AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09616

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09616.t1 MTR_5g015170 98.152 487 8 1 1 487 1 486 0.0 983
MS.gene09616.t1 MTR_4g097380 52.439 492 209 7 1 487 19 490 1.22e-176 505
MS.gene09616.t1 MTR_3g088885 46.437 435 209 11 1 431 1 415 3.68e-126 375
MS.gene09616.t1 MTR_7g022470 43.213 442 227 6 9 449 10 428 3.20e-122 365
MS.gene09616.t1 MTR_5g047260 45.824 443 210 8 9 450 17 430 3.24e-122 365
MS.gene09616.t1 MTR_1g029520 45.775 426 211 8 20 438 249 661 2.26e-119 365
MS.gene09616.t1 MTR_7g028050 43.192 426 211 7 9 429 1 400 1.98e-116 350
MS.gene09616.t1 MTR_5g011580 42.005 419 205 7 12 428 9 391 5.75e-106 323
MS.gene09616.t1 MTR_4g101950 41.587 416 207 6 12 426 9 389 8.57e-106 322
MS.gene09616.t1 MTR_5g047260 47.429 350 156 7 9 357 17 339 6.22e-97 297
MS.gene09616.t1 MTR_5g047260 47.022 319 142 6 9 326 17 309 1.94e-85 266
MS.gene09616.t1 MTR_7g028050 42.904 303 155 6 132 429 8 297 6.42e-78 247
MS.gene09616.t1 MTR_1g012740 43.137 102 51 2 293 394 54 148 1.77e-16 77.4
MS.gene09616.t1 MTR_1g012740 34.756 164 71 7 1 158 1 134 1.38e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09616.t1 AT5G65890 48.178 494 223 9 1 482 2 474 1.34e-152 443
MS.gene09616.t1 AT5G65890 48.178 494 223 9 1 482 2 474 1.34e-152 443
MS.gene09616.t1 AT1G76990 45.721 444 216 5 1 440 1 423 5.87e-133 392
MS.gene09616.t1 AT1G76990 45.721 444 216 5 1 440 1 423 5.87e-133 392
MS.gene09616.t1 AT1G76990 45.721 444 216 5 1 440 1 423 5.87e-133 392
MS.gene09616.t1 AT1G76990 45.721 444 216 5 1 440 1 423 5.87e-133 392
MS.gene09616.t1 AT1G76990 45.721 444 216 5 1 440 1 423 5.87e-133 392
MS.gene09616.t1 AT5G65890 46.652 448 202 9 52 485 1 425 2.59e-127 377
MS.gene09616.t1 AT5G65890 46.652 448 202 9 52 485 1 425 2.59e-127 377
MS.gene09616.t1 AT5G25320 40.980 510 267 11 1 486 1 500 4.21e-124 371
MS.gene09616.t1 AT1G69040 43.111 450 230 8 5 452 3 428 3.11e-122 365
MS.gene09616.t1 AT1G69040 43.111 450 230 8 5 452 7 432 3.42e-122 365
MS.gene09616.t1 AT2G03730 44.965 427 217 6 5 429 7 417 4.33e-119 357
MS.gene09616.t1 AT2G03730 44.965 427 217 6 5 429 7 417 4.33e-119 357
MS.gene09616.t1 AT5G25320 40.764 471 247 10 38 486 1 461 1.08e-114 346
MS.gene09616.t1 AT3G01990 44.869 419 205 6 10 428 17 409 3.19e-114 344
MS.gene09616.t1 AT3G01990 44.869 419 205 6 10 428 17 409 3.19e-114 344
MS.gene09616.t1 AT3G01990 44.869 419 205 6 10 428 3 395 4.72e-114 343
MS.gene09616.t1 AT3G01990 44.869 419 205 6 10 428 3 395 4.72e-114 343
MS.gene09616.t1 AT3G01990 44.524 420 205 6 10 428 17 409 5.20e-114 343
MS.gene09616.t1 AT3G01990 44.524 420 205 6 10 428 3 395 5.44e-114 343
MS.gene09616.t1 AT4G22780 44.231 416 196 6 12 426 9 389 1.64e-108 330
MS.gene09616.t1 AT4G22780 44.231 416 196 6 12 426 9 389 1.64e-108 330
MS.gene09616.t1 AT1G12420 41.928 415 209 5 12 426 9 391 1.09e-103 317
MS.gene09616.t1 AT5G65890 45.753 365 171 7 133 485 14 363 6.92e-99 302
MS.gene09616.t1 AT5G25320 43.799 379 182 9 1 356 1 371 1.04e-97 300
MS.gene09616.t1 AT3G01990 44.828 348 166 6 10 357 17 338 7.46e-93 286
MS.gene09616.t1 AT3G01990 44.568 359 167 7 10 362 17 349 1.00e-92 286
MS.gene09616.t1 AT3G01990 44.568 359 167 7 10 362 3 335 1.45e-92 285
MS.gene09616.t1 AT3G01990 44.586 314 147 6 10 322 17 304 1.46e-79 251
MS.gene09616.t1 AT3G01990 43.949 314 149 5 10 322 3 290 2.02e-79 250
MS.gene09616.t1 AT1G12420 39.031 351 182 5 76 426 1 319 8.11e-77 245

Find 132 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACAATTCCACTATATT+TGG 0.129234 5.2:-7128759 None:intergenic
ATGTTATGGTGCAGGGTTTA+AGG 0.149741 5.2:+7128577 MS.gene09616:intron
CTCAGATGGTGGATGGTTTA+TGG 0.175362 5.2:+7126375 MS.gene09616:CDS
CAACCGTCTTGGGTCCCTAA+TGG 0.292246 5.2:-7127879 None:intergenic
GTTGATAGTGCAAACAAGTA+TGG 0.292710 5.2:+7126286 MS.gene09616:CDS
CATCCAAACCTGGGCCCATT+AGG 0.303226 5.2:+7127864 MS.gene09616:CDS
CTGATCGGCTATGGATTTCT+TGG 0.307288 5.2:-7128251 None:intergenic
ACTCGTGTGATTCGTGAAAA+TGG 0.308494 5.2:+7128645 MS.gene09616:CDS
CAGTAGCGGCGATCACAAAA+AGG 0.321891 5.2:+7128075 MS.gene09616:CDS
GTCCCTAATGGGCCCAGGTT+TGG 0.329663 5.2:-7127867 None:intergenic
TATGGATTTCTTGGAACTAA+TGG 0.329739 5.2:-7128242 None:intergenic
TCTCCAGCTGTTCCTTTACC+TGG 0.332514 5.2:-7127904 None:intergenic
GAGAGAATCTCACGATTTAA+TGG 0.338232 5.2:-7128967 None:intergenic
CCCTGTCGGCATACATTAAC+TGG 0.338582 5.2:-7128021 None:intergenic
AACCGTCTTGGGTCCCTAAT+GGG 0.339779 5.2:-7127878 None:intergenic
TTTACCTGGGCCAACCGTCT+TGG 0.354606 5.2:-7127890 None:intergenic
CGATACAGTGTGTGTACTTA+GGG 0.366686 5.2:+7128192 MS.gene09616:CDS
AGAGAATCTCACGATTTAAT+GGG 0.377098 5.2:-7128966 None:intergenic
TTACCTGGGCCAACCGTCTT+GGG 0.381992 5.2:-7127889 None:intergenic
ATTTGCACTGAAAATAAAAC+AGG 0.402096 5.2:+7128606 MS.gene09616:CDS
GATACGCCAAGACTTTCTAT+TGG 0.402236 5.2:+7128897 MS.gene09616:CDS
TCTTGCAGGAGTACTATATA+AGG 0.406529 5.2:+7128373 MS.gene09616:intron
GGGGTATTGGGTGGTGAACT+TGG 0.414673 5.2:+7128141 MS.gene09616:CDS
CAAGAAATCCATAGCCGATC+AGG 0.418699 5.2:+7128252 MS.gene09616:CDS
TGTTATGGTGCAGGGTTTAA+GGG 0.420837 5.2:+7128578 MS.gene09616:intron
TCGATACAGTGTGTGTACTT+AGG 0.426194 5.2:+7128191 MS.gene09616:CDS
GCAGGCTACCCTTCCATTGT+GGG 0.435839 5.2:-7127822 None:intergenic
TTCTATGTCAGAAATCCTTC+AGG 0.436835 5.2:+7128723 MS.gene09616:CDS
ATCCAAACCTGGGCCCATTA+GGG 0.444278 5.2:+7127865 MS.gene09616:CDS
GGTGGTGAACTTGGTGTGTA+GGG 0.445141 5.2:+7128150 MS.gene09616:CDS
TCGTTCGGTGTGTGTGCGCC+CGG 0.457740 5.2:-7127990 None:intergenic
TCAATACCAAGGGTTGAGAT+TGG 0.463256 5.2:+7128672 MS.gene09616:CDS
GTATGCCGACAGGGACTATG+AGG 0.470907 5.2:+7128030 MS.gene09616:CDS
GTGAATATTCTGCGCAGCCT+TGG 0.471293 5.2:-7127658 None:intergenic
GGGTGGTGAACTTGGTGTGT+AGG 0.481307 5.2:+7128149 MS.gene09616:CDS
CCTTCTCAATTTGGTGCATG+AGG 0.482265 5.2:-7126681 None:intergenic
CCTTTCTCCCTTCTCACCAC+GGG 0.483438 5.2:-7127939 None:intergenic
GTAGAAGAGGCATCCAAACC+TGG 0.484993 5.2:+7127854 MS.gene09616:CDS
AGAAGTGAAACCAAATATAG+TGG 0.487558 5.2:+7128749 MS.gene09616:CDS
ATGAAGTACCTGATCGGCTA+TGG 0.488476 5.2:-7128260 None:intergenic
CGCATTCCAATCTCAACCCT+TGG 0.489030 5.2:-7128678 None:intergenic
CTTGGGTCCCTAATGGGCCC+AGG 0.491215 5.2:-7127872 None:intergenic
ATGTGCCACAAGAGCAAAAG+AGG 0.493335 5.2:+7127613 MS.gene09616:CDS
CTCCAGCTGTTCCTTTACCT+GGG 0.494258 5.2:-7127903 None:intergenic
CTGCTGATATTTCTGATAGT+AGG 0.497761 5.2:-7127754 None:intergenic
CCCGTGGTGAGAAGGGAGAA+AGG 0.498977 5.2:+7127939 MS.gene09616:CDS
AAGACGGTTGGCCCAGGTAA+AGG 0.499864 5.2:+7127892 MS.gene09616:CDS
TAACTGGTGAAGCCGTCGTT+CGG 0.499936 5.2:-7128005 None:intergenic
GATATTTCTGATAGTAGGCC+TGG 0.500326 5.2:-7127749 None:intergenic
TCCTTTCTCCCTTCTCACCA+CGG 0.500399 5.2:-7127940 None:intergenic
GGTTTCACTTCTTGACCTGA+AGG 0.505004 5.2:-7128738 None:intergenic
CTCACGATTTAATGGGGCTA+AGG 0.506228 5.2:-7128959 None:intergenic
AAAACAAAGTGTTACCTGGC+TGG 0.507971 5.2:-7125468 None:intergenic
GGCCCAGGTAAAGGAACAGC+TGG 0.508319 5.2:+7127901 MS.gene09616:CDS
AAGTCATACATTTCCTCAGA+TGG 0.511270 5.2:+7126361 MS.gene09616:CDS
CTCAAAACAAATTGTGTCAA+AGG 0.511876 5.2:+7127691 MS.gene09616:CDS
AGGTTGAGAAACTTTGCTAC+CGG 0.516920 5.2:+7127971 MS.gene09616:CDS
ATCTGAGGAAATGTATGACT+TGG 0.517740 5.2:-7126359 None:intergenic
ATCAGAAATATCAGCAGTGT+TGG 0.520345 5.2:+7127760 MS.gene09616:CDS
CTCTTCTACGTAAAGAATGC+AGG 0.520671 5.2:-7127840 None:intergenic
ACTATTACTCGACGAGGAAG+AGG 0.523834 5.2:-7128856 None:intergenic
TTGCTTCCAATAGAAAGTCT+TGG 0.523994 5.2:-7128903 None:intergenic
CGGCATGGACCCACAATGGA+AGG 0.526482 5.2:+7127813 MS.gene09616:CDS
ACCAGTTAATGTATGCCGAC+AGG 0.528524 5.2:+7128020 MS.gene09616:CDS
ACATTTCCTCAGATGGTGGA+TGG 0.530471 5.2:+7126368 MS.gene09616:CDS
TTTCTATTGGAAGCAAGCTA+TGG 0.532707 5.2:+7128910 MS.gene09616:CDS
TGCAGGCTACCCTTCCATTG+TGG 0.532960 5.2:-7127823 None:intergenic
AGCAAGCTATGGTCTCAGAT+AGG 0.533710 5.2:+7128921 MS.gene09616:CDS
CTATTAGTAGATGCAAGGAC+AGG 0.535659 5.2:+7128119 MS.gene09616:CDS
TAGTGAAAATAGTAGTATAG+AGG 0.539821 5.2:+7128875 MS.gene09616:CDS
TTGATAGTGCAAACAAGTAT+GGG 0.540593 5.2:+7126287 MS.gene09616:CDS
CTGCATTCTTTACGTAGAAG+AGG 0.548254 5.2:+7127841 MS.gene09616:CDS
TATTAGTAGATGCAAGGACA+GGG 0.549071 5.2:+7128120 MS.gene09616:CDS
GGACCCAAGACGGTTGGCCC+AGG 0.553645 5.2:+7127886 MS.gene09616:CDS
TGTGGTGACCCGTGGTGAGA+AGG 0.555690 5.2:+7127931 MS.gene09616:CDS
GGTTGAGAAACTTTGCTACC+GGG 0.558145 5.2:+7127972 MS.gene09616:CDS
CCAGTTAATGTATGCCGACA+GGG 0.559631 5.2:+7128021 MS.gene09616:CDS
GTCAAAGGAGAACACAGCAT+TGG 0.563927 5.2:+7127706 MS.gene09616:CDS
CTGAAAGATTACATCCAGCC+AGG 0.565709 5.2:+7125454 MS.gene09616:CDS
TGCCTGCTTGATCCGTGACG+TGG 0.569531 5.2:-7126639 None:intergenic
CAGGCAAGAAACTCACTGAC+AGG 0.569567 5.2:+7126656 MS.gene09616:CDS
ACACAGCATTGGAGATGAGT+GGG 0.569581 5.2:+7127717 MS.gene09616:CDS
GAGGGCTGTCGCGCTTGTCA+CGG 0.569923 5.2:+7128049 MS.gene09616:CDS
GATATTATTAGAGATGGTAC+AGG 0.574494 5.2:+7126309 MS.gene09616:CDS
GTGATCAGTAACTACATCTA+CGG 0.580956 5.2:-7128799 None:intergenic
CTCTCAGAACCCAAAGTGAG+AGG 0.582014 5.2:+7128415 MS.gene09616:CDS
GGATTTCTTGGAACTAATGG+CGG 0.585123 5.2:-7128239 None:intergenic
TCTCAGAACCCAAAGTGAGA+GGG 0.585577 5.2:+7128416 MS.gene09616:CDS
CATAAACCATCCACCATCTG+AGG 0.586219 5.2:-7126374 None:intergenic
CATTAGGGACCCAAGACGGT+TGG 0.588293 5.2:+7127880 MS.gene09616:CDS
GGCGCACACACACCGAACGA+CGG 0.589313 5.2:+7127993 MS.gene09616:CDS
TATATAAGGCACAAGTGGAA+TGG 0.589958 5.2:+7128387 MS.gene09616:CDS
AGGGAGAAAGGAACAATGTG+AGG 0.594047 5.2:+7127951 MS.gene09616:CDS
ATGTCACCTCAGCAACGGCA+TGG 0.596380 5.2:+7127798 MS.gene09616:CDS
CCTCATGCACCAAATTGAGA+AGG 0.597211 5.2:+7126681 MS.gene09616:CDS
CTGCAATGTCACCTCAGCAA+CGG 0.599321 5.2:+7127793 MS.gene09616:CDS
GTGGTGACCCGTGGTGAGAA+GGG 0.599795 5.2:+7127932 MS.gene09616:CDS
CAATGCAGTGTTCCACGTCA+CGG 0.606463 5.2:+7126627 MS.gene09616:intron
GTATGGGATATTATTAGAGA+TGG 0.607389 5.2:+7126303 MS.gene09616:CDS
AGTACTATATAAGGCACAAG+TGG 0.608265 5.2:+7128382 MS.gene09616:CDS
AAATGGACTATCAATACCAA+GGG 0.608641 5.2:+7128662 MS.gene09616:CDS
TTCCACGTCACGGATCAAGC+AGG 0.608778 5.2:+7126637 MS.gene09616:CDS
GATGATGAAGCAGAACTCCA+AGG 0.609526 5.2:+7127641 MS.gene09616:CDS
TAAAGACTGTACTGTTGTGA+AGG 0.613082 5.2:+7125598 MS.gene09616:CDS
TGTGTCTATTAGTAGATGCA+AGG 0.614395 5.2:+7128114 MS.gene09616:CDS
GCAACGGCATGGACCCACAA+TGG 0.615665 5.2:+7127809 MS.gene09616:CDS
AAAATGGACTATCAATACCA+AGG 0.618601 5.2:+7128661 MS.gene09616:CDS
TCATACATTTCCTCAGATGG+TGG 0.619116 5.2:+7126364 MS.gene09616:CDS
AACACAGCATTGGAGATGAG+TGG 0.622791 5.2:+7127716 MS.gene09616:CDS
TAGAAGAGGCATCCAAACCT+GGG 0.631343 5.2:+7127855 MS.gene09616:CDS
AGCATTGGAGATGAGTGGGA+TGG 0.641022 5.2:+7127721 MS.gene09616:CDS
AGGGTTGAGATTGGAATGCG+AGG 0.641150 5.2:+7128681 MS.gene09616:CDS
GGCCCATTAGGGACCCAAGA+CGG 0.641597 5.2:+7127876 MS.gene09616:CDS
GATGGTGGATGGTTTATGGA+CGG 0.644975 5.2:+7126379 MS.gene09616:CDS
TTAGTAGATGCAAGGACAGG+GGG 0.646835 5.2:+7128122 MS.gene09616:CDS
GGCATGGACCCACAATGGAA+GGG 0.647070 5.2:+7127814 MS.gene09616:CDS
ATGAGTGGGATGGATAGACC+AGG 0.647189 5.2:+7127731 MS.gene09616:CDS
GAGAGTGTTGTGGTGACCCG+TGG 0.647944 5.2:+7127923 MS.gene09616:CDS
GTGGGTCCATGCCGTTGCTG+AGG 0.652331 5.2:-7127804 None:intergenic
GTGACGATGAAGTACCTGAT+CGG 0.654044 5.2:-7128266 None:intergenic
ACAGCCCTCATAGTCCCTGT+CGG 0.660415 5.2:-7128035 None:intergenic
TGGAATGCGAGGAGATGATG+TGG 0.665858 5.2:+7128692 MS.gene09616:CDS
TATGCCGACAGGGACTATGA+GGG 0.670406 5.2:+7128031 MS.gene09616:CDS
GAGAATCTCACGATTTAATG+GGG 0.681496 5.2:-7128965 None:intergenic
GCTTGTCACGGAGACAGTAG+CGG 0.683905 5.2:+7128061 MS.gene09616:CDS
ATTAGTAGATGCAAGGACAG+GGG 0.684726 5.2:+7128121 MS.gene09616:CDS
GATGTTCGAGAAAGCTTACG+AGG 0.684804 5.2:-7128828 None:intergenic
ATGCGAGGAGATGATGTGGT+AGG 0.689656 5.2:+7128696 MS.gene09616:CDS
GGAACAGCTGGAGAGTGTTG+TGG 0.690059 5.2:+7127913 MS.gene09616:CDS
TGTATGACTTGGAAATGATG+AGG 0.695973 5.2:-7126348 None:intergenic
TTGTTGAGACAAGAGTGTGG+TGG 0.733636 5.2:+7128774 MS.gene09616:CDS
GAATTGTTGAGACAAGAGTG+TGG 0.752168 5.2:+7128771 MS.gene09616:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATGTAACAAATATT+TGG - chr5.2:7126953-7126972 None:intergenic 10.0%
!! TACATAATTAATTAACTAAT+CGG - chr5.2:7125511-7125530 None:intergenic 10.0%
!! TTCATAAAATATAACAAAAA+AGG + chr5.2:7125787-7125806 MS.gene09616:intron 10.0%
!!! TATTTTTATTTCACAAAAAA+TGG - chr5.2:7127065-7127084 None:intergenic 10.0%
!!! TTTTTTTTGTTGTTATAATT+AGG - chr5.2:7126140-7126159 None:intergenic 10.0%
!! AATAATAAGGATACATAAAA+AGG - chr5.2:7128524-7128543 None:intergenic 15.0%
!! ATTAGTATTAAAACTAAAGT+CGG + chr5.2:7125760-7125779 MS.gene09616:intron 15.0%
!! TAAATTTCTATATACAAAAG+AGG - chr5.2:7125703-7125722 None:intergenic 15.0%
!!! ATATAGAAATTTAATTTAGC+TGG + chr5.2:7125710-7125729 MS.gene09616:intron 15.0%
!!! GTACAAAATATTTTATTGAT+GGG - chr5.2:7127352-7127371 None:intergenic 15.0%
!!! GTAGAAAATATTTTATTGAT+AGG - chr5.2:7126721-7126740 None:intergenic 15.0%
!!! TCATTTTCTTAGATAATTAT+CGG + chr5.2:7126834-7126853 MS.gene09616:intron 15.0%
!!! TTTAGTTTTAATACTAATAC+AGG - chr5.2:7125758-7125777 None:intergenic 15.0%
!! AAATATGAAGAAAAAAGAGA+TGG + chr5.2:7127080-7127099 MS.gene09616:intron 20.0%
!! ATGGTATTTATATTAGATCT+GGG + chr5.2:7127190-7127209 MS.gene09616:intron 20.0%
!! ATTATCATTATCATGGTTTA+TGG - chr5.2:7126461-7126480 None:intergenic 20.0%
!! TATGGTATTTATATTAGATC+TGG + chr5.2:7127189-7127208 MS.gene09616:intron 20.0%
!! TTGATCAATTATCATTATCA+TGG - chr5.2:7126468-7126487 None:intergenic 20.0%
!!! GGTACAAAATATTTTATTGA+TGG - chr5.2:7127353-7127372 None:intergenic 20.0%
!!! GTAATTAATTTTCTGCTAAT+TGG + chr5.2:7125548-7125567 MS.gene09616:intron 20.0%
!!! TCATTTTCTCAGAAAATTAT+CGG + chr5.2:7127464-7127483 MS.gene09616:intron 20.0%
!!! TTATTTTCTCAAATTGCTAT+TGG - chr5.2:7125885-7125904 None:intergenic 20.0%
! AAAAGGAAAATCTTAATGCT+AGG - chr5.2:7128507-7128526 None:intergenic 25.0%
! AAAATTAAGTCAAAATGCGA+TGG - chr5.2:7126201-7126220 None:intergenic 25.0%
! ACAAAAAAACCTTCTCAATT+TGG - chr5.2:7126693-7126712 None:intergenic 25.0%
! ATACAGGAAAACAATGTTAA+AGG - chr5.2:7126434-7126453 None:intergenic 25.0%
! ATTTGCACTGAAAATAAAAC+AGG + chr5.2:7128606-7128625 MS.gene09616:CDS 25.0%
! CAAAAAAAAAGTTGCTAAAG+AGG + chr5.2:7126151-7126170 MS.gene09616:intron 25.0%
! CTAACAAGATCTTAAACATA+AGG - chr5.2:7125917-7125936 None:intergenic 25.0%
! GATATCAGCAAAAAAATTAG+TGG + chr5.2:7126560-7126579 MS.gene09616:intron 25.0%
! TACACATTCAATCATAAGTA+TGG - chr5.2:7127374-7127393 None:intergenic 25.0%
! TAGTGAAAATAGTAGTATAG+AGG + chr5.2:7128875-7128894 MS.gene09616:CDS 25.0%
! TGCATTATGGCATAATAATA+AGG - chr5.2:7128537-7128556 None:intergenic 25.0%
! TGGATCAATGTAATTAATGA+CGG - chr5.2:7128351-7128370 None:intergenic 25.0%
! TGGTATTTATATTAGATCTG+GGG + chr5.2:7127191-7127210 MS.gene09616:intron 25.0%
! TTCTGATAAAAAAACGTGTT+TGG - chr5.2:7126080-7126099 None:intergenic 25.0%
!! CTTATGTTTAAGATCTTGTT+AGG + chr5.2:7125915-7125934 MS.gene09616:intron 25.0%
!! TTTTCAAACAAGATGATATG+TGG + chr5.2:7126980-7126999 MS.gene09616:intron 25.0%
!!! ATCTTAATGCTAGGTTTTAT+AGG - chr5.2:7128498-7128517 None:intergenic 25.0%
!!! GTGGTTTTTTATGTATGTTA+TGG + chr5.2:7128563-7128582 MS.gene09616:intron 25.0%
ACAGATGTGTTTATGTTCAT+AGG + chr5.2:7127300-7127319 MS.gene09616:intron 30.0%
ACTGTATCGAAAAACAACTT+GGG - chr5.2:7128181-7128200 None:intergenic 30.0%
AGAAGTGAAACCAAATATAG+TGG + chr5.2:7128749-7128768 MS.gene09616:CDS 30.0%
ATCTTGACAAAATATTTGGG+GGG + chr5.2:7126925-7126944 MS.gene09616:intron 30.0%
ATGAAGAAAAAAGAGATGGA+AGG + chr5.2:7127084-7127103 MS.gene09616:intron 30.0%
CACATATTCAATCAGAAGTA+TGG - chr5.2:7126743-7126762 None:intergenic 30.0%
CACTACAAAACAAGACATAA+AGG - chr5.2:7125653-7125672 None:intergenic 30.0%
CAGCAAAAAAATTAGTGGTT+CGG + chr5.2:7126565-7126584 MS.gene09616:intron 30.0%
CATGGTTTATGGAAAAATAC+AGG - chr5.2:7126450-7126469 None:intergenic 30.0%
CGGATCTTGACAAAATATTT+GGG + chr5.2:7126922-7126941 MS.gene09616:intron 30.0%
CTCAAAACAAATTGTGTCAA+AGG + chr5.2:7127691-7127710 MS.gene09616:CDS 30.0%
CTCAACAATTCCACTATATT+TGG - chr5.2:7128762-7128781 None:intergenic 30.0%
CTGATAGTATCTGTGTAATA+TGG + chr5.2:7127171-7127190 MS.gene09616:intron 30.0%
CTTAATAGAGTTACTTGTGT+TGG + chr5.2:7126021-7126040 MS.gene09616:intron 30.0%
GATATTATTAGAGATGGTAC+AGG + chr5.2:7126309-7126328 MS.gene09616:CDS 30.0%
GATCTTGACAAAATATTTGG+GGG + chr5.2:7126924-7126943 MS.gene09616:intron 30.0%
GGATCTTGACAAAATATTTG+GGG + chr5.2:7126923-7126942 MS.gene09616:intron 30.0%
GGTATTTATATTAGATCTGG+GGG + chr5.2:7127192-7127211 MS.gene09616:intron 30.0%
GTATGGGATATTATTAGAGA+TGG + chr5.2:7126303-7126322 MS.gene09616:CDS 30.0%
GTATTTATATTAGATCTGGG+GGG + chr5.2:7127193-7127212 MS.gene09616:intron 30.0%
TATGGATTTCTTGGAACTAA+TGG - chr5.2:7128245-7128264 None:intergenic 30.0%
TGAAGAAAAAAGAGATGGAA+GGG + chr5.2:7127085-7127104 MS.gene09616:intron 30.0%
TTCTCTATTGTTTCAATCAG+TGG + chr5.2:7126899-7126918 MS.gene09616:intron 30.0%
TTTATGTATGTTATGGTGCA+GGG + chr5.2:7128570-7128589 MS.gene09616:intron 30.0%
! ACATAAAACAAAGTGTTACC+TGG - chr5.2:7125475-7125494 None:intergenic 30.0%
! GCTGATATCATATGATAATG+TGG - chr5.2:7126549-7126568 None:intergenic 30.0%
! TAATTTTCTGCTAATTGGCA+GGG + chr5.2:7125553-7125572 MS.gene09616:intron 30.0%
! TTAATTTTCTGCTAATTGGC+AGG + chr5.2:7125552-7125571 MS.gene09616:intron 30.0%
! TTTTATGTATGTTATGGTGC+AGG + chr5.2:7128569-7128588 MS.gene09616:intron 30.0%
!! AAAATGGACTATCAATACCA+AGG + chr5.2:7128661-7128680 MS.gene09616:CDS 30.0%
!! AAATGGACTATCAATACCAA+GGG + chr5.2:7128662-7128681 MS.gene09616:CDS 30.0%
!! TGAAGTTGTTTTGCGTTATT+TGG - chr5.2:7127124-7127143 None:intergenic 30.0%
!! TTGATAGTGCAAACAAGTAT+GGG + chr5.2:7126287-7126306 MS.gene09616:CDS 30.0%
!!! TCGGTTTTAATGTGTCATTT+TGG + chr5.2:7127483-7127502 MS.gene09616:intron 30.0%
!!! TCGGTTTTTATGTGTCATTT+CGG + chr5.2:7126853-7126872 MS.gene09616:intron 30.0%
AAGTCATACATTTCCTCAGA+TGG + chr5.2:7126361-7126380 MS.gene09616:CDS 35.0%
AATGACATGTGTCAGTATTG+CGG - chr5.2:7126801-7126820 None:intergenic 35.0%
ACACCAGTTTAGAAATTGGA+AGG + chr5.2:7125812-7125831 MS.gene09616:intron 35.0%
AGATGTGTGTTTATGTTCAC+AGG + chr5.2:7127586-7127605 MS.gene09616:intron 35.0%
AGTACTATATAAGGCACAAG+TGG + chr5.2:7128382-7128401 MS.gene09616:CDS 35.0%
AGTGTTTATCCTTCTTAGAG+TGG + chr5.2:7126404-7126423 MS.gene09616:intron 35.0%
ATCAGAAATATCAGCAGTGT+TGG + chr5.2:7127760-7127779 MS.gene09616:CDS 35.0%
ATCTGAGGAAATGTATGACT+TGG - chr5.2:7126362-7126381 None:intergenic 35.0%
ATTATGCCATAATGCACTGA+TGG + chr5.2:7128541-7128560 MS.gene09616:intron 35.0%
CACTATCAACCTGTAAATGT+CGG - chr5.2:7126276-7126295 None:intergenic 35.0%
CACTGTATCGAAAAACAACT+TGG - chr5.2:7128182-7128201 None:intergenic 35.0%
CGATGGTTACTAGTAACTTA+TGG - chr5.2:7126184-7126203 None:intergenic 35.0%
CTTCATATGATTGAAACCAG+TGG - chr5.2:7127253-7127272 None:intergenic 35.0%
GCGGATCTTGACAAAATATT+TGG + chr5.2:7126921-7126940 MS.gene09616:intron 35.0%
GTGATCAGTAACTACATCTA+CGG - chr5.2:7128802-7128821 None:intergenic 35.0%
TAAAGACTGTACTGTTGTGA+AGG + chr5.2:7125598-7125617 MS.gene09616:CDS 35.0%
TATATAAGGCACAAGTGGAA+TGG + chr5.2:7128387-7128406 MS.gene09616:CDS 35.0%
TATCGAAAAACAACTTGGGA+CGG - chr5.2:7128177-7128196 None:intergenic 35.0%
TATTAGTAGATGCAAGGACA+GGG + chr5.2:7128120-7128139 MS.gene09616:CDS 35.0%
TCTATTGTTTCAATCAGTGG+CGG + chr5.2:7126902-7126921 MS.gene09616:intron 35.0%
TGTGTCTATTAGTAGATGCA+AGG + chr5.2:7128114-7128133 MS.gene09616:CDS 35.0%
TTCTATGTCAGAAATCCTTC+AGG + chr5.2:7128723-7128742 MS.gene09616:CDS 35.0%
TTGCTTCCAATAGAAAGTCT+TGG - chr5.2:7128906-7128925 None:intergenic 35.0%
TTTCTATTGGAAGCAAGCTA+TGG + chr5.2:7128910-7128929 MS.gene09616:CDS 35.0%
! AAAGGAATTCCACTCTAAGA+AGG - chr5.2:7126416-7126435 None:intergenic 35.0%
! ATTTTCACTATTACTCGACG+AGG - chr5.2:7128865-7128884 None:intergenic 35.0%
! CTGCTGATATTTCTGATAGT+AGG - chr5.2:7127757-7127776 None:intergenic 35.0%
! TGTATGACTTGGAAATGATG+AGG - chr5.2:7126351-7126370 None:intergenic 35.0%
! TGTGTTGGTATTGTGTTAAG+AGG + chr5.2:7126036-7126055 MS.gene09616:intron 35.0%
!! ATTGTGTTAAGAGGTATCAG+AGG + chr5.2:7126045-7126064 MS.gene09616:intron 35.0%
!! GTTGATAGTGCAAACAAGTA+TGG + chr5.2:7126286-7126305 MS.gene09616:CDS 35.0%
!! TCTTGCAGGAGTACTATATA+AGG + chr5.2:7128373-7128392 MS.gene09616:intron 35.0%
!! TTTGGTGTTTATGTCGTGTT+CGG + chr5.2:7127501-7127520 MS.gene09616:intron 35.0%
AAACCACCATCAGTGCATTA+TGG - chr5.2:7128550-7128569 None:intergenic 40.0%
ACTCGTGTGATTCGTGAAAA+TGG + chr5.2:7128645-7128664 MS.gene09616:CDS 40.0%
AGGTTGAGAAACTTTGCTAC+CGG + chr5.2:7127971-7127990 MS.gene09616:CDS 40.0%
ATGTTATGGTGCAGGGTTTA+AGG + chr5.2:7128577-7128596 MS.gene09616:intron 40.0%
ATTAGTAGATGCAAGGACAG+GGG + chr5.2:7128121-7128140 MS.gene09616:CDS 40.0%
CAAGATGATATGTGGTGTGT+TGG + chr5.2:7126988-7127007 MS.gene09616:intron 40.0%
CAGAGGCTACAAAATCACAA+TGG - chr5.2:7125944-7125963 None:intergenic 40.0%
CATATGATTGAAACCAGTGG+CGG - chr5.2:7127250-7127269 None:intergenic 40.0%
CGATACAGTGTGTGTACTTA+GGG + chr5.2:7128192-7128211 MS.gene09616:CDS 40.0%
CTATTAGTAGATGCAAGGAC+AGG + chr5.2:7128119-7128138 MS.gene09616:CDS 40.0%
CTCTTCTACGTAAAGAATGC+AGG - chr5.2:7127843-7127862 None:intergenic 40.0%
CTGCATTCTTTACGTAGAAG+AGG + chr5.2:7127841-7127860 MS.gene09616:CDS 40.0%
GAATTGTTGAGACAAGAGTG+TGG + chr5.2:7128771-7128790 MS.gene09616:CDS 40.0%
GATACGCCAAGACTTTCTAT+TGG + chr5.2:7128897-7128916 MS.gene09616:CDS 40.0%
GATGGGAAGAGACAAAAAAG+TGG - chr5.2:7127335-7127354 None:intergenic 40.0%
GATTTGTCGTGATTTCACAG+AGG - chr5.2:7125961-7125980 None:intergenic 40.0%
GGACACACCAGTTTAGAAAT+TGG + chr5.2:7125808-7125827 MS.gene09616:intron 40.0%
GGATTTCTTGGAACTAATGG+CGG - chr5.2:7128242-7128261 None:intergenic 40.0%
GTGCCTTCCAATTTCTAAAC+TGG - chr5.2:7125818-7125837 None:intergenic 40.0%
TACATTGATCCATGTCTTGC+AGG + chr5.2:7128359-7128378 MS.gene09616:intron 40.0%
TATAGTACTCCTGCAAGACA+TGG - chr5.2:7128371-7128390 None:intergenic 40.0%
TCAATACCAAGGGTTGAGAT+TGG + chr5.2:7128672-7128691 MS.gene09616:CDS 40.0%
TCATACATTTCCTCAGATGG+TGG + chr5.2:7126364-7126383 MS.gene09616:CDS 40.0%
TCGATACAGTGTGTGTACTT+AGG + chr5.2:7128191-7128210 MS.gene09616:CDS 40.0%
TGAATGTTGCCGACATTTAC+AGG + chr5.2:7126264-7126283 MS.gene09616:intron 40.0%
TGTTATGGTGCAGGGTTTAA+GGG + chr5.2:7128578-7128597 MS.gene09616:intron 40.0%
TTCACAAAAAATGGCCATGC+AGG - chr5.2:7127056-7127075 None:intergenic 40.0%
! AAAACAAAGTGTTACCTGGC+TGG - chr5.2:7125471-7125490 None:intergenic 40.0%
! AAGCTTTTCCCTCTCACTTT+GGG - chr5.2:7128427-7128446 None:intergenic 40.0%
! ATCACAAAAAGGGGTGTGAT+GGG + chr5.2:7128086-7128105 MS.gene09616:CDS 40.0%
! GATATTTCTGATAGTAGGCC+TGG - chr5.2:7127752-7127771 None:intergenic 40.0%
! GGATACCACCTTTTGATCAA+CGG + chr5.2:7127023-7127042 MS.gene09616:intron 40.0%
! TAAGCTTTTCCCTCTCACTT+TGG - chr5.2:7128428-7128447 None:intergenic 40.0%
! TATGTCCTCTTTTGCTCTTG+TGG - chr5.2:7127621-7127640 None:intergenic 40.0%
!! TTAAGAGGTATCAGAGGTGT+TGG + chr5.2:7126051-7126070 MS.gene09616:intron 40.0%
ACCAGTTAATGTATGCCGAC+AGG + chr5.2:7128020-7128039 MS.gene09616:CDS 45.0%
ACTATTACTCGACGAGGAAG+AGG - chr5.2:7128859-7128878 None:intergenic 45.0%
AGCAAGCTATGGTCTCAGAT+AGG + chr5.2:7128921-7128940 MS.gene09616:CDS 45.0%
AGGGAGAAAGGAACAATGTG+AGG + chr5.2:7127951-7127970 MS.gene09616:CDS 45.0%
AGTAGCGGCGATCACAAAAA+GGG + chr5.2:7128076-7128095 MS.gene09616:CDS 45.0%
ATGTGCCACAAGAGCAAAAG+AGG + chr5.2:7127613-7127632 MS.gene09616:CDS 45.0%
CAAGAAATCCATAGCCGATC+AGG + chr5.2:7128252-7128271 MS.gene09616:CDS 45.0%
CATAAACCATCCACCATCTG+AGG - chr5.2:7126377-7126396 None:intergenic 45.0%
CCAGTTAATGTATGCCGACA+GGG + chr5.2:7128021-7128040 MS.gene09616:CDS 45.0%
CCTCATGCACCAAATTGAGA+AGG + chr5.2:7126681-7126700 MS.gene09616:CDS 45.0%
CTGAAAGATTACATCCAGCC+AGG + chr5.2:7125454-7125473 MS.gene09616:CDS 45.0%
CTGATCGGCTATGGATTTCT+TGG - chr5.2:7128254-7128273 None:intergenic 45.0%
GACTCGAACCGTTGATCAAA+AGG - chr5.2:7127034-7127053 None:intergenic 45.0%
GATGATGAAGCAGAACTCCA+AGG + chr5.2:7127641-7127660 MS.gene09616:CDS 45.0%
GATGTTCGAGAAAGCTTACG+AGG - chr5.2:7128831-7128850 None:intergenic 45.0%
GGTTGAGAAACTTTGCTACC+GGG + chr5.2:7127972-7127991 MS.gene09616:CDS 45.0%
GGTTTCACTTCTTGACCTGA+AGG - chr5.2:7128741-7128760 None:intergenic 45.0%
GTCAAAGGAGAACACAGCAT+TGG + chr5.2:7127706-7127725 MS.gene09616:CDS 45.0%
GTCATATCTAATGTCCGCGT+CGG - chr5.2:7125855-7125874 None:intergenic 45.0%
TCGAACCGTTGATCAAAAGG+TGG - chr5.2:7127031-7127050 None:intergenic 45.0%
TCTCAGAACCCAAAGTGAGA+GGG + chr5.2:7128416-7128435 MS.gene09616:CDS 45.0%
TGTATGACACTGACACACGT+TGG - chr5.2:7126774-7126793 None:intergenic 45.0%
TTAGTAGATGCAAGGACAGG+GGG + chr5.2:7128122-7128141 MS.gene09616:CDS 45.0%
! AACACAGCATTGGAGATGAG+TGG + chr5.2:7127716-7127735 MS.gene09616:CDS 45.0%
! ACACAGCATTGGAGATGAGT+GGG + chr5.2:7127717-7127736 MS.gene09616:CDS 45.0%
! ATGAAGTACCTGATCGGCTA+TGG - chr5.2:7128263-7128282 None:intergenic 45.0%
! ATGCCATAATGCACTGATGG+TGG + chr5.2:7128544-7128563 MS.gene09616:intron 45.0%
! CGGTTCTGATACAAGTTGTG+TGG + chr5.2:7126585-7126604 MS.gene09616:intron 45.0%
! GATCACAAAAAGGGGTGTGA+TGG + chr5.2:7128085-7128104 MS.gene09616:CDS 45.0%
! GTGACGATGAAGTACCTGAT+CGG - chr5.2:7128269-7128288 None:intergenic 45.0%
! TTGTTGAGACAAGAGTGTGG+TGG + chr5.2:7128774-7128793 MS.gene09616:CDS 45.0%
!! ACATTTCCTCAGATGGTGGA+TGG + chr5.2:7126368-7126387 MS.gene09616:CDS 45.0%
!! CCTTCTCAATTTGGTGCATG+AGG - chr5.2:7126684-7126703 None:intergenic 45.0%
!! CTCAGATGGTGGATGGTTTA+TGG + chr5.2:7126375-7126394 MS.gene09616:CDS 45.0%
!! GATGGTGGATGGTTTATGGA+CGG + chr5.2:7126379-7126398 MS.gene09616:CDS 45.0%
!! GTGTGTTGGTTCATAGTGCT+TGG + chr5.2:7127002-7127021 MS.gene09616:intron 45.0%
!! TAGAAGAGGCATCCAAACCT+GGG + chr5.2:7127855-7127874 MS.gene09616:CDS 45.0%
!! TTCGGTGTTGATGTCGTGTT+TGG + chr5.2:7126871-7126890 MS.gene09616:intron 45.0%
AACCGTCTTGGGTCCCTAAT+GGG - chr5.2:7127881-7127900 None:intergenic 50.0%
AGGGTTGAGATTGGAATGCG+AGG + chr5.2:7128681-7128700 MS.gene09616:CDS 50.0%
ATAAAGCACAGACACCGACG+CGG + chr5.2:7125838-7125857 MS.gene09616:intron 50.0%
ATCCAAACCTGGGCCCATTA+GGG + chr5.2:7127865-7127884 MS.gene09616:CDS 50.0%
ATGAGTGGGATGGATAGACC+AGG + chr5.2:7127731-7127750 MS.gene09616:CDS 50.0%
ATGCGAGGAGATGATGTGGT+AGG + chr5.2:7128696-7128715 MS.gene09616:CDS 50.0%
CAATGCAGTGTTCCACGTCA+CGG + chr5.2:7126627-7126646 MS.gene09616:intron 50.0%
CAGGCAAGAAACTCACTGAC+AGG + chr5.2:7126656-7126675 MS.gene09616:CDS 50.0%
CAGTAGCGGCGATCACAAAA+AGG + chr5.2:7128075-7128094 MS.gene09616:CDS 50.0%
CCCTGTCGGCATACATTAAC+TGG - chr5.2:7128024-7128043 None:intergenic 50.0%
CGCATTCCAATCTCAACCCT+TGG - chr5.2:7128681-7128700 None:intergenic 50.0%
CTCCAGCTGTTCCTTTACCT+GGG - chr5.2:7127906-7127925 None:intergenic 50.0%
CTCTCAGAACCCAAAGTGAG+AGG + chr5.2:7128415-7128434 MS.gene09616:CDS 50.0%
CTGCAATGTCACCTCAGCAA+CGG + chr5.2:7127793-7127812 MS.gene09616:CDS 50.0%
GACATGTGCCAGTGTTGTGT+CGG - chr5.2:7127428-7127447 None:intergenic 50.0%
GTAGCGGCGATCACAAAAAG+GGG + chr5.2:7128077-7128096 MS.gene09616:CDS 50.0%
GTCATACACCGACACAACAC+TGG + chr5.2:7127417-7127436 MS.gene09616:intron 50.0%
GTGAATATTCTGCGCAGCCT+TGG - chr5.2:7127661-7127680 None:intergenic 50.0%
TAACTGGTGAAGCCGTCGTT+CGG - chr5.2:7128008-7128027 None:intergenic 50.0%
TATGCCGACAGGGACTATGA+GGG + chr5.2:7128031-7128050 MS.gene09616:CDS 50.0%
TCCTTTCTCCCTTCTCACCA+CGG - chr5.2:7127943-7127962 None:intergenic 50.0%
TCTCCAGCTGTTCCTTTACC+TGG - chr5.2:7127907-7127926 None:intergenic 50.0%
TGGAATGCGAGGAGATGATG+TGG + chr5.2:7128692-7128711 MS.gene09616:CDS 50.0%
TTCAATTTCCGCTGCGACAC+AGG + chr5.2:7127140-7127159 MS.gene09616:intron 50.0%
! AGCATTGGAGATGAGTGGGA+TGG + chr5.2:7127721-7127740 MS.gene09616:CDS 50.0%
!! AAACCAGTGGCGGATCTTCT+TGG - chr5.2:7127240-7127259 None:intergenic 50.0%
!! AACCAGTGGCGGATCTTCTT+GGG - chr5.2:7127239-7127258 None:intergenic 50.0%
!! ATGCAAGGACAGGGGGTATT+GGG + chr5.2:7128129-7128148 MS.gene09616:CDS 50.0%
!! GGTGGTGAACTTGGTGTGTA+GGG + chr5.2:7128150-7128169 MS.gene09616:CDS 50.0%
!! GTAGAAGAGGCATCCAAACC+TGG + chr5.2:7127854-7127873 MS.gene09616:CDS 50.0%
AAGTTGTGCCTGTGTCGCAG+CGG - chr5.2:7127151-7127170 None:intergenic 55.0%
ACAGCCCTCATAGTCCCTGT+CGG - chr5.2:7128038-7128057 None:intergenic 55.0%
ATGTCACCTCAGCAACGGCA+TGG + chr5.2:7127798-7127817 MS.gene09616:CDS 55.0%
ATTAGATCTGGGGGGAGCCA+TGG + chr5.2:7127201-7127220 MS.gene09616:intron 55.0%
CAACCGTCTTGGGTCCCTAA+TGG - chr5.2:7127882-7127901 None:intergenic 55.0%
CATCCAAACCTGGGCCCATT+AGG + chr5.2:7127864-7127883 MS.gene09616:CDS 55.0%
CATTAGGGACCCAAGACGGT+TGG + chr5.2:7127880-7127899 MS.gene09616:CDS 55.0%
CCTTTCTCCCTTCTCACCAC+GGG - chr5.2:7127942-7127961 None:intergenic 55.0%
GCAGGCTACCCTTCCATTGT+GGG - chr5.2:7127825-7127844 None:intergenic 55.0%
GCTTGTCACGGAGACAGTAG+CGG + chr5.2:7128061-7128080 MS.gene09616:CDS 55.0%
GGCATGGACCCACAATGGAA+GGG + chr5.2:7127814-7127833 MS.gene09616:CDS 55.0%
GTATGCCGACAGGGACTATG+AGG + chr5.2:7128030-7128049 MS.gene09616:CDS 55.0%
TCAACGGTTCGAGTCCTGCA+TGG + chr5.2:7127039-7127058 MS.gene09616:intron 55.0%
TGCAGGCTACCCTTCCATTG+TGG - chr5.2:7127826-7127845 None:intergenic 55.0%
TTACCTGGGCCAACCGTCTT+GGG - chr5.2:7127892-7127911 None:intergenic 55.0%
TTCCACGTCACGGATCAAGC+AGG + chr5.2:7126637-7126656 MS.gene09616:CDS 55.0%
TTTACCTGGGCCAACCGTCT+TGG - chr5.2:7127893-7127912 None:intergenic 55.0%
! AAGACGGTTGGCCCAGGTAA+AGG + chr5.2:7127892-7127911 MS.gene09616:CDS 55.0%
! GATGCAAGGACAGGGGGTAT+TGG + chr5.2:7128128-7128147 MS.gene09616:CDS 55.0%
!! GGAACAGCTGGAGAGTGTTG+TGG + chr5.2:7127913-7127932 MS.gene09616:CDS 55.0%
!! GGGGTATTGGGTGGTGAACT+TGG + chr5.2:7128141-7128160 MS.gene09616:CDS 55.0%
!! GGGTGGTGAACTTGGTGTGT+AGG + chr5.2:7128149-7128168 MS.gene09616:CDS 55.0%
CCCGTGGTGAGAAGGGAGAA+AGG + chr5.2:7127939-7127958 MS.gene09616:CDS 60.0%
CGGATCTTCTTGGGAGCCCA+TGG - chr5.2:7127230-7127249 None:intergenic 60.0%
CGGCATGGACCCACAATGGA+AGG + chr5.2:7127813-7127832 MS.gene09616:CDS 60.0%
CTCCCAAGAAGATCCGCCAC+TGG + chr5.2:7127234-7127253 MS.gene09616:intron 60.0%
GCAACGGCATGGACCCACAA+TGG + chr5.2:7127809-7127828 MS.gene09616:CDS 60.0%
GGCCCAGGTAAAGGAACAGC+TGG + chr5.2:7127901-7127920 MS.gene09616:CDS 60.0%
GGCCCATTAGGGACCCAAGA+CGG + chr5.2:7127876-7127895 MS.gene09616:CDS 60.0%
GTGGTGACCCGTGGTGAGAA+GGG + chr5.2:7127932-7127951 MS.gene09616:CDS 60.0%
TGCCTGCTTGATCCGTGACG+TGG - chr5.2:7126642-7126661 None:intergenic 60.0%
TGTGGTGACCCGTGGTGAGA+AGG + chr5.2:7127931-7127950 MS.gene09616:CDS 60.0%
TTGGGAGCCCATGGTAGCCA+TGG - chr5.2:7127221-7127240 None:intergenic 60.0%
! GTCCCTAATGGGCCCAGGTT+TGG - chr5.2:7127870-7127889 None:intergenic 60.0%
!! CAAGGACAGGGGGTATTGGG+TGG + chr5.2:7128132-7128151 MS.gene09616:CDS 60.0%
!! GAGAGTGTTGTGGTGACCCG+TGG + chr5.2:7127923-7127942 MS.gene09616:CDS 60.0%
GAGGGCTGTCGCGCTTGTCA+CGG + chr5.2:7128049-7128068 MS.gene09616:CDS 65.0%
GGCGCACACACACCGAACGA+CGG + chr5.2:7127993-7128012 MS.gene09616:CDS 65.0%
GGGGGAGCCATGGCTACCAT+GGG + chr5.2:7127211-7127230 MS.gene09616:intron 65.0%
GTGGGTCCATGCCGTTGCTG+AGG - chr5.2:7127807-7127826 None:intergenic 65.0%
! CTTGGGTCCCTAATGGGCCC+AGG - chr5.2:7127875-7127894 None:intergenic 65.0%
!! TCGTTCGGTGTGTGTGCGCC+CGG - chr5.2:7127993-7128012 None:intergenic 65.0%
GGGGGGAGCCATGGCTACCA+TGG + chr5.2:7127210-7127229 MS.gene09616:intron 70.0%
! GGACCCAAGACGGTTGGCCC+AGG + chr5.2:7127886-7127905 MS.gene09616:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 7125405 7128980 7125405 ID=MS.gene09616
chr5.2 mRNA 7125405 7128980 7125405 ID=MS.gene09616.t1;Parent=MS.gene09616
chr5.2 exon 7125405 7125475 7125405 ID=MS.gene09616.t1.exon1;Parent=MS.gene09616.t1
chr5.2 CDS 7125405 7125475 7125405 ID=cds.MS.gene09616.t1;Parent=MS.gene09616.t1
chr5.2 exon 7125574 7125619 7125574 ID=MS.gene09616.t1.exon2;Parent=MS.gene09616.t1
chr5.2 CDS 7125574 7125619 7125574 ID=cds.MS.gene09616.t1;Parent=MS.gene09616.t1
chr5.2 exon 7126286 7126400 7126286 ID=MS.gene09616.t1.exon3;Parent=MS.gene09616.t1
chr5.2 CDS 7126286 7126400 7126286 ID=cds.MS.gene09616.t1;Parent=MS.gene09616.t1
chr5.2 exon 7126635 7126702 7126635 ID=MS.gene09616.t1.exon4;Parent=MS.gene09616.t1
chr5.2 CDS 7126635 7126702 7126635 ID=cds.MS.gene09616.t1;Parent=MS.gene09616.t1
chr5.2 exon 7127608 7128273 7127608 ID=MS.gene09616.t1.exon5;Parent=MS.gene09616.t1
chr5.2 CDS 7127608 7128273 7127608 ID=cds.MS.gene09616.t1;Parent=MS.gene09616.t1
chr5.2 exon 7128381 7128488 7128381 ID=MS.gene09616.t1.exon6;Parent=MS.gene09616.t1
chr5.2 CDS 7128381 7128488 7128381 ID=cds.MS.gene09616.t1;Parent=MS.gene09616.t1
chr5.2 exon 7128591 7128980 7128591 ID=MS.gene09616.t1.exon7;Parent=MS.gene09616.t1
chr5.2 CDS 7128591 7128980 7128591 ID=cds.MS.gene09616.t1;Parent=MS.gene09616.t1
Gene Sequence

>MS.gene09616

ATGGACACAGTTTTTCATTCTCGTGTTGATAGAGAGATTGAAACACTTACTGAAAGATTACATCCAGCCAGGTAACACTTTGTTTTATGTGATTATTTATATTCCGATTAGTTAATTAATTATGTAGATTACTTTATCAGTACGTAATTAATTTTCTGCTAATTGGCAGGGTTTGTATAGACAATAATGCTTGTAAAGACTGTACTGTTGTGAAGGTTCGATACAATTCTCTAATTTTTTTAATTCCTTTATGTCTTGTTTTGTAGTGATCTTGCAAAGTTCAAAATAAATCATGCCTCTTTTGTATATAGAAATTTAATTTAGCTGGTATTCTCTGAAAATGACGTCATCCTGTATTAGTATTAAAACTAAAGTCGGTTTATTCATAAAATATAACAAAAAAGGACACACCAGTTTAGAAATTGGAAGGCACATAAAGCACAGACACCGACGCGGACATTAGATATGACTTCGACACCAATAGCAATTTGAGAAAATAACACTATTTACCTTATGTTTAAGATCTTGTTAGGTGTCCATTGTGATTTTGTAGCCTCTGTGAAATCACGACAAATCACTTTGATTTAGATATAACTATCGTGATACTAAACATAAACTTAATAGAGTTACTTGTGTTGGTATTGTGTTAAGAGGTATCAGAGGTGTTGGACACCAAACACGTTTTTTTATCAGAAGTGTTAGTGTTACAACATAATATATTATACATTTGTACCTAATTATAACAACAAAAAAAAAGTTGCTAAAGAGGTTAGTAACCATAAGTTACTAGTAACCATCGCATTTTGACTTAATTTTCTTATGAAAAGTAACAATTATTTAATTATAATGACAATTGTATTGAATGTTGCCGACATTTACAGGTTGATAGTGCAAACAAGTATGGGATATTATTAGAGATGGTACAGGTGTTGACAGATCTTGACCTCATCATTTCCAAGTCATACATTTCCTCAGATGGTGGATGGTTTATGGACGGTCAGTGTTTATCCTTCTTAGAGTGGAATTCCTTTAACATTGTTTTCCTGTATTTTTCCATAAACCATGATAATGATAATTGATCAATTTATGATTAAAAAAAAAGCTTACTTTTATCATGTTTTTTGAGCTATTATTATGACTACCACATTATCATATGATATCAGCAAAAAAATTAGTGGTTCGGTTCTGATACAAGTTGTGTGGTGCGTCTCTTTTTGTTACACAATGCAGTGTTCCACGTCACGGATCAAGCAGGCAAGAAACTCACTGACAGGAACCTCATGCACCAAATTGAGAAGGTTTTTTTGTCTCTTCCTATCAATAAAATATTTTCTACCATACTTCTGATTGAATATGTGTCAAGTGTCCAACGTGTGTCAGTGTCATACATCGACCGCAATACTGACACATGTCATTACAGTCAATTACATCATTTTCTTAGATAATTATCGGTTTTTATGTGTCATTTCGGTGTTGATGTCGTGTTTGGTGTGTTTCTCTATTGTTTCAATCAGTGGCGGATCTTGACAAAATATTTGGGGGGAGCCAAATATTTGTTACATATATATATAAGTTTTTTCAAACAAGATGATATGTGGTGTGTTGGTTCATAGTGCTTGGATACCACCTTTTGATCAACGGTTCGAGTCCTGCATGGCCATTTTTTGTGAAATAAAAATATGAAGAAAAAAGAGATGGAAGGGATCGAACTCACGACCAAATAACGCAAAACAACTTCAATTTCCGCTGCGACACAGGCACAACTTCTGATAGTATCTGTGTAATATGGTATTTATATTAGATCTGGGGGGAGCCATGGCTACCATGGGCTCCCAAGAAGATCCGCCACTGGTTTCAATCATATGAAGTAACTAATTCAATTATATGAAATTAAAACAGATGTGTTTATGTTCATAGGAACTATGTGCCACTTTTTTGTCTCTTCCCATCAATAAAATATTTTGTACCATACTTATGATTGAATGTGTATCTAGTGTCCAACGTGTGTCAGTGTCATACACCGACACAACACTGGCACATGTCATTACAGTCAATTATATCATTTTCTCAGAAAATTATCGGTTTTAATGTGTCATTTTGGTGTTTATGTCGTGTTCGGTGTGTTTCTCTATTGTTTCAATCATATGAAGTAACTAATTCAATTATATGAAATTAAACAGAAGATGTGTGTTTATGTTCACAGGAACTATGTGCCACAAGAGCAAAAGAGGACATAGATGATGAAGCAGAACTCCAAGGCTGCGCAGAATATTCACAGTCAAAATACTCAAAACAAATTGTGTCAAAGGAGAACACAGCATTGGAGATGAGTGGGATGGATAGACCAGGCCTACTATCAGAAATATCAGCAGTGTTGGTGAACATGAGCTGCAATGTCACCTCAGCAACGGCATGGACCCACAATGGAAGGGTAGCCTGCATTCTTTACGTAGAAGAGGCATCCAAACCTGGGCCCATTAGGGACCCAAGACGGTTGGCCCAGGTAAAGGAACAGCTGGAGAGTGTTGTGGTGACCCGTGGTGAGAAGGGAGAAAGGAACAATGTGAGGTTGAGAAACTTTGCTACCGGGCGCACACACACCGAACGACGGCTTCACCAGTTAATGTATGCCGACAGGGACTATGAGGGCTGTCGCGCTTGTCACGGAGACAGTAGCGGCGATCACAAAAAGGGGTGTGATGGGACTCATGTGTCTATTAGTAGATGCAAGGACAGGGGGTATTGGGTGGTGAACTTGGTGTGTAGGGACCGTCCCAAGTTGTTTTTCGATACAGTGTGTGTACTTAGGGACATGCAGTATGTAGTGTTTCATGCCGCCATTAGTTCCAAGAAATCCATAGCCGATCAGGTACTTCATCGTCACTTTACAAGTCGATTTTATAATAAAGTTGAGTTAAAGTCAAACTATAATAAACGATGAATCCGTCATTAATTACATTGATCCATGTCTTGCAGGAGTACTATATAAGGCACAAGTGGAATGGTTTAGCTCTCAGAACCCAAAGTGAGAGGGAAAAGCTTATCTTATGCATAATAGCTGCAATAGAGCGTAGAGTGTCGCATGTAAGTCCTATAAAACCTAGCATTAAGATTTTCCTTTTTATGTATCCTTATTATTATGCCATAATGCACTGATGGTGGTTTTTTATGTATGTTATGGTGCAGGGTTTAAGGGTTGATATTTGCACTGAAAATAAAACAGGTTTATTATCGAAAGTGACTCGTGTGATTCGTGAAAATGGACTATCAATACCAAGGGTTGAGATTGGAATGCGAGGAGATGATGTGGTAGGAACATTCTATGTCAGAAATCCTTCAGGTCAAGAAGTGAAACCAAATATAGTGGAATTGTTGAGACAAGAGTGTGGTGGATCCGTAGATGTAGTTACTGATCACAAAGCGCCTCGTAAGCTTTCTCGAACATCATCTTCCTCTTCCTCGTCGAGTAATAGTGAAAATAGTAGTATAGAGGATACGCCAAGACTTTCTATTGGAAGCAAGCTATGGTCTCAGATAGGAAAGATTTCAAGCAACCTTAGCCCCATTAAATCGTGA
Protein sequence

>MS.gene09616.t1

MDTVFHSRVDREIETLTERLHPARVCIDNNACKDCTVVKVDSANKYGILLEMVQVLTDLDLIISKSYISSDGGWFMDVFHVTDQAGKKLTDRNLMHQIEKELCATRAKEDIDDEAELQGCAEYSQSKYSKQIVSKENTALEMSGMDRPGLLSEISAVLVNMSCNVTSATAWTHNGRVACILYVEEASKPGPIRDPRRLAQVKEQLESVVVTRGEKGERNNVRLRNFATGRTHTERRLHQLMYADRDYEGCRACHGDSSGDHKKGCDGTHVSISRCKDRGYWVVNLVCRDRPKLFFDTVCVLRDMQYVVFHAAISSKKSIADQEYYIRHKWNGLALRTQSEREKLILCIIAAIERRVSHGLRVDICTENKTGLLSKVTRVIRENGLSIPRVEIGMRGDDVVGTFYVRNPSGQEVKPNIVELLRQECGGSVDVVTDHKAPRKLSRTSSSSSSSSNSENSSIEDTPRLSIGSKLWSQIGKISSNLSPIKS