTTGGACTCATAAC+AGG | - | chr1.4:14564823-14564842 | MS.gene31860:intron | 40.0% | |
GAATGTGTATGTTGTAGGCA+AGG | + | chr1.4:14564035-14564054 | None:intergenic | 40.0% | |
GAGTCTGTTTAGGAAATAGC+AGG | + | chr1.4:14564535-14564554 | None:intergenic | 40.0% | |
GATATCTCAGACAAAAGACC+TGG | + | chr1.4:14564765-14564784 | None:intergenic | 40.0% | |
GATATTACGTGTGGAGCATA+AGG | + | chr1.4:14566667-14566686 | None:intergenic | 40.0% | |
GCAAACAAAGGATGTGTTCA+AGG | + | chr1.4:14565689-14565708 | None:intergenic | 40.0% | |
GCGAATCAAGACTCAAAATG+CGG | + | chr1.4:14563312-14563331 | None:intergenic | 40.0% | |
GCTAGAGTAAGCTTCTTCTT+TGG | - | chr1.4:14567435-14567454 | MS.gene31860:CDS | 40.0% | |
GTGCATTACACACTCAAAAG+GGG | + | chr1.4:14564389-14564408 | None:intergenic | 40.0% | |
TAGTGTGAGATGCAAAGATC+GGG | - | chr1.4:14565163-14565182 | MS.gene31860:CDS | 40.0% | |
TCAATATTGGGCCTGAAAGA+GGG | + | chr1.4:14565107-14565126 | None:intergenic | 40.0% | |
TGACATCGACCTTGTAACAA+AGG | + | chr1.4:14563077-14563096 | None:intergenic | 40.0% | |
TGTAACCTATGACACCACTA+GGG | + | chr1.4:14563110-14563129 | None:intergenic | 40.0% | |
TGTGATGGTCAATGTGAAGA+AGG | - | chr1.4:14567371-14567390 | MS.gene31860:intron | 40.0% | |
TTATGAAGTCAAGGTCTGTC+AGG | + | chr1.4:14563826-14563845 | None:intergenic | 40.0% | |
TTCAATATTGGGCCTGAAAG+AGG | + | chr1.4:14565108-14565127 | None:intergenic | 40.0% | |
TTGCTGAAGTTCTCATACTC+AGG | + | chr1.4:14562748-14562767 | None:intergenic | 40.0% | |
TTGTGAGGATGATGAGAATG+TGG | - | chr1.4:14564953-14564972 | MS.gene31860:CDS | 40.0% | |
TTTGGTCAACAAAAAGCCAC+AGG | + | chr1.4:14563379-14563398 | None:intergenic | 40.0% | |
! | AGTCTTGATTCGCTATCTGA+AGG | - | chr1.4:14563319-14563338 | MS.gene31860:intron | 40.0% |
! | CTTCTTCTTTGGGAACTTGT+TGG | - | chr1.4:14567446-14567465 | MS.gene31860:CDS | 40.0% |
! | GATGGTAGTTGGTTTATGGA+TGG | - | chr1.4:14563869-14563888 | MS.gene31860:intron | 40.0% |
!! | AAATAGGCTCTAGGACCAAA+GGG | - | chr1.4:14564639-14564658 | MS.gene31860:intron | 40.0% |
!! | AACTAATGATGATGGCCACT+TGG | + | chr1.4:14563681-14563700 | None:intergenic | 40.0% |
!! | ACTAATGATGATGGCCACTT+GGG | + | chr1.4:14563680-14563699 | None:intergenic | 40.0% |
!! | GAAGCACTGCGTAAAGAAAT+TGG | - | chr1.4:14567342-14567361 | MS.gene31860:intron | 40.0% |
!! | TAAATAGGCTCTAGGACCAA+AGG | - | chr1.4:14564638-14564657 | MS.gene31860:intron | 40.0% |
!! | TCTTTGGGAACTTGTTGGAA+AGG | - | chr1.4:14567451-14567470 | MS.gene31860:CDS | 40.0% |
!!! | TCTGCTTGTTTTGTTGCGAA+TGG | - | chr1.4:14566530-14566549 | MS.gene31860:intron | 40.0% |
!!! | TTTTTAGTTCAGCTGGCCAA+AGG | - | chr1.4:14565470-14565489 | MS.gene31860:CDS | 40.0% |
AAACATTAGGCTACCCCAAG+TGG | - | chr1.4:14563663-14563682 | MS.gene31860:intron | 45.0% | |
AAGTTAACAGGGAACCTTGG+AGG | + | chr1.4:14562781-14562800 | None:intergenic | 45.0% | |
ACACTGAAGGGGAGAAAGAA+AGG | - | chr1.4:14566182-14566201 | MS.gene31860:intron | 45.0% | |
ACTTGGGGTAGCCTAATGTT+TGG | + | chr1.4:14563664-14563683 | None:intergenic | 45.0% | |
AGAAATTGGCCAGACTGTGA+TGG | - | chr1.4:14567356-14567375 | MS.gene31860:intron | 45.0% | |
AGATGCATATGGAAACCCTG+TGG | - | chr1.4:14567305-14567324 | MS.gene31860:intron | 45.0% | |
AGCTTAACAGTTTGTAGGGC+AGG | - | chr1.4:14567237-14567256 | MS.gene31860:intron | 45.0% | |
AGGATGATGAGAATGTGGCT+CGG | - | chr1.4:14564958-14564977 | MS.gene31860:CDS | 45.0% | |
ATAAGGCCCTTCAGATGAGA+TGG | + | chr1.4:14565252-14565271 | None:intergenic | 45.0% | |
ATAGCAGGGTAGATACTAGC+AGG | + | chr1.4:14564520-14564539 | None:intergenic | 45.0% | |
ATCCACCAATGAATCGGTGA+CGG | - | chr1.4:14566606-14566625 | MS.gene31860:intron | 45.0% | |
ATGCACACTTGACACTGAAG+GGG | - | chr1.4:14566171-14566190 | MS.gene31860:intron | 45.0% | |
ATGCCTCCATCTCATCTGAA+GGG | - | chr1.4:14565243-14565262 | MS.gene31860:CDS | 45.0% | |
CAAAACAAGCAGATAGCTGC+AGG | + | chr1.4:14566523-14566542 | None:intergenic | 45.0% | |
CAAGTGACGTAAAACTCCAG+TGG | + | chr1.4:14563353-14563372 | None:intergenic | 45.0% | |
CAATAAACCCGGAATTCTGC+TGG | - | chr1.4:14563787-14563806 | MS.gene31860:intron | 45.0% | |
CACTGAAGGGGAGAAAGAAA+GGG | - | chr1.4:14566183-14566202 | MS.gene31860:intron | 45.0% | |
CATACAGCCATTGAGCTCAT+TGG | - | chr1.4:14564729-14564748 | MS.gene31860:intron | 45.0% | |
GATGCACACTTGACACTGAA+GGG | - | chr1.4:14566170-14566189 | MS.gene31860:intron | 45.0% | |
GCAACAGAATCAATCCTCCA+AGG | - | chr1.4:14562764-14562783 | MS.gene31860:CDS | 45.0% | |
GTCATCAGTTCAATCCCTAG+TGG | - | chr1.4:14563093-14563112 | MS.gene31860:intron | 45.0% | |
GTCGTTACCATTGATCCTCT+GGG | - | chr1.4:14567127-14567146 | MS.gene31860:intron | 45.0% | |
GTGTAACCTATGACACCACT+AGG | + | chr1.4:14563111-14563130 | None:intergenic | 45.0% | |
GTGTCAACCATAGGAGAGAA+AGG | - | chr1.4:14567261-14567280 | MS.gene31860:intron | 45.0% | |
TACACACTCAAAAGGGGAGA+CGG | + | chr1.4:14564383-14564402 | None:intergenic | 45.0% | |
TCACATTGACCATCACAGTC+TGG | + | chr1.4:14567368-14567387 | None:intergenic | 45.0% | |
TCTAATTCGCAGGGTCTCTA+TGG | - | chr1.4:14563206-14563225 | MS.gene31860:intron | 45.0% | |
TGAAGAGTTGGGAAGGCAAA+CGG | - | chr1.4:14564682-14564701 | MS.gene31860:intron | 45.0% | |
TGAGGAAAAAGGCTACTCAG+TGG | - | chr1.4:14565139-14565158 | MS.gene31860:CDS | 45.0% | |
TGATGCAACAGATCAAGCTG+TGG | - | chr1.4:14564872-14564891 | MS.gene31860:intron | 45.0% | |
TGTCGTTACCATTGATCCTC+TGG | - | chr1.4:14567126-14567145 | MS.gene31860:intron | 45.0% | |
TGTCTGCACTCTTACTGACA+TGG | - | chr1.4:14565205-14565224 | MS.gene31860:CDS | 45.0% | |
TGTTGTAGGCAAGGTTTGCA+TGG | + | chr1.4:14564026-14564045 | None:intergenic | 45.0% | |
TTTACGTCACTTGTGTCCTG+TGG | - | chr1.4:14563360-14563379 | MS.gene31860:intron | 45.0% | |
TTTCATGTCACGGATCAGCA+AGG | - | chr1.4:14564127-14564146 | MS.gene31860:intron | 45.0% | |
! | AATGAATCGGTGACGGTTGA+TGG | - | chr1.4:14566613-14566632 | MS.gene31860:intron | 45.0% |
! | CGATTCATTGGTGGATACGA+TGG | + | chr1.4:14566602-14566621 | None:intergenic | 45.0% |
! | GATAGGGATTATGAGAGTGC+TGG | - | chr1.4:14565047-14565066 | MS.gene31860:CDS | 45.0% |
!! | ATCAACCGTCACCGATTCAT+TGG | + | chr1.4:14566614-14566633 | None:intergenic | 45.0% |
!! | CTAATGATGATGGCCACTTG+GGG | + | chr1.4:14563679-14563698 | None:intergenic | 45.0% |
!! | TCAATCCCTAGTGGTGTCAT+AGG | - | chr1.4:14563102-14563121 | MS.gene31860:intron | 45.0% |
AAGCTCAACCACATCCTTCG+TGG | - | chr1.4:14564930-14564949 | MS.gene31860:CDS | 50.0% | |
ACACACTCAAAAGGGGAGAC+GGG | + | chr1.4:14564382-14564401 | None:intergenic | 50.0% | |
ACCAGAAACGTCTCGAGGAT+GGG | - | chr1.4:14567413-14567432 | MS.gene31860:intron | 50.0% | |
ACCATTGATCCTCTGGGTGA+TGG | - | chr1.4:14567133-14567152 | MS.gene31860:intron | 50.0% | |
ACGACTTCCAGCAGAATTCC+GGG | + | chr1.4:14563797-14563816 | None:intergenic | 50.0% | |
AGACGGGTGTAGTGCTTAAC+TGG | + | chr1.4:14564366-14564385 | None:intergenic | 50.0% | |
ATATTGGGCCTGAAAGAGGG+AGG | + | chr1.4:14565104-14565123 | None:intergenic | 50.0% | |
CACGACTTCCAGCAGAATTC+CGG | + | chr1.4:14563798-14563817 | None:intergenic | 50.0% | |
CATCATCCTCACAACCACGA+AGG | + | chr1.4:14564947-14564966 | None:intergenic | 50.0% | |
CATGCCTCCATCTCATCTGA+AGG | - | chr1.4:14565242-14565261 | MS.gene31860:CDS | 50.0% | |
CATTGAATTGGAAGCTCGCC+AGG | + | chr1.4:14564794-14564813 | None:intergenic | 50.0% | |
CCCAACTCTTCACACCTTCT+GGG | + | chr1.4:14564674-14564693 | None:intergenic | 50.0% | |
CTGTGCGCAAAGGATAGAGT+GGG | - | chr1.4:14567177-14567196 | MS.gene31860:intron | 50.0% | |
GAAGAGTTGGGAAGGCAAAC+GGG | - | chr1.4:14564683-14564702 | MS.gene31860:intron | 50.0% | |
GACGTAAAACTCCAGTGGCT+AGG | + | chr1.4:14563348-14563367 | None:intergenic | 50.0% | |
GGATGCACACTTGACACTGA+AGG | - | chr1.4:14566169-14566188 | MS.gene31860:intron | 50.0% | |
GGGAAGTTAACAGGGAACCT+TGG | + | chr1.4:14562784-14562803 | None:intergenic | 50.0% | |
GGTGAAACCCAAGGAGAAAC+TGG | + | chr1.4:14564985-14565004 | None:intergenic | 50.0% | |
TACTTCATCAGGCACGTGGA+TGG | - | chr1.4:14566148-14566167 | MS.gene31860:intron | 50.0% | |
TAGTTCAGCTGGCCAAAGGA+AGG | - | chr1.4:14565474-14565493 | MS.gene31860:CDS | 50.0% | |
TATCCTTTGCGCACAGCTCA+AGG | + | chr1.4:14567173-14567192 | None:intergenic | 50.0% | |
TCCATCACCCAGAGGATCAA+TGG | + | chr1.4:14567137-14567156 | None:intergenic | 50.0% | |
TCCCAACTCTTCACACCTTC+TGG | + | chr1.4:14564675-14564694 | None:intergenic | 50.0% | |
TCTCAGACAAAAGACCTGGG+CGG | + | chr1.4:14564761-14564780 | None:intergenic | 50.0% | |
TCTGAAGGAAACCTAGCCAC+TGG | - | chr1.4:14563334-14563353 | MS.gene31860:intron | 50.0% | |
TTGACTCTCCTCCCTCTTTC+AGG | - | chr1.4:14565093-14565112 | MS.gene31860:CDS | 50.0% | |
! | AAAGCACCAGAAACGTCTCG+AGG | - | chr1.4:14567408-14567427 | MS.gene31860:intron | 50.0% |
! | CCCAGAAGGTGTGAAGAGTT+GGG | - | chr1.4:14564671-14564690 | MS.gene31860:intron | 50.0% |
! | GAAGGTGTGAAGAGTTGGGA+AGG | - | chr1.4:14564675-14564694 | MS.gene31860:intron | 50.0% |
! | GTCTGAGATATCAGCTGTCC+TGG | - | chr1.4:14564773-14564792 | MS.gene31860:intron | 50.0% |
! | TGAAGGGCCTTATGCTTCAC+AGG | - | chr1.4:14565259-14565278 | MS.gene31860:CDS | 50.0% |
!! | AACCGTCACCGATTCATTGG+TGG | + | chr1.4:14566611-14566630 | None:intergenic | 50.0% |
!! | AGGGATTATGAGAGTGCTGG+TGG | - | chr1.4:14565050-14565069 | MS.gene31860:CDS | 50.0% |
!! | CGTTTCTGGTGCTTTGGTGT+TGG | + | chr1.4:14567403-14567422 | None:intergenic | 50.0% |
!! | GCTTGCTGTCTGAAGTGACT+AGG | - | chr1.4:14567199-14567218 | MS.gene31860:intron | 50.0% |
!! | TCGAGACGTTTCTGGTGCTT+TGG | + | chr1.4:14567409-14567428 | None:intergenic | 50.0% |
AGCCATTGAGCTCATTGGCC+GGG | - | chr1.4:14564734-14564753 | MS.gene31860:intron | 55.0% | |
AGGCCCTTCAGATGAGATGG+AGG | + | chr1.4:14565249-14565268 | None:intergenic | 55.0% | |
AGGGCAGGTGTGTCAACCAT+AGG | - | chr1.4:14567252-14567271 | MS.gene31860:intron | 55.0% | |
AGTTGGGAAGGCAAACGGGT+TGG | - | chr1.4:14564687-14564706 | MS.gene31860:intron | 55.0% | |
CACCAGAAACGTCTCGAGGA+TGG | - | chr1.4:14567412-14567431 | MS.gene31860:intron | 55.0% | |
CAGCCATTGAGCTCATTGGC+CGG | - | chr1.4:14564733-14564752 | MS.gene31860:intron | 55.0% | |
CCACATCCTTCGTGGTTGTG+AGG | - | chr1.4:14564938-14564957 | MS.gene31860:CDS | 55.0% | |
CCTCACAACCACGAAGGATG+TGG | + | chr1.4:14564941-14564960 | None:intergenic | 55.0% | |
CCTTCACCCACATGGACAGA+AGG | - | chr1.4:14565003-14565022 | MS.gene31860:CDS | 55.0% | |
CCTTCTGTCCATGTGGGTGA+AGG | + | chr1.4:14565006-14565025 | None:intergenic | 55.0% | |
GCTCGGACCAGTTTCTCCTT+GGG | - | chr1.4:14564975-14564994 | MS.gene31860:CDS | 55.0% | |
GCTGTGCGCAAAGGATAGAG+TGG | - | chr1.4:14567176-14567195 | MS.gene31860:intron | 55.0% | |
GGGTTTCACCTTCACCCACA+TGG | - | chr1.4:14564995-14565014 | MS.gene31860:CDS | 55.0% | |
GTGGAGCCTTCTGTCCATGT+GGG | + | chr1.4:14565012-14565031 | None:intergenic | 55.0% | |
GTGGGTGAAGGTGAAACCCA+AGG | + | chr1.4:14564994-14565013 | None:intergenic | 55.0% | |
TCACACCTTCTGGGCTCTTG+CGG | + | chr1.4:14564665-14564684 | None:intergenic | 55.0% | |
! | GCCCAGAAGGTGTGAAGAGT+TGG | - | chr1.4:14564670-14564689 | MS.gene31860:intron | 55.0% |
! | GGAGTACTTCATCAGGCACG+TGG | - | chr1.4:14566144-14566163 | MS.gene31860:intron | 55.0% |
!! | ATCCTCTGGGTGATGGACAC+AGG | - | chr1.4:14567140-14567159 | MS.gene31860:intron | 55.0% |
!! | CGGGTTGGCATTCACTCCAT+TGG | - | chr1.4:14564702-14564721 | MS.gene31860:intron | 55.0% |
!! | TCCTCTGGGTGATGGACACA+GGG | - | chr1.4:14567141-14567160 | MS.gene31860:intron | 55.0% |
!! | TCTGGTGCTTTGGTGTTGGC+TGG | + | chr1.4:14567399-14567418 | None:intergenic | 55.0% |
ACAAAAGACCTGGGCGGTCC+CGG | + | chr1.4:14564755-14564774 | None:intergenic | 60.0% | |
ACCCTGTGTCCATCACCCAG+AGG | + | chr1.4:14567145-14567164 | None:intergenic | 60.0% | |
GAGCCTTGAGCTGTGCGCAA+AGG | - | chr1.4:14567167-14567186 | MS.gene31860:intron | 60.0% | |
GCCCATCCTCGAGACGTTTC+TGG | + | chr1.4:14567417-14567436 | None:intergenic | 60.0% | |
GGCTCGGACCAGTTTCTCCT+TGG | - | chr1.4:14564974-14564993 | MS.gene31860:CDS | 60.0% | |
GGTGGAGCCTTCTGTCCATG+TGG | + | chr1.4:14565013-14565032 | None:intergenic | 60.0% | |
GTCCCGGCCAATGAGCTCAA+TGG | + | chr1.4:14564739-14564758 | None:intergenic | 60.0% | |
AAGGGCCGCAAGAGCCCAGA+AGG | - | chr1.4:14564657-14564676 | MS.gene31860:intron | 65.0% | |
TCTGGGCTCTTGCGGCCCTT+TGG | + | chr1.4:14564657-14564676 | None:intergenic | 65.0% | |
CTCATTGGCCGGGACCGCCC+AGG | - | chr1.4:14564744-14564763 | MS.gene31860:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 14562715 | 14567485 | 14562715 | ID=MS.gene31860 |
chr1.4 | mRNA | 14562715 | 14567485 | 14562715 | ID=MS.gene31860.t1;Parent=MS.gene31860 |
chr1.4 | exon | 14567415 | 14567485 | 14567415 | ID=MS.gene31860.t1.exon1;Parent=MS.gene31860.t1 |
chr1.4 | CDS | 14567415 | 14567485 | 14567415 | ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1 |
chr1.4 | exon | 14566937 | 14566982 | 14566937 | ID=MS.gene31860.t1.exon2;Parent=MS.gene31860.t1 |
chr1.4 | CDS | 14566937 | 14566982 | 14566937 | ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1 |
chr1.4 | exon | 14566310 | 14566424 | 14566310 | ID=MS.gene31860.t1.exon3;Parent=MS.gene31860.t1 |
chr1.4 | CDS | 14566310 | 14566424 | 14566310 | ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1 |
chr1.4 | exon | 14566008 | 14566075 | 14566008 | ID=MS.gene31860.t1.exon4;Parent=MS.gene31860.t1 |
chr1.4 | CDS | 14566008 | 14566075 | 14566008 | ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1 |
chr1.4 | exon | 14564920 | 14565555 | 14564920 | ID=MS.gene31860.t1.exon5;Parent=MS.gene31860.t1 |
chr1.4 | CDS | 14564920 | 14565555 | 14564920 | ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1 |
chr1.4 | exon | 14563951 | 14564055 | 14563951 | ID=MS.gene31860.t1.exon6;Parent=MS.gene31860.t1 |
chr1.4 | CDS | 14563951 | 14564055 | 14563951 | ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1 |
chr1.4 | exon | 14562715 | 14563038 | 14562715 | ID=MS.gene31860.t1.exon7;Parent=MS.gene31860.t1 |
chr1.4 | CDS | 14562715 | 14563038 | 14562715 | ID=cds.MS.gene31860.t1;Parent=MS.gene31860.t1 |
Gene Sequence |
Protein sequence |