Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20314.t1 | XP_003611547.1 | 98.4 | 487 | 7 | 1 | 1 | 487 | 1 | 486 | 2.30E-264 | 921 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20314.t1 | Q9FHP1 | 47.4 | 498 | 221 | 9 | 1 | 482 | 2 | 474 | 8.6e-119 | 428.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20314.t1 | G7K2F4 | 98.4 | 487 | 7 | 1 | 1 | 487 | 1 | 486 | 1.7e-264 | 921.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013709 | MS.gene20314 | PPI |
| MS.gene20314 | MS.gene02506 | PPI |
| MS.gene20314 | MS.gene052926 | PPI |
| MS.gene20314 | MS.gene02630 | PPI |
| MS.gene33646 | MS.gene20314 | PPI |
| MS.gene026670 | MS.gene20314 | PPI |
| MS.gene93159 | MS.gene20314 | PPI |
| MS.gene31860 | MS.gene20314 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20314.t1 | MTR_5g015170 | 98.357 | 487 | 7 | 1 | 1 | 487 | 1 | 486 | 0.0 | 984 |
| MS.gene20314.t1 | MTR_4g097380 | 52.439 | 492 | 209 | 7 | 1 | 487 | 19 | 490 | 1.14e-176 | 505 |
| MS.gene20314.t1 | MTR_3g088885 | 46.437 | 435 | 209 | 11 | 1 | 431 | 1 | 415 | 3.13e-126 | 375 |
| MS.gene20314.t1 | MTR_7g022470 | 43.213 | 442 | 227 | 6 | 9 | 449 | 10 | 428 | 3.57e-122 | 365 |
| MS.gene20314.t1 | MTR_5g047260 | 45.598 | 443 | 211 | 8 | 9 | 450 | 17 | 430 | 1.64e-121 | 363 |
| MS.gene20314.t1 | MTR_1g029520 | 45.775 | 426 | 211 | 8 | 20 | 438 | 249 | 661 | 2.52e-119 | 365 |
| MS.gene20314.t1 | MTR_7g028050 | 42.958 | 426 | 212 | 7 | 9 | 429 | 1 | 400 | 1.12e-115 | 348 |
| MS.gene20314.t1 | MTR_5g011580 | 42.005 | 419 | 205 | 7 | 12 | 428 | 9 | 391 | 7.29e-106 | 323 |
| MS.gene20314.t1 | MTR_4g101950 | 41.587 | 416 | 207 | 6 | 12 | 426 | 9 | 389 | 9.75e-106 | 322 |
| MS.gene20314.t1 | MTR_5g047260 | 47.143 | 350 | 157 | 7 | 9 | 357 | 17 | 339 | 3.31e-96 | 295 |
| MS.gene20314.t1 | MTR_5g047260 | 46.708 | 319 | 143 | 6 | 9 | 326 | 17 | 309 | 9.84e-85 | 264 |
| MS.gene20314.t1 | MTR_7g028050 | 42.904 | 303 | 155 | 6 | 132 | 429 | 8 | 297 | 7.96e-78 | 247 |
| MS.gene20314.t1 | MTR_1g012740 | 43.137 | 102 | 51 | 2 | 293 | 394 | 54 | 148 | 1.72e-16 | 77.4 |
| MS.gene20314.t1 | MTR_1g012740 | 34.756 | 164 | 71 | 7 | 1 | 158 | 1 | 134 | 1.34e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20314.t1 | AT5G65890 | 48.178 | 494 | 223 | 9 | 1 | 482 | 2 | 474 | 1.16e-152 | 444 |
| MS.gene20314.t1 | AT5G65890 | 48.178 | 494 | 223 | 9 | 1 | 482 | 2 | 474 | 1.16e-152 | 444 |
| MS.gene20314.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.39e-133 | 392 |
| MS.gene20314.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.39e-133 | 392 |
| MS.gene20314.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.39e-133 | 392 |
| MS.gene20314.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.39e-133 | 392 |
| MS.gene20314.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.39e-133 | 392 |
| MS.gene20314.t1 | AT5G65890 | 46.652 | 448 | 202 | 9 | 52 | 485 | 1 | 425 | 2.65e-127 | 377 |
| MS.gene20314.t1 | AT5G65890 | 46.652 | 448 | 202 | 9 | 52 | 485 | 1 | 425 | 2.65e-127 | 377 |
| MS.gene20314.t1 | AT5G25320 | 40.980 | 510 | 267 | 11 | 1 | 486 | 1 | 500 | 3.54e-124 | 372 |
| MS.gene20314.t1 | AT1G69040 | 43.111 | 450 | 230 | 8 | 5 | 452 | 7 | 432 | 3.93e-122 | 365 |
| MS.gene20314.t1 | AT1G69040 | 43.111 | 450 | 230 | 8 | 5 | 452 | 3 | 428 | 5.06e-122 | 364 |
| MS.gene20314.t1 | AT2G03730 | 44.965 | 427 | 217 | 6 | 5 | 429 | 7 | 417 | 4.99e-119 | 357 |
| MS.gene20314.t1 | AT2G03730 | 44.965 | 427 | 217 | 6 | 5 | 429 | 7 | 417 | 4.99e-119 | 357 |
| MS.gene20314.t1 | AT5G25320 | 40.764 | 471 | 247 | 10 | 38 | 486 | 1 | 461 | 1.19e-114 | 346 |
| MS.gene20314.t1 | AT3G01990 | 44.630 | 419 | 206 | 6 | 10 | 428 | 17 | 409 | 1.86e-113 | 342 |
| MS.gene20314.t1 | AT3G01990 | 44.630 | 419 | 206 | 6 | 10 | 428 | 17 | 409 | 1.86e-113 | 342 |
| MS.gene20314.t1 | AT3G01990 | 44.286 | 420 | 206 | 6 | 10 | 428 | 17 | 409 | 2.87e-113 | 342 |
| MS.gene20314.t1 | AT3G01990 | 44.630 | 419 | 206 | 6 | 10 | 428 | 3 | 395 | 2.94e-113 | 341 |
| MS.gene20314.t1 | AT3G01990 | 44.630 | 419 | 206 | 6 | 10 | 428 | 3 | 395 | 2.94e-113 | 341 |
| MS.gene20314.t1 | AT3G01990 | 44.286 | 420 | 206 | 6 | 10 | 428 | 3 | 395 | 3.28e-113 | 341 |
| MS.gene20314.t1 | AT4G22780 | 44.231 | 416 | 196 | 6 | 12 | 426 | 9 | 389 | 1.73e-108 | 330 |
| MS.gene20314.t1 | AT4G22780 | 44.231 | 416 | 196 | 6 | 12 | 426 | 9 | 389 | 1.73e-108 | 330 |
| MS.gene20314.t1 | AT1G12420 | 41.928 | 415 | 209 | 5 | 12 | 426 | 9 | 391 | 1.16e-103 | 317 |
| MS.gene20314.t1 | AT5G65890 | 45.753 | 365 | 171 | 7 | 133 | 485 | 14 | 363 | 7.22e-99 | 302 |
| MS.gene20314.t1 | AT5G25320 | 43.799 | 379 | 182 | 9 | 1 | 356 | 1 | 371 | 1.13e-97 | 299 |
| MS.gene20314.t1 | AT3G01990 | 44.540 | 348 | 167 | 6 | 10 | 357 | 17 | 338 | 4.37e-92 | 284 |
| MS.gene20314.t1 | AT3G01990 | 44.290 | 359 | 168 | 7 | 10 | 362 | 17 | 349 | 4.95e-92 | 284 |
| MS.gene20314.t1 | AT3G01990 | 44.290 | 359 | 168 | 7 | 10 | 362 | 3 | 335 | 7.94e-92 | 283 |
| MS.gene20314.t1 | AT3G01990 | 44.268 | 314 | 148 | 6 | 10 | 322 | 17 | 304 | 8.48e-79 | 249 |
| MS.gene20314.t1 | AT3G01990 | 43.631 | 314 | 150 | 5 | 10 | 322 | 3 | 290 | 1.08e-78 | 248 |
| MS.gene20314.t1 | AT1G12420 | 39.031 | 351 | 182 | 5 | 76 | 426 | 1 | 319 | 7.69e-77 | 245 |
Find 132 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACAATTCCACTATATT+TGG | 0.129234 | 5.1:-7805753 | None:intergenic |
| ATGTTATGGTGCAGGGTTTA+AGG | 0.149741 | 5.1:+7805571 | MS.gene20314:intron |
| CTCAGATGGTGGATGGTTTA+TGG | 0.175362 | 5.1:+7803372 | MS.gene20314:CDS |
| CAACCGTCTTGGGTCCCTAA+TGG | 0.292246 | 5.1:-7804873 | None:intergenic |
| GTTGATAGTGCAAACAAGTA+TGG | 0.292710 | 5.1:+7803283 | MS.gene20314:CDS |
| CATCCAAACCTGGGCCCATT+AGG | 0.303226 | 5.1:+7804858 | MS.gene20314:CDS |
| CTGATCGGCTATGGATTTCT+TGG | 0.307288 | 5.1:-7805245 | None:intergenic |
| ACTCGTGTGATTCGTGAAAA+TGG | 0.308494 | 5.1:+7805639 | MS.gene20314:CDS |
| CAGTAGCGGCGATCACAAAA+AGG | 0.321891 | 5.1:+7805069 | MS.gene20314:CDS |
| GTCCCTAATGGGCCCAGGTT+TGG | 0.329663 | 5.1:-7804861 | None:intergenic |
| TATGGATTTCTTGGAACTAA+TGG | 0.329739 | 5.1:-7805236 | None:intergenic |
| TCTCCAGCTGTTCCTTTACC+TGG | 0.332514 | 5.1:-7804898 | None:intergenic |
| GAGAGAATCTCACGATTTAA+TGG | 0.338232 | 5.1:-7805961 | None:intergenic |
| CCCTGTCGGCATACATTAAC+TGG | 0.338582 | 5.1:-7805015 | None:intergenic |
| AACCGTCTTGGGTCCCTAAT+GGG | 0.339779 | 5.1:-7804872 | None:intergenic |
| TTTACCTGGGCCAACCGTCT+TGG | 0.354606 | 5.1:-7804884 | None:intergenic |
| CGATACAGTGTGTGTACTTA+GGG | 0.366686 | 5.1:+7805186 | MS.gene20314:CDS |
| AGAGAATCTCACGATTTAAT+GGG | 0.377098 | 5.1:-7805960 | None:intergenic |
| TTACCTGGGCCAACCGTCTT+GGG | 0.381992 | 5.1:-7804883 | None:intergenic |
| ATTTGCACTGAAAATAAAAC+AGG | 0.402096 | 5.1:+7805600 | MS.gene20314:CDS |
| GATACGCCAAGACTTTCTAT+TGG | 0.402236 | 5.1:+7805891 | MS.gene20314:CDS |
| TCTTGCAGGAGTACTATATA+AGG | 0.406529 | 5.1:+7805367 | MS.gene20314:intron |
| GGGGTATTGGGTGGTGAACT+TGG | 0.414673 | 5.1:+7805135 | MS.gene20314:CDS |
| CAAGAAATCCATAGCCGATC+AGG | 0.418699 | 5.1:+7805246 | MS.gene20314:CDS |
| TGTTATGGTGCAGGGTTTAA+GGG | 0.420837 | 5.1:+7805572 | MS.gene20314:intron |
| TCGATACAGTGTGTGTACTT+AGG | 0.426194 | 5.1:+7805185 | MS.gene20314:CDS |
| GCAGGCTACCCTTCCATTGT+GGG | 0.435839 | 5.1:-7804816 | None:intergenic |
| TTCTATGTCAGAAATCCTTC+AGG | 0.436835 | 5.1:+7805717 | MS.gene20314:CDS |
| ATCCAAACCTGGGCCCATTA+GGG | 0.444278 | 5.1:+7804859 | MS.gene20314:CDS |
| GGTGGTGAACTTGGTGTGTA+GGG | 0.445141 | 5.1:+7805144 | MS.gene20314:CDS |
| TCGTTCGGTGTGTGTGCGCC+CGG | 0.457740 | 5.1:-7804984 | None:intergenic |
| TCAATACCAAGGGTTGAGAT+TGG | 0.463256 | 5.1:+7805666 | MS.gene20314:CDS |
| GTATGCCGACAGGGACTATG+AGG | 0.470907 | 5.1:+7805024 | MS.gene20314:CDS |
| GTGAATATTCTGCGCAGCCT+TGG | 0.471293 | 5.1:-7804652 | None:intergenic |
| GGGTGGTGAACTTGGTGTGT+AGG | 0.481307 | 5.1:+7805143 | MS.gene20314:CDS |
| CCTTCTCAATTTGGTGCATG+AGG | 0.482265 | 5.1:-7803678 | None:intergenic |
| CCTTTCTCCCTTCTCACCAC+GGG | 0.483438 | 5.1:-7804933 | None:intergenic |
| GTAGAAGAGGCATCCAAACC+TGG | 0.484993 | 5.1:+7804848 | MS.gene20314:CDS |
| AGAAGTGAAACCAAATATAG+TGG | 0.487558 | 5.1:+7805743 | MS.gene20314:CDS |
| ATGAAGTACCTGATCGGCTA+TGG | 0.488476 | 5.1:-7805254 | None:intergenic |
| CGCATTCCAATCTCAACCCT+TGG | 0.489030 | 5.1:-7805672 | None:intergenic |
| CTTGGGTCCCTAATGGGCCC+AGG | 0.491215 | 5.1:-7804866 | None:intergenic |
| ATGTGCCACAAGAGCAAAAG+AGG | 0.493335 | 5.1:+7804607 | MS.gene20314:CDS |
| CTCCAGCTGTTCCTTTACCT+GGG | 0.494258 | 5.1:-7804897 | None:intergenic |
| CTGCTGATATTTCTGATAGT+AGG | 0.497761 | 5.1:-7804748 | None:intergenic |
| CCCGTGGTGAGAAGGGAGAA+AGG | 0.498977 | 5.1:+7804933 | MS.gene20314:CDS |
| AAGACGGTTGGCCCAGGTAA+AGG | 0.499864 | 5.1:+7804886 | MS.gene20314:CDS |
| TAACTGGTGAAGCCGTCGTT+CGG | 0.499936 | 5.1:-7804999 | None:intergenic |
| GATATTTCTGATAGTAGGCC+TGG | 0.500326 | 5.1:-7804743 | None:intergenic |
| TCCTTTCTCCCTTCTCACCA+CGG | 0.500399 | 5.1:-7804934 | None:intergenic |
| GGTTTCACTTCTTGACCTGA+AGG | 0.505004 | 5.1:-7805732 | None:intergenic |
| GAGGGCTGTCGCGCTTGTCA+TGG | 0.505888 | 5.1:+7805043 | MS.gene20314:CDS |
| CTCACGATTTAATGGGGCTA+AGG | 0.506228 | 5.1:-7805953 | None:intergenic |
| AAAACAAAGTGTTACCTGGC+TGG | 0.507971 | 5.1:-7802463 | None:intergenic |
| GGCCCAGGTAAAGGAACAGC+TGG | 0.508319 | 5.1:+7804895 | MS.gene20314:CDS |
| AAGTCATACATTTCCTCAGA+TGG | 0.511270 | 5.1:+7803358 | MS.gene20314:CDS |
| CTCAAAACAAATTGTGTCAA+AGG | 0.511876 | 5.1:+7804685 | MS.gene20314:CDS |
| AGGTTGAGAAACTTTGCTAC+CGG | 0.516920 | 5.1:+7804965 | MS.gene20314:CDS |
| ATCTGAGGAAATGTATGACT+TGG | 0.517740 | 5.1:-7803356 | None:intergenic |
| ATCAGAAATATCAGCAGTGT+TGG | 0.520345 | 5.1:+7804754 | MS.gene20314:CDS |
| CTCTTCTACGTAAAGAATGC+AGG | 0.520671 | 5.1:-7804834 | None:intergenic |
| ACTATTACTCGACGAGGAAG+AGG | 0.523834 | 5.1:-7805850 | None:intergenic |
| TTGCTTCCAATAGAAAGTCT+TGG | 0.523994 | 5.1:-7805897 | None:intergenic |
| CGGCATGGACCCACAATGGA+AGG | 0.526482 | 5.1:+7804807 | MS.gene20314:CDS |
| ACCAGTTAATGTATGCCGAC+AGG | 0.528524 | 5.1:+7805014 | MS.gene20314:CDS |
| ACATTTCCTCAGATGGTGGA+TGG | 0.530471 | 5.1:+7803365 | MS.gene20314:CDS |
| TTTCTATTGGAAGCAAGCTA+TGG | 0.532707 | 5.1:+7805904 | MS.gene20314:CDS |
| TGCAGGCTACCCTTCCATTG+TGG | 0.532960 | 5.1:-7804817 | None:intergenic |
| AGCAAGCTATGGTCTCAGAT+AGG | 0.533710 | 5.1:+7805915 | MS.gene20314:CDS |
| CTATTAGTAGATGCAAGGAC+AGG | 0.535659 | 5.1:+7805113 | MS.gene20314:CDS |
| TAGTGAAAATAGTAGTATAG+AGG | 0.539821 | 5.1:+7805869 | MS.gene20314:CDS |
| TTGATAGTGCAAACAAGTAT+GGG | 0.540593 | 5.1:+7803284 | MS.gene20314:CDS |
| CTGCATTCTTTACGTAGAAG+AGG | 0.548254 | 5.1:+7804835 | MS.gene20314:CDS |
| TATTAGTAGATGCAAGGACA+GGG | 0.549071 | 5.1:+7805114 | MS.gene20314:CDS |
| TGCCAGCTTGATCCGTGACG+TGG | 0.553021 | 5.1:-7803636 | None:intergenic |
| GGACCCAAGACGGTTGGCCC+AGG | 0.553645 | 5.1:+7804880 | MS.gene20314:CDS |
| TGTGGTGACCCGTGGTGAGA+AGG | 0.555690 | 5.1:+7804925 | MS.gene20314:CDS |
| CTGGCAAGAAACTCACTGAC+AGG | 0.555755 | 5.1:+7803653 | MS.gene20314:CDS |
| GGTTGAGAAACTTTGCTACC+GGG | 0.558145 | 5.1:+7804966 | MS.gene20314:CDS |
| CCAGTTAATGTATGCCGACA+GGG | 0.559631 | 5.1:+7805015 | MS.gene20314:CDS |
| GTCAAAGGAGAACACAGCAT+TGG | 0.563927 | 5.1:+7804700 | MS.gene20314:CDS |
| CTGAAAGATTACATCCAGCC+AGG | 0.565709 | 5.1:+7802449 | MS.gene20314:CDS |
| ACACAGCATTGGAGATGAGT+GGG | 0.569581 | 5.1:+7804711 | MS.gene20314:CDS |
| GATATTATTAGAGATGGTAC+AGG | 0.574494 | 5.1:+7803306 | MS.gene20314:CDS |
| GTGATCAGTAACTACATCTA+CGG | 0.580956 | 5.1:-7805793 | None:intergenic |
| CTCTCAGAACCCAAAGTGAG+AGG | 0.582014 | 5.1:+7805409 | MS.gene20314:CDS |
| GGATTTCTTGGAACTAATGG+CGG | 0.585123 | 5.1:-7805233 | None:intergenic |
| TCTCAGAACCCAAAGTGAGA+GGG | 0.585577 | 5.1:+7805410 | MS.gene20314:CDS |
| CATAAACCATCCACCATCTG+AGG | 0.586219 | 5.1:-7803371 | None:intergenic |
| CATTAGGGACCCAAGACGGT+TGG | 0.588293 | 5.1:+7804874 | MS.gene20314:CDS |
| GGCGCACACACACCGAACGA+CGG | 0.589313 | 5.1:+7804987 | MS.gene20314:CDS |
| TATATAAGGCACAAGTGGAA+TGG | 0.589958 | 5.1:+7805381 | MS.gene20314:CDS |
| AGGGAGAAAGGAACAATGTG+AGG | 0.594047 | 5.1:+7804945 | MS.gene20314:CDS |
| ATGTCACCTCAGCAACGGCA+TGG | 0.596380 | 5.1:+7804792 | MS.gene20314:CDS |
| CCTCATGCACCAAATTGAGA+AGG | 0.597211 | 5.1:+7803678 | MS.gene20314:CDS |
| CTGCAATGTCACCTCAGCAA+CGG | 0.599321 | 5.1:+7804787 | MS.gene20314:CDS |
| GTGGTGACCCGTGGTGAGAA+GGG | 0.599795 | 5.1:+7804926 | MS.gene20314:CDS |
| TTCCACGTCACGGATCAAGC+TGG | 0.601458 | 5.1:+7803634 | MS.gene20314:CDS |
| CAATGCAGTGTTCCACGTCA+CGG | 0.606463 | 5.1:+7803624 | MS.gene20314:intron |
| GTATGGGATATTATTAGAGA+TGG | 0.607389 | 5.1:+7803300 | MS.gene20314:CDS |
| AGTACTATATAAGGCACAAG+TGG | 0.608265 | 5.1:+7805376 | MS.gene20314:CDS |
| AAATGGACTATCAATACCAA+GGG | 0.608641 | 5.1:+7805656 | MS.gene20314:CDS |
| GATGATGAAGCAGAACTCCA+AGG | 0.609526 | 5.1:+7804635 | MS.gene20314:CDS |
| TAAAGACTGTACTGTTGTGA+AGG | 0.613082 | 5.1:+7802593 | MS.gene20314:CDS |
| TGTGTCTATTAGTAGATGCA+AGG | 0.614395 | 5.1:+7805108 | MS.gene20314:CDS |
| GCAACGGCATGGACCCACAA+TGG | 0.615665 | 5.1:+7804803 | MS.gene20314:CDS |
| AAAATGGACTATCAATACCA+AGG | 0.618601 | 5.1:+7805655 | MS.gene20314:CDS |
| TCATACATTTCCTCAGATGG+TGG | 0.619116 | 5.1:+7803361 | MS.gene20314:CDS |
| AACACAGCATTGGAGATGAG+TGG | 0.622791 | 5.1:+7804710 | MS.gene20314:CDS |
| TAGAAGAGGCATCCAAACCT+GGG | 0.631343 | 5.1:+7804849 | MS.gene20314:CDS |
| AGCATTGGAGATGAGTGGGA+TGG | 0.641022 | 5.1:+7804715 | MS.gene20314:CDS |
| AGGGTTGAGATTGGAATGCG+AGG | 0.641150 | 5.1:+7805675 | MS.gene20314:CDS |
| GGCCCATTAGGGACCCAAGA+CGG | 0.641597 | 5.1:+7804870 | MS.gene20314:CDS |
| GATGGTGGATGGTTTATGGA+CGG | 0.644975 | 5.1:+7803376 | MS.gene20314:CDS |
| TTAGTAGATGCAAGGACAGG+GGG | 0.646835 | 5.1:+7805116 | MS.gene20314:CDS |
| GGCATGGACCCACAATGGAA+GGG | 0.647070 | 5.1:+7804808 | MS.gene20314:CDS |
| ATGAGTGGGATGGATAGACC+AGG | 0.647189 | 5.1:+7804725 | MS.gene20314:CDS |
| GAGAGTGTTGTGGTGACCCG+TGG | 0.647944 | 5.1:+7804917 | MS.gene20314:CDS |
| GTGGGTCCATGCCGTTGCTG+AGG | 0.652331 | 5.1:-7804798 | None:intergenic |
| GTGACGATGAAGTACCTGAT+CGG | 0.654044 | 5.1:-7805260 | None:intergenic |
| ACAGCCCTCATAGTCCCTGT+CGG | 0.660415 | 5.1:-7805029 | None:intergenic |
| TGGAATGCGAGGAGATGATG+TGG | 0.665858 | 5.1:+7805686 | MS.gene20314:CDS |
| TATGCCGACAGGGACTATGA+GGG | 0.670406 | 5.1:+7805025 | MS.gene20314:CDS |
| GAGAATCTCACGATTTAATG+GGG | 0.681496 | 5.1:-7805959 | None:intergenic |
| ATTAGTAGATGCAAGGACAG+GGG | 0.684726 | 5.1:+7805115 | MS.gene20314:CDS |
| GATGTTCGAGAAAGCTTACG+AGG | 0.684804 | 5.1:-7805822 | None:intergenic |
| GCTTGTCATGGAGACAGTAG+CGG | 0.685049 | 5.1:+7805055 | MS.gene20314:CDS |
| ATGCGAGGAGATGATGTGGT+AGG | 0.689656 | 5.1:+7805690 | MS.gene20314:CDS |
| GGAACAGCTGGAGAGTGTTG+TGG | 0.690059 | 5.1:+7804907 | MS.gene20314:CDS |
| TGTATGACTTGGAAATGATG+AGG | 0.695973 | 5.1:-7803345 | None:intergenic |
| TTGTTGAGACAAGAGTGTGG+TGG | 0.733636 | 5.1:+7805768 | MS.gene20314:CDS |
| GAATTGTTGAGACAAGAGTG+TGG | 0.752168 | 5.1:+7805765 | MS.gene20314:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATGTAACAAATATT+TGG | - | chr5.1:7803947-7803966 | None:intergenic | 10.0% |
| !! | TACATAATTAATTAACTAAT+CGG | - | chr5.1:7802506-7802525 | None:intergenic | 10.0% |
| !! | TTCATAAAATATAACAAAAA+AGG | + | chr5.1:7802783-7802802 | MS.gene20314:intron | 10.0% |
| !!! | TATTTTTATTTCACAAAAAA+TGG | - | chr5.1:7804059-7804078 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTTATAAGT+AGG | - | chr5.1:7803136-7803155 | None:intergenic | 10.0% |
| !! | AATAATAAGGATACATAAAA+AGG | - | chr5.1:7805518-7805537 | None:intergenic | 15.0% |
| !! | ATTAGTATTAAAACTAAAGT+CGG | + | chr5.1:7802756-7802775 | MS.gene20314:intron | 15.0% |
| !! | TAAATTTCTATATACAAAAG+AGG | - | chr5.1:7802698-7802717 | None:intergenic | 15.0% |
| !!! | GTACAAAATATTTTATTGAT+GGG | - | chr5.1:7804346-7804365 | None:intergenic | 15.0% |
| !!! | GTAGAAAATATTTTATTGAT+AGG | - | chr5.1:7803716-7803735 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCATAAAATTAT+CGG | + | chr5.1:7804458-7804477 | MS.gene20314:intron | 15.0% |
| !!! | TCATTTTCTTAGATAATTAT+CGG | + | chr5.1:7803828-7803847 | MS.gene20314:intron | 15.0% |
| !!! | TTTAGTTTTAATACTAATAC+AGG | - | chr5.1:7802754-7802773 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGTTGCTAAAG+AGG | + | chr5.1:7803148-7803167 | MS.gene20314:intron | 20.0% |
| !! | AAAATTAAGTCAAAATGCTA+TGG | - | chr5.1:7803198-7803217 | None:intergenic | 20.0% |
| !! | AAATATGAAGAAAAAAGAGA+TGG | + | chr5.1:7804074-7804093 | MS.gene20314:intron | 20.0% |
| !! | ATGGTATTTATATTAGATCT+GGG | + | chr5.1:7804184-7804203 | MS.gene20314:intron | 20.0% |
| !! | ATTATCATTATCATGGTTTA+TGG | - | chr5.1:7803458-7803477 | None:intergenic | 20.0% |
| !! | TATGGTATTTATATTAGATC+TGG | + | chr5.1:7804183-7804202 | MS.gene20314:intron | 20.0% |
| !! | TTGATCAATTATCATTATCA+TGG | - | chr5.1:7803465-7803484 | None:intergenic | 20.0% |
| !!! | ATATAGAAATTTAATTTCGC+TGG | + | chr5.1:7802705-7802724 | MS.gene20314:intron | 20.0% |
| !!! | GGTACAAAATATTTTATTGA+TGG | - | chr5.1:7804347-7804366 | None:intergenic | 20.0% |
| !!! | TTATTTTCTCAAATTGCTAT+TGG | - | chr5.1:7802881-7802900 | None:intergenic | 20.0% |
| ! | AAAAGGAAAATCTTAATGCT+AGG | - | chr5.1:7805501-7805520 | None:intergenic | 25.0% |
| ! | ATACAGGAAAACAATGTTAA+AGG | - | chr5.1:7803431-7803450 | None:intergenic | 25.0% |
| ! | ATTTGCACTGAAAATAAAAC+AGG | + | chr5.1:7805600-7805619 | MS.gene20314:CDS | 25.0% |
| ! | CTAACAAGATCTTAAACATA+AGG | - | chr5.1:7802913-7802932 | None:intergenic | 25.0% |
| ! | GATATCAGCAAAAAAATTAG+TGG | + | chr5.1:7803557-7803576 | MS.gene20314:intron | 25.0% |
| ! | TACACATTCAATCATAAGTA+TGG | - | chr5.1:7804368-7804387 | None:intergenic | 25.0% |
| ! | TAGTGAAAATAGTAGTATAG+AGG | + | chr5.1:7805869-7805888 | MS.gene20314:CDS | 25.0% |
| ! | TGCATTATGGCATAATAATA+AGG | - | chr5.1:7805531-7805550 | None:intergenic | 25.0% |
| ! | TGGATCAATGTAATTAATGA+CGG | - | chr5.1:7805345-7805364 | None:intergenic | 25.0% |
| ! | TGGTATTTATATTAGATCTG+GGG | + | chr5.1:7804185-7804204 | MS.gene20314:intron | 25.0% |
| ! | TTCTGATAAAAAAACGTGTT+TGG | - | chr5.1:7803076-7803095 | None:intergenic | 25.0% |
| !! | CTTATGTTTAAGATCTTGTT+AGG | + | chr5.1:7802911-7802930 | MS.gene20314:intron | 25.0% |
| !! | TTTTCAAACAAGATGATATG+TGG | + | chr5.1:7803974-7803993 | MS.gene20314:intron | 25.0% |
| !!! | ATCTTAATGCTAGGTTTTAT+AGG | - | chr5.1:7805492-7805511 | None:intergenic | 25.0% |
| !!! | GTGGTTTTTTATGTATGTTA+TGG | + | chr5.1:7805557-7805576 | MS.gene20314:intron | 25.0% |
| ACAGATGTGTTTATGTTCAT+AGG | + | chr5.1:7804294-7804313 | MS.gene20314:intron | 30.0% | |
| ACTGTATCGAAAAACAACTT+GGG | - | chr5.1:7805175-7805194 | None:intergenic | 30.0% | |
| AGAAGTGAAACCAAATATAG+TGG | + | chr5.1:7805743-7805762 | MS.gene20314:CDS | 30.0% | |
| AGACAAAAACCTTCTCAATT+TGG | - | chr5.1:7803690-7803709 | None:intergenic | 30.0% | |
| ATCTTGACAAAATATTTGGG+GGG | + | chr5.1:7803919-7803938 | MS.gene20314:intron | 30.0% | |
| ATGAAGAAAAAAGAGATGGA+AGG | + | chr5.1:7804078-7804097 | MS.gene20314:intron | 30.0% | |
| ATTATTGTCTATACAAACCC+TGG | - | chr5.1:7802568-7802587 | None:intergenic | 30.0% | |
| CACATATTCAATCAGAAGTA+TGG | - | chr5.1:7803738-7803757 | None:intergenic | 30.0% | |
| CACTACAAAACAAGACATAA+AGG | - | chr5.1:7802648-7802667 | None:intergenic | 30.0% | |
| CAGCAAAAAAATTAGTGGTT+CGG | + | chr5.1:7803562-7803581 | MS.gene20314:intron | 30.0% | |
| CATGGTTTATGGAAAAATAC+AGG | - | chr5.1:7803447-7803466 | None:intergenic | 30.0% | |
| CGGATCTTGACAAAATATTT+GGG | + | chr5.1:7803916-7803935 | MS.gene20314:intron | 30.0% | |
| CTATGGTTACTAGTAACTTA+TGG | - | chr5.1:7803181-7803200 | None:intergenic | 30.0% | |
| CTCAAAACAAATTGTGTCAA+AGG | + | chr5.1:7804685-7804704 | MS.gene20314:CDS | 30.0% | |
| CTCAACAATTCCACTATATT+TGG | - | chr5.1:7805756-7805775 | None:intergenic | 30.0% | |
| CTGATAGTATCTGTGTAATA+TGG | + | chr5.1:7804165-7804184 | MS.gene20314:intron | 30.0% | |
| CTTAATAGAGTTACTTGTGT+TGG | + | chr5.1:7803017-7803036 | MS.gene20314:intron | 30.0% | |
| GATATTATTAGAGATGGTAC+AGG | + | chr5.1:7803306-7803325 | MS.gene20314:CDS | 30.0% | |
| GATCTTGACAAAATATTTGG+GGG | + | chr5.1:7803918-7803937 | MS.gene20314:intron | 30.0% | |
| GGATCTTGACAAAATATTTG+GGG | + | chr5.1:7803917-7803936 | MS.gene20314:intron | 30.0% | |
| GGTATTTATATTAGATCTGG+GGG | + | chr5.1:7804186-7804205 | MS.gene20314:intron | 30.0% | |
| GTATGGGATATTATTAGAGA+TGG | + | chr5.1:7803300-7803319 | MS.gene20314:CDS | 30.0% | |
| GTATTTATATTAGATCTGGG+GGG | + | chr5.1:7804187-7804206 | MS.gene20314:intron | 30.0% | |
| TATGGATTTCTTGGAACTAA+TGG | - | chr5.1:7805239-7805258 | None:intergenic | 30.0% | |
| TGAAGAAAAAAGAGATGGAA+GGG | + | chr5.1:7804079-7804098 | MS.gene20314:intron | 30.0% | |
| TTCTCTATTGTTTCAATCAG+TGG | + | chr5.1:7803893-7803912 | MS.gene20314:intron | 30.0% | |
| TTTATGTATGTTATGGTGCA+GGG | + | chr5.1:7805564-7805583 | MS.gene20314:intron | 30.0% | |
| ! | ACATAAAACAAAGTGTTACC+TGG | - | chr5.1:7802470-7802489 | None:intergenic | 30.0% |
| ! | GCTGATATCATATGATAATG+TGG | - | chr5.1:7803546-7803565 | None:intergenic | 30.0% |
| ! | TAATTTTCTGCTAATTGCCA+GGG | + | chr5.1:7802548-7802567 | MS.gene20314:intron | 30.0% |
| ! | TTAATTTTCTGCTAATTGCC+AGG | + | chr5.1:7802547-7802566 | MS.gene20314:intron | 30.0% |
| ! | TTTTATGTATGTTATGGTGC+AGG | + | chr5.1:7805563-7805582 | MS.gene20314:intron | 30.0% |
| !! | AAAATGGACTATCAATACCA+AGG | + | chr5.1:7805655-7805674 | MS.gene20314:CDS | 30.0% |
| !! | AAATGGACTATCAATACCAA+GGG | + | chr5.1:7805656-7805675 | MS.gene20314:CDS | 30.0% |
| !! | TGAAGTTGTTTTGCGTTATT+TGG | - | chr5.1:7804118-7804137 | None:intergenic | 30.0% |
| !! | TTGATAGTGCAAACAAGTAT+GGG | + | chr5.1:7803284-7803303 | MS.gene20314:CDS | 30.0% |
| !!! | TCGGTTTTAATGTGTCATTT+TGG | + | chr5.1:7804477-7804496 | MS.gene20314:intron | 30.0% |
| !!! | TCGGTTTTTATGTGTCATTT+CGG | + | chr5.1:7803847-7803866 | MS.gene20314:intron | 30.0% |
| AAGTCATACATTTCCTCAGA+TGG | + | chr5.1:7803358-7803377 | MS.gene20314:CDS | 35.0% | |
| ACACCAGTTTAGAAATTGGA+AGG | + | chr5.1:7802808-7802827 | MS.gene20314:intron | 35.0% | |
| AGATGTGTGTTTATGTTCAC+AGG | + | chr5.1:7804580-7804599 | MS.gene20314:intron | 35.0% | |
| AGTACTATATAAGGCACAAG+TGG | + | chr5.1:7805376-7805395 | MS.gene20314:CDS | 35.0% | |
| AGTGTTTATCCTTCTTAGAG+TGG | + | chr5.1:7803401-7803420 | MS.gene20314:intron | 35.0% | |
| ATCAGAAATATCAGCAGTGT+TGG | + | chr5.1:7804754-7804773 | MS.gene20314:CDS | 35.0% | |
| ATCTGAGGAAATGTATGACT+TGG | - | chr5.1:7803359-7803378 | None:intergenic | 35.0% | |
| ATTATGCCATAATGCACTGA+TGG | + | chr5.1:7805535-7805554 | MS.gene20314:intron | 35.0% | |
| CACTATCAACCTGTAAATGT+CGG | - | chr5.1:7803273-7803292 | None:intergenic | 35.0% | |
| CACTGTATCGAAAAACAACT+TGG | - | chr5.1:7805176-7805195 | None:intergenic | 35.0% | |
| CTTCATATGATTGAAACCAG+TGG | - | chr5.1:7804247-7804266 | None:intergenic | 35.0% | |
| GCGGATCTTGACAAAATATT+TGG | + | chr5.1:7803915-7803934 | MS.gene20314:intron | 35.0% | |
| GTGATCAGTAACTACATCTA+CGG | - | chr5.1:7805796-7805815 | None:intergenic | 35.0% | |
| TAAAGACTGTACTGTTGTGA+AGG | + | chr5.1:7802593-7802612 | MS.gene20314:CDS | 35.0% | |
| TATATAAGGCACAAGTGGAA+TGG | + | chr5.1:7805381-7805400 | MS.gene20314:CDS | 35.0% | |
| TATCGAAAAACAACTTGGGA+CGG | - | chr5.1:7805171-7805190 | None:intergenic | 35.0% | |
| TATTAGTAGATGCAAGGACA+GGG | + | chr5.1:7805114-7805133 | MS.gene20314:CDS | 35.0% | |
| TCTATTGTTTCAATCAGTGG+CGG | + | chr5.1:7803896-7803915 | MS.gene20314:intron | 35.0% | |
| TGTGTCTATTAGTAGATGCA+AGG | + | chr5.1:7805108-7805127 | MS.gene20314:CDS | 35.0% | |
| TTCTATGTCAGAAATCCTTC+AGG | + | chr5.1:7805717-7805736 | MS.gene20314:CDS | 35.0% | |
| TTGCTTCCAATAGAAAGTCT+TGG | - | chr5.1:7805900-7805919 | None:intergenic | 35.0% | |
| TTTCTATTGGAAGCAAGCTA+TGG | + | chr5.1:7805904-7805923 | MS.gene20314:CDS | 35.0% | |
| ! | AAAGGAATTCCACTCTAAGA+AGG | - | chr5.1:7803413-7803432 | None:intergenic | 35.0% |
| ! | ATTTTCACTATTACTCGACG+AGG | - | chr5.1:7805859-7805878 | None:intergenic | 35.0% |
| ! | CTGCTGATATTTCTGATAGT+AGG | - | chr5.1:7804751-7804770 | None:intergenic | 35.0% |
| ! | TGTATGACTTGGAAATGATG+AGG | - | chr5.1:7803348-7803367 | None:intergenic | 35.0% |
| ! | TGTGTTGGTATTGTGTTAAG+AGG | + | chr5.1:7803032-7803051 | MS.gene20314:intron | 35.0% |
| !! | ATTGTGTTAAGAGGTATCAG+AGG | + | chr5.1:7803041-7803060 | MS.gene20314:intron | 35.0% |
| !! | GTTGATAGTGCAAACAAGTA+TGG | + | chr5.1:7803283-7803302 | MS.gene20314:CDS | 35.0% |
| !! | TCTTGCAGGAGTACTATATA+AGG | + | chr5.1:7805367-7805386 | MS.gene20314:intron | 35.0% |
| !! | TTTGGTGTTTATGTCGTGTT+CGG | + | chr5.1:7804495-7804514 | MS.gene20314:intron | 35.0% |
| AAACCACCATCAGTGCATTA+TGG | - | chr5.1:7805544-7805563 | None:intergenic | 40.0% | |
| ACTCGTGTGATTCGTGAAAA+TGG | + | chr5.1:7805639-7805658 | MS.gene20314:CDS | 40.0% | |
| AGGTTGAGAAACTTTGCTAC+CGG | + | chr5.1:7804965-7804984 | MS.gene20314:CDS | 40.0% | |
| ATGTTATGGTGCAGGGTTTA+AGG | + | chr5.1:7805571-7805590 | MS.gene20314:intron | 40.0% | |
| ATTAGTAGATGCAAGGACAG+GGG | + | chr5.1:7805115-7805134 | MS.gene20314:CDS | 40.0% | |
| CAAGATGATATGTGGTGTGT+TGG | + | chr5.1:7803982-7804001 | MS.gene20314:intron | 40.0% | |
| CAGAGGCTACAAAATCACAA+TGG | - | chr5.1:7802940-7802959 | None:intergenic | 40.0% | |
| CATATGATTGAAACCAGTGG+CGG | - | chr5.1:7804244-7804263 | None:intergenic | 40.0% | |
| CGATACAGTGTGTGTACTTA+GGG | + | chr5.1:7805186-7805205 | MS.gene20314:CDS | 40.0% | |
| CTATTAGTAGATGCAAGGAC+AGG | + | chr5.1:7805113-7805132 | MS.gene20314:CDS | 40.0% | |
| CTCTTCTACGTAAAGAATGC+AGG | - | chr5.1:7804837-7804856 | None:intergenic | 40.0% | |
| CTGCATTCTTTACGTAGAAG+AGG | + | chr5.1:7804835-7804854 | MS.gene20314:CDS | 40.0% | |
| GAATTGTTGAGACAAGAGTG+TGG | + | chr5.1:7805765-7805784 | MS.gene20314:CDS | 40.0% | |
| GATACGCCAAGACTTTCTAT+TGG | + | chr5.1:7805891-7805910 | MS.gene20314:CDS | 40.0% | |
| GATGGGAAGAGACAAAAAAG+TGG | - | chr5.1:7804329-7804348 | None:intergenic | 40.0% | |
| GATTTGTCGTGATTTCACAG+AGG | - | chr5.1:7802957-7802976 | None:intergenic | 40.0% | |
| GGACACACCAGTTTAGAAAT+TGG | + | chr5.1:7802804-7802823 | MS.gene20314:intron | 40.0% | |
| GGATTTCTTGGAACTAATGG+CGG | - | chr5.1:7805236-7805255 | None:intergenic | 40.0% | |
| GTGCCTTCCAATTTCTAAAC+TGG | - | chr5.1:7802814-7802833 | None:intergenic | 40.0% | |
| TACATTGATCCATGTCTTGC+AGG | + | chr5.1:7805353-7805372 | MS.gene20314:intron | 40.0% | |
| TATAGTACTCCTGCAAGACA+TGG | - | chr5.1:7805365-7805384 | None:intergenic | 40.0% | |
| TCAATACCAAGGGTTGAGAT+TGG | + | chr5.1:7805666-7805685 | MS.gene20314:CDS | 40.0% | |
| TCATACATTTCCTCAGATGG+TGG | + | chr5.1:7803361-7803380 | MS.gene20314:CDS | 40.0% | |
| TCGATACAGTGTGTGTACTT+AGG | + | chr5.1:7805185-7805204 | MS.gene20314:CDS | 40.0% | |
| TGAATGTTGCCGACATTTAC+AGG | + | chr5.1:7803261-7803280 | MS.gene20314:intron | 40.0% | |
| TGTTATGGTGCAGGGTTTAA+GGG | + | chr5.1:7805572-7805591 | MS.gene20314:intron | 40.0% | |
| TTCACAAAAAATGGCCATGC+AGG | - | chr5.1:7804050-7804069 | None:intergenic | 40.0% | |
| ! | AAAACAAAGTGTTACCTGGC+TGG | - | chr5.1:7802466-7802485 | None:intergenic | 40.0% |
| ! | AAGCTTTTCCCTCTCACTTT+GGG | - | chr5.1:7805421-7805440 | None:intergenic | 40.0% |
| ! | ATCACAAAAAGGGGTGTGAT+GGG | + | chr5.1:7805080-7805099 | MS.gene20314:CDS | 40.0% |
| ! | GATATTTCTGATAGTAGGCC+TGG | - | chr5.1:7804746-7804765 | None:intergenic | 40.0% |
| ! | GGATACCACCTTTTGATCAA+CGG | + | chr5.1:7804017-7804036 | MS.gene20314:intron | 40.0% |
| ! | TAAGCTTTTCCCTCTCACTT+TGG | - | chr5.1:7805422-7805441 | None:intergenic | 40.0% |
| ! | TATGTCCTCTTTTGCTCTTG+TGG | - | chr5.1:7804615-7804634 | None:intergenic | 40.0% |
| !! | TTAAGAGGTATCAGAGGTGT+TGG | + | chr5.1:7803047-7803066 | MS.gene20314:intron | 40.0% |
| ACCAGTTAATGTATGCCGAC+AGG | + | chr5.1:7805014-7805033 | MS.gene20314:CDS | 45.0% | |
| ACTATTACTCGACGAGGAAG+AGG | - | chr5.1:7805853-7805872 | None:intergenic | 45.0% | |
| AGCAAGCTATGGTCTCAGAT+AGG | + | chr5.1:7805915-7805934 | MS.gene20314:CDS | 45.0% | |
| AGGGAGAAAGGAACAATGTG+AGG | + | chr5.1:7804945-7804964 | MS.gene20314:CDS | 45.0% | |
| AGTAGCGGCGATCACAAAAA+GGG | + | chr5.1:7805070-7805089 | MS.gene20314:CDS | 45.0% | |
| ATGTGCCACAAGAGCAAAAG+AGG | + | chr5.1:7804607-7804626 | MS.gene20314:CDS | 45.0% | |
| CAAGAAATCCATAGCCGATC+AGG | + | chr5.1:7805246-7805265 | MS.gene20314:CDS | 45.0% | |
| CATAAACCATCCACCATCTG+AGG | - | chr5.1:7803374-7803393 | None:intergenic | 45.0% | |
| CCAGTTAATGTATGCCGACA+GGG | + | chr5.1:7805015-7805034 | MS.gene20314:CDS | 45.0% | |
| CCTCATGCACCAAATTGAGA+AGG | + | chr5.1:7803678-7803697 | MS.gene20314:CDS | 45.0% | |
| CTGAAAGATTACATCCAGCC+AGG | + | chr5.1:7802449-7802468 | MS.gene20314:CDS | 45.0% | |
| CTGATCGGCTATGGATTTCT+TGG | - | chr5.1:7805248-7805267 | None:intergenic | 45.0% | |
| GACTCGAACCGTTGATCAAA+AGG | - | chr5.1:7804028-7804047 | None:intergenic | 45.0% | |
| GATGATGAAGCAGAACTCCA+AGG | + | chr5.1:7804635-7804654 | MS.gene20314:CDS | 45.0% | |
| GATGTTCGAGAAAGCTTACG+AGG | - | chr5.1:7805825-7805844 | None:intergenic | 45.0% | |
| GGTTGAGAAACTTTGCTACC+GGG | + | chr5.1:7804966-7804985 | MS.gene20314:CDS | 45.0% | |
| GGTTTCACTTCTTGACCTGA+AGG | - | chr5.1:7805735-7805754 | None:intergenic | 45.0% | |
| GTCAAAGGAGAACACAGCAT+TGG | + | chr5.1:7804700-7804719 | MS.gene20314:CDS | 45.0% | |
| GTCATATCTAATGTCCGCGT+CGG | - | chr5.1:7802851-7802870 | None:intergenic | 45.0% | |
| TCGAACCGTTGATCAAAAGG+TGG | - | chr5.1:7804025-7804044 | None:intergenic | 45.0% | |
| TCTCAGAACCCAAAGTGAGA+GGG | + | chr5.1:7805410-7805429 | MS.gene20314:CDS | 45.0% | |
| TGTATGACACTGACACACGT+TGG | - | chr5.1:7803769-7803788 | None:intergenic | 45.0% | |
| TTAGTAGATGCAAGGACAGG+GGG | + | chr5.1:7805116-7805135 | MS.gene20314:CDS | 45.0% | |
| ! | AACACAGCATTGGAGATGAG+TGG | + | chr5.1:7804710-7804729 | MS.gene20314:CDS | 45.0% |
| ! | ACACAGCATTGGAGATGAGT+GGG | + | chr5.1:7804711-7804730 | MS.gene20314:CDS | 45.0% |
| ! | ATGAAGTACCTGATCGGCTA+TGG | - | chr5.1:7805257-7805276 | None:intergenic | 45.0% |
| ! | ATGCCATAATGCACTGATGG+TGG | + | chr5.1:7805538-7805557 | MS.gene20314:intron | 45.0% |
| ! | CGGTTCTGATACAAGTTGTG+TGG | + | chr5.1:7803582-7803601 | MS.gene20314:intron | 45.0% |
| ! | GATCACAAAAAGGGGTGTGA+TGG | + | chr5.1:7805079-7805098 | MS.gene20314:CDS | 45.0% |
| ! | GTGACGATGAAGTACCTGAT+CGG | - | chr5.1:7805263-7805282 | None:intergenic | 45.0% |
| ! | TTGTTGAGACAAGAGTGTGG+TGG | + | chr5.1:7805768-7805787 | MS.gene20314:CDS | 45.0% |
| !! | ACATTTCCTCAGATGGTGGA+TGG | + | chr5.1:7803365-7803384 | MS.gene20314:CDS | 45.0% |
| !! | CAGGATGACGTCATTTTCAG+AGG | - | chr5.1:7802735-7802754 | None:intergenic | 45.0% |
| !! | CCTTCTCAATTTGGTGCATG+AGG | - | chr5.1:7803681-7803700 | None:intergenic | 45.0% |
| !! | CTCAGATGGTGGATGGTTTA+TGG | + | chr5.1:7803372-7803391 | MS.gene20314:CDS | 45.0% |
| !! | GATGGTGGATGGTTTATGGA+CGG | + | chr5.1:7803376-7803395 | MS.gene20314:CDS | 45.0% |
| !! | GTGTGTTGGTTCATAGTGCT+TGG | + | chr5.1:7803996-7804015 | MS.gene20314:intron | 45.0% |
| !! | TAGAAGAGGCATCCAAACCT+GGG | + | chr5.1:7804849-7804868 | MS.gene20314:CDS | 45.0% |
| !! | TTCGGTGTTGATGTCGTGTT+TGG | + | chr5.1:7803865-7803884 | MS.gene20314:intron | 45.0% |
| AACCGTCTTGGGTCCCTAAT+GGG | - | chr5.1:7804875-7804894 | None:intergenic | 50.0% | |
| AGGGTTGAGATTGGAATGCG+AGG | + | chr5.1:7805675-7805694 | MS.gene20314:CDS | 50.0% | |
| ATAAAGCACAGACACCGACG+CGG | + | chr5.1:7802834-7802853 | MS.gene20314:intron | 50.0% | |
| ATCCAAACCTGGGCCCATTA+GGG | + | chr5.1:7804859-7804878 | MS.gene20314:CDS | 50.0% | |
| ATGAGTGGGATGGATAGACC+AGG | + | chr5.1:7804725-7804744 | MS.gene20314:CDS | 50.0% | |
| ATGCGAGGAGATGATGTGGT+AGG | + | chr5.1:7805690-7805709 | MS.gene20314:CDS | 50.0% | |
| CAATGCAGTGTTCCACGTCA+CGG | + | chr5.1:7803624-7803643 | MS.gene20314:intron | 50.0% | |
| CAGTAGCGGCGATCACAAAA+AGG | + | chr5.1:7805069-7805088 | MS.gene20314:CDS | 50.0% | |
| CCCTGTCGGCATACATTAAC+TGG | - | chr5.1:7805018-7805037 | None:intergenic | 50.0% | |
| CGCATTCCAATCTCAACCCT+TGG | - | chr5.1:7805675-7805694 | None:intergenic | 50.0% | |
| CTCCAGCTGTTCCTTTACCT+GGG | - | chr5.1:7804900-7804919 | None:intergenic | 50.0% | |
| CTCTCAGAACCCAAAGTGAG+AGG | + | chr5.1:7805409-7805428 | MS.gene20314:CDS | 50.0% | |
| CTGCAATGTCACCTCAGCAA+CGG | + | chr5.1:7804787-7804806 | MS.gene20314:CDS | 50.0% | |
| CTGGCAAGAAACTCACTGAC+AGG | + | chr5.1:7803653-7803672 | MS.gene20314:CDS | 50.0% | |
| GACATGTGCCAGTGTTGTGT+CGG | - | chr5.1:7804422-7804441 | None:intergenic | 50.0% | |
| GCTTGTCATGGAGACAGTAG+CGG | + | chr5.1:7805055-7805074 | MS.gene20314:CDS | 50.0% | |
| GTAGCGGCGATCACAAAAAG+GGG | + | chr5.1:7805071-7805090 | MS.gene20314:CDS | 50.0% | |
| GTCATACACCGACACAACAC+TGG | + | chr5.1:7804411-7804430 | MS.gene20314:intron | 50.0% | |
| GTGAATATTCTGCGCAGCCT+TGG | - | chr5.1:7804655-7804674 | None:intergenic | 50.0% | |
| TAACTGGTGAAGCCGTCGTT+CGG | - | chr5.1:7805002-7805021 | None:intergenic | 50.0% | |
| TATGCCGACAGGGACTATGA+GGG | + | chr5.1:7805025-7805044 | MS.gene20314:CDS | 50.0% | |
| TCCTTTCTCCCTTCTCACCA+CGG | - | chr5.1:7804937-7804956 | None:intergenic | 50.0% | |
| TCTCCAGCTGTTCCTTTACC+TGG | - | chr5.1:7804901-7804920 | None:intergenic | 50.0% | |
| TGGAATGCGAGGAGATGATG+TGG | + | chr5.1:7805686-7805705 | MS.gene20314:CDS | 50.0% | |
| TTCAATTTCCGCTGCGACAC+AGG | + | chr5.1:7804134-7804153 | MS.gene20314:intron | 50.0% | |
| ! | AGCATTGGAGATGAGTGGGA+TGG | + | chr5.1:7804715-7804734 | MS.gene20314:CDS | 50.0% |
| !! | AAACCAGTGGCGGATCTTCT+TGG | - | chr5.1:7804234-7804253 | None:intergenic | 50.0% |
| !! | AACCAGTGGCGGATCTTCTT+GGG | - | chr5.1:7804233-7804252 | None:intergenic | 50.0% |
| !! | ATGCAAGGACAGGGGGTATT+GGG | + | chr5.1:7805123-7805142 | MS.gene20314:CDS | 50.0% |
| !! | GGTGGTGAACTTGGTGTGTA+GGG | + | chr5.1:7805144-7805163 | MS.gene20314:CDS | 50.0% |
| !! | GTAGAAGAGGCATCCAAACC+TGG | + | chr5.1:7804848-7804867 | MS.gene20314:CDS | 50.0% |
| AAGTTGTGCCTGTGTCGCAG+CGG | - | chr5.1:7804145-7804164 | None:intergenic | 55.0% | |
| ACAGCCCTCATAGTCCCTGT+CGG | - | chr5.1:7805032-7805051 | None:intergenic | 55.0% | |
| ATGTCACCTCAGCAACGGCA+TGG | + | chr5.1:7804792-7804811 | MS.gene20314:CDS | 55.0% | |
| ATTAGATCTGGGGGGAGCCA+TGG | + | chr5.1:7804195-7804214 | MS.gene20314:intron | 55.0% | |
| CAACCGTCTTGGGTCCCTAA+TGG | - | chr5.1:7804876-7804895 | None:intergenic | 55.0% | |
| CATCCAAACCTGGGCCCATT+AGG | + | chr5.1:7804858-7804877 | MS.gene20314:CDS | 55.0% | |
| CATTAGGGACCCAAGACGGT+TGG | + | chr5.1:7804874-7804893 | MS.gene20314:CDS | 55.0% | |
| CCTTTCTCCCTTCTCACCAC+GGG | - | chr5.1:7804936-7804955 | None:intergenic | 55.0% | |
| GCAGGCTACCCTTCCATTGT+GGG | - | chr5.1:7804819-7804838 | None:intergenic | 55.0% | |
| GGCATGGACCCACAATGGAA+GGG | + | chr5.1:7804808-7804827 | MS.gene20314:CDS | 55.0% | |
| GTATGCCGACAGGGACTATG+AGG | + | chr5.1:7805024-7805043 | MS.gene20314:CDS | 55.0% | |
| TCAACGGTTCGAGTCCTGCA+TGG | + | chr5.1:7804033-7804052 | MS.gene20314:intron | 55.0% | |
| TGCAGGCTACCCTTCCATTG+TGG | - | chr5.1:7804820-7804839 | None:intergenic | 55.0% | |
| TTACCTGGGCCAACCGTCTT+GGG | - | chr5.1:7804886-7804905 | None:intergenic | 55.0% | |
| TTCCACGTCACGGATCAAGC+TGG | + | chr5.1:7803634-7803653 | MS.gene20314:CDS | 55.0% | |
| TTTACCTGGGCCAACCGTCT+TGG | - | chr5.1:7804887-7804906 | None:intergenic | 55.0% | |
| ! | AAGACGGTTGGCCCAGGTAA+AGG | + | chr5.1:7804886-7804905 | MS.gene20314:CDS | 55.0% |
| ! | GATGCAAGGACAGGGGGTAT+TGG | + | chr5.1:7805122-7805141 | MS.gene20314:CDS | 55.0% |
| !! | GGAACAGCTGGAGAGTGTTG+TGG | + | chr5.1:7804907-7804926 | MS.gene20314:CDS | 55.0% |
| !! | GGGGTATTGGGTGGTGAACT+TGG | + | chr5.1:7805135-7805154 | MS.gene20314:CDS | 55.0% |
| !! | GGGTGGTGAACTTGGTGTGT+AGG | + | chr5.1:7805143-7805162 | MS.gene20314:CDS | 55.0% |
| CCCGTGGTGAGAAGGGAGAA+AGG | + | chr5.1:7804933-7804952 | MS.gene20314:CDS | 60.0% | |
| CGGATCTTCTTGGGAGCCCA+TGG | - | chr5.1:7804224-7804243 | None:intergenic | 60.0% | |
| CGGCATGGACCCACAATGGA+AGG | + | chr5.1:7804807-7804826 | MS.gene20314:CDS | 60.0% | |
| CTCCCAAGAAGATCCGCCAC+TGG | + | chr5.1:7804228-7804247 | MS.gene20314:intron | 60.0% | |
| GCAACGGCATGGACCCACAA+TGG | + | chr5.1:7804803-7804822 | MS.gene20314:CDS | 60.0% | |
| GGCCCAGGTAAAGGAACAGC+TGG | + | chr5.1:7804895-7804914 | MS.gene20314:CDS | 60.0% | |
| GGCCCATTAGGGACCCAAGA+CGG | + | chr5.1:7804870-7804889 | MS.gene20314:CDS | 60.0% | |
| GTGGTGACCCGTGGTGAGAA+GGG | + | chr5.1:7804926-7804945 | MS.gene20314:CDS | 60.0% | |
| TGCCAGCTTGATCCGTGACG+TGG | - | chr5.1:7803639-7803658 | None:intergenic | 60.0% | |
| TGTGGTGACCCGTGGTGAGA+AGG | + | chr5.1:7804925-7804944 | MS.gene20314:CDS | 60.0% | |
| TTGGGAGCCCATGGTAGCCA+TGG | - | chr5.1:7804215-7804234 | None:intergenic | 60.0% | |
| ! | GTCCCTAATGGGCCCAGGTT+TGG | - | chr5.1:7804864-7804883 | None:intergenic | 60.0% |
| !! | CAAGGACAGGGGGTATTGGG+TGG | + | chr5.1:7805126-7805145 | MS.gene20314:CDS | 60.0% |
| !! | GAGAGTGTTGTGGTGACCCG+TGG | + | chr5.1:7804917-7804936 | MS.gene20314:CDS | 60.0% |
| GAGGGCTGTCGCGCTTGTCA+TGG | + | chr5.1:7805043-7805062 | MS.gene20314:CDS | 65.0% | |
| GGCGCACACACACCGAACGA+CGG | + | chr5.1:7804987-7805006 | MS.gene20314:CDS | 65.0% | |
| GGGGGAGCCATGGCTACCAT+GGG | + | chr5.1:7804205-7804224 | MS.gene20314:intron | 65.0% | |
| GTGGGTCCATGCCGTTGCTG+AGG | - | chr5.1:7804801-7804820 | None:intergenic | 65.0% | |
| ! | CTTGGGTCCCTAATGGGCCC+AGG | - | chr5.1:7804869-7804888 | None:intergenic | 65.0% |
| !! | TCGTTCGGTGTGTGTGCGCC+CGG | - | chr5.1:7804987-7805006 | None:intergenic | 65.0% |
| GGGGGGAGCCATGGCTACCA+TGG | + | chr5.1:7804204-7804223 | MS.gene20314:intron | 70.0% | |
| ! | GGACCCAAGACGGTTGGCCC+AGG | + | chr5.1:7804880-7804899 | MS.gene20314:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 7802400 | 7805974 | 7802400 | ID=MS.gene20314 |
| chr5.1 | mRNA | 7802400 | 7805974 | 7802400 | ID=MS.gene20314.t1;Parent=MS.gene20314 |
| chr5.1 | exon | 7802400 | 7802470 | 7802400 | ID=MS.gene20314.t1.exon1;Parent=MS.gene20314.t1 |
| chr5.1 | CDS | 7802400 | 7802470 | 7802400 | ID=cds.MS.gene20314.t1;Parent=MS.gene20314.t1 |
| chr5.1 | exon | 7802569 | 7802614 | 7802569 | ID=MS.gene20314.t1.exon2;Parent=MS.gene20314.t1 |
| chr5.1 | CDS | 7802569 | 7802614 | 7802569 | ID=cds.MS.gene20314.t1;Parent=MS.gene20314.t1 |
| chr5.1 | exon | 7803283 | 7803397 | 7803283 | ID=MS.gene20314.t1.exon3;Parent=MS.gene20314.t1 |
| chr5.1 | CDS | 7803283 | 7803397 | 7803283 | ID=cds.MS.gene20314.t1;Parent=MS.gene20314.t1 |
| chr5.1 | exon | 7803632 | 7803699 | 7803632 | ID=MS.gene20314.t1.exon4;Parent=MS.gene20314.t1 |
| chr5.1 | CDS | 7803632 | 7803699 | 7803632 | ID=cds.MS.gene20314.t1;Parent=MS.gene20314.t1 |
| chr5.1 | exon | 7804602 | 7805267 | 7804602 | ID=MS.gene20314.t1.exon5;Parent=MS.gene20314.t1 |
| chr5.1 | CDS | 7804602 | 7805267 | 7804602 | ID=cds.MS.gene20314.t1;Parent=MS.gene20314.t1 |
| chr5.1 | exon | 7805375 | 7805482 | 7805375 | ID=MS.gene20314.t1.exon6;Parent=MS.gene20314.t1 |
| chr5.1 | CDS | 7805375 | 7805482 | 7805375 | ID=cds.MS.gene20314.t1;Parent=MS.gene20314.t1 |
| chr5.1 | exon | 7805585 | 7805974 | 7805585 | ID=MS.gene20314.t1.exon7;Parent=MS.gene20314.t1 |
| chr5.1 | CDS | 7805585 | 7805974 | 7805585 | ID=cds.MS.gene20314.t1;Parent=MS.gene20314.t1 |
| Gene Sequence |
| Protein sequence |
