Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60184.t1 | XP_003608551.2 | 91.2 | 487 | 42 | 1 | 26 | 511 | 4 | 490 | 2.40E-256 | 894.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60184.t1 | Q9FHP1 | 47.9 | 484 | 229 | 9 | 41 | 509 | 2 | 477 | 6.7e-114 | 412.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60184.t1 | G7JF79 | 91.2 | 487 | 42 | 1 | 26 | 511 | 4 | 490 | 1.7e-256 | 894.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33646 | MS.gene60184 | PPI |
| MS.gene60184 | MS.gene02506 | PPI |
| MS.gene60184 | MS.gene052926 | PPI |
| MS.gene93159 | MS.gene60184 | PPI |
| MS.gene60184 | MS.gene02630 | PPI |
| MS.gene31860 | MS.gene60184 | PPI |
| MS.gene013709 | MS.gene60184 | PPI |
| MS.gene60184 | MS.gene026670 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60184.t1 | MTR_4g097380 | 91.170 | 487 | 42 | 1 | 26 | 511 | 4 | 490 | 0.0 | 900 |
| MS.gene60184.t1 | MTR_5g015170 | 53.878 | 490 | 203 | 7 | 41 | 511 | 1 | 486 | 0.0 | 519 |
| MS.gene60184.t1 | MTR_3g088885 | 42.691 | 431 | 238 | 6 | 48 | 477 | 7 | 429 | 3.49e-115 | 347 |
| MS.gene60184.t1 | MTR_5g047260 | 42.506 | 447 | 232 | 7 | 36 | 478 | 2 | 427 | 6.72e-114 | 344 |
| MS.gene60184.t1 | MTR_7g028050 | 40.086 | 464 | 252 | 6 | 50 | 511 | 1 | 440 | 8.49e-109 | 331 |
| MS.gene60184.t1 | MTR_1g029520 | 42.643 | 401 | 223 | 3 | 66 | 464 | 254 | 649 | 1.97e-106 | 332 |
| MS.gene60184.t1 | MTR_7g022470 | 39.177 | 462 | 259 | 5 | 50 | 511 | 10 | 449 | 1.08e-105 | 323 |
| MS.gene60184.t1 | MTR_4g101950 | 37.500 | 456 | 249 | 5 | 53 | 502 | 9 | 434 | 3.57e-96 | 298 |
| MS.gene60184.t1 | MTR_5g011580 | 37.284 | 464 | 253 | 7 | 46 | 502 | 2 | 434 | 2.04e-94 | 294 |
| MS.gene60184.t1 | MTR_5g047260 | 42.618 | 359 | 181 | 7 | 36 | 390 | 2 | 339 | 1.86e-88 | 276 |
| MS.gene60184.t1 | MTR_5g047260 | 42.249 | 329 | 165 | 7 | 36 | 360 | 2 | 309 | 9.03e-79 | 249 |
| MS.gene60184.t1 | MTR_7g028050 | 38.728 | 346 | 195 | 4 | 166 | 511 | 9 | 337 | 2.72e-71 | 231 |
| MS.gene60184.t1 | MTR_1g012740 | 40.367 | 109 | 56 | 4 | 41 | 143 | 1 | 106 | 7.31e-15 | 72.8 |
| MS.gene60184.t1 | MTR_1g012740 | 35.417 | 96 | 56 | 1 | 327 | 422 | 54 | 143 | 1.85e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60184.t1 | AT5G65890 | 48.247 | 485 | 226 | 9 | 41 | 509 | 2 | 477 | 9.06e-144 | 422 |
| MS.gene60184.t1 | AT5G65890 | 48.247 | 485 | 226 | 9 | 41 | 509 | 2 | 477 | 9.06e-144 | 422 |
| MS.gene60184.t1 | AT1G76990 | 44.213 | 432 | 215 | 6 | 41 | 464 | 1 | 414 | 3.45e-118 | 355 |
| MS.gene60184.t1 | AT1G76990 | 44.213 | 432 | 215 | 6 | 41 | 464 | 1 | 414 | 3.45e-118 | 355 |
| MS.gene60184.t1 | AT1G76990 | 44.213 | 432 | 215 | 6 | 41 | 464 | 1 | 414 | 3.45e-118 | 355 |
| MS.gene60184.t1 | AT1G76990 | 44.213 | 432 | 215 | 6 | 41 | 464 | 1 | 414 | 3.45e-118 | 355 |
| MS.gene60184.t1 | AT1G76990 | 44.213 | 432 | 215 | 6 | 41 | 464 | 1 | 414 | 3.45e-118 | 355 |
| MS.gene60184.t1 | AT5G65890 | 45.958 | 433 | 210 | 8 | 93 | 509 | 1 | 425 | 5.02e-117 | 352 |
| MS.gene60184.t1 | AT5G65890 | 45.958 | 433 | 210 | 8 | 93 | 509 | 1 | 425 | 5.02e-117 | 352 |
| MS.gene60184.t1 | AT5G25320 | 40.726 | 496 | 259 | 9 | 48 | 510 | 7 | 500 | 7.05e-115 | 348 |
| MS.gene60184.t1 | AT1G69040 | 41.350 | 474 | 254 | 8 | 40 | 511 | 2 | 453 | 3.22e-114 | 345 |
| MS.gene60184.t1 | AT1G69040 | 41.810 | 464 | 247 | 7 | 50 | 511 | 7 | 449 | 5.49e-114 | 345 |
| MS.gene60184.t1 | AT2G03730 | 41.844 | 423 | 228 | 4 | 49 | 465 | 10 | 420 | 3.15e-104 | 320 |
| MS.gene60184.t1 | AT2G03730 | 41.844 | 423 | 228 | 4 | 49 | 465 | 10 | 420 | 3.15e-104 | 320 |
| MS.gene60184.t1 | AT5G25320 | 39.741 | 463 | 246 | 8 | 79 | 510 | 1 | 461 | 3.79e-103 | 317 |
| MS.gene60184.t1 | AT3G01990 | 40.821 | 414 | 221 | 6 | 51 | 461 | 3 | 395 | 5.27e-98 | 303 |
| MS.gene60184.t1 | AT3G01990 | 40.821 | 414 | 221 | 6 | 51 | 461 | 3 | 395 | 5.27e-98 | 303 |
| MS.gene60184.t1 | AT3G01990 | 40.821 | 414 | 221 | 6 | 51 | 461 | 17 | 409 | 5.63e-98 | 303 |
| MS.gene60184.t1 | AT3G01990 | 40.821 | 414 | 221 | 6 | 51 | 461 | 17 | 409 | 5.63e-98 | 303 |
| MS.gene60184.t1 | AT4G22780 | 42.092 | 411 | 204 | 5 | 53 | 459 | 9 | 389 | 7.10e-98 | 303 |
| MS.gene60184.t1 | AT4G22780 | 42.092 | 411 | 204 | 5 | 53 | 459 | 9 | 389 | 7.10e-98 | 303 |
| MS.gene60184.t1 | AT1G12420 | 38.829 | 461 | 250 | 5 | 53 | 511 | 9 | 439 | 7.39e-98 | 303 |
| MS.gene60184.t1 | AT3G01990 | 41.546 | 414 | 218 | 7 | 51 | 461 | 17 | 409 | 8.04e-98 | 303 |
| MS.gene60184.t1 | AT3G01990 | 40.821 | 414 | 221 | 6 | 51 | 461 | 3 | 395 | 8.30e-98 | 302 |
| MS.gene60184.t1 | AT5G65890 | 45.014 | 351 | 177 | 6 | 170 | 509 | 18 | 363 | 1.87e-90 | 281 |
| MS.gene60184.t1 | AT5G25320 | 44.809 | 366 | 175 | 7 | 48 | 388 | 7 | 370 | 7.51e-90 | 280 |
| MS.gene60184.t1 | AT3G01990 | 41.399 | 343 | 177 | 6 | 51 | 390 | 17 | 338 | 1.03e-79 | 253 |
| MS.gene60184.t1 | AT3G01990 | 41.399 | 343 | 177 | 6 | 51 | 390 | 3 | 324 | 1.71e-79 | 252 |
| MS.gene60184.t1 | AT3G01990 | 41.399 | 343 | 177 | 6 | 51 | 390 | 17 | 338 | 2.11e-79 | 252 |
| MS.gene60184.t1 | AT1G12420 | 36.020 | 397 | 222 | 5 | 117 | 511 | 1 | 367 | 1.81e-72 | 235 |
| MS.gene60184.t1 | AT3G01990 | 40.777 | 309 | 159 | 6 | 51 | 356 | 17 | 304 | 3.58e-68 | 222 |
| MS.gene60184.t1 | AT3G01990 | 40.777 | 309 | 159 | 6 | 51 | 356 | 3 | 290 | 3.81e-68 | 221 |
Find 0 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAATTGAAAAATC+TGG | - | 32965:51513-51532 | None:intergenic | 10.0% |
| !! | AATTAAGTAAAGTTAAATTA+AGG | - | 32965:50302-50321 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAGAGAAAAGAA+CGG | + | 32965:51674-51693 | MS.gene60184:intron | 15.0% |
| !!! | ATTATACCAAAATTTTCTAT+TGG | + | 32965:52581-52600 | MS.gene60184:CDS | 15.0% |
| !!! | TTTTCAATTAATTATTTGCA+AGG | + | 32965:51516-51535 | MS.gene60184:intron | 15.0% |
| !! | AGATTATTCATCGAAAATAT+TGG | - | 32965:51735-51754 | None:intergenic | 20.0% |
| !! | ATGAAAGCCTAATTTAAATA+TGG | - | 32965:51803-51822 | None:intergenic | 20.0% |
| !!! | AAATAGTGCATATCTTTTTT+GGG | - | 32965:50133-50152 | None:intergenic | 20.0% |
| !!! | ACTATGATGATGTTAATTTT+TGG | - | 32965:51872-51891 | None:intergenic | 20.0% |
| !!! | TGCAATTCTAAGATTATTTT+TGG | + | 32965:50545-50564 | MS.gene60184:intron | 20.0% |
| !!! | TGTATGATTTGGAAATTATA+AGG | - | 32965:50447-50466 | None:intergenic | 20.0% |
| !!! | TTTGTTTTATGCATTTACAA+TGG | + | 32965:52184-52203 | MS.gene60184:intron | 20.0% |
| ! | AAATCATACATTTCTTCTGA+TGG | + | 32965:50457-50476 | MS.gene60184:CDS | 25.0% |
| ! | AAGCCTAATTTAAATATGGT+TGG | - | 32965:51799-51818 | None:intergenic | 25.0% |
| ! | AATACTCCAATTAAAAGACA+GGG | - | 32965:51994-52013 | None:intergenic | 25.0% |
| ! | AATATCTCTACTATTGTTAC+TGG | - | 32965:52564-52583 | None:intergenic | 25.0% |
| ! | ACAATATCAAACAACAACTT+AGG | - | 32965:51412-51431 | None:intergenic | 25.0% |
| ! | AGCCTAATTTAAATATGGTT+GGG | - | 32965:51798-51817 | None:intergenic | 25.0% |
| ! | ATATATGAAACAAGAAACAC+GGG | - | 32965:50206-50225 | None:intergenic | 25.0% |
| ! | ATCACAATTCAATTAATGTG+TGG | + | 32965:51591-51610 | MS.gene60184:intron | 25.0% |
| ! | ATCAGAAGAAATGTATGATT+TGG | - | 32965:50458-50477 | None:intergenic | 25.0% |
| ! | CATATATGAAACAAGAAACA+CGG | - | 32965:50207-50226 | None:intergenic | 25.0% |
| ! | GACTGTTAAACAAAATGATA+AGG | + | 32965:51629-51648 | MS.gene60184:intron | 25.0% |
| ! | TAATTTAAATATGGTTGGGA+GGG | - | 32965:51794-51813 | None:intergenic | 25.0% |
| ! | TATTTGCACTCAAAACAAAA+CGG | + | 32965:52316-52335 | MS.gene60184:CDS | 25.0% |
| ! | TGTACACATTGTTTATATTG+CGG | - | 32965:50520-50539 | None:intergenic | 25.0% |
| ! | TTATTCATCGAAAATATTGG+TGG | - | 32965:51732-51751 | None:intergenic | 25.0% |
| ! | TTGATAAAAAGAGAAATTGG+AGG | + | 32965:52485-52504 | MS.gene60184:CDS | 25.0% |
| !! | AATTGGAGGTTCAATTATTT+TGG | + | 32965:52499-52518 | MS.gene60184:CDS | 25.0% |
| !! | ATATTGGTGCAATTTTTATG+TGG | + | 32965:51548-51567 | MS.gene60184:intron | 25.0% |
| !! | ATGCTTCCAATAGAAAATTT+TGG | - | 32965:52590-52609 | None:intergenic | 25.0% |
| !!! | AAAAAAATCTGAGATTTTGC+AGG | + | 32965:50838-50857 | MS.gene60184:intron | 25.0% |
| !!! | CAAATAGTGCATATCTTTTT+TGG | - | 32965:50134-50153 | None:intergenic | 25.0% |
| !!! | GAGTTGATAAAAAGAGAAAT+TGG | + | 32965:52482-52501 | MS.gene60184:CDS | 25.0% |
| AATTTAAATATGGTTGGGAG+GGG | - | 32965:51793-51812 | None:intergenic | 30.0% | |
| ACAAAAAACAAAAGCCTGAA+AGG | - | 32965:52169-52188 | None:intergenic | 30.0% | |
| ACAAACTTAGTATAGTACCT+AGG | - | 32965:50070-50089 | None:intergenic | 30.0% | |
| ATACTCCAATTAAAAGACAG+GGG | - | 32965:51993-52012 | None:intergenic | 30.0% | |
| ATTTGCACTCAAAACAAAAC+GGG | + | 32965:52317-52336 | MS.gene60184:CDS | 30.0% | |
| CAATACTCCAATTAAAAGAC+AGG | - | 32965:51995-52014 | None:intergenic | 30.0% | |
| CCTGAAAGGTTATGATTAAT+GGG | - | 32965:52155-52174 | None:intergenic | 30.0% | |
| CTAATTTAAATATGGTTGGG+AGG | - | 32965:51795-51814 | None:intergenic | 30.0% | |
| CTCCCAACCATATTTAAATT+AGG | + | 32965:51793-51812 | MS.gene60184:intron | 30.0% | |
| TATAGCAGCGATTAAACATA+GGG | - | 32965:52108-52127 | None:intergenic | 30.0% | |
| TATCAATCTGTGAACACAAA+TGG | - | 32965:50369-50388 | None:intergenic | 30.0% | |
| TATTTGATTGTTAGTTCAGC+CGG | + | 32965:50148-50167 | MS.gene60184:intron | 30.0% | |
| TGCAAGGACAAAAGATATAT+TGG | + | 32965:51532-51551 | MS.gene60184:intron | 30.0% | |
| TTCTATGTTACAACATGTTC+AGG | + | 32965:52434-52453 | MS.gene60184:CDS | 30.0% | |
| ! | TCTTGTTTCATATATGTGCA+GGG | + | 32965:50211-50230 | MS.gene60184:intron | 30.0% |
| ! | TTCTTGTTTCATATATGTGC+AGG | + | 32965:50210-50229 | MS.gene60184:intron | 30.0% |
| ! | TTTCTATTGGAAGCATGATT+TGG | + | 32965:52594-52613 | MS.gene60184:CDS | 30.0% |
| ! | TTTTCGATGAATAATCTCTG+CGG | + | 32965:51738-51757 | MS.gene60184:intron | 30.0% |
| AACTTAGTATAGTACCTAGG+TGG | - | 32965:50067-50086 | None:intergenic | 35.0% | |
| AAGAACGGTAACCATGTTAT+TGG | + | 32965:51689-51708 | MS.gene60184:intron | 35.0% | |
| ACACTATACTGCATTTGTAG+AGG | + | 32965:50738-50757 | MS.gene60184:intron | 35.0% | |
| ACTATTGTTACTGGATGATG+AGG | - | 32965:52555-52574 | None:intergenic | 35.0% | |
| AGAGATATCAGTGGTACTAA+TGG | + | 32965:50991-51010 | MS.gene60184:CDS | 35.0% | |
| AGTTGCATGCATTATCTATC+CGG | + | 32965:51063-51082 | MS.gene60184:CDS | 35.0% | |
| ATTATCAGCCAACAAAACTC+AGG | + | 32965:49951-49970 | MS.gene60184:CDS | 35.0% | |
| CAATGTATCATGTGTTACAC+AGG | + | 32965:52019-52038 | MS.gene60184:intron | 35.0% | |
| CCCATTAATCATAACCTTTC+AGG | + | 32965:52152-52171 | MS.gene60184:intron | 35.0% | |
| CTATAGCAGCGATTAAACAT+AGG | - | 32965:52109-52128 | None:intergenic | 35.0% | |
| GCCTGAAAGGTTATGATTAA+TGG | - | 32965:52156-52175 | None:intergenic | 35.0% | |
| TATGCATTTACAATGGTTCG+TGG | + | 32965:52191-52210 | MS.gene60184:intron | 35.0% | |
| TCAATTTCTCTATCGATGTG+AGG | - | 32965:50022-50041 | None:intergenic | 35.0% | |
| TCATACATTTCTTCTGATGG+CGG | + | 32965:50460-50479 | MS.gene60184:CDS | 35.0% | |
| TCCATAACAAGACTTGAGTT+TGG | + | 32965:52383-52402 | MS.gene60184:CDS | 35.0% | |
| TTAATCCATAGCATGAACTC+CGG | - | 32965:50170-50189 | None:intergenic | 35.0% | |
| TTGCTCTCATATTTCGTGTT+TGG | + | 32965:50655-50674 | MS.gene60184:intron | 35.0% | |
| TTTGCACTCAAAACAAAACG+GGG | + | 32965:52318-52337 | MS.gene60184:CDS | 35.0% | |
| ! | AGTTTCCCCTGTCTTTTAAT+TGG | + | 32965:51985-52004 | MS.gene60184:intron | 35.0% |
| !! | ATCAGTGGTACTAATGGATT+TGG | + | 32965:50997-51016 | MS.gene60184:CDS | 35.0% |
| !! | CTTGTTTTCAGAGATATCAG+TGG | + | 32965:50982-51001 | MS.gene60184:CDS | 35.0% |
| !! | TCAGTGGTACTAATGGATTT+GGG | + | 32965:50998-51017 | MS.gene60184:CDS | 35.0% |
| !! | TCCAAACTCAAGTCTTGTTA+TGG | - | 32965:52387-52406 | None:intergenic | 35.0% |
| !! | TTACACAGGAGTACTTTATC+AGG | + | 32965:52033-52052 | MS.gene60184:intron | 35.0% |
| AAACACGCATGGGATACTAT+TGG | + | 32965:50393-50412 | MS.gene60184:CDS | 40.0% | |
| AAGAAAGAATCCATCCACCT+AGG | + | 32965:50050-50069 | MS.gene60184:CDS | 40.0% | |
| AATCGCTCTCTATCGTTGAT+TGG | - | 32965:51109-51128 | None:intergenic | 40.0% | |
| ACAACGAAACCGAAAAGCAA+AGG | + | 32965:52078-52097 | MS.gene60184:CDS | 40.0% | |
| ACATCATATCTGCAAAAGCC+TGG | + | 32965:51026-51045 | MS.gene60184:CDS | 40.0% | |
| ACGACGAGAGATATTGAACT+AGG | - | 32965:50099-50118 | None:intergenic | 40.0% | |
| AGCGTCTCATCAACAATTTC+AGG | + | 32965:52627-52646 | MS.gene60184:CDS | 40.0% | |
| ATGTTAAAAAGCTCCACCAC+CGG | + | 32965:51202-51221 | MS.gene60184:CDS | 40.0% | |
| ATTGATAGAGCAAACACGCA+TGG | + | 32965:50382-50401 | MS.gene60184:CDS | 40.0% | |
| CCATATCCTCTACGAAACAA+TGG | - | 32965:49982-50001 | None:intergenic | 40.0% | |
| CCATTGTTTCGTAGAGGATA+TGG | + | 32965:49979-49998 | MS.gene60184:CDS | 40.0% | |
| GAGTACTTTATCAGGAACCA+GGG | + | 32965:52041-52060 | MS.gene60184:CDS | 40.0% | |
| GATAATCGATGACTGATGCA+TGG | - | 32965:49937-49956 | None:intergenic | 40.0% | |
| GCAGCTATGGAATCTTTGTT+AGG | + | 32965:49906-49925 | MS.gene60184:CDS | 40.0% | |
| GCATGCAACTTTGTCATGAT+GGG | - | 32965:51053-51072 | None:intergenic | 40.0% | |
| GGTTCACAGTTCTCCATATA+GGG | + | 32965:52520-52539 | MS.gene60184:CDS | 40.0% | |
| GTATCTATCCACCGAAACAT+GGG | - | 32965:51344-51363 | None:intergenic | 40.0% | |
| GTTGAACCATTGTTTCGTAG+AGG | + | 32965:49973-49992 | MS.gene60184:CDS | 40.0% | |
| GTTTCTGAACTATGCAGCTA+TGG | + | 32965:49893-49912 | MS.gene60184:CDS | 40.0% | |
| TAGTATAGTACCTAGGTGGA+TGG | - | 32965:50063-50082 | None:intergenic | 40.0% | |
| TATTGCACTGCAATGTTGCA+GGG | + | 32965:52281-52300 | MS.gene60184:intron | 40.0% | |
| TCCATGTGAAGGATCAGATA+GGG | + | 32965:50580-50599 | MS.gene60184:CDS | 40.0% | |
| TGATTCATGCAGAAACTGCA+CGG | + | 32965:50247-50266 | MS.gene60184:CDS | 40.0% | |
| TGCAATGTTGCAGGGATTAA+AGG | + | 32965:52289-52308 | MS.gene60184:intron | 40.0% | |
| TGCATGCAACTTTGTCATGA+TGG | - | 32965:51054-51073 | None:intergenic | 40.0% | |
| TGGTTCACAGTTCTCCATAT+AGG | + | 32965:52519-52538 | MS.gene60184:CDS | 40.0% | |
| TTATTGCACTGCAATGTTGC+AGG | + | 32965:52280-52299 | MS.gene60184:intron | 40.0% | |
| TTCCATGTGAAGGATCAGAT+AGG | + | 32965:50579-50598 | MS.gene60184:CDS | 40.0% | |
| TTGATAGAGCAAACACGCAT+GGG | + | 32965:50383-50402 | MS.gene60184:CDS | 40.0% | |
| ! | AAGACTTGAGTTTGGAGTAG+AGG | + | 32965:52391-52410 | MS.gene60184:CDS | 40.0% |
| ! | AGACTTGAGTTTGGAGTAGA+GGG | + | 32965:52392-52411 | MS.gene60184:CDS | 40.0% |
| ! | GATATCTCTGAAAACAAGCC+AGG | - | 32965:50980-50999 | None:intergenic | 40.0% |
| ! | GCAATATGAGGTGTTTCATG+CGG | + | 32965:51450-51469 | MS.gene60184:CDS | 40.0% |
| !! | TGGTTCAACCTGAGTTTTGT+TGG | - | 32965:49962-49981 | None:intergenic | 40.0% |
| AACAGTGCAACACTGTTGCA+AGG | + | 32965:50907-50926 | MS.gene60184:CDS | 45.0% | |
| AATGTCGCCATAGAGGTGAT+AGG | + | 32965:50944-50963 | MS.gene60184:CDS | 45.0% | |
| AATGTGATAGAGGCCAACGA+AGG | + | 32965:51154-51173 | MS.gene60184:CDS | 45.0% | |
| ACAGTGCAACACTGTTGCAA+GGG | + | 32965:50908-50927 | MS.gene60184:CDS | 45.0% | |
| AGAAGCAAATGTCGCCATAG+AGG | + | 32965:50937-50956 | MS.gene60184:CDS | 45.0% | |
| AGCACAAAAGGCGGTATGAT+GGG | + | 32965:51317-51336 | MS.gene60184:CDS | 45.0% | |
| ATAATGGCGGTGAGCACAAA+AGG | + | 32965:51305-51324 | MS.gene60184:CDS | 45.0% | |
| ATCCGTTCCTATCACCTCTA+TGG | - | 32965:50954-50973 | None:intergenic | 45.0% | |
| ATGGCGACATTTGCTTCTTG+TGG | - | 32965:50935-50954 | None:intergenic | 45.0% | |
| CATGACAGTGTTCCATGTGA+AGG | + | 32965:50569-50588 | MS.gene60184:intron | 45.0% | |
| CGTATCTATCCACCGAAACA+TGG | - | 32965:51345-51364 | None:intergenic | 45.0% | |
| GAGACTCTACAAATGCAGCA+CGG | + | 32965:50677-50696 | MS.gene60184:intron | 45.0% | |
| GAGGATTGAGAGTCCCTATA+TGG | - | 32965:52536-52555 | None:intergenic | 45.0% | |
| GATACTATTGGAGATGGTCC+AGG | + | 32965:50405-50424 | MS.gene60184:CDS | 45.0% | |
| GCATGGGATACTATTGGAGA+TGG | + | 32965:50399-50418 | MS.gene60184:CDS | 45.0% | |
| GCTCACAGACATGCAATATG+AGG | + | 32965:51438-51457 | MS.gene60184:CDS | 45.0% | |
| GTAGAGGGTGAAACAGCAAT+AGG | + | 32965:52407-52426 | MS.gene60184:CDS | 45.0% | |
| GTCAGTGAATGTGAGAAGCA+GGG | + | 32965:51381-51400 | MS.gene60184:CDS | 45.0% | |
| GTTTCGGTGGATAGATACGA+GGG | + | 32965:51346-51365 | MS.gene60184:CDS | 45.0% | |
| TCAGATCCGGAATGTGATAG+AGG | + | 32965:51144-51163 | MS.gene60184:CDS | 45.0% | |
| TCCCTATCTGATCCTTCACA+TGG | - | 32965:50584-50603 | None:intergenic | 45.0% | |
| TCGATGAATAATCTCTGCGG+TGG | + | 32965:51741-51760 | MS.gene60184:intron | 45.0% | |
| TCTCGTGAATCACATTGAGC+AGG | + | 32965:50623-50642 | MS.gene60184:CDS | 45.0% | |
| TGCATGCATTATCTATCCGG+AGG | + | 32965:51066-51085 | MS.gene60184:CDS | 45.0% | |
| TGTCAAGATTCGAACTACCC+TGG | - | 32965:52061-52080 | None:intergenic | 45.0% | |
| TGTTTCGGTGGATAGATACG+AGG | + | 32965:51345-51364 | MS.gene60184:CDS | 45.0% | |
| TTAAATATGGTTGGGAGGGG+AGG | - | 32965:51790-51809 | None:intergenic | 45.0% | |
| TTTCGGTGGATAGATACGAG+GGG | + | 32965:51347-51366 | MS.gene60184:CDS | 45.0% | |
| TTTCTCTGCCTTTCCTTCGT+TGG | - | 32965:51170-51189 | None:intergenic | 45.0% | |
| ! | AATTGTTGATGAGACGCTCG+AGG | - | 32965:52625-52644 | None:intergenic | 45.0% |
| ! | GGAGTACTTTATCAGGAACC+AGG | + | 32965:52040-52059 | MS.gene60184:intron | 45.0% |
| !! | AACTTTGTCATGATGGGTCC+AGG | - | 32965:51047-51066 | None:intergenic | 45.0% |
| !! | ACATTTCTTCTGATGGCGGA+TGG | + | 32965:50464-50483 | MS.gene60184:CDS | 45.0% |
| !! | TAGGGTGAGCCTTTGCTTTT+CGG | - | 32965:52090-52109 | None:intergenic | 45.0% |
| !! | TTCTGATGGCGGATGGTTAA+TGG | + | 32965:50471-50490 | MS.gene60184:CDS | 45.0% |
| !! | TTAATATAAATTGTATTAAT+TGG | - | 32965:51965-51984 | None:intergenic | 5.0% |
| CAAAACGGGGCTACTATCGA+AGG | + | 32965:52331-52350 | MS.gene60184:CDS | 50.0% | |
| CACCAGATGATGTACGCAGT+CGG | + | 32965:51250-51269 | MS.gene60184:CDS | 50.0% | |
| CGCAGTTCGCACCAATAACA+TGG | - | 32965:51703-51722 | None:intergenic | 50.0% | |
| CGCCATAGAGGTGATAGGAA+CGG | + | 32965:50949-50968 | MS.gene60184:CDS | 50.0% | |
| GAGCACAAAAGGCGGTATGA+TGG | + | 32965:51316-51335 | MS.gene60184:CDS | 50.0% | |
| GATAGAGGCCAACGAAGGAA+AGG | + | 32965:51159-51178 | MS.gene60184:CDS | 50.0% | |
| GCACAAAAGGCGGTATGATG+GGG | + | 32965:51318-51337 | MS.gene60184:CDS | 50.0% | |
| GGTCAGTGAATGTGAGAAGC+AGG | + | 32965:51380-51399 | MS.gene60184:CDS | 50.0% | |
| GTGATAGGAACGGATCAACC+TGG | + | 32965:50959-50978 | MS.gene60184:CDS | 50.0% | |
| TGTTACCTCAAACAGCCCCA+TGG | + | 32965:51474-51493 | MS.gene60184:CDS | 50.0% | |
| TTCAGCCGGAGTTCATGCTA+TGG | + | 32965:50162-50181 | MS.gene60184:intron | 50.0% | |
| TTCATGCAGAAACTGCACGG+TGG | + | 32965:50250-50269 | MS.gene60184:CDS | 50.0% | |
| ! | CGTTGGCCTCTATCACATTC+CGG | - | 32965:51153-51172 | None:intergenic | 50.0% |
| ! | GTATGATGGGGCCCATGTTT+CGG | + | 32965:51330-51349 | MS.gene60184:CDS | 50.0% |
| ! | TCTCTATCGTTGATTGGCCC+AGG | - | 32965:51103-51122 | None:intergenic | 50.0% |
| ! | TGGAGTACCTGTTCTGCCAT+GGG | - | 32965:51493-51512 | None:intergenic | 50.0% |
| !! | GATGGCGGATGGTTAATGGA+TGG | + | 32965:50475-50494 | MS.gene60184:CDS | 50.0% |
| AAACAGCCCCATGGCAGAAC+AGG | + | 32965:51483-51502 | MS.gene60184:CDS | 55.0% | |
| AGAGTTGTCATGCCTGCCAC+GGG | + | 32965:51281-51300 | MS.gene60184:CDS | 55.0% | |
| ATGGCGGTGAGCACAAAAGG+CGG | + | 32965:51308-51327 | MS.gene60184:CDS | 55.0% | |
| CAGAAACTGCACGGTGGTGA+AGG | + | 32965:50256-50275 | MS.gene60184:CDS | 55.0% | |
| CGACTGCGTACATCATCTGG+TGG | - | 32965:51252-51271 | None:intergenic | 55.0% | |
| CTCTATCGATGTGAGGCTGC+TGG | - | 32965:50015-50034 | None:intergenic | 55.0% | |
| CTCTGCGGTGGAATCTGACA+CGG | + | 32965:51753-51772 | MS.gene60184:intron | 55.0% | |
| GAGAGTTGTCATGCCTGCCA+CGG | + | 32965:51280-51299 | MS.gene60184:CDS | 55.0% | |
| GATACGAGGGGCGAGATTAC+TGG | + | 32965:51359-51378 | MS.gene60184:CDS | 55.0% | |
| GGTCTAGATCTGTCAACGCC+TGG | - | 32965:50426-50445 | None:intergenic | 55.0% | |
| TTCTGCCATGGGGCTGTTTG+AGG | - | 32965:51482-51501 | None:intergenic | 55.0% | |
| ! | ATCGTTGATTGGCCCAGGTC+TGG | - | 32965:51098-51117 | None:intergenic | 55.0% |
| ! | CACCGACTGCGTACATCATC+TGG | - | 32965:51255-51274 | None:intergenic | 55.0% |
| ! | CGATAGAGAGCGATTAGCCC+AGG | + | 32965:51114-51133 | MS.gene60184:CDS | 55.0% |
| ! | CTGGAGTACCTGTTCTGCCA+TGG | - | 32965:51494-51513 | None:intergenic | 55.0% |
| ! | GGAGTACCTGTTCTGCCATG+GGG | - | 32965:51492-51511 | None:intergenic | 55.0% |
| CATCTGGTGGAGCCTCCGTT+CGG | - | 32965:51239-51258 | None:intergenic | 60.0% | |
| CATGCCTGCCACGGGGATAA+TGG | + | 32965:51289-51308 | MS.gene60184:CDS | 60.0% | |
| CCAGGTCTGGATGCATCCTC+CGG | - | 32965:51085-51104 | None:intergenic | 60.0% | |
| CCCAGGTCGTGGATCAGATC+CGG | + | 32965:51131-51150 | MS.gene60184:CDS | 60.0% | |
| CCGGATCTGATCCACGACCT+GGG | - | 32965:51134-51153 | None:intergenic | 60.0% | |
| CCGGCCACAGTCATACCGAA+CGG | + | 32965:51221-51240 | MS.gene60184:CDS | 60.0% | |
| CCGTTCGGTATGACTGTGGC+CGG | - | 32965:51224-51243 | None:intergenic | 60.0% | |
| CGGAGGATGCATCCAGACCT+GGG | + | 32965:51083-51102 | MS.gene60184:CDS | 60.0% | |
| GAGTTGTCATGCCTGCCACG+GGG | + | 32965:51282-51301 | MS.gene60184:CDS | 60.0% | |
| GCCACAGTCATACCGAACGG+AGG | + | 32965:51224-51243 | MS.gene60184:CDS | 60.0% | |
| GCCTCCGTTCGGTATGACTG+TGG | - | 32965:51228-51247 | None:intergenic | 60.0% | |
| GGTTGGGAGGGGAGGACTAA+AGG | - | 32965:51782-51801 | None:intergenic | 60.0% | |
| TCCGGATCTGATCCACGACC+TGG | - | 32965:51135-51154 | None:intergenic | 60.0% | |
| TGATGGGGCCCATGTTTCGG+TGG | + | 32965:51333-51352 | MS.gene60184:CDS | 60.0% | |
| TTCGGTATGACTGTGGCCGG+TGG | - | 32965:51221-51240 | None:intergenic | 60.0% | |
| ! | AGAGCGATTAGCCCAGGTCG+TGG | + | 32965:51120-51139 | MS.gene60184:CDS | 60.0% |
| ACCGCCATTATCCCCGTGGC+AGG | - | 32965:51296-51315 | None:intergenic | 65.0% | |
| CCGGAGGATGCATCCAGACC+TGG | + | 32965:51082-51101 | MS.gene60184:CDS | 65.0% | |
| GCTCACCGCCATTATCCCCG+TGG | - | 32965:51300-51319 | None:intergenic | 65.0% | |
| GGTATGACTGTGGCCGGTGG+TGG | - | 32965:51218-51237 | None:intergenic | 65.0% | |
| ! | GCCTGCCACGGGGATAATGG+CGG | + | 32965:51292-51311 | MS.gene60184:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32965 | gene | 49878 | 52664 | 49878 | ID=MS.gene60184 |
| 32965 | mRNA | 49878 | 52664 | 49878 | ID=MS.gene60184.t1;Parent=MS.gene60184 |
| 32965 | exon | 49878 | 50071 | 49878 | ID=MS.gene60184.t1.exon1;Parent=MS.gene60184.t1 |
| 32965 | CDS | 49878 | 50071 | 49878 | ID=cds.MS.gene60184.t1;Parent=MS.gene60184.t1 |
| 32965 | exon | 50232 | 50277 | 50232 | ID=MS.gene60184.t1.exon2;Parent=MS.gene60184.t1 |
| 32965 | CDS | 50232 | 50277 | 50232 | ID=cds.MS.gene60184.t1;Parent=MS.gene60184.t1 |
| 32965 | exon | 50382 | 50496 | 50382 | ID=MS.gene60184.t1.exon3;Parent=MS.gene60184.t1 |
| 32965 | CDS | 50382 | 50496 | 50382 | ID=cds.MS.gene60184.t1;Parent=MS.gene60184.t1 |
| 32965 | exon | 50577 | 50644 | 50577 | ID=MS.gene60184.t1.exon4;Parent=MS.gene60184.t1 |
| 32965 | CDS | 50577 | 50644 | 50577 | ID=cds.MS.gene60184.t1;Parent=MS.gene60184.t1 |
| 32965 | exon | 50860 | 51504 | 50860 | ID=MS.gene60184.t1.exon5;Parent=MS.gene60184.t1 |
| 32965 | CDS | 50860 | 51504 | 50860 | ID=cds.MS.gene60184.t1;Parent=MS.gene60184.t1 |
| 32965 | exon | 52041 | 52145 | 52041 | ID=MS.gene60184.t1.exon6;Parent=MS.gene60184.t1 |
| 32965 | CDS | 52041 | 52145 | 52041 | ID=cds.MS.gene60184.t1;Parent=MS.gene60184.t1 |
| 32965 | exon | 52302 | 52664 | 52302 | ID=MS.gene60184.t1.exon7;Parent=MS.gene60184.t1 |
| 32965 | CDS | 52302 | 52664 | 52302 | ID=cds.MS.gene60184.t1;Parent=MS.gene60184.t1 |
| Gene Sequence |
| Protein sequence |
