Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43525.t1 | XP_003611547.1 | 97.1 | 487 | 13 | 1 | 1 | 487 | 1 | 486 | 1.50E-260 | 908.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43525.t1 | Q9FHP1 | 47.2 | 498 | 222 | 9 | 1 | 482 | 2 | 474 | 9.5e-118 | 425.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43525.t1 | G7K2F4 | 97.1 | 487 | 13 | 1 | 1 | 487 | 1 | 486 | 1.1e-260 | 908.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052926 | MS.gene43525 | PPI |
| MS.gene02506 | MS.gene43525 | PPI |
| MS.gene93159 | MS.gene43525 | PPI |
| MS.gene33646 | MS.gene43525 | PPI |
| MS.gene026670 | MS.gene43525 | PPI |
| MS.gene013709 | MS.gene43525 | PPI |
| MS.gene43525 | MS.gene02630 | PPI |
| MS.gene31860 | MS.gene43525 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43525.t1 | MTR_5g015170 | 97.947 | 487 | 9 | 1 | 1 | 487 | 1 | 486 | 0.0 | 981 |
| MS.gene43525.t1 | MTR_4g097380 | 52.236 | 492 | 210 | 7 | 1 | 487 | 19 | 490 | 6.33e-177 | 506 |
| MS.gene43525.t1 | MTR_3g088885 | 46.380 | 442 | 212 | 12 | 1 | 438 | 1 | 421 | 1.19e-126 | 376 |
| MS.gene43525.t1 | MTR_7g022470 | 43.213 | 442 | 227 | 6 | 9 | 449 | 10 | 428 | 4.53e-122 | 364 |
| MS.gene43525.t1 | MTR_5g047260 | 45.598 | 443 | 211 | 8 | 9 | 450 | 17 | 430 | 4.26e-121 | 362 |
| MS.gene43525.t1 | MTR_1g029520 | 46.318 | 421 | 210 | 8 | 20 | 438 | 249 | 655 | 6.59e-120 | 367 |
| MS.gene43525.t1 | MTR_7g028050 | 42.958 | 426 | 212 | 7 | 9 | 429 | 1 | 400 | 1.18e-115 | 348 |
| MS.gene43525.t1 | MTR_5g011580 | 42.005 | 419 | 205 | 7 | 12 | 428 | 9 | 391 | 7.13e-106 | 323 |
| MS.gene43525.t1 | MTR_4g101950 | 41.587 | 416 | 207 | 6 | 12 | 426 | 9 | 389 | 1.09e-105 | 322 |
| MS.gene43525.t1 | MTR_5g047260 | 47.143 | 350 | 157 | 7 | 9 | 357 | 17 | 339 | 2.94e-96 | 295 |
| MS.gene43525.t1 | MTR_5g047260 | 46.708 | 319 | 143 | 6 | 9 | 326 | 17 | 309 | 1.04e-84 | 264 |
| MS.gene43525.t1 | MTR_7g028050 | 42.904 | 303 | 155 | 6 | 132 | 429 | 8 | 297 | 7.15e-78 | 247 |
| MS.gene43525.t1 | MTR_1g012740 | 43.137 | 102 | 51 | 2 | 293 | 394 | 54 | 148 | 1.60e-16 | 77.4 |
| MS.gene43525.t1 | MTR_1g012740 | 34.756 | 164 | 71 | 7 | 1 | 158 | 1 | 134 | 1.37e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43525.t1 | AT5G65890 | 47.984 | 496 | 221 | 9 | 1 | 482 | 2 | 474 | 3.40e-153 | 445 |
| MS.gene43525.t1 | AT5G65890 | 47.984 | 496 | 221 | 9 | 1 | 482 | 2 | 474 | 3.40e-153 | 445 |
| MS.gene43525.t1 | AT1G76990 | 45.946 | 444 | 215 | 5 | 1 | 440 | 1 | 423 | 1.29e-133 | 394 |
| MS.gene43525.t1 | AT1G76990 | 45.946 | 444 | 215 | 5 | 1 | 440 | 1 | 423 | 1.29e-133 | 394 |
| MS.gene43525.t1 | AT1G76990 | 45.946 | 444 | 215 | 5 | 1 | 440 | 1 | 423 | 1.29e-133 | 394 |
| MS.gene43525.t1 | AT1G76990 | 45.946 | 444 | 215 | 5 | 1 | 440 | 1 | 423 | 1.29e-133 | 394 |
| MS.gene43525.t1 | AT1G76990 | 45.946 | 444 | 215 | 5 | 1 | 440 | 1 | 423 | 1.29e-133 | 394 |
| MS.gene43525.t1 | AT5G65890 | 46.652 | 448 | 202 | 9 | 52 | 485 | 1 | 425 | 1.01e-127 | 378 |
| MS.gene43525.t1 | AT5G65890 | 46.652 | 448 | 202 | 9 | 52 | 485 | 1 | 425 | 1.01e-127 | 378 |
| MS.gene43525.t1 | AT5G25320 | 40.980 | 510 | 267 | 11 | 1 | 486 | 1 | 500 | 8.12e-125 | 373 |
| MS.gene43525.t1 | AT1G69040 | 43.333 | 450 | 229 | 8 | 5 | 452 | 7 | 432 | 2.69e-122 | 365 |
| MS.gene43525.t1 | AT1G69040 | 43.333 | 450 | 229 | 8 | 5 | 452 | 3 | 428 | 3.04e-122 | 365 |
| MS.gene43525.t1 | AT2G03730 | 44.965 | 427 | 217 | 6 | 5 | 429 | 7 | 417 | 5.04e-119 | 357 |
| MS.gene43525.t1 | AT2G03730 | 44.965 | 427 | 217 | 6 | 5 | 429 | 7 | 417 | 5.04e-119 | 357 |
| MS.gene43525.t1 | AT5G25320 | 40.764 | 471 | 247 | 10 | 38 | 486 | 1 | 461 | 2.85e-115 | 347 |
| MS.gene43525.t1 | AT3G01990 | 45.107 | 419 | 204 | 7 | 10 | 428 | 17 | 409 | 1.86e-113 | 342 |
| MS.gene43525.t1 | AT3G01990 | 45.107 | 419 | 204 | 7 | 10 | 428 | 17 | 409 | 1.86e-113 | 342 |
| MS.gene43525.t1 | AT3G01990 | 44.630 | 419 | 206 | 6 | 10 | 428 | 3 | 395 | 2.53e-113 | 342 |
| MS.gene43525.t1 | AT3G01990 | 44.630 | 419 | 206 | 6 | 10 | 428 | 3 | 395 | 2.53e-113 | 342 |
| MS.gene43525.t1 | AT3G01990 | 44.286 | 420 | 206 | 6 | 10 | 428 | 3 | 395 | 2.76e-113 | 341 |
| MS.gene43525.t1 | AT3G01990 | 44.286 | 420 | 206 | 6 | 10 | 428 | 17 | 409 | 3.03e-113 | 342 |
| MS.gene43525.t1 | AT4G22780 | 44.231 | 416 | 196 | 6 | 12 | 426 | 9 | 389 | 1.95e-108 | 330 |
| MS.gene43525.t1 | AT4G22780 | 44.231 | 416 | 196 | 6 | 12 | 426 | 9 | 389 | 1.95e-108 | 330 |
| MS.gene43525.t1 | AT1G12420 | 41.928 | 415 | 209 | 5 | 12 | 426 | 9 | 391 | 1.22e-103 | 317 |
| MS.gene43525.t1 | AT5G65890 | 45.753 | 365 | 171 | 7 | 133 | 485 | 14 | 363 | 2.25e-99 | 303 |
| MS.gene43525.t1 | AT5G25320 | 43.799 | 379 | 182 | 9 | 1 | 356 | 1 | 371 | 1.01e-97 | 300 |
| MS.gene43525.t1 | AT3G01990 | 44.540 | 348 | 167 | 6 | 10 | 357 | 17 | 338 | 4.14e-92 | 284 |
| MS.gene43525.t1 | AT3G01990 | 44.290 | 359 | 168 | 7 | 10 | 362 | 17 | 349 | 4.79e-92 | 284 |
| MS.gene43525.t1 | AT3G01990 | 44.290 | 359 | 168 | 7 | 10 | 362 | 3 | 335 | 7.13e-92 | 283 |
| MS.gene43525.t1 | AT3G01990 | 44.268 | 314 | 148 | 6 | 10 | 322 | 17 | 304 | 8.03e-79 | 249 |
| MS.gene43525.t1 | AT3G01990 | 43.770 | 313 | 151 | 5 | 10 | 322 | 3 | 290 | 1.14e-78 | 248 |
| MS.gene43525.t1 | AT1G12420 | 39.031 | 351 | 182 | 5 | 76 | 426 | 1 | 319 | 8.37e-77 | 245 |
Find 133 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACAATTCCACTATATT+TGG | 0.129234 | 5.3:-8238503 | None:intergenic |
| ATGTTATGGTGCAGGGTTTA+AGG | 0.149741 | 5.3:+8238321 | MS.gene43525:intron |
| CTCAGATGGTGGATGGTTTA+TGG | 0.175362 | 5.3:+8236468 | MS.gene43525:CDS |
| CAACCGTCTTGGGTCCCTAA+TGG | 0.292246 | 5.3:-8237623 | None:intergenic |
| GTTGATAGTGCAAACAAGTA+TGG | 0.292710 | 5.3:+8236379 | MS.gene43525:CDS |
| CATCCAAACCTGGGCCCATT+AGG | 0.303226 | 5.3:+8237608 | MS.gene43525:CDS |
| CTGATCGGCTATGGATTTCT+TGG | 0.307288 | 5.3:-8237995 | None:intergenic |
| ACTCGTGTGATTCGTGAAAA+TGG | 0.308494 | 5.3:+8238389 | MS.gene43525:CDS |
| CAGTAGCGGCGATCACAAAA+AGG | 0.321891 | 5.3:+8237819 | MS.gene43525:CDS |
| GTCCCTAATGGGCCCAGGTT+TGG | 0.329663 | 5.3:-8237611 | None:intergenic |
| TATGGATTTCTTGGAACTAA+TGG | 0.329739 | 5.3:-8237986 | None:intergenic |
| TCTCCAGCTGTTCCTTTACC+TGG | 0.332514 | 5.3:-8237648 | None:intergenic |
| GAGAGAATCTCAGGATTTAA+TGG | 0.334024 | 5.3:-8238711 | None:intergenic |
| CCCTGTCGGCATACATTAAC+TGG | 0.338582 | 5.3:-8237765 | None:intergenic |
| AACCGTCTTGGGTCCCTAAT+GGG | 0.339779 | 5.3:-8237622 | None:intergenic |
| TTTACCTGGGCCAACCGTCT+TGG | 0.354606 | 5.3:-8237634 | None:intergenic |
| CGATACAGTGTGTGTACTTA+GGG | 0.366686 | 5.3:+8237936 | MS.gene43525:CDS |
| AGAGAATCTCAGGATTTAAT+GGG | 0.377098 | 5.3:-8238710 | None:intergenic |
| TTACCTGGGCCAACCGTCTT+GGG | 0.381992 | 5.3:-8237633 | None:intergenic |
| ATTTGCACTGAAAATAAAAC+AGG | 0.402096 | 5.3:+8238350 | MS.gene43525:CDS |
| GATACGCCAAGACTTTCTAT+TGG | 0.402236 | 5.3:+8238641 | MS.gene43525:CDS |
| TCTTGCAGGAGTACTATATA+AGG | 0.406529 | 5.3:+8238117 | MS.gene43525:intron |
| GGGGTATTGGGTGGTGAACT+TGG | 0.414673 | 5.3:+8237885 | MS.gene43525:CDS |
| CAAGAAATCCATAGCCGATC+AGG | 0.418699 | 5.3:+8237996 | MS.gene43525:CDS |
| TGTTATGGTGCAGGGTTTAA+GGG | 0.420837 | 5.3:+8238322 | MS.gene43525:intron |
| TCGATACAGTGTGTGTACTT+AGG | 0.426194 | 5.3:+8237935 | MS.gene43525:CDS |
| GCAGGCTACCCTTCCATTGT+GGG | 0.435839 | 5.3:-8237566 | None:intergenic |
| ATCCAAACCTGGGCCCATTA+GGG | 0.444278 | 5.3:+8237609 | MS.gene43525:CDS |
| GGTGGTGAACTTGGTGTGTA+GGG | 0.445141 | 5.3:+8237894 | MS.gene43525:CDS |
| TCGTTCGGTGTGTGTGCGCC+CGG | 0.457740 | 5.3:-8237734 | None:intergenic |
| TCAATACCAAGGGTTGAGAT+TGG | 0.463256 | 5.3:+8238416 | MS.gene43525:CDS |
| GTATGCCGACAGGGACTATG+AGG | 0.470907 | 5.3:+8237774 | MS.gene43525:CDS |
| GTGAATATTCTGCGCAGCCT+TGG | 0.471293 | 5.3:-8237402 | None:intergenic |
| GGGTGGTGAACTTGGTGTGT+AGG | 0.481307 | 5.3:+8237893 | MS.gene43525:CDS |
| CCTTCTCAATTTGGTGCATG+AGG | 0.482265 | 5.3:-8236774 | None:intergenic |
| CCTTTCTCCCTTCTCACCAC+GGG | 0.483438 | 5.3:-8237683 | None:intergenic |
| GTAGAAGAGGCATCCAAACC+TGG | 0.484993 | 5.3:+8237598 | MS.gene43525:CDS |
| AGAAGTGAAACCAAATATAG+TGG | 0.487558 | 5.3:+8238493 | MS.gene43525:CDS |
| CTCAGGATTTAATGGGGCTA+AGG | 0.487811 | 5.3:-8238703 | None:intergenic |
| ATGAAGTACCTGATCGGCTA+TGG | 0.488476 | 5.3:-8238004 | None:intergenic |
| CGCATTCCAATCTCAACCCT+TGG | 0.489030 | 5.3:-8238422 | None:intergenic |
| CTTGGGTCCCTAATGGGCCC+AGG | 0.491215 | 5.3:-8237616 | None:intergenic |
| ATGTGCCACAAGAGCAAAAG+AGG | 0.493335 | 5.3:+8237357 | MS.gene43525:CDS |
| CTCCAGCTGTTCCTTTACCT+GGG | 0.494258 | 5.3:-8237647 | None:intergenic |
| CTGCTGATATTTCTGATAGT+AGG | 0.497761 | 5.3:-8237498 | None:intergenic |
| CCCGTGGTGAGAAGGGAGAA+AGG | 0.498977 | 5.3:+8237683 | MS.gene43525:CDS |
| AAGACGGTTGGCCCAGGTAA+AGG | 0.499864 | 5.3:+8237636 | MS.gene43525:CDS |
| TAACTGGTGAAGCCGTCGTT+CGG | 0.499936 | 5.3:-8237749 | None:intergenic |
| GATATTTCTGATAGTAGGCC+TGG | 0.500326 | 5.3:-8237493 | None:intergenic |
| TCCTTTCTCCCTTCTCACCA+CGG | 0.500399 | 5.3:-8237684 | None:intergenic |
| GGTTTCACTTCTTGACCTGA+AGG | 0.505004 | 5.3:-8238482 | None:intergenic |
| AAAACAAAGTGTTACCTGGC+TGG | 0.507971 | 5.3:-8235563 | None:intergenic |
| GGCCCAGGTAAAGGAACAGC+TGG | 0.508319 | 5.3:+8237645 | MS.gene43525:CDS |
| AAGTCATACATTTCCTCAGA+TGG | 0.511270 | 5.3:+8236454 | MS.gene43525:CDS |
| CTCAAAACAAATTGTGTCAA+AGG | 0.511876 | 5.3:+8237435 | MS.gene43525:CDS |
| AGGTTGAGAAACTTTGCTAC+CGG | 0.516920 | 5.3:+8237715 | MS.gene43525:CDS |
| ACTATTAGTCGACGAGGAAG+AGG | 0.517282 | 5.3:-8238600 | None:intergenic |
| ATCTGAGGAAATGTATGACT+TGG | 0.517740 | 5.3:-8236452 | None:intergenic |
| ATCAGAAATATCAGCAGTGT+TGG | 0.520345 | 5.3:+8237504 | MS.gene43525:CDS |
| CTCTTCTACGTAAAGAATGC+AGG | 0.520671 | 5.3:-8237584 | None:intergenic |
| TTGCTTCCAATAGAAAGTCT+TGG | 0.523994 | 5.3:-8238647 | None:intergenic |
| CGGCATGGACCCACAATGGA+AGG | 0.526482 | 5.3:+8237557 | MS.gene43525:CDS |
| ACCAGTTAATGTATGCCGAC+AGG | 0.528524 | 5.3:+8237764 | MS.gene43525:CDS |
| ACATTTCCTCAGATGGTGGA+TGG | 0.530471 | 5.3:+8236461 | MS.gene43525:CDS |
| TTTCTATTGGAAGCAAGCTA+TGG | 0.532707 | 5.3:+8238654 | MS.gene43525:CDS |
| TGCAGGCTACCCTTCCATTG+TGG | 0.532960 | 5.3:-8237567 | None:intergenic |
| CTATTAGTAGATGCAAGGAC+AGG | 0.535659 | 5.3:+8237863 | MS.gene43525:CDS |
| TTGATAGTGCAAACAAGTAT+GGG | 0.540593 | 5.3:+8236380 | MS.gene43525:CDS |
| AAGCAAGCTATGGTCTCAGA+TGG | 0.546416 | 5.3:+8238664 | MS.gene43525:CDS |
| CTGCATTCTTTACGTAGAAG+AGG | 0.548254 | 5.3:+8237585 | MS.gene43525:CDS |
| TATTAGTAGATGCAAGGACA+GGG | 0.549071 | 5.3:+8237864 | MS.gene43525:CDS |
| TGCCAGCTTGATCCGTGACG+TGG | 0.553021 | 5.3:-8236732 | None:intergenic |
| GGACCCAAGACGGTTGGCCC+AGG | 0.553645 | 5.3:+8237630 | MS.gene43525:CDS |
| TGTGGTGACCCGTGGTGAGA+AGG | 0.555690 | 5.3:+8237675 | MS.gene43525:CDS |
| CTGGCAAGAAACTCACTGAC+AGG | 0.555755 | 5.3:+8236749 | MS.gene43525:CDS |
| GGTTGAGAAACTTTGCTACC+GGG | 0.558145 | 5.3:+8237716 | MS.gene43525:CDS |
| CCAGTTAATGTATGCCGACA+GGG | 0.559631 | 5.3:+8237765 | MS.gene43525:CDS |
| GTCAAAGGAGAACACAGCAT+TGG | 0.563927 | 5.3:+8237450 | MS.gene43525:CDS |
| CTGAAAGATTACATCCAGCC+AGG | 0.565709 | 5.3:+8235549 | MS.gene43525:CDS |
| ACACAGCATTGGAGATGAGT+GGG | 0.569581 | 5.3:+8237461 | MS.gene43525:CDS |
| GAGGGCTGTCGCGCTTGTCA+CGG | 0.569923 | 5.3:+8237793 | MS.gene43525:CDS |
| GATATTATTAGAGATGGTAC+AGG | 0.574494 | 5.3:+8236402 | MS.gene43525:CDS |
| GTGATCAGTAACTACGTCTA+CGG | 0.577850 | 5.3:-8238543 | None:intergenic |
| CTCTCAGAACCCAAAGTGAG+AGG | 0.582014 | 5.3:+8238159 | MS.gene43525:CDS |
| GGATTTCTTGGAACTAATGG+CGG | 0.585123 | 5.3:-8237983 | None:intergenic |
| TCTCAGAACCCAAAGTGAGA+GGG | 0.585577 | 5.3:+8238160 | MS.gene43525:CDS |
| CATAAACCATCCACCATCTG+AGG | 0.586219 | 5.3:-8236467 | None:intergenic |
| CATTAGGGACCCAAGACGGT+TGG | 0.588293 | 5.3:+8237624 | MS.gene43525:CDS |
| GGCGCACACACACCGAACGA+CGG | 0.589313 | 5.3:+8237737 | MS.gene43525:CDS |
| TATATAAGGCACAAGTGGAA+TGG | 0.589958 | 5.3:+8238131 | MS.gene43525:CDS |
| AGGGAGAAAGGAACAATGTG+AGG | 0.594047 | 5.3:+8237695 | MS.gene43525:CDS |
| ATGTCACCTCAGCAACGGCA+TGG | 0.596380 | 5.3:+8237542 | MS.gene43525:CDS |
| CCTCATGCACCAAATTGAGA+AGG | 0.597211 | 5.3:+8236774 | MS.gene43525:CDS |
| CTGCAATGTCACCTCAGCAA+CGG | 0.599321 | 5.3:+8237537 | MS.gene43525:CDS |
| GTGGTGACCCGTGGTGAGAA+GGG | 0.599795 | 5.3:+8237676 | MS.gene43525:CDS |
| TTCCACGTCACGGATCAAGC+TGG | 0.601458 | 5.3:+8236730 | MS.gene43525:CDS |
| GTATGGGATATTATTAGAGA+TGG | 0.607389 | 5.3:+8236396 | MS.gene43525:CDS |
| AGTACTATATAAGGCACAAG+TGG | 0.608265 | 5.3:+8238126 | MS.gene43525:CDS |
| AAATGGACTATCAATACCAA+GGG | 0.608641 | 5.3:+8238406 | MS.gene43525:CDS |
| GATGATGAAGCAGAACTCCA+AGG | 0.609526 | 5.3:+8237385 | MS.gene43525:CDS |
| TAAAGACTGTACTGTTGTGA+AGG | 0.613082 | 5.3:+8235689 | MS.gene43525:CDS |
| TGTGTCTATTAGTAGATGCA+AGG | 0.614395 | 5.3:+8237858 | MS.gene43525:CDS |
| GCAACGGCATGGACCCACAA+TGG | 0.615665 | 5.3:+8237553 | MS.gene43525:CDS |
| AAAATGGACTATCAATACCA+AGG | 0.618601 | 5.3:+8238405 | MS.gene43525:CDS |
| TCATACATTTCCTCAGATGG+TGG | 0.619116 | 5.3:+8236457 | MS.gene43525:CDS |
| AACACAGCATTGGAGATGAG+TGG | 0.622791 | 5.3:+8237460 | MS.gene43525:CDS |
| CAATGCAGTGTTCCACGTCA+CGG | 0.623443 | 5.3:+8236720 | MS.gene43525:intron |
| AGCAAGCTATGGTCTCAGAT+GGG | 0.626128 | 5.3:+8238665 | MS.gene43525:CDS |
| TAGAAGAGGCATCCAAACCT+GGG | 0.631343 | 5.3:+8237599 | MS.gene43525:CDS |
| AGCATTGGAGATGAGTGGGA+TGG | 0.641022 | 5.3:+8237465 | MS.gene43525:CDS |
| AGGGTTGAGATTGGAATGCG+AGG | 0.641150 | 5.3:+8238425 | MS.gene43525:CDS |
| GGCCCATTAGGGACCCAAGA+CGG | 0.641597 | 5.3:+8237620 | MS.gene43525:CDS |
| GATGGTGGATGGTTTATGGA+CGG | 0.644975 | 5.3:+8236472 | MS.gene43525:CDS |
| TTAGTAGATGCAAGGACAGG+GGG | 0.646835 | 5.3:+8237866 | MS.gene43525:CDS |
| GGCATGGACCCACAATGGAA+GGG | 0.647070 | 5.3:+8237558 | MS.gene43525:CDS |
| ATGAGTGGGATGGATAGACC+AGG | 0.647189 | 5.3:+8237475 | MS.gene43525:CDS |
| GAGAGTGTTGTGGTGACCCG+TGG | 0.647944 | 5.3:+8237667 | MS.gene43525:CDS |
| GTGGGTCCATGCCGTTGCTG+AGG | 0.652331 | 5.3:-8237548 | None:intergenic |
| GTGACGATGAAGTACCTGAT+CGG | 0.654044 | 5.3:-8238010 | None:intergenic |
| ACAGCCCTCATAGTCCCTGT+CGG | 0.660415 | 5.3:-8237779 | None:intergenic |
| TGGAATGCGAGGAGATGATG+TGG | 0.665858 | 5.3:+8238436 | MS.gene43525:CDS |
| AGACGTAGTTACTGATCACA+AGG | 0.670064 | 5.3:+8238547 | MS.gene43525:CDS |
| TATGCCGACAGGGACTATGA+GGG | 0.670406 | 5.3:+8237775 | MS.gene43525:CDS |
| GCTTGTCACGGAGACAGTAG+CGG | 0.683905 | 5.3:+8237805 | MS.gene43525:CDS |
| ATTAGTAGATGCAAGGACAG+GGG | 0.684726 | 5.3:+8237865 | MS.gene43525:CDS |
| ATGCGAGGAGATGATGTGGT+AGG | 0.689656 | 5.3:+8238440 | MS.gene43525:CDS |
| GGAACAGCTGGAGAGTGTTG+TGG | 0.690059 | 5.3:+8237657 | MS.gene43525:CDS |
| TAGTGAAAATAGTAGTACAG+AGG | 0.690844 | 5.3:+8238619 | MS.gene43525:CDS |
| GATGTTCGAGAAAGCTTACG+AGG | 0.693129 | 5.3:-8238572 | None:intergenic |
| TGTATGACTTGGAAATGATG+AGG | 0.695973 | 5.3:-8236441 | None:intergenic |
| GAGAATCTCAGGATTTAATG+GGG | 0.703397 | 5.3:-8238709 | None:intergenic |
| TTGTTGAGACAAGAGTGTGG+TGG | 0.733636 | 5.3:+8238518 | MS.gene43525:CDS |
| GAATTGTTGAGACAAGAGTG+TGG | 0.752168 | 5.3:+8238515 | MS.gene43525:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAAAATATAACAAAAA+AGG | + | chr5.3:8235879-8235898 | MS.gene43525:intron | 10.0% |
| !! | TTGTATATAGAAATTTAATT+TGG | + | chr5.3:8235797-8235816 | MS.gene43525:intron | 10.0% |
| !! | AAAAAAAAAAATTGCTAAAG+AGG | + | chr5.3:8236244-8236263 | MS.gene43525:intron | 15.0% |
| !! | AATAATAAGGATACATAAAA+AGG | - | chr5.3:8238268-8238287 | None:intergenic | 15.0% |
| !! | ATTAGTATTAAAACTAAAGT+CGG | + | chr5.3:8235852-8235871 | MS.gene43525:intron | 15.0% |
| !! | TAAATTTCTATATACAAAAG+AGG | - | chr5.3:8235794-8235813 | None:intergenic | 15.0% |
| !! | TACATGATTAATTAACTAAT+CGG | - | chr5.3:8235602-8235621 | None:intergenic | 15.0% |
| !!! | GTAGAAAATATTTTATTGAT+AGG | - | chr5.3:8236814-8236833 | None:intergenic | 15.0% |
| !!! | TTTAGTTTTAATACTAATAC+AGG | - | chr5.3:8235850-8235869 | None:intergenic | 15.0% |
| !! | AAAATTAAGTCAAAATGCTA+TGG | - | chr5.3:8236294-8236313 | None:intergenic | 20.0% |
| !! | ATTATCATTATCATGGTTTA+TGG | - | chr5.3:8236554-8236573 | None:intergenic | 20.0% |
| !! | TTCTTATAAAAAAACGTGTT+TGG | - | chr5.3:8236172-8236191 | None:intergenic | 20.0% |
| !! | TTGATCAATTATCATTATCA+TGG | - | chr5.3:8236561-8236580 | None:intergenic | 20.0% |
| !!! | ATATAGAAATTTAATTTGGC+TGG | + | chr5.3:8235801-8235820 | MS.gene43525:intron | 20.0% |
| !!! | GTAATTAATTTTCTGCTAAT+TGG | + | chr5.3:8235639-8235658 | MS.gene43525:intron | 20.0% |
| !!! | GTACAAGATATTTTATTGAT+GGG | - | chr5.3:8237096-8237115 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAGAAAATTAT+CGG | + | chr5.3:8237208-8237227 | MS.gene43525:intron | 20.0% |
| !!! | TTATTTTCTCAAATTGCTAT+TGG | - | chr5.3:8235977-8235996 | None:intergenic | 20.0% |
| ! | AAAAAAATTGCTAAAGAGGT+TGG | + | chr5.3:8236248-8236267 | MS.gene43525:intron | 25.0% |
| ! | AAAAGGAAAATCTTAATGCT+AGG | - | chr5.3:8238251-8238270 | None:intergenic | 25.0% |
| ! | ACAAAAAAACCTTCTCAATT+TGG | - | chr5.3:8236786-8236805 | None:intergenic | 25.0% |
| ! | ATACAGGAAAACAATGTTAA+AGG | - | chr5.3:8236527-8236546 | None:intergenic | 25.0% |
| ! | ATTTGCACTGAAAATAAAAC+AGG | + | chr5.3:8238350-8238369 | MS.gene43525:CDS | 25.0% |
| ! | CTAACAAGATCTTAAACATA+AGG | - | chr5.3:8236009-8236028 | None:intergenic | 25.0% |
| ! | GATATCAGCAAAAAAATTAG+TGG | + | chr5.3:8236653-8236672 | MS.gene43525:intron | 25.0% |
| ! | TGCATTATGGCATAATAATA+AGG | - | chr5.3:8238281-8238300 | None:intergenic | 25.0% |
| ! | TGGATCAATGTAATTAATGA+CGG | - | chr5.3:8238095-8238114 | None:intergenic | 25.0% |
| !! | CTTATGTTTAAGATCTTGTT+AGG | + | chr5.3:8236007-8236026 | MS.gene43525:intron | 25.0% |
| !! | GGTACAAGATATTTTATTGA+TGG | - | chr5.3:8237097-8237116 | None:intergenic | 25.0% |
| !!! | ATCTTAATGCTAGGTTTTAT+AGG | - | chr5.3:8238242-8238261 | None:intergenic | 25.0% |
| !!! | GTGGTTTTTTATGTATGTTA+TGG | + | chr5.3:8238307-8238326 | MS.gene43525:intron | 25.0% |
| !!! | TCGTTTTTTATGTGTCATTT+CGG | + | chr5.3:8236945-8236964 | MS.gene43525:intron | 25.0% |
| ACAGATGTGTTTATGTTCAT+AGG | + | chr5.3:8237044-8237063 | MS.gene43525:intron | 30.0% | |
| ACTGTATCGAAAAACAACTT+GGG | - | chr5.3:8237925-8237944 | None:intergenic | 30.0% | |
| AGAAGTGAAACCAAATATAG+TGG | + | chr5.3:8238493-8238512 | MS.gene43525:CDS | 30.0% | |
| CACATATTCAATCAGAAGTA+TGG | - | chr5.3:8236836-8236855 | None:intergenic | 30.0% | |
| CACTACAAAACAAGACATAA+AGG | - | chr5.3:8235744-8235763 | None:intergenic | 30.0% | |
| CAGCAAAAAAATTAGTGGTT+CGG | + | chr5.3:8236658-8236677 | MS.gene43525:intron | 30.0% | |
| CATGGTTTATGGAAAAATAC+AGG | - | chr5.3:8236543-8236562 | None:intergenic | 30.0% | |
| CTATGGTTACTAGTAACTTA+TGG | - | chr5.3:8236277-8236296 | None:intergenic | 30.0% | |
| CTCAAAACAAATTGTGTCAA+AGG | + | chr5.3:8237435-8237454 | MS.gene43525:CDS | 30.0% | |
| CTCAACAATTCCACTATATT+TGG | - | chr5.3:8238506-8238525 | None:intergenic | 30.0% | |
| CTTAATAGAGTTACTTGTGT+TGG | + | chr5.3:8236113-8236132 | MS.gene43525:intron | 30.0% | |
| GATATTATTAGAGATGGTAC+AGG | + | chr5.3:8236402-8236421 | MS.gene43525:CDS | 30.0% | |
| GTATGGGATATTATTAGAGA+TGG | + | chr5.3:8236396-8236415 | MS.gene43525:CDS | 30.0% | |
| TACGTATTCAATCAGAAGTA+TGG | - | chr5.3:8237118-8237137 | None:intergenic | 30.0% | |
| TAGTGAAAATAGTAGTACAG+AGG | + | chr5.3:8238619-8238638 | MS.gene43525:CDS | 30.0% | |
| TATGGATTTCTTGGAACTAA+TGG | - | chr5.3:8237989-8238008 | None:intergenic | 30.0% | |
| TTTATGTATGTTATGGTGCA+GGG | + | chr5.3:8238314-8238333 | MS.gene43525:intron | 30.0% | |
| ! | ACATAAAACAAAGTGTTACC+TGG | - | chr5.3:8235570-8235589 | None:intergenic | 30.0% |
| ! | GCTGATATCATATGATAATG+TGG | - | chr5.3:8236642-8236661 | None:intergenic | 30.0% |
| ! | TAATTTTCTGCTAATTGGCA+GGG | + | chr5.3:8235644-8235663 | MS.gene43525:intron | 30.0% |
| ! | TTAATTTTCTGCTAATTGGC+AGG | + | chr5.3:8235643-8235662 | MS.gene43525:intron | 30.0% |
| ! | TTTTATGTATGTTATGGTGC+AGG | + | chr5.3:8238313-8238332 | MS.gene43525:intron | 30.0% |
| ! | TTTTATGTCAGAAATCCTTC+AGG | + | chr5.3:8238467-8238486 | MS.gene43525:CDS | 30.0% |
| !! | AAAATGGACTATCAATACCA+AGG | + | chr5.3:8238405-8238424 | MS.gene43525:CDS | 30.0% |
| !! | AAATGGACTATCAATACCAA+GGG | + | chr5.3:8238406-8238425 | MS.gene43525:CDS | 30.0% |
| !! | TTGATAGTGCAAACAAGTAT+GGG | + | chr5.3:8236380-8236399 | MS.gene43525:CDS | 30.0% |
| !!! | TCGGTTTTAATGTGTCATTT+TGG | + | chr5.3:8237227-8237246 | MS.gene43525:intron | 30.0% |
| AAGTCATACATTTCCTCAGA+TGG | + | chr5.3:8236454-8236473 | MS.gene43525:CDS | 35.0% | |
| ACACCAGTTTAGAAATTGGA+AGG | + | chr5.3:8235904-8235923 | MS.gene43525:intron | 35.0% | |
| AGATGTGTGTTTATGTTCAC+AGG | + | chr5.3:8237330-8237349 | MS.gene43525:intron | 35.0% | |
| AGTACTATATAAGGCACAAG+TGG | + | chr5.3:8238126-8238145 | MS.gene43525:CDS | 35.0% | |
| AGTGTTTATCCTTCTTAGAG+TGG | + | chr5.3:8236497-8236516 | MS.gene43525:intron | 35.0% | |
| ATCAGAAATATCAGCAGTGT+TGG | + | chr5.3:8237504-8237523 | MS.gene43525:CDS | 35.0% | |
| ATCTGAGGAAATGTATGACT+TGG | - | chr5.3:8236455-8236474 | None:intergenic | 35.0% | |
| ATTATGCCATAATGCACTGA+TGG | + | chr5.3:8238285-8238304 | MS.gene43525:intron | 35.0% | |
| CACTATCAACCTGTAAATGT+CGG | - | chr5.3:8236369-8236388 | None:intergenic | 35.0% | |
| CACTGTATCGAAAAACAACT+TGG | - | chr5.3:8237926-8237945 | None:intergenic | 35.0% | |
| GTCATATCTAATGTATGCGT+CGG | - | chr5.3:8235947-8235966 | None:intergenic | 35.0% | |
| TAAAGACTGTACTGTTGTGA+AGG | + | chr5.3:8235689-8235708 | MS.gene43525:CDS | 35.0% | |
| TATATAAGGCACAAGTGGAA+TGG | + | chr5.3:8238131-8238150 | MS.gene43525:CDS | 35.0% | |
| TATCGAAAAACAACTTGGGA+CGG | - | chr5.3:8237921-8237940 | None:intergenic | 35.0% | |
| TATTAGTAGATGCAAGGACA+GGG | + | chr5.3:8237864-8237883 | MS.gene43525:CDS | 35.0% | |
| TGTGTCTATTAGTAGATGCA+AGG | + | chr5.3:8237858-8237877 | MS.gene43525:CDS | 35.0% | |
| TTGCTTCCAATAGAAAGTCT+TGG | - | chr5.3:8238650-8238669 | None:intergenic | 35.0% | |
| TTTCTATTGGAAGCAAGCTA+TGG | + | chr5.3:8238654-8238673 | MS.gene43525:CDS | 35.0% | |
| ! | AAAGGAATTCCACTCTAAGA+AGG | - | chr5.3:8236509-8236528 | None:intergenic | 35.0% |
| ! | ATTTTCACTATTAGTCGACG+AGG | - | chr5.3:8238609-8238628 | None:intergenic | 35.0% |
| ! | CTGCTGATATTTCTGATAGT+AGG | - | chr5.3:8237501-8237520 | None:intergenic | 35.0% |
| ! | TGTATGACTTGGAAATGATG+AGG | - | chr5.3:8236444-8236463 | None:intergenic | 35.0% |
| ! | TGTGTTGGTATTGTGTTAAG+AGG | + | chr5.3:8236128-8236147 | MS.gene43525:intron | 35.0% |
| !! | ATTGTGTTAAGAGGTATCAG+AGG | + | chr5.3:8236137-8236156 | MS.gene43525:intron | 35.0% |
| !! | GTTGATAGTGCAAACAAGTA+TGG | + | chr5.3:8236379-8236398 | MS.gene43525:CDS | 35.0% |
| !! | TCTTGCAGGAGTACTATATA+AGG | + | chr5.3:8238117-8238136 | MS.gene43525:intron | 35.0% |
| AAACCACCATCAGTGCATTA+TGG | - | chr5.3:8238294-8238313 | None:intergenic | 40.0% | |
| ACTCGTGTGATTCGTGAAAA+TGG | + | chr5.3:8238389-8238408 | MS.gene43525:CDS | 40.0% | |
| AGACGTAGTTACTGATCACA+AGG | + | chr5.3:8238547-8238566 | MS.gene43525:CDS | 40.0% | |
| AGGTTGAGAAACTTTGCTAC+CGG | + | chr5.3:8237715-8237734 | MS.gene43525:CDS | 40.0% | |
| ATAGAGAAACACACCGAACA+CGG | - | chr5.3:8237261-8237280 | None:intergenic | 40.0% | |
| ATGTTATGGTGCAGGGTTTA+AGG | + | chr5.3:8238321-8238340 | MS.gene43525:intron | 40.0% | |
| ATTAGTAGATGCAAGGACAG+GGG | + | chr5.3:8237865-8237884 | MS.gene43525:CDS | 40.0% | |
| CAGAGGCTACAAAATCACAA+TGG | - | chr5.3:8236036-8236055 | None:intergenic | 40.0% | |
| CGATACAGTGTGTGTACTTA+GGG | + | chr5.3:8237936-8237955 | MS.gene43525:CDS | 40.0% | |
| CTATTAGTAGATGCAAGGAC+AGG | + | chr5.3:8237863-8237882 | MS.gene43525:CDS | 40.0% | |
| CTCTTCTACGTAAAGAATGC+AGG | - | chr5.3:8237587-8237606 | None:intergenic | 40.0% | |
| CTGCATTCTTTACGTAGAAG+AGG | + | chr5.3:8237585-8237604 | MS.gene43525:CDS | 40.0% | |
| GAATTGTTGAGACAAGAGTG+TGG | + | chr5.3:8238515-8238534 | MS.gene43525:CDS | 40.0% | |
| GATACGCCAAGACTTTCTAT+TGG | + | chr5.3:8238641-8238660 | MS.gene43525:CDS | 40.0% | |
| GATGGGAAGAGACAAAAAAG+TGG | - | chr5.3:8237079-8237098 | None:intergenic | 40.0% | |
| GATTTGTCGTGATTTCACAG+AGG | - | chr5.3:8236053-8236072 | None:intergenic | 40.0% | |
| GGACACACCAGTTTAGAAAT+TGG | + | chr5.3:8235900-8235919 | MS.gene43525:intron | 40.0% | |
| GGATTTCTTGGAACTAATGG+CGG | - | chr5.3:8237986-8238005 | None:intergenic | 40.0% | |
| GTGATCAGTAACTACGTCTA+CGG | - | chr5.3:8238546-8238565 | None:intergenic | 40.0% | |
| GTGCCTTCCAATTTCTAAAC+TGG | - | chr5.3:8235910-8235929 | None:intergenic | 40.0% | |
| TACATTGATCCATGTCTTGC+AGG | + | chr5.3:8238103-8238122 | MS.gene43525:intron | 40.0% | |
| TATAGTACTCCTGCAAGACA+TGG | - | chr5.3:8238115-8238134 | None:intergenic | 40.0% | |
| TCAATACCAAGGGTTGAGAT+TGG | + | chr5.3:8238416-8238435 | MS.gene43525:CDS | 40.0% | |
| TCATACATTTCCTCAGATGG+TGG | + | chr5.3:8236457-8236476 | MS.gene43525:CDS | 40.0% | |
| TCGATACAGTGTGTGTACTT+AGG | + | chr5.3:8237935-8237954 | MS.gene43525:CDS | 40.0% | |
| TGAATGTTGCCGACATTTAC+AGG | + | chr5.3:8236357-8236376 | MS.gene43525:intron | 40.0% | |
| TGTATGACAGTGACACACTT+TGG | - | chr5.3:8237149-8237168 | None:intergenic | 40.0% | |
| TGTTATGGTGCAGGGTTTAA+GGG | + | chr5.3:8238322-8238341 | MS.gene43525:intron | 40.0% | |
| ! | AAAACAAAGTGTTACCTGGC+TGG | - | chr5.3:8235566-8235585 | None:intergenic | 40.0% |
| ! | AAGCTTTTCCCTCTCACTTT+GGG | - | chr5.3:8238171-8238190 | None:intergenic | 40.0% |
| ! | ATCACAAAAAGGGGTGTGAT+GGG | + | chr5.3:8237830-8237849 | MS.gene43525:CDS | 40.0% |
| ! | GATATTTCTGATAGTAGGCC+TGG | - | chr5.3:8237496-8237515 | None:intergenic | 40.0% |
| ! | TAAGCTTTTCCCTCTCACTT+TGG | - | chr5.3:8238172-8238191 | None:intergenic | 40.0% |
| ! | TATGTCCTCTTTTGCTCTTG+TGG | - | chr5.3:8237365-8237384 | None:intergenic | 40.0% |
| !! | TTAAGAGGTATCAGAGGTGT+TGG | + | chr5.3:8236143-8236162 | MS.gene43525:intron | 40.0% |
| !! | TTTGGTGTTTATGCCGTGTT+CGG | + | chr5.3:8237245-8237264 | MS.gene43525:intron | 40.0% |
| AAGCAAGCTATGGTCTCAGA+TGG | + | chr5.3:8238664-8238683 | MS.gene43525:CDS | 45.0% | |
| ACCAGTTAATGTATGCCGAC+AGG | + | chr5.3:8237764-8237783 | MS.gene43525:CDS | 45.0% | |
| ACTATTAGTCGACGAGGAAG+AGG | - | chr5.3:8238603-8238622 | None:intergenic | 45.0% | |
| AGCAAGCTATGGTCTCAGAT+GGG | + | chr5.3:8238665-8238684 | MS.gene43525:CDS | 45.0% | |
| AGGGAGAAAGGAACAATGTG+AGG | + | chr5.3:8237695-8237714 | MS.gene43525:CDS | 45.0% | |
| AGTAGCGGCGATCACAAAAA+GGG | + | chr5.3:8237820-8237839 | MS.gene43525:CDS | 45.0% | |
| ATGTGCCACAAGAGCAAAAG+AGG | + | chr5.3:8237357-8237376 | MS.gene43525:CDS | 45.0% | |
| CAAGAAATCCATAGCCGATC+AGG | + | chr5.3:8237996-8238015 | MS.gene43525:CDS | 45.0% | |
| CATAAACCATCCACCATCTG+AGG | - | chr5.3:8236470-8236489 | None:intergenic | 45.0% | |
| CCAGTTAATGTATGCCGACA+GGG | + | chr5.3:8237765-8237784 | MS.gene43525:CDS | 45.0% | |
| CCTCATGCACCAAATTGAGA+AGG | + | chr5.3:8236774-8236793 | MS.gene43525:CDS | 45.0% | |
| CTGAAAGATTACATCCAGCC+AGG | + | chr5.3:8235549-8235568 | MS.gene43525:CDS | 45.0% | |
| CTGATCGGCTATGGATTTCT+TGG | - | chr5.3:8237998-8238017 | None:intergenic | 45.0% | |
| GATGATGAAGCAGAACTCCA+AGG | + | chr5.3:8237385-8237404 | MS.gene43525:CDS | 45.0% | |
| GATGTTCGAGAAAGCTTACG+AGG | - | chr5.3:8238575-8238594 | None:intergenic | 45.0% | |
| GGTTGAGAAACTTTGCTACC+GGG | + | chr5.3:8237716-8237735 | MS.gene43525:CDS | 45.0% | |
| GGTTTCACTTCTTGACCTGA+AGG | - | chr5.3:8238485-8238504 | None:intergenic | 45.0% | |
| GTCAAAGGAGAACACAGCAT+TGG | + | chr5.3:8237450-8237469 | MS.gene43525:CDS | 45.0% | |
| TCTCAGAACCCAAAGTGAGA+GGG | + | chr5.3:8238160-8238179 | MS.gene43525:CDS | 45.0% | |
| TGTATGACACTGACACACGT+TGG | - | chr5.3:8236867-8236886 | None:intergenic | 45.0% | |
| TTAGTAGATGCAAGGACAGG+GGG | + | chr5.3:8237866-8237885 | MS.gene43525:CDS | 45.0% | |
| ! | AACACAGCATTGGAGATGAG+TGG | + | chr5.3:8237460-8237479 | MS.gene43525:CDS | 45.0% |
| ! | ACACAGCATTGGAGATGAGT+GGG | + | chr5.3:8237461-8237480 | MS.gene43525:CDS | 45.0% |
| ! | ATGAAGTACCTGATCGGCTA+TGG | - | chr5.3:8238007-8238026 | None:intergenic | 45.0% |
| ! | ATGCCATAATGCACTGATGG+TGG | + | chr5.3:8238288-8238307 | MS.gene43525:intron | 45.0% |
| ! | CGGTTCTGATACAAGTTGTG+TGG | + | chr5.3:8236678-8236697 | MS.gene43525:intron | 45.0% |
| ! | GATCACAAAAAGGGGTGTGA+TGG | + | chr5.3:8237829-8237848 | MS.gene43525:CDS | 45.0% |
| ! | GTGACGATGAAGTACCTGAT+CGG | - | chr5.3:8238013-8238032 | None:intergenic | 45.0% |
| ! | TTGTTGAGACAAGAGTGTGG+TGG | + | chr5.3:8238518-8238537 | MS.gene43525:CDS | 45.0% |
| !! | ACATTTCCTCAGATGGTGGA+TGG | + | chr5.3:8236461-8236480 | MS.gene43525:CDS | 45.0% |
| !! | CAGGATGACGTCATTTTCAG+AGG | - | chr5.3:8235831-8235850 | None:intergenic | 45.0% |
| !! | CCTTCTCAATTTGGTGCATG+AGG | - | chr5.3:8236777-8236796 | None:intergenic | 45.0% |
| !! | CTCAGATGGTGGATGGTTTA+TGG | + | chr5.3:8236468-8236487 | MS.gene43525:CDS | 45.0% |
| !! | GATGGTGGATGGTTTATGGA+CGG | + | chr5.3:8236472-8236491 | MS.gene43525:CDS | 45.0% |
| !! | TAGAAGAGGCATCCAAACCT+GGG | + | chr5.3:8237599-8237618 | MS.gene43525:CDS | 45.0% |
| !! | TTCGGTGTTGATGTCGTGTT+TGG | + | chr5.3:8236963-8236982 | MS.gene43525:intron | 45.0% |
| !!! | TTTTTTTTTTTGTTATAATT+AGG | - | chr5.3:8236232-8236251 | None:intergenic | 5.0% |
| AACCGTCTTGGGTCCCTAAT+GGG | - | chr5.3:8237625-8237644 | None:intergenic | 50.0% | |
| AGGGTTGAGATTGGAATGCG+AGG | + | chr5.3:8238425-8238444 | MS.gene43525:CDS | 50.0% | |
| ATCCAAACCTGGGCCCATTA+GGG | + | chr5.3:8237609-8237628 | MS.gene43525:CDS | 50.0% | |
| ATGAGTGGGATGGATAGACC+AGG | + | chr5.3:8237475-8237494 | MS.gene43525:CDS | 50.0% | |
| ATGCGAGGAGATGATGTGGT+AGG | + | chr5.3:8238440-8238459 | MS.gene43525:CDS | 50.0% | |
| CAATGCAGTGTTCCACGTCA+CGG | + | chr5.3:8236720-8236739 | MS.gene43525:intron | 50.0% | |
| CAGTAGCGGCGATCACAAAA+AGG | + | chr5.3:8237819-8237838 | MS.gene43525:CDS | 50.0% | |
| CCCTGTCGGCATACATTAAC+TGG | - | chr5.3:8237768-8237787 | None:intergenic | 50.0% | |
| CGCATTCCAATCTCAACCCT+TGG | - | chr5.3:8238425-8238444 | None:intergenic | 50.0% | |
| CTCCAGCTGTTCCTTTACCT+GGG | - | chr5.3:8237650-8237669 | None:intergenic | 50.0% | |
| CTCTCAGAACCCAAAGTGAG+AGG | + | chr5.3:8238159-8238178 | MS.gene43525:CDS | 50.0% | |
| CTGCAATGTCACCTCAGCAA+CGG | + | chr5.3:8237537-8237556 | MS.gene43525:CDS | 50.0% | |
| CTGGCAAGAAACTCACTGAC+AGG | + | chr5.3:8236749-8236768 | MS.gene43525:CDS | 50.0% | |
| GACATGTGCCAGTGTTGTGT+CGG | - | chr5.3:8237172-8237191 | None:intergenic | 50.0% | |
| GTAGCGGCGATCACAAAAAG+GGG | + | chr5.3:8237821-8237840 | MS.gene43525:CDS | 50.0% | |
| GTCATACACCGACACAACAC+TGG | + | chr5.3:8237161-8237180 | MS.gene43525:intron | 50.0% | |
| GTGAATATTCTGCGCAGCCT+TGG | - | chr5.3:8237405-8237424 | None:intergenic | 50.0% | |
| TAACTGGTGAAGCCGTCGTT+CGG | - | chr5.3:8237752-8237771 | None:intergenic | 50.0% | |
| TATGCCGACAGGGACTATGA+GGG | + | chr5.3:8237775-8237794 | MS.gene43525:CDS | 50.0% | |
| TCCTTTCTCCCTTCTCACCA+CGG | - | chr5.3:8237687-8237706 | None:intergenic | 50.0% | |
| TCTCCAGCTGTTCCTTTACC+TGG | - | chr5.3:8237651-8237670 | None:intergenic | 50.0% | |
| TGGAATGCGAGGAGATGATG+TGG | + | chr5.3:8238436-8238455 | MS.gene43525:CDS | 50.0% | |
| ! | AGCATTGGAGATGAGTGGGA+TGG | + | chr5.3:8237465-8237484 | MS.gene43525:CDS | 50.0% |
| !! | ATGCAAGGACAGGGGGTATT+GGG | + | chr5.3:8237873-8237892 | MS.gene43525:CDS | 50.0% |
| !! | GGTGGTGAACTTGGTGTGTA+GGG | + | chr5.3:8237894-8237913 | MS.gene43525:CDS | 50.0% |
| !! | GTAGAAGAGGCATCCAAACC+TGG | + | chr5.3:8237598-8237617 | MS.gene43525:CDS | 50.0% |
| ACAGCCCTCATAGTCCCTGT+CGG | - | chr5.3:8237782-8237801 | None:intergenic | 55.0% | |
| ATGTCACCTCAGCAACGGCA+TGG | + | chr5.3:8237542-8237561 | MS.gene43525:CDS | 55.0% | |
| CAACCGTCTTGGGTCCCTAA+TGG | - | chr5.3:8237626-8237645 | None:intergenic | 55.0% | |
| CATCCAAACCTGGGCCCATT+AGG | + | chr5.3:8237608-8237627 | MS.gene43525:CDS | 55.0% | |
| CATTAGGGACCCAAGACGGT+TGG | + | chr5.3:8237624-8237643 | MS.gene43525:CDS | 55.0% | |
| CCTTTCTCCCTTCTCACCAC+GGG | - | chr5.3:8237686-8237705 | None:intergenic | 55.0% | |
| GCAGGCTACCCTTCCATTGT+GGG | - | chr5.3:8237569-8237588 | None:intergenic | 55.0% | |
| GCTTGTCACGGAGACAGTAG+CGG | + | chr5.3:8237805-8237824 | MS.gene43525:CDS | 55.0% | |
| GGCATGGACCCACAATGGAA+GGG | + | chr5.3:8237558-8237577 | MS.gene43525:CDS | 55.0% | |
| GTATGCCGACAGGGACTATG+AGG | + | chr5.3:8237774-8237793 | MS.gene43525:CDS | 55.0% | |
| TGCAGGCTACCCTTCCATTG+TGG | - | chr5.3:8237570-8237589 | None:intergenic | 55.0% | |
| TTACCTGGGCCAACCGTCTT+GGG | - | chr5.3:8237636-8237655 | None:intergenic | 55.0% | |
| TTCCACGTCACGGATCAAGC+TGG | + | chr5.3:8236730-8236749 | MS.gene43525:CDS | 55.0% | |
| TTTACCTGGGCCAACCGTCT+TGG | - | chr5.3:8237637-8237656 | None:intergenic | 55.0% | |
| ! | AAGACGGTTGGCCCAGGTAA+AGG | + | chr5.3:8237636-8237655 | MS.gene43525:CDS | 55.0% |
| ! | GATGCAAGGACAGGGGGTAT+TGG | + | chr5.3:8237872-8237891 | MS.gene43525:CDS | 55.0% |
| !! | GGAACAGCTGGAGAGTGTTG+TGG | + | chr5.3:8237657-8237676 | MS.gene43525:CDS | 55.0% |
| !! | GGGGTATTGGGTGGTGAACT+TGG | + | chr5.3:8237885-8237904 | MS.gene43525:CDS | 55.0% |
| !! | GGGTGGTGAACTTGGTGTGT+AGG | + | chr5.3:8237893-8237912 | MS.gene43525:CDS | 55.0% |
| CCCGTGGTGAGAAGGGAGAA+AGG | + | chr5.3:8237683-8237702 | MS.gene43525:CDS | 60.0% | |
| CGGCATGGACCCACAATGGA+AGG | + | chr5.3:8237557-8237576 | MS.gene43525:CDS | 60.0% | |
| GCAACGGCATGGACCCACAA+TGG | + | chr5.3:8237553-8237572 | MS.gene43525:CDS | 60.0% | |
| GGCCCAGGTAAAGGAACAGC+TGG | + | chr5.3:8237645-8237664 | MS.gene43525:CDS | 60.0% | |
| GGCCCATTAGGGACCCAAGA+CGG | + | chr5.3:8237620-8237639 | MS.gene43525:CDS | 60.0% | |
| GTGGTGACCCGTGGTGAGAA+GGG | + | chr5.3:8237676-8237695 | MS.gene43525:CDS | 60.0% | |
| TGCCAGCTTGATCCGTGACG+TGG | - | chr5.3:8236735-8236754 | None:intergenic | 60.0% | |
| TGTGGTGACCCGTGGTGAGA+AGG | + | chr5.3:8237675-8237694 | MS.gene43525:CDS | 60.0% | |
| ! | GTCCCTAATGGGCCCAGGTT+TGG | - | chr5.3:8237614-8237633 | None:intergenic | 60.0% |
| !! | CAAGGACAGGGGGTATTGGG+TGG | + | chr5.3:8237876-8237895 | MS.gene43525:CDS | 60.0% |
| !! | GAGAGTGTTGTGGTGACCCG+TGG | + | chr5.3:8237667-8237686 | MS.gene43525:CDS | 60.0% |
| GAGGGCTGTCGCGCTTGTCA+CGG | + | chr5.3:8237793-8237812 | MS.gene43525:CDS | 65.0% | |
| GGCGCACACACACCGAACGA+CGG | + | chr5.3:8237737-8237756 | MS.gene43525:CDS | 65.0% | |
| GTGGGTCCATGCCGTTGCTG+AGG | - | chr5.3:8237551-8237570 | None:intergenic | 65.0% | |
| ! | CTTGGGTCCCTAATGGGCCC+AGG | - | chr5.3:8237619-8237638 | None:intergenic | 65.0% |
| !! | TCGTTCGGTGTGTGTGCGCC+CGG | - | chr5.3:8237737-8237756 | None:intergenic | 65.0% |
| ! | GGACCCAAGACGGTTGGCCC+AGG | + | chr5.3:8237630-8237649 | MS.gene43525:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8235500 | 8238724 | 8235500 | ID=MS.gene43525 |
| chr5.3 | mRNA | 8235500 | 8238724 | 8235500 | ID=MS.gene43525.t1;Parent=MS.gene43525 |
| chr5.3 | exon | 8235500 | 8235570 | 8235500 | ID=MS.gene43525.t1.exon1;Parent=MS.gene43525.t1 |
| chr5.3 | CDS | 8235500 | 8235570 | 8235500 | ID=cds.MS.gene43525.t1;Parent=MS.gene43525.t1 |
| chr5.3 | exon | 8235665 | 8235710 | 8235665 | ID=MS.gene43525.t1.exon2;Parent=MS.gene43525.t1 |
| chr5.3 | CDS | 8235665 | 8235710 | 8235665 | ID=cds.MS.gene43525.t1;Parent=MS.gene43525.t1 |
| chr5.3 | exon | 8236379 | 8236493 | 8236379 | ID=MS.gene43525.t1.exon3;Parent=MS.gene43525.t1 |
| chr5.3 | CDS | 8236379 | 8236493 | 8236379 | ID=cds.MS.gene43525.t1;Parent=MS.gene43525.t1 |
| chr5.3 | exon | 8236728 | 8236795 | 8236728 | ID=MS.gene43525.t1.exon4;Parent=MS.gene43525.t1 |
| chr5.3 | CDS | 8236728 | 8236795 | 8236728 | ID=cds.MS.gene43525.t1;Parent=MS.gene43525.t1 |
| chr5.3 | exon | 8237352 | 8238017 | 8237352 | ID=MS.gene43525.t1.exon5;Parent=MS.gene43525.t1 |
| chr5.3 | CDS | 8237352 | 8238017 | 8237352 | ID=cds.MS.gene43525.t1;Parent=MS.gene43525.t1 |
| chr5.3 | exon | 8238125 | 8238232 | 8238125 | ID=MS.gene43525.t1.exon6;Parent=MS.gene43525.t1 |
| chr5.3 | CDS | 8238125 | 8238232 | 8238125 | ID=cds.MS.gene43525.t1;Parent=MS.gene43525.t1 |
| chr5.3 | exon | 8238335 | 8238724 | 8238335 | ID=MS.gene43525.t1.exon7;Parent=MS.gene43525.t1 |
| chr5.3 | CDS | 8238335 | 8238724 | 8238335 | ID=cds.MS.gene43525.t1;Parent=MS.gene43525.t1 |
| Gene Sequence |
| Protein sequence |
