Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015275.t1 | XP_003611547.1 | 98.2 | 487 | 8 | 1 | 1 | 487 | 1 | 486 | 8.70E-264 | 919.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015275.t1 | Q9FHP1 | 47.4 | 498 | 221 | 9 | 1 | 482 | 2 | 474 | 6.6e-119 | 429.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015275.t1 | G7K2F4 | 98.2 | 487 | 8 | 1 | 1 | 487 | 1 | 486 | 6.3e-264 | 919.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015275 | MS.gene052926 | PPI |
| MS.gene015275 | MS.gene02630 | PPI |
| MS.gene93159 | MS.gene015275 | PPI |
| MS.gene33646 | MS.gene015275 | PPI |
| MS.gene015275 | MS.gene026670 | PPI |
| MS.gene013709 | MS.gene015275 | PPI |
| MS.gene31860 | MS.gene015275 | PPI |
| MS.gene015275 | MS.gene02506 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015275.t1 | MTR_5g015170 | 98.152 | 487 | 8 | 1 | 1 | 487 | 1 | 486 | 0.0 | 983 |
| MS.gene015275.t1 | MTR_4g097380 | 52.439 | 492 | 209 | 7 | 1 | 487 | 19 | 490 | 1.22e-176 | 505 |
| MS.gene015275.t1 | MTR_3g088885 | 46.437 | 435 | 209 | 11 | 1 | 431 | 1 | 415 | 3.68e-126 | 375 |
| MS.gene015275.t1 | MTR_7g022470 | 43.213 | 442 | 227 | 6 | 9 | 449 | 10 | 428 | 3.20e-122 | 365 |
| MS.gene015275.t1 | MTR_5g047260 | 45.824 | 443 | 210 | 8 | 9 | 450 | 17 | 430 | 3.24e-122 | 365 |
| MS.gene015275.t1 | MTR_1g029520 | 45.775 | 426 | 211 | 8 | 20 | 438 | 249 | 661 | 2.26e-119 | 365 |
| MS.gene015275.t1 | MTR_7g028050 | 43.192 | 426 | 211 | 7 | 9 | 429 | 1 | 400 | 1.98e-116 | 350 |
| MS.gene015275.t1 | MTR_5g011580 | 42.005 | 419 | 205 | 7 | 12 | 428 | 9 | 391 | 5.75e-106 | 323 |
| MS.gene015275.t1 | MTR_4g101950 | 41.587 | 416 | 207 | 6 | 12 | 426 | 9 | 389 | 8.57e-106 | 322 |
| MS.gene015275.t1 | MTR_5g047260 | 47.429 | 350 | 156 | 7 | 9 | 357 | 17 | 339 | 6.22e-97 | 297 |
| MS.gene015275.t1 | MTR_5g047260 | 47.022 | 319 | 142 | 6 | 9 | 326 | 17 | 309 | 1.94e-85 | 266 |
| MS.gene015275.t1 | MTR_7g028050 | 42.904 | 303 | 155 | 6 | 132 | 429 | 8 | 297 | 6.42e-78 | 247 |
| MS.gene015275.t1 | MTR_1g012740 | 43.137 | 102 | 51 | 2 | 293 | 394 | 54 | 148 | 1.77e-16 | 77.4 |
| MS.gene015275.t1 | MTR_1g012740 | 34.756 | 164 | 71 | 7 | 1 | 158 | 1 | 134 | 1.38e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015275.t1 | AT5G65890 | 48.178 | 494 | 223 | 9 | 1 | 482 | 2 | 474 | 1.34e-152 | 443 |
| MS.gene015275.t1 | AT5G65890 | 48.178 | 494 | 223 | 9 | 1 | 482 | 2 | 474 | 1.34e-152 | 443 |
| MS.gene015275.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.87e-133 | 392 |
| MS.gene015275.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.87e-133 | 392 |
| MS.gene015275.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.87e-133 | 392 |
| MS.gene015275.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.87e-133 | 392 |
| MS.gene015275.t1 | AT1G76990 | 45.721 | 444 | 216 | 5 | 1 | 440 | 1 | 423 | 5.87e-133 | 392 |
| MS.gene015275.t1 | AT5G65890 | 46.652 | 448 | 202 | 9 | 52 | 485 | 1 | 425 | 2.59e-127 | 377 |
| MS.gene015275.t1 | AT5G65890 | 46.652 | 448 | 202 | 9 | 52 | 485 | 1 | 425 | 2.59e-127 | 377 |
| MS.gene015275.t1 | AT5G25320 | 40.980 | 510 | 267 | 11 | 1 | 486 | 1 | 500 | 4.21e-124 | 371 |
| MS.gene015275.t1 | AT1G69040 | 43.111 | 450 | 230 | 8 | 5 | 452 | 3 | 428 | 3.11e-122 | 365 |
| MS.gene015275.t1 | AT1G69040 | 43.111 | 450 | 230 | 8 | 5 | 452 | 7 | 432 | 3.42e-122 | 365 |
| MS.gene015275.t1 | AT2G03730 | 44.965 | 427 | 217 | 6 | 5 | 429 | 7 | 417 | 4.33e-119 | 357 |
| MS.gene015275.t1 | AT2G03730 | 44.965 | 427 | 217 | 6 | 5 | 429 | 7 | 417 | 4.33e-119 | 357 |
| MS.gene015275.t1 | AT5G25320 | 40.764 | 471 | 247 | 10 | 38 | 486 | 1 | 461 | 1.08e-114 | 346 |
| MS.gene015275.t1 | AT3G01990 | 44.869 | 419 | 205 | 6 | 10 | 428 | 17 | 409 | 3.19e-114 | 344 |
| MS.gene015275.t1 | AT3G01990 | 44.869 | 419 | 205 | 6 | 10 | 428 | 17 | 409 | 3.19e-114 | 344 |
| MS.gene015275.t1 | AT3G01990 | 44.869 | 419 | 205 | 6 | 10 | 428 | 3 | 395 | 4.72e-114 | 343 |
| MS.gene015275.t1 | AT3G01990 | 44.869 | 419 | 205 | 6 | 10 | 428 | 3 | 395 | 4.72e-114 | 343 |
| MS.gene015275.t1 | AT3G01990 | 44.524 | 420 | 205 | 6 | 10 | 428 | 17 | 409 | 5.20e-114 | 343 |
| MS.gene015275.t1 | AT3G01990 | 44.524 | 420 | 205 | 6 | 10 | 428 | 3 | 395 | 5.44e-114 | 343 |
| MS.gene015275.t1 | AT4G22780 | 44.231 | 416 | 196 | 6 | 12 | 426 | 9 | 389 | 1.64e-108 | 330 |
| MS.gene015275.t1 | AT4G22780 | 44.231 | 416 | 196 | 6 | 12 | 426 | 9 | 389 | 1.64e-108 | 330 |
| MS.gene015275.t1 | AT1G12420 | 41.928 | 415 | 209 | 5 | 12 | 426 | 9 | 391 | 1.09e-103 | 317 |
| MS.gene015275.t1 | AT5G65890 | 45.753 | 365 | 171 | 7 | 133 | 485 | 14 | 363 | 6.92e-99 | 302 |
| MS.gene015275.t1 | AT5G25320 | 43.799 | 379 | 182 | 9 | 1 | 356 | 1 | 371 | 1.04e-97 | 300 |
| MS.gene015275.t1 | AT3G01990 | 44.828 | 348 | 166 | 6 | 10 | 357 | 17 | 338 | 7.46e-93 | 286 |
| MS.gene015275.t1 | AT3G01990 | 44.568 | 359 | 167 | 7 | 10 | 362 | 17 | 349 | 1.00e-92 | 286 |
| MS.gene015275.t1 | AT3G01990 | 44.568 | 359 | 167 | 7 | 10 | 362 | 3 | 335 | 1.45e-92 | 285 |
| MS.gene015275.t1 | AT3G01990 | 44.586 | 314 | 147 | 6 | 10 | 322 | 17 | 304 | 1.46e-79 | 251 |
| MS.gene015275.t1 | AT3G01990 | 43.949 | 314 | 149 | 5 | 10 | 322 | 3 | 290 | 2.02e-79 | 250 |
| MS.gene015275.t1 | AT1G12420 | 39.031 | 351 | 182 | 5 | 76 | 426 | 1 | 319 | 8.11e-77 | 245 |
Find 132 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACAATTCCACTATATT+TGG | 0.129234 | 5.4:-8870872 | None:intergenic |
| ATGTTATGGTGCAGGGTTTA+AGG | 0.149741 | 5.4:+8870690 | MS.gene015275:intron |
| CTCAGATGGTGGATGGTTTA+TGG | 0.175362 | 5.4:+8868489 | MS.gene015275:CDS |
| TAGAGAATCTCACGATTTAA+TGG | 0.287853 | 5.4:-8871080 | None:intergenic |
| CAACCGTCTTGGGTCCCTAA+TGG | 0.292246 | 5.4:-8869992 | None:intergenic |
| GTTGATAGTGCAAACAAGTA+TGG | 0.292710 | 5.4:+8868400 | MS.gene015275:CDS |
| CATCCAAACCTGGGCCCATT+AGG | 0.303226 | 5.4:+8869977 | MS.gene015275:CDS |
| CTGATCGGCTATGGATTTCT+TGG | 0.307288 | 5.4:-8870364 | None:intergenic |
| ACTCGTGTGATTCGTGAAAA+TGG | 0.308494 | 5.4:+8870758 | MS.gene015275:CDS |
| CAGTAGCGGCGATCACAAAA+AGG | 0.321891 | 5.4:+8870188 | MS.gene015275:CDS |
| GTCCCTAATGGGCCCAGGTT+TGG | 0.329663 | 5.4:-8869980 | None:intergenic |
| TATGGATTTCTTGGAACTAA+TGG | 0.329739 | 5.4:-8870355 | None:intergenic |
| TCTCCAGCTGTTCCTTTACC+TGG | 0.332514 | 5.4:-8870017 | None:intergenic |
| AGAGAATCTCACGATTTAAT+GGG | 0.332754 | 5.4:-8871079 | None:intergenic |
| CCCTGTCGGCATACATTAAC+TGG | 0.338582 | 5.4:-8870134 | None:intergenic |
| AACCGTCTTGGGTCCCTAAT+GGG | 0.339779 | 5.4:-8869991 | None:intergenic |
| TTTACCTGGGCCAACCGTCT+TGG | 0.354606 | 5.4:-8870003 | None:intergenic |
| CGATACAGTGTGTGTACTTA+GGG | 0.366686 | 5.4:+8870305 | MS.gene015275:CDS |
| TTACCTGGGCCAACCGTCTT+GGG | 0.381992 | 5.4:-8870002 | None:intergenic |
| ATTTGCACTGAAAATAAAAC+AGG | 0.402096 | 5.4:+8870719 | MS.gene015275:CDS |
| GATACGCCAAGACTTTCTAT+TGG | 0.402236 | 5.4:+8871010 | MS.gene015275:CDS |
| TCTTGCAGGAGTACTATATA+AGG | 0.406529 | 5.4:+8870486 | MS.gene015275:intron |
| GGGGTATTGGGTGGTGAACT+TGG | 0.414673 | 5.4:+8870254 | MS.gene015275:CDS |
| CAAGAAATCCATAGCCGATC+AGG | 0.418699 | 5.4:+8870365 | MS.gene015275:CDS |
| TGTTATGGTGCAGGGTTTAA+GGG | 0.420837 | 5.4:+8870691 | MS.gene015275:intron |
| TCGATACAGTGTGTGTACTT+AGG | 0.426194 | 5.4:+8870304 | MS.gene015275:CDS |
| GCAGGCTACCCTTCCATTGT+GGG | 0.435839 | 5.4:-8869935 | None:intergenic |
| TTCTATGTCAGAAATCCTTC+AGG | 0.436835 | 5.4:+8870836 | MS.gene015275:CDS |
| ATCCAAACCTGGGCCCATTA+GGG | 0.444278 | 5.4:+8869978 | MS.gene015275:CDS |
| GGTGGTGAACTTGGTGTGTA+GGG | 0.445141 | 5.4:+8870263 | MS.gene015275:CDS |
| TCGTTCGGTGTGTGTGCGCC+CGG | 0.457740 | 5.4:-8870103 | None:intergenic |
| TCAATACCAAGGGTTGAGAT+TGG | 0.463256 | 5.4:+8870785 | MS.gene015275:CDS |
| GTATGCCGACAGGGACTATG+AGG | 0.470907 | 5.4:+8870143 | MS.gene015275:CDS |
| GTGAATATTCTGCGCAGCCT+TGG | 0.471293 | 5.4:-8869771 | None:intergenic |
| GGGTGGTGAACTTGGTGTGT+AGG | 0.481307 | 5.4:+8870262 | MS.gene015275:CDS |
| CCTTCTCAATTTGGTGCATG+AGG | 0.482265 | 5.4:-8868795 | None:intergenic |
| CCTTTCTCCCTTCTCACCAC+GGG | 0.483438 | 5.4:-8870052 | None:intergenic |
| GTAGAAGAGGCATCCAAACC+TGG | 0.484993 | 5.4:+8869967 | MS.gene015275:CDS |
| AGAAGTGAAACCAAATATAG+TGG | 0.487558 | 5.4:+8870862 | MS.gene015275:CDS |
| ATGAAGTACCTGATCGGCTA+TGG | 0.488476 | 5.4:-8870373 | None:intergenic |
| CGCATTCCAATCTCAACCCT+TGG | 0.489030 | 5.4:-8870791 | None:intergenic |
| CTTGGGTCCCTAATGGGCCC+AGG | 0.491215 | 5.4:-8869985 | None:intergenic |
| ATGTGCCACAAGAGCAAAAG+AGG | 0.493335 | 5.4:+8869726 | MS.gene015275:CDS |
| CTCCAGCTGTTCCTTTACCT+GGG | 0.494258 | 5.4:-8870016 | None:intergenic |
| CTGCTGATATTTCTGATAGT+AGG | 0.497761 | 5.4:-8869867 | None:intergenic |
| CCCGTGGTGAGAAGGGAGAA+AGG | 0.498977 | 5.4:+8870052 | MS.gene015275:CDS |
| AAGACGGTTGGCCCAGGTAA+AGG | 0.499864 | 5.4:+8870005 | MS.gene015275:CDS |
| TAACTGGTGAAGCCGTCGTT+CGG | 0.499936 | 5.4:-8870118 | None:intergenic |
| GATATTTCTGATAGTAGGCC+TGG | 0.500326 | 5.4:-8869862 | None:intergenic |
| TCCTTTCTCCCTTCTCACCA+CGG | 0.500399 | 5.4:-8870053 | None:intergenic |
| GGTTTCACTTCTTGACCTGA+AGG | 0.505004 | 5.4:-8870851 | None:intergenic |
| GAGGGCTGTCGCGCTTGTCA+TGG | 0.505888 | 5.4:+8870162 | MS.gene015275:CDS |
| CTCACGATTTAATGGGGCTA+AGG | 0.506228 | 5.4:-8871072 | None:intergenic |
| AAAACAAAGTGTTACCTGGC+TGG | 0.507971 | 5.4:-8867562 | None:intergenic |
| GGCCCAGGTAAAGGAACAGC+TGG | 0.508319 | 5.4:+8870014 | MS.gene015275:CDS |
| AAGTCATACATTTCCTCAGA+TGG | 0.511270 | 5.4:+8868475 | MS.gene015275:CDS |
| CTCAAAACAAATTGTGTCAA+AGG | 0.511876 | 5.4:+8869804 | MS.gene015275:CDS |
| AGGTTGAGAAACTTTGCTAC+CGG | 0.516920 | 5.4:+8870084 | MS.gene015275:CDS |
| ATCTGAGGAAATGTATGACT+TGG | 0.517740 | 5.4:-8868473 | None:intergenic |
| ATCAGAAATATCAGCAGTGT+TGG | 0.520345 | 5.4:+8869873 | MS.gene015275:CDS |
| CTCTTCTACGTAAAGAATGC+AGG | 0.520671 | 5.4:-8869953 | None:intergenic |
| ACTATTACTCGACGAGGAAG+AGG | 0.523834 | 5.4:-8870969 | None:intergenic |
| TTGCTTCCAATAGAAAGTCT+TGG | 0.523994 | 5.4:-8871016 | None:intergenic |
| CGGCATGGACCCACAATGGA+AGG | 0.526482 | 5.4:+8869926 | MS.gene015275:CDS |
| ACCAGTTAATGTATGCCGAC+AGG | 0.528524 | 5.4:+8870133 | MS.gene015275:CDS |
| ACATTTCCTCAGATGGTGGA+TGG | 0.530471 | 5.4:+8868482 | MS.gene015275:CDS |
| TTTCTATTGGAAGCAAGCTA+TGG | 0.532707 | 5.4:+8871023 | MS.gene015275:CDS |
| TGCAGGCTACCCTTCCATTG+TGG | 0.532960 | 5.4:-8869936 | None:intergenic |
| AGCAAGCTATGGTCTCAGAT+AGG | 0.533710 | 5.4:+8871034 | MS.gene015275:CDS |
| CTATTAGTAGATGCAAGGAC+AGG | 0.535659 | 5.4:+8870232 | MS.gene015275:CDS |
| TAGTGAAAATAGTAGTATAG+AGG | 0.539821 | 5.4:+8870988 | MS.gene015275:CDS |
| TTGATAGTGCAAACAAGTAT+GGG | 0.540593 | 5.4:+8868401 | MS.gene015275:CDS |
| CTGCATTCTTTACGTAGAAG+AGG | 0.548254 | 5.4:+8869954 | MS.gene015275:CDS |
| TATTAGTAGATGCAAGGACA+GGG | 0.549071 | 5.4:+8870233 | MS.gene015275:CDS |
| TGCCAGCTTGATCCGTGACG+TGG | 0.553021 | 5.4:-8868753 | None:intergenic |
| GGACCCAAGACGGTTGGCCC+AGG | 0.553645 | 5.4:+8869999 | MS.gene015275:CDS |
| TGTGGTGACCCGTGGTGAGA+AGG | 0.555690 | 5.4:+8870044 | MS.gene015275:CDS |
| CTGGCAAGAAACTCACTGAC+AGG | 0.555755 | 5.4:+8868770 | MS.gene015275:CDS |
| GGTTGAGAAACTTTGCTACC+GGG | 0.558145 | 5.4:+8870085 | MS.gene015275:CDS |
| CCAGTTAATGTATGCCGACA+GGG | 0.559631 | 5.4:+8870134 | MS.gene015275:CDS |
| GTCAAAGGAGAACACAGCAT+TGG | 0.563927 | 5.4:+8869819 | MS.gene015275:CDS |
| CTGAAAGATTACATCCAGCC+AGG | 0.565709 | 5.4:+8867548 | MS.gene015275:CDS |
| ACACAGCATTGGAGATGAGT+GGG | 0.569581 | 5.4:+8869830 | MS.gene015275:CDS |
| GATATTATTAGAGATGGTAC+AGG | 0.574494 | 5.4:+8868423 | MS.gene015275:CDS |
| GTGATCAGTAACTACATCTA+CGG | 0.580956 | 5.4:-8870912 | None:intergenic |
| CTCTCAGAACCCAAAGTGAG+AGG | 0.582014 | 5.4:+8870528 | MS.gene015275:CDS |
| GGATTTCTTGGAACTAATGG+CGG | 0.585123 | 5.4:-8870352 | None:intergenic |
| TCTCAGAACCCAAAGTGAGA+GGG | 0.585577 | 5.4:+8870529 | MS.gene015275:CDS |
| CATAAACCATCCACCATCTG+AGG | 0.586219 | 5.4:-8868488 | None:intergenic |
| CATTAGGGACCCAAGACGGT+TGG | 0.588293 | 5.4:+8869993 | MS.gene015275:CDS |
| GGCGCACACACACCGAACGA+CGG | 0.589313 | 5.4:+8870106 | MS.gene015275:CDS |
| TATATAAGGCACAAGTGGAA+TGG | 0.589958 | 5.4:+8870500 | MS.gene015275:CDS |
| AGGGAGAAAGGAACAATGTG+AGG | 0.594047 | 5.4:+8870064 | MS.gene015275:CDS |
| ATGTCACCTCAGCAACGGCA+TGG | 0.596380 | 5.4:+8869911 | MS.gene015275:CDS |
| CCTCATGCACCAAATTGAGA+AGG | 0.597211 | 5.4:+8868795 | MS.gene015275:CDS |
| CTGCAATGTCACCTCAGCAA+CGG | 0.599321 | 5.4:+8869906 | MS.gene015275:CDS |
| GTGGTGACCCGTGGTGAGAA+GGG | 0.599795 | 5.4:+8870045 | MS.gene015275:CDS |
| TTCCACGTCACGGATCAAGC+TGG | 0.601458 | 5.4:+8868751 | MS.gene015275:CDS |
| CAATGCAGTGTTCCACGTCA+CGG | 0.606463 | 5.4:+8868741 | MS.gene015275:intron |
| GTATGGGATATTATTAGAGA+TGG | 0.607389 | 5.4:+8868417 | MS.gene015275:CDS |
| AGTACTATATAAGGCACAAG+TGG | 0.608265 | 5.4:+8870495 | MS.gene015275:CDS |
| AAATGGACTATCAATACCAA+GGG | 0.608641 | 5.4:+8870775 | MS.gene015275:CDS |
| GATGATGAAGCAGAACTCCA+AGG | 0.609526 | 5.4:+8869754 | MS.gene015275:CDS |
| TAAAGACTGTACTGTTGTGA+AGG | 0.613082 | 5.4:+8867688 | MS.gene015275:CDS |
| TGTGTCTATTAGTAGATGCA+AGG | 0.614395 | 5.4:+8870227 | MS.gene015275:CDS |
| GCAACGGCATGGACCCACAA+TGG | 0.615665 | 5.4:+8869922 | MS.gene015275:CDS |
| AAAATGGACTATCAATACCA+AGG | 0.618601 | 5.4:+8870774 | MS.gene015275:CDS |
| TCATACATTTCCTCAGATGG+TGG | 0.619116 | 5.4:+8868478 | MS.gene015275:CDS |
| AACACAGCATTGGAGATGAG+TGG | 0.622791 | 5.4:+8869829 | MS.gene015275:CDS |
| TAGAAGAGGCATCCAAACCT+GGG | 0.631343 | 5.4:+8869968 | MS.gene015275:CDS |
| GAGAATCTCACGATTTAATG+GGG | 0.634921 | 5.4:-8871078 | None:intergenic |
| AGCATTGGAGATGAGTGGGA+TGG | 0.641022 | 5.4:+8869834 | MS.gene015275:CDS |
| AGGGTTGAGATTGGAATGCG+AGG | 0.641150 | 5.4:+8870794 | MS.gene015275:CDS |
| GGCCCATTAGGGACCCAAGA+CGG | 0.641597 | 5.4:+8869989 | MS.gene015275:CDS |
| GATGGTGGATGGTTTATGGA+CGG | 0.644975 | 5.4:+8868493 | MS.gene015275:CDS |
| TTAGTAGATGCAAGGACAGG+GGG | 0.646835 | 5.4:+8870235 | MS.gene015275:CDS |
| GGCATGGACCCACAATGGAA+GGG | 0.647070 | 5.4:+8869927 | MS.gene015275:CDS |
| ATGAGTGGGATGGATAGACC+AGG | 0.647189 | 5.4:+8869844 | MS.gene015275:CDS |
| GAGAGTGTTGTGGTGACCCG+TGG | 0.647944 | 5.4:+8870036 | MS.gene015275:CDS |
| GTGGGTCCATGCCGTTGCTG+AGG | 0.652331 | 5.4:-8869917 | None:intergenic |
| GTGACGATGAAGTACCTGAT+CGG | 0.654044 | 5.4:-8870379 | None:intergenic |
| ACAGCCCTCATAGTCCCTGT+CGG | 0.660415 | 5.4:-8870148 | None:intergenic |
| TGGAATGCGAGGAGATGATG+TGG | 0.665858 | 5.4:+8870805 | MS.gene015275:CDS |
| TATGCCGACAGGGACTATGA+GGG | 0.670406 | 5.4:+8870144 | MS.gene015275:CDS |
| ATTAGTAGATGCAAGGACAG+GGG | 0.684726 | 5.4:+8870234 | MS.gene015275:CDS |
| GATGTTCGAGAAAGCTTACG+AGG | 0.684804 | 5.4:-8870941 | None:intergenic |
| GCTTGTCATGGAGACAGTAG+CGG | 0.685049 | 5.4:+8870174 | MS.gene015275:CDS |
| ATGCGAGGAGATGATGTGGT+AGG | 0.689656 | 5.4:+8870809 | MS.gene015275:CDS |
| GGAACAGCTGGAGAGTGTTG+TGG | 0.690059 | 5.4:+8870026 | MS.gene015275:CDS |
| TGTATGACTTGGAAATGATG+AGG | 0.695973 | 5.4:-8868462 | None:intergenic |
| TTGTTGAGACAAGAGTGTGG+TGG | 0.733636 | 5.4:+8870887 | MS.gene015275:CDS |
| GAATTGTTGAGACAAGAGTG+TGG | 0.752168 | 5.4:+8870884 | MS.gene015275:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATGTAACAAATATT+TGG | - | chr5.4:8869066-8869085 | None:intergenic | 10.0% |
| !! | TACATAATTAATTAACTAAT+CGG | - | chr5.4:8867601-8867620 | None:intergenic | 10.0% |
| !! | TTCATAAAATATAACAAAAA+AGG | + | chr5.4:8867877-8867896 | MS.gene015275:intron | 10.0% |
| !!! | TATTTTTATTTCACAAAAAA+TGG | - | chr5.4:8869178-8869197 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTTATAAGT+AGG | - | chr5.4:8868254-8868273 | None:intergenic | 10.0% |
| !! | AATAATAAGGATACATAAAA+AGG | - | chr5.4:8870637-8870656 | None:intergenic | 15.0% |
| !! | ATTAGTATTAAAACTAAAGT+CGG | + | chr5.4:8867850-8867869 | MS.gene015275:intron | 15.0% |
| !! | TAAATTTCTATATACAAAAG+AGG | - | chr5.4:8867793-8867812 | None:intergenic | 15.0% |
| !!! | ATATAGAAATTTAATTTAGC+TGG | + | chr5.4:8867800-8867819 | MS.gene015275:intron | 15.0% |
| !!! | GTACAAAATATTTTATTGAT+GGG | - | chr5.4:8869465-8869484 | None:intergenic | 15.0% |
| !!! | GTAGAAAATATTTTATTGAT+AGG | - | chr5.4:8868835-8868854 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCATAAAATTAT+CGG | + | chr5.4:8869577-8869596 | MS.gene015275:intron | 15.0% |
| !!! | TCATTTTCTTTGATAATTAT+CGG | + | chr5.4:8868947-8868966 | MS.gene015275:intron | 15.0% |
| !!! | TTTAGTTTTAATACTAATAC+AGG | - | chr5.4:8867848-8867867 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGTTGCTAAAG+AGG | + | chr5.4:8868265-8868284 | MS.gene015275:intron | 20.0% |
| !! | AAAATTAAGTCAAAATGCTA+TGG | - | chr5.4:8868315-8868334 | None:intergenic | 20.0% |
| !! | AAATATGAAGAAAAAAGAGA+TGG | + | chr5.4:8869193-8869212 | MS.gene015275:intron | 20.0% |
| !! | ATGGTATTTATATTAGATCT+GGG | + | chr5.4:8869303-8869322 | MS.gene015275:intron | 20.0% |
| !! | ATTATCATTATCATGGTTTA+TGG | - | chr5.4:8868575-8868594 | None:intergenic | 20.0% |
| !! | TATGGTATTTATATTAGATC+TGG | + | chr5.4:8869302-8869321 | MS.gene015275:intron | 20.0% |
| !! | TTGATCAATTATCATTATCA+TGG | - | chr5.4:8868582-8868601 | None:intergenic | 20.0% |
| !!! | GGTACAAAATATTTTATTGA+TGG | - | chr5.4:8869466-8869485 | None:intergenic | 20.0% |
| !!! | GTAATTAATTTTCTGCTAAT+TGG | + | chr5.4:8867638-8867657 | MS.gene015275:intron | 20.0% |
| !!! | TTATTTTCTCAAATTGCTAT+TGG | - | chr5.4:8867974-8867993 | None:intergenic | 20.0% |
| ! | AAAAGGAAAATCTTAATGCT+AGG | - | chr5.4:8870620-8870639 | None:intergenic | 25.0% |
| ! | ACAAAAAAACCTTCTCAATT+TGG | - | chr5.4:8868807-8868826 | None:intergenic | 25.0% |
| ! | ATACAGGAAAACAATGTTAA+AGG | - | chr5.4:8868548-8868567 | None:intergenic | 25.0% |
| ! | ATTTGCACTGAAAATAAAAC+AGG | + | chr5.4:8870719-8870738 | MS.gene015275:CDS | 25.0% |
| ! | CTAACAAGATCTTAAACATA+AGG | - | chr5.4:8868006-8868025 | None:intergenic | 25.0% |
| ! | GATATCAGCAAAAAAATTAG+TGG | + | chr5.4:8868674-8868693 | MS.gene015275:intron | 25.0% |
| ! | TACACATTCAATCATAAGTA+TGG | - | chr5.4:8869487-8869506 | None:intergenic | 25.0% |
| ! | TAGTGAAAATAGTAGTATAG+AGG | + | chr5.4:8870988-8871007 | MS.gene015275:CDS | 25.0% |
| ! | TGCATTATGGCATAATAATA+AGG | - | chr5.4:8870650-8870669 | None:intergenic | 25.0% |
| ! | TGGATCAATGTAATTAATGA+CGG | - | chr5.4:8870464-8870483 | None:intergenic | 25.0% |
| ! | TGGTATTTATATTAGATCTG+GGG | + | chr5.4:8869304-8869323 | MS.gene015275:intron | 25.0% |
| ! | TTCTGATAAAAAAACGTGTT+TGG | - | chr5.4:8868194-8868213 | None:intergenic | 25.0% |
| !! | CTTATGTTTAAGATCTTGTT+AGG | + | chr5.4:8868004-8868023 | MS.gene015275:intron | 25.0% |
| !! | TTTTCAAACAAGATGATATG+TGG | + | chr5.4:8869093-8869112 | MS.gene015275:intron | 25.0% |
| !!! | ATCTTAATGCTAGGTTTTAT+AGG | - | chr5.4:8870611-8870630 | None:intergenic | 25.0% |
| !!! | GTGGTTTTTTATGTATGTTA+TGG | + | chr5.4:8870676-8870695 | MS.gene015275:intron | 25.0% |
| ACAGATGTGTTTATGTTCAT+AGG | + | chr5.4:8869413-8869432 | MS.gene015275:intron | 30.0% | |
| ACTGTATCGAAAAACAACTT+GGG | - | chr5.4:8870294-8870313 | None:intergenic | 30.0% | |
| AGAAGTGAAACCAAATATAG+TGG | + | chr5.4:8870862-8870881 | MS.gene015275:CDS | 30.0% | |
| ATCTTGACAAAATATTTGGG+GGG | + | chr5.4:8869038-8869057 | MS.gene015275:intron | 30.0% | |
| ATGAAGAAAAAAGAGATGGA+AGG | + | chr5.4:8869197-8869216 | MS.gene015275:intron | 30.0% | |
| CACATATTCAATCAGAAGTA+TGG | - | chr5.4:8868857-8868876 | None:intergenic | 30.0% | |
| CACTACAAAACAAGACATAA+AGG | - | chr5.4:8867743-8867762 | None:intergenic | 30.0% | |
| CAGCAAAAAAATTAGTGGTT+CGG | + | chr5.4:8868679-8868698 | MS.gene015275:intron | 30.0% | |
| CATGGTTTATGGAAAAATAC+AGG | - | chr5.4:8868564-8868583 | None:intergenic | 30.0% | |
| CGGATCTTGACAAAATATTT+GGG | + | chr5.4:8869035-8869054 | MS.gene015275:intron | 30.0% | |
| CTATGGTTACTAGTAACTTA+TGG | - | chr5.4:8868298-8868317 | None:intergenic | 30.0% | |
| CTCAAAACAAATTGTGTCAA+AGG | + | chr5.4:8869804-8869823 | MS.gene015275:CDS | 30.0% | |
| CTCAACAATTCCACTATATT+TGG | - | chr5.4:8870875-8870894 | None:intergenic | 30.0% | |
| CTGATAGTATCTGTGTAATA+TGG | + | chr5.4:8869284-8869303 | MS.gene015275:intron | 30.0% | |
| CTTAATAGAGTTACTTGTGT+TGG | + | chr5.4:8868135-8868154 | MS.gene015275:intron | 30.0% | |
| GATATTATTAGAGATGGTAC+AGG | + | chr5.4:8868423-8868442 | MS.gene015275:CDS | 30.0% | |
| GATCTTGACAAAATATTTGG+GGG | + | chr5.4:8869037-8869056 | MS.gene015275:intron | 30.0% | |
| GGATCTTGACAAAATATTTG+GGG | + | chr5.4:8869036-8869055 | MS.gene015275:intron | 30.0% | |
| GGTATTTATATTAGATCTGG+GGG | + | chr5.4:8869305-8869324 | MS.gene015275:intron | 30.0% | |
| GTATGGGATATTATTAGAGA+TGG | + | chr5.4:8868417-8868436 | MS.gene015275:CDS | 30.0% | |
| GTATTTATATTAGATCTGGG+GGG | + | chr5.4:8869306-8869325 | MS.gene015275:intron | 30.0% | |
| TATGGATTTCTTGGAACTAA+TGG | - | chr5.4:8870358-8870377 | None:intergenic | 30.0% | |
| TGAAGAAAAAAGAGATGGAA+GGG | + | chr5.4:8869198-8869217 | MS.gene015275:intron | 30.0% | |
| TTCTCTATTGTTTCAATCAG+TGG | + | chr5.4:8869012-8869031 | MS.gene015275:intron | 30.0% | |
| TTTATGTATGTTATGGTGCA+GGG | + | chr5.4:8870683-8870702 | MS.gene015275:intron | 30.0% | |
| ! | ACATAAAACAAAGTGTTACC+TGG | - | chr5.4:8867569-8867588 | None:intergenic | 30.0% |
| ! | GCTGATATCATATGATAATG+TGG | - | chr5.4:8868663-8868682 | None:intergenic | 30.0% |
| ! | TAATTTTCTGCTAATTGGCA+GGG | + | chr5.4:8867643-8867662 | MS.gene015275:intron | 30.0% |
| ! | TTAATTTTCTGCTAATTGGC+AGG | + | chr5.4:8867642-8867661 | MS.gene015275:intron | 30.0% |
| ! | TTTTATGTATGTTATGGTGC+AGG | + | chr5.4:8870682-8870701 | MS.gene015275:intron | 30.0% |
| !! | AAAATGGACTATCAATACCA+AGG | + | chr5.4:8870774-8870793 | MS.gene015275:CDS | 30.0% |
| !! | AAATGGACTATCAATACCAA+GGG | + | chr5.4:8870775-8870794 | MS.gene015275:CDS | 30.0% |
| !! | TGAAGTTGTTTTGCGTTATT+TGG | - | chr5.4:8869237-8869256 | None:intergenic | 30.0% |
| !! | TTGATAGTGCAAACAAGTAT+GGG | + | chr5.4:8868401-8868420 | MS.gene015275:CDS | 30.0% |
| !!! | TCGGTTTTAATGTGTCATTT+TGG | + | chr5.4:8869596-8869615 | MS.gene015275:intron | 30.0% |
| !!! | TCGGTTTTTATGTGTCATTT+CGG | + | chr5.4:8868966-8868985 | MS.gene015275:intron | 30.0% |
| AAGTCATACATTTCCTCAGA+TGG | + | chr5.4:8868475-8868494 | MS.gene015275:CDS | 35.0% | |
| ACAAAATCACAATGGAACAG+AGG | - | chr5.4:8868050-8868069 | None:intergenic | 35.0% | |
| ACACCAGTTTAGAAATTGGA+AGG | + | chr5.4:8867902-8867921 | MS.gene015275:intron | 35.0% | |
| AGTACTATATAAGGCACAAG+TGG | + | chr5.4:8870495-8870514 | MS.gene015275:CDS | 35.0% | |
| AGTGTTTATCCTTCTTAGAG+TGG | + | chr5.4:8868518-8868537 | MS.gene015275:intron | 35.0% | |
| ATCAGAAATATCAGCAGTGT+TGG | + | chr5.4:8869873-8869892 | MS.gene015275:CDS | 35.0% | |
| ATCTGAGGAAATGTATGACT+TGG | - | chr5.4:8868476-8868495 | None:intergenic | 35.0% | |
| ATTATGCCATAATGCACTGA+TGG | + | chr5.4:8870654-8870673 | MS.gene015275:intron | 35.0% | |
| CACTATCAACCTGTAAATGT+CGG | - | chr5.4:8868390-8868409 | None:intergenic | 35.0% | |
| CACTGTATCGAAAAACAACT+TGG | - | chr5.4:8870295-8870314 | None:intergenic | 35.0% | |
| CTTCATATGATTGAAACCAG+TGG | - | chr5.4:8869366-8869385 | None:intergenic | 35.0% | |
| GCGGATCTTGACAAAATATT+TGG | + | chr5.4:8869034-8869053 | MS.gene015275:intron | 35.0% | |
| GTGATCAGTAACTACATCTA+CGG | - | chr5.4:8870915-8870934 | None:intergenic | 35.0% | |
| TAAAGACTGTACTGTTGTGA+AGG | + | chr5.4:8867688-8867707 | MS.gene015275:CDS | 35.0% | |
| TATATAAGGCACAAGTGGAA+TGG | + | chr5.4:8870500-8870519 | MS.gene015275:CDS | 35.0% | |
| TATCGAAAAACAACTTGGGA+CGG | - | chr5.4:8870290-8870309 | None:intergenic | 35.0% | |
| TATTAGTAGATGCAAGGACA+GGG | + | chr5.4:8870233-8870252 | MS.gene015275:CDS | 35.0% | |
| TCTATTGTTTCAATCAGTGG+CGG | + | chr5.4:8869015-8869034 | MS.gene015275:intron | 35.0% | |
| TGTGTCTATTAGTAGATGCA+AGG | + | chr5.4:8870227-8870246 | MS.gene015275:CDS | 35.0% | |
| TTCTATGTCAGAAATCCTTC+AGG | + | chr5.4:8870836-8870855 | MS.gene015275:CDS | 35.0% | |
| TTGCTTCCAATAGAAAGTCT+TGG | - | chr5.4:8871019-8871038 | None:intergenic | 35.0% | |
| TTTCTATTGGAAGCAAGCTA+TGG | + | chr5.4:8871023-8871042 | MS.gene015275:CDS | 35.0% | |
| ! | AAAGGAATTCCACTCTAAGA+AGG | - | chr5.4:8868530-8868549 | None:intergenic | 35.0% |
| ! | ATTTTCACTATTACTCGACG+AGG | - | chr5.4:8870978-8870997 | None:intergenic | 35.0% |
| ! | CTGCTGATATTTCTGATAGT+AGG | - | chr5.4:8869870-8869889 | None:intergenic | 35.0% |
| ! | TGTATGACTTGGAAATGATG+AGG | - | chr5.4:8868465-8868484 | None:intergenic | 35.0% |
| ! | TGTGTTGGTATTGTGTTAAG+AGG | + | chr5.4:8868150-8868169 | MS.gene015275:intron | 35.0% |
| !! | AGATGTGTGTTTTTGTTCAC+AGG | + | chr5.4:8869699-8869718 | MS.gene015275:intron | 35.0% |
| !! | ATTGTGTTAAGAGGTATCAG+AGG | + | chr5.4:8868159-8868178 | MS.gene015275:intron | 35.0% |
| !! | GTTGATAGTGCAAACAAGTA+TGG | + | chr5.4:8868400-8868419 | MS.gene015275:CDS | 35.0% |
| !! | TCTTGCAGGAGTACTATATA+AGG | + | chr5.4:8870486-8870505 | MS.gene015275:intron | 35.0% |
| !! | TTTGGTGTTTATGTCGTGTT+CGG | + | chr5.4:8869614-8869633 | MS.gene015275:intron | 35.0% |
| AAACCACCATCAGTGCATTA+TGG | - | chr5.4:8870663-8870682 | None:intergenic | 40.0% | |
| ACTCGTGTGATTCGTGAAAA+TGG | + | chr5.4:8870758-8870777 | MS.gene015275:CDS | 40.0% | |
| AGGTTGAGAAACTTTGCTAC+CGG | + | chr5.4:8870084-8870103 | MS.gene015275:CDS | 40.0% | |
| ATGTTATGGTGCAGGGTTTA+AGG | + | chr5.4:8870690-8870709 | MS.gene015275:intron | 40.0% | |
| ATTAGTAGATGCAAGGACAG+GGG | + | chr5.4:8870234-8870253 | MS.gene015275:CDS | 40.0% | |
| CAAGATGATATGTGGTGTGT+TGG | + | chr5.4:8869101-8869120 | MS.gene015275:intron | 40.0% | |
| CAGAGGCTACAAAATCACAA+TGG | - | chr5.4:8868033-8868052 | None:intergenic | 40.0% | |
| CATATGATTGAAACCAGTGG+CGG | - | chr5.4:8869363-8869382 | None:intergenic | 40.0% | |
| CGATACAGTGTGTGTACTTA+GGG | + | chr5.4:8870305-8870324 | MS.gene015275:CDS | 40.0% | |
| CTATTAGTAGATGCAAGGAC+AGG | + | chr5.4:8870232-8870251 | MS.gene015275:CDS | 40.0% | |
| CTCTTCTACGTAAAGAATGC+AGG | - | chr5.4:8869956-8869975 | None:intergenic | 40.0% | |
| CTGCATTCTTTACGTAGAAG+AGG | + | chr5.4:8869954-8869973 | MS.gene015275:CDS | 40.0% | |
| GAATTGTTGAGACAAGAGTG+TGG | + | chr5.4:8870884-8870903 | MS.gene015275:CDS | 40.0% | |
| GATACGCCAAGACTTTCTAT+TGG | + | chr5.4:8871010-8871029 | MS.gene015275:CDS | 40.0% | |
| GATGGGAAGAGACAAAAAAG+TGG | - | chr5.4:8869448-8869467 | None:intergenic | 40.0% | |
| GATTTGTCGTGATTTCACAG+AGG | - | chr5.4:8868075-8868094 | None:intergenic | 40.0% | |
| GGACACACCAGTTTAGAAAT+TGG | + | chr5.4:8867898-8867917 | MS.gene015275:intron | 40.0% | |
| GGATTTCTTGGAACTAATGG+CGG | - | chr5.4:8870355-8870374 | None:intergenic | 40.0% | |
| GTGCCTTCCAATTTCTAAAC+TGG | - | chr5.4:8867908-8867927 | None:intergenic | 40.0% | |
| TACATTGATCCATGTCTTGC+AGG | + | chr5.4:8870472-8870491 | MS.gene015275:intron | 40.0% | |
| TATAGTACTCCTGCAAGACA+TGG | - | chr5.4:8870484-8870503 | None:intergenic | 40.0% | |
| TCAATACCAAGGGTTGAGAT+TGG | + | chr5.4:8870785-8870804 | MS.gene015275:CDS | 40.0% | |
| TCATACATTTCCTCAGATGG+TGG | + | chr5.4:8868478-8868497 | MS.gene015275:CDS | 40.0% | |
| TCGATACAGTGTGTGTACTT+AGG | + | chr5.4:8870304-8870323 | MS.gene015275:CDS | 40.0% | |
| TGAATGTTGCCGACATTTAC+AGG | + | chr5.4:8868378-8868397 | MS.gene015275:intron | 40.0% | |
| TGTTATGGTGCAGGGTTTAA+GGG | + | chr5.4:8870691-8870710 | MS.gene015275:intron | 40.0% | |
| TTCACAAAAAATGGCCATGC+AGG | - | chr5.4:8869169-8869188 | None:intergenic | 40.0% | |
| ! | AAAACAAAGTGTTACCTGGC+TGG | - | chr5.4:8867565-8867584 | None:intergenic | 40.0% |
| ! | AAGCTTTTCCCTCTCACTTT+GGG | - | chr5.4:8870540-8870559 | None:intergenic | 40.0% |
| ! | ATCACAAAAAGGGGTGTGAT+GGG | + | chr5.4:8870199-8870218 | MS.gene015275:CDS | 40.0% |
| ! | GATATTTCTGATAGTAGGCC+TGG | - | chr5.4:8869865-8869884 | None:intergenic | 40.0% |
| ! | GGATACCACCTTTTGATCAA+CGG | + | chr5.4:8869136-8869155 | MS.gene015275:intron | 40.0% |
| ! | TAAGCTTTTCCCTCTCACTT+TGG | - | chr5.4:8870541-8870560 | None:intergenic | 40.0% |
| ! | TATGTCCTCTTTTGCTCTTG+TGG | - | chr5.4:8869734-8869753 | None:intergenic | 40.0% |
| !! | TTAAGAGGTATCAGAGGTGT+TGG | + | chr5.4:8868165-8868184 | MS.gene015275:intron | 40.0% |
| ACCAGTTAATGTATGCCGAC+AGG | + | chr5.4:8870133-8870152 | MS.gene015275:CDS | 45.0% | |
| ACTATTACTCGACGAGGAAG+AGG | - | chr5.4:8870972-8870991 | None:intergenic | 45.0% | |
| AGCAAGCTATGGTCTCAGAT+AGG | + | chr5.4:8871034-8871053 | MS.gene015275:CDS | 45.0% | |
| AGGGAGAAAGGAACAATGTG+AGG | + | chr5.4:8870064-8870083 | MS.gene015275:CDS | 45.0% | |
| AGTAGCGGCGATCACAAAAA+GGG | + | chr5.4:8870189-8870208 | MS.gene015275:CDS | 45.0% | |
| AGTCATATCTAATGTCCGCG+TGG | - | chr5.4:8867945-8867964 | None:intergenic | 45.0% | |
| ATGTGCCACAAGAGCAAAAG+AGG | + | chr5.4:8869726-8869745 | MS.gene015275:CDS | 45.0% | |
| CAAGAAATCCATAGCCGATC+AGG | + | chr5.4:8870365-8870384 | MS.gene015275:CDS | 45.0% | |
| CATAAACCATCCACCATCTG+AGG | - | chr5.4:8868491-8868510 | None:intergenic | 45.0% | |
| CCAGTTAATGTATGCCGACA+GGG | + | chr5.4:8870134-8870153 | MS.gene015275:CDS | 45.0% | |
| CCTCATGCACCAAATTGAGA+AGG | + | chr5.4:8868795-8868814 | MS.gene015275:CDS | 45.0% | |
| CTGAAAGATTACATCCAGCC+AGG | + | chr5.4:8867548-8867567 | MS.gene015275:CDS | 45.0% | |
| CTGATCGGCTATGGATTTCT+TGG | - | chr5.4:8870367-8870386 | None:intergenic | 45.0% | |
| GACTCGAACCGTTGATCAAA+AGG | - | chr5.4:8869147-8869166 | None:intergenic | 45.0% | |
| GATGATGAAGCAGAACTCCA+AGG | + | chr5.4:8869754-8869773 | MS.gene015275:CDS | 45.0% | |
| GATGTTCGAGAAAGCTTACG+AGG | - | chr5.4:8870944-8870963 | None:intergenic | 45.0% | |
| GGTTGAGAAACTTTGCTACC+GGG | + | chr5.4:8870085-8870104 | MS.gene015275:CDS | 45.0% | |
| GGTTTCACTTCTTGACCTGA+AGG | - | chr5.4:8870854-8870873 | None:intergenic | 45.0% | |
| GTCAAAGGAGAACACAGCAT+TGG | + | chr5.4:8869819-8869838 | MS.gene015275:CDS | 45.0% | |
| TCGAACCGTTGATCAAAAGG+TGG | - | chr5.4:8869144-8869163 | None:intergenic | 45.0% | |
| TCTCAGAACCCAAAGTGAGA+GGG | + | chr5.4:8870529-8870548 | MS.gene015275:CDS | 45.0% | |
| TGTATGACACTGACACACGT+TGG | - | chr5.4:8868888-8868907 | None:intergenic | 45.0% | |
| TTAGTAGATGCAAGGACAGG+GGG | + | chr5.4:8870235-8870254 | MS.gene015275:CDS | 45.0% | |
| ! | AACACAGCATTGGAGATGAG+TGG | + | chr5.4:8869829-8869848 | MS.gene015275:CDS | 45.0% |
| ! | ACACAGCATTGGAGATGAGT+GGG | + | chr5.4:8869830-8869849 | MS.gene015275:CDS | 45.0% |
| ! | ATGAAGTACCTGATCGGCTA+TGG | - | chr5.4:8870376-8870395 | None:intergenic | 45.0% |
| ! | ATGCCATAATGCACTGATGG+TGG | + | chr5.4:8870657-8870676 | MS.gene015275:intron | 45.0% |
| ! | CGGTTCTGATACAAGTTGTG+TGG | + | chr5.4:8868699-8868718 | MS.gene015275:intron | 45.0% |
| ! | GATCACAAAAAGGGGTGTGA+TGG | + | chr5.4:8870198-8870217 | MS.gene015275:CDS | 45.0% |
| ! | GTGACGATGAAGTACCTGAT+CGG | - | chr5.4:8870382-8870401 | None:intergenic | 45.0% |
| ! | TTGTTGAGACAAGAGTGTGG+TGG | + | chr5.4:8870887-8870906 | MS.gene015275:CDS | 45.0% |
| !! | ACATTTCCTCAGATGGTGGA+TGG | + | chr5.4:8868482-8868501 | MS.gene015275:CDS | 45.0% |
| !! | CCTTCTCAATTTGGTGCATG+AGG | - | chr5.4:8868798-8868817 | None:intergenic | 45.0% |
| !! | CTCAGATGGTGGATGGTTTA+TGG | + | chr5.4:8868489-8868508 | MS.gene015275:CDS | 45.0% |
| !! | GATGGTGGATGGTTTATGGA+CGG | + | chr5.4:8868493-8868512 | MS.gene015275:CDS | 45.0% |
| !! | GTGTGTTGGTTCATAGTGCT+TGG | + | chr5.4:8869115-8869134 | MS.gene015275:intron | 45.0% |
| !! | TAGAAGAGGCATCCAAACCT+GGG | + | chr5.4:8869968-8869987 | MS.gene015275:CDS | 45.0% |
| !! | TTCGGTGTTGATGTCGTGTT+TGG | + | chr5.4:8868984-8869003 | MS.gene015275:intron | 45.0% |
| AACCGTCTTGGGTCCCTAAT+GGG | - | chr5.4:8869994-8870013 | None:intergenic | 50.0% | |
| AGGGTTGAGATTGGAATGCG+AGG | + | chr5.4:8870794-8870813 | MS.gene015275:CDS | 50.0% | |
| ATCCAAACCTGGGCCCATTA+GGG | + | chr5.4:8869978-8869997 | MS.gene015275:CDS | 50.0% | |
| ATGAGTGGGATGGATAGACC+AGG | + | chr5.4:8869844-8869863 | MS.gene015275:CDS | 50.0% | |
| ATGCGAGGAGATGATGTGGT+AGG | + | chr5.4:8870809-8870828 | MS.gene015275:CDS | 50.0% | |
| CAATGCAGTGTTCCACGTCA+CGG | + | chr5.4:8868741-8868760 | MS.gene015275:intron | 50.0% | |
| CAGTAGCGGCGATCACAAAA+AGG | + | chr5.4:8870188-8870207 | MS.gene015275:CDS | 50.0% | |
| CATAAAGCACAGACACCACG+CGG | + | chr5.4:8867927-8867946 | MS.gene015275:intron | 50.0% | |
| CCCTGTCGGCATACATTAAC+TGG | - | chr5.4:8870137-8870156 | None:intergenic | 50.0% | |
| CGCATTCCAATCTCAACCCT+TGG | - | chr5.4:8870794-8870813 | None:intergenic | 50.0% | |
| CTCCAGCTGTTCCTTTACCT+GGG | - | chr5.4:8870019-8870038 | None:intergenic | 50.0% | |
| CTCTCAGAACCCAAAGTGAG+AGG | + | chr5.4:8870528-8870547 | MS.gene015275:CDS | 50.0% | |
| CTGCAATGTCACCTCAGCAA+CGG | + | chr5.4:8869906-8869925 | MS.gene015275:CDS | 50.0% | |
| CTGGCAAGAAACTCACTGAC+AGG | + | chr5.4:8868770-8868789 | MS.gene015275:CDS | 50.0% | |
| GACATGTGCCAGTGTTGTGT+CGG | - | chr5.4:8869541-8869560 | None:intergenic | 50.0% | |
| GCTTGTCATGGAGACAGTAG+CGG | + | chr5.4:8870174-8870193 | MS.gene015275:CDS | 50.0% | |
| GTAGCGGCGATCACAAAAAG+GGG | + | chr5.4:8870190-8870209 | MS.gene015275:CDS | 50.0% | |
| GTCATACACCGACACAACAC+TGG | + | chr5.4:8869530-8869549 | MS.gene015275:intron | 50.0% | |
| GTGAATATTCTGCGCAGCCT+TGG | - | chr5.4:8869774-8869793 | None:intergenic | 50.0% | |
| TAACTGGTGAAGCCGTCGTT+CGG | - | chr5.4:8870121-8870140 | None:intergenic | 50.0% | |
| TATGCCGACAGGGACTATGA+GGG | + | chr5.4:8870144-8870163 | MS.gene015275:CDS | 50.0% | |
| TCCTTTCTCCCTTCTCACCA+CGG | - | chr5.4:8870056-8870075 | None:intergenic | 50.0% | |
| TCTCCAGCTGTTCCTTTACC+TGG | - | chr5.4:8870020-8870039 | None:intergenic | 50.0% | |
| TGGAATGCGAGGAGATGATG+TGG | + | chr5.4:8870805-8870824 | MS.gene015275:CDS | 50.0% | |
| TTCAATTTCCGCTGCGACAC+AGG | + | chr5.4:8869253-8869272 | MS.gene015275:intron | 50.0% | |
| ! | AGCATTGGAGATGAGTGGGA+TGG | + | chr5.4:8869834-8869853 | MS.gene015275:CDS | 50.0% |
| !! | AAACCAGTGGCGGATCTTCT+TGG | - | chr5.4:8869353-8869372 | None:intergenic | 50.0% |
| !! | AACCAGTGGCGGATCTTCTT+GGG | - | chr5.4:8869352-8869371 | None:intergenic | 50.0% |
| !! | ATGCAAGGACAGGGGGTATT+GGG | + | chr5.4:8870242-8870261 | MS.gene015275:CDS | 50.0% |
| !! | GGTGGTGAACTTGGTGTGTA+GGG | + | chr5.4:8870263-8870282 | MS.gene015275:CDS | 50.0% |
| !! | GTAGAAGAGGCATCCAAACC+TGG | + | chr5.4:8869967-8869986 | MS.gene015275:CDS | 50.0% |
| AAGTTGTGCCTGTGTCGCAG+CGG | - | chr5.4:8869264-8869283 | None:intergenic | 55.0% | |
| ACAGCCCTCATAGTCCCTGT+CGG | - | chr5.4:8870151-8870170 | None:intergenic | 55.0% | |
| ATGTCACCTCAGCAACGGCA+TGG | + | chr5.4:8869911-8869930 | MS.gene015275:CDS | 55.0% | |
| ATTAGATCTGGGGGGAGCCA+TGG | + | chr5.4:8869314-8869333 | MS.gene015275:intron | 55.0% | |
| CAACCGTCTTGGGTCCCTAA+TGG | - | chr5.4:8869995-8870014 | None:intergenic | 55.0% | |
| CATCCAAACCTGGGCCCATT+AGG | + | chr5.4:8869977-8869996 | MS.gene015275:CDS | 55.0% | |
| CATTAGGGACCCAAGACGGT+TGG | + | chr5.4:8869993-8870012 | MS.gene015275:CDS | 55.0% | |
| CCTTTCTCCCTTCTCACCAC+GGG | - | chr5.4:8870055-8870074 | None:intergenic | 55.0% | |
| GCAGGCTACCCTTCCATTGT+GGG | - | chr5.4:8869938-8869957 | None:intergenic | 55.0% | |
| GGCATGGACCCACAATGGAA+GGG | + | chr5.4:8869927-8869946 | MS.gene015275:CDS | 55.0% | |
| GTATGCCGACAGGGACTATG+AGG | + | chr5.4:8870143-8870162 | MS.gene015275:CDS | 55.0% | |
| TCAACGGTTCGAGTCCTGCA+TGG | + | chr5.4:8869152-8869171 | MS.gene015275:intron | 55.0% | |
| TGCAGGCTACCCTTCCATTG+TGG | - | chr5.4:8869939-8869958 | None:intergenic | 55.0% | |
| TTACCTGGGCCAACCGTCTT+GGG | - | chr5.4:8870005-8870024 | None:intergenic | 55.0% | |
| TTCCACGTCACGGATCAAGC+TGG | + | chr5.4:8868751-8868770 | MS.gene015275:CDS | 55.0% | |
| TTTACCTGGGCCAACCGTCT+TGG | - | chr5.4:8870006-8870025 | None:intergenic | 55.0% | |
| ! | AAGACGGTTGGCCCAGGTAA+AGG | + | chr5.4:8870005-8870024 | MS.gene015275:CDS | 55.0% |
| ! | GATGCAAGGACAGGGGGTAT+TGG | + | chr5.4:8870241-8870260 | MS.gene015275:CDS | 55.0% |
| !! | GGAACAGCTGGAGAGTGTTG+TGG | + | chr5.4:8870026-8870045 | MS.gene015275:CDS | 55.0% |
| !! | GGGGTATTGGGTGGTGAACT+TGG | + | chr5.4:8870254-8870273 | MS.gene015275:CDS | 55.0% |
| !! | GGGTGGTGAACTTGGTGTGT+AGG | + | chr5.4:8870262-8870281 | MS.gene015275:CDS | 55.0% |
| CCCGTGGTGAGAAGGGAGAA+AGG | + | chr5.4:8870052-8870071 | MS.gene015275:CDS | 60.0% | |
| CGGATCTTCTTGGGAGCCCA+TGG | - | chr5.4:8869343-8869362 | None:intergenic | 60.0% | |
| CGGCATGGACCCACAATGGA+AGG | + | chr5.4:8869926-8869945 | MS.gene015275:CDS | 60.0% | |
| CTCCCAAGAAGATCCGCCAC+TGG | + | chr5.4:8869347-8869366 | MS.gene015275:intron | 60.0% | |
| GCAACGGCATGGACCCACAA+TGG | + | chr5.4:8869922-8869941 | MS.gene015275:CDS | 60.0% | |
| GGCCCAGGTAAAGGAACAGC+TGG | + | chr5.4:8870014-8870033 | MS.gene015275:CDS | 60.0% | |
| GGCCCATTAGGGACCCAAGA+CGG | + | chr5.4:8869989-8870008 | MS.gene015275:CDS | 60.0% | |
| GTGGTGACCCGTGGTGAGAA+GGG | + | chr5.4:8870045-8870064 | MS.gene015275:CDS | 60.0% | |
| TGCCAGCTTGATCCGTGACG+TGG | - | chr5.4:8868756-8868775 | None:intergenic | 60.0% | |
| TGTGGTGACCCGTGGTGAGA+AGG | + | chr5.4:8870044-8870063 | MS.gene015275:CDS | 60.0% | |
| TTGGGAGCCCATGGTAGCCA+TGG | - | chr5.4:8869334-8869353 | None:intergenic | 60.0% | |
| ! | GTCCCTAATGGGCCCAGGTT+TGG | - | chr5.4:8869983-8870002 | None:intergenic | 60.0% |
| !! | CAAGGACAGGGGGTATTGGG+TGG | + | chr5.4:8870245-8870264 | MS.gene015275:CDS | 60.0% |
| !! | GAGAGTGTTGTGGTGACCCG+TGG | + | chr5.4:8870036-8870055 | MS.gene015275:CDS | 60.0% |
| GAGGGCTGTCGCGCTTGTCA+TGG | + | chr5.4:8870162-8870181 | MS.gene015275:CDS | 65.0% | |
| GGCGCACACACACCGAACGA+CGG | + | chr5.4:8870106-8870125 | MS.gene015275:CDS | 65.0% | |
| GGGGGAGCCATGGCTACCAT+GGG | + | chr5.4:8869324-8869343 | MS.gene015275:intron | 65.0% | |
| GTGGGTCCATGCCGTTGCTG+AGG | - | chr5.4:8869920-8869939 | None:intergenic | 65.0% | |
| ! | CTTGGGTCCCTAATGGGCCC+AGG | - | chr5.4:8869988-8870007 | None:intergenic | 65.0% |
| !! | TCGTTCGGTGTGTGTGCGCC+CGG | - | chr5.4:8870106-8870125 | None:intergenic | 65.0% |
| GGGGGGAGCCATGGCTACCA+TGG | + | chr5.4:8869323-8869342 | MS.gene015275:intron | 70.0% | |
| ! | GGACCCAAGACGGTTGGCCC+AGG | + | chr5.4:8869999-8870018 | MS.gene015275:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 8867499 | 8871093 | 8867499 | ID=MS.gene015275 |
| chr5.4 | mRNA | 8867499 | 8871093 | 8867499 | ID=MS.gene015275.t1;Parent=MS.gene015275 |
| chr5.4 | exon | 8867499 | 8867569 | 8867499 | ID=MS.gene015275.t1.exon1;Parent=MS.gene015275.t1 |
| chr5.4 | CDS | 8867499 | 8867569 | 8867499 | ID=cds.MS.gene015275.t1;Parent=MS.gene015275.t1 |
| chr5.4 | exon | 8867664 | 8867709 | 8867664 | ID=MS.gene015275.t1.exon2;Parent=MS.gene015275.t1 |
| chr5.4 | CDS | 8867664 | 8867709 | 8867664 | ID=cds.MS.gene015275.t1;Parent=MS.gene015275.t1 |
| chr5.4 | exon | 8868400 | 8868514 | 8868400 | ID=MS.gene015275.t1.exon3;Parent=MS.gene015275.t1 |
| chr5.4 | CDS | 8868400 | 8868514 | 8868400 | ID=cds.MS.gene015275.t1;Parent=MS.gene015275.t1 |
| chr5.4 | exon | 8868749 | 8868816 | 8868749 | ID=MS.gene015275.t1.exon4;Parent=MS.gene015275.t1 |
| chr5.4 | CDS | 8868749 | 8868816 | 8868749 | ID=cds.MS.gene015275.t1;Parent=MS.gene015275.t1 |
| chr5.4 | exon | 8869721 | 8870386 | 8869721 | ID=MS.gene015275.t1.exon5;Parent=MS.gene015275.t1 |
| chr5.4 | CDS | 8869721 | 8870386 | 8869721 | ID=cds.MS.gene015275.t1;Parent=MS.gene015275.t1 |
| chr5.4 | exon | 8870494 | 8870601 | 8870494 | ID=MS.gene015275.t1.exon6;Parent=MS.gene015275.t1 |
| chr5.4 | CDS | 8870494 | 8870601 | 8870494 | ID=cds.MS.gene015275.t1;Parent=MS.gene015275.t1 |
| chr5.4 | exon | 8870704 | 8871093 | 8870704 | ID=MS.gene015275.t1.exon7;Parent=MS.gene015275.t1 |
| chr5.4 | CDS | 8870704 | 8871093 | 8870704 | ID=cds.MS.gene015275.t1;Parent=MS.gene015275.t1 |
| Gene Sequence |
| Protein sequence |
