Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22870.t1 | XP_003626476.1 | 93.3 | 689 | 15 | 2 | 27 | 684 | 77 | 765 | 0.00E+00 | 1216.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22870.t1 | Q9ZTP3 | 55.0 | 700 | 270 | 6 | 27 | 682 | 68 | 766 | 2.4e-199 | 696.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22870.t1 | G7L2X0 | 93.3 | 689 | 15 | 2 | 27 | 684 | 77 | 765 | 0.0e+00 | 1216.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22870.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050576 | MS.gene22870 | 0.98049 | 2.44E-150 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052918 | MS.gene22870 | PPI |
| MS.gene048848 | MS.gene22870 | PPI |
| MS.gene55723 | MS.gene22870 | PPI |
| MS.gene053421 | MS.gene22870 | PPI |
| MS.gene63969 | MS.gene22870 | PPI |
| MS.gene048849 | MS.gene22870 | PPI |
| MS.gene22870 | MS.gene048847 | PPI |
| MS.gene048846 | MS.gene22870 | PPI |
| MS.gene013718 | MS.gene22870 | PPI |
| MS.gene51452 | MS.gene22870 | PPI |
| MS.gene004757 | MS.gene22870 | PPI |
| MS.gene048850 | MS.gene22870 | PPI |
| MS.gene32142 | MS.gene22870 | PPI |
| MS.gene90940 | MS.gene22870 | PPI |
| MS.gene02623 | MS.gene22870 | PPI |
| MS.gene030357 | MS.gene22870 | PPI |
| MS.gene90941 | MS.gene22870 | PPI |
| MS.gene02513 | MS.gene22870 | PPI |
| MS.gene073869 | MS.gene22870 | PPI |
| MS.gene65517 | MS.gene22870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22870.t1 | MTR_7g116330 | 93.324 | 689 | 15 | 2 | 27 | 684 | 77 | 765 | 0.0 | 1308 |
| MS.gene22870.t1 | MTR_1g079790 | 69.553 | 693 | 174 | 6 | 28 | 684 | 71 | 762 | 0.0 | 948 |
| MS.gene22870.t1 | MTR_1g073840 | 55.380 | 697 | 269 | 7 | 21 | 680 | 66 | 757 | 0.0 | 768 |
| MS.gene22870.t1 | MTR_1g044210 | 51.003 | 698 | 296 | 9 | 21 | 677 | 65 | 757 | 0.0 | 698 |
| MS.gene22870.t1 | MTR_1g079790 | 69.826 | 517 | 120 | 5 | 28 | 509 | 71 | 586 | 0.0 | 695 |
| MS.gene22870.t1 | MTR_4g031150 | 36.936 | 731 | 393 | 14 | 3 | 679 | 67 | 783 | 2.48e-140 | 430 |
| MS.gene22870.t1 | MTR_7g109150 | 35.526 | 608 | 299 | 14 | 8 | 554 | 23 | 598 | 1.76e-91 | 298 |
| MS.gene22870.t1 | MTR_4g134880 | 53.425 | 73 | 33 | 1 | 609 | 680 | 1 | 73 | 4.89e-20 | 85.1 |
| MS.gene22870.t1 | MTR_8g080770 | 32.877 | 146 | 85 | 4 | 547 | 680 | 717 | 861 | 3.76e-17 | 86.3 |
| MS.gene22870.t1 | MTR_8g080770 | 33.333 | 144 | 83 | 4 | 547 | 678 | 826 | 968 | 4.49e-17 | 86.3 |
| MS.gene22870.t1 | MTR_3g085130 | 35.714 | 126 | 69 | 4 | 557 | 673 | 695 | 817 | 4.24e-15 | 79.7 |
| MS.gene22870.t1 | MTR_3g085130 | 35.714 | 126 | 69 | 4 | 557 | 673 | 905 | 1027 | 6.25e-15 | 79.3 |
| MS.gene22870.t1 | MTR_8g075340 | 35.878 | 131 | 64 | 4 | 553 | 664 | 1024 | 1153 | 2.18e-13 | 74.3 |
| MS.gene22870.t1 | MTR_5g097410 | 33.333 | 126 | 59 | 4 | 560 | 663 | 1076 | 1198 | 1.32e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22870.t1 | AT3G04580 | 59.033 | 703 | 237 | 6 | 27 | 682 | 68 | 766 | 0.0 | 802 |
| MS.gene22870.t1 | AT3G04580 | 59.033 | 703 | 237 | 6 | 27 | 682 | 68 | 766 | 0.0 | 802 |
| MS.gene22870.t1 | AT3G23150 | 49.721 | 718 | 289 | 14 | 21 | 682 | 70 | 771 | 0.0 | 621 |
| MS.gene22870.t1 | AT3G23150 | 58.531 | 422 | 159 | 7 | 21 | 439 | 70 | 478 | 1.04e-153 | 458 |
| MS.gene22870.t1 | AT1G66340 | 37.311 | 729 | 387 | 15 | 3 | 677 | 17 | 729 | 4.44e-141 | 430 |
| MS.gene22870.t1 | AT1G04310 | 42.779 | 547 | 261 | 8 | 31 | 535 | 82 | 618 | 2.75e-135 | 412 |
| MS.gene22870.t1 | AT1G04310 | 42.779 | 547 | 261 | 8 | 31 | 535 | 82 | 618 | 2.75e-135 | 412 |
| MS.gene22870.t1 | AT2G40940 | 36.000 | 575 | 321 | 12 | 8 | 541 | 22 | 590 | 8.56e-95 | 306 |
| MS.gene22870.t1 | AT1G27320 | 29.927 | 137 | 75 | 3 | 557 | 673 | 889 | 1024 | 3.49e-13 | 73.6 |
| MS.gene22870.t1 | AT1G27320 | 27.273 | 154 | 112 | 0 | 285 | 438 | 410 | 563 | 5.37e-11 | 66.6 |
| MS.gene22870.t1 | AT5G35750 | 33.557 | 149 | 69 | 4 | 543 | 663 | 1013 | 1159 | 3.91e-13 | 73.6 |
| MS.gene22870.t1 | AT2G01830 | 35.897 | 117 | 62 | 4 | 557 | 663 | 944 | 1057 | 7.40e-13 | 72.8 |
| MS.gene22870.t1 | AT2G01830 | 35.897 | 117 | 62 | 4 | 557 | 663 | 921 | 1034 | 7.60e-13 | 72.8 |
| MS.gene22870.t1 | AT2G01830 | 35.897 | 117 | 62 | 4 | 557 | 663 | 921 | 1034 | 7.60e-13 | 72.8 |
| MS.gene22870.t1 | AT2G01830 | 35.897 | 117 | 62 | 4 | 557 | 663 | 921 | 1034 | 7.60e-13 | 72.8 |
| MS.gene22870.t1 | AT2G01830 | 35.897 | 117 | 62 | 4 | 557 | 663 | 921 | 1034 | 7.60e-13 | 72.8 |
| MS.gene22870.t1 | AT2G01830 | 35.897 | 117 | 62 | 4 | 557 | 663 | 933 | 1046 | 7.77e-13 | 72.8 |
Find 167 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAATGTTCCATTTAAAT+TGG | 0.194829 | 7.4:+1905645 | MS.gene22870:CDS |
| TGAAGGAATACCAATTTAAA+TGG | 0.204373 | 7.4:-1905655 | None:intergenic |
| CTCTATTTCTGTAAATGATT+TGG | 0.214081 | 7.4:+1906131 | MS.gene22870:CDS |
| TTGGAGTGTACAAAGTATTT+TGG | 0.234119 | 7.4:+1905543 | MS.gene22870:CDS |
| AAGTATAGGCATTGAGTAAA+TGG | 0.235188 | 7.4:-1905711 | None:intergenic |
| ACCATTCAAAATCATCCTTT+TGG | 0.252407 | 7.4:+1908257 | MS.gene22870:CDS |
| CTCAATGCCTATACTTACTA+TGG | 0.275621 | 7.4:+1905718 | MS.gene22870:CDS |
| ACTTCAAAACCATCCATTTC+AGG | 0.281316 | 7.4:-1908291 | None:intergenic |
| GGAAGTTCCAAAGCCGAAAT+TGG | 0.286448 | 7.4:+1908328 | MS.gene22870:CDS |
| CTACTAGCACTATTTAAAAT+TGG | 0.299995 | 7.4:-1907092 | None:intergenic |
| ATCTTATGCTATACTAGTTT+TGG | 0.300114 | 7.4:+1906323 | MS.gene22870:CDS |
| CAAAGCCTTGAGTTCGATTT+CGG | 0.313490 | 7.4:-1906351 | None:intergenic |
| CCGCGAGATTAGGAAGTCTT+TGG | 0.313919 | 7.4:+1905960 | MS.gene22870:CDS |
| TCAAAGGCCAATTTCGGCTT+TGG | 0.315320 | 7.4:-1908335 | None:intergenic |
| GGAAATGTTTCAACTCTAAC+TGG | 0.322814 | 7.4:-1906740 | None:intergenic |
| TGAAAACTCTTCGCCGGATT+CGG | 0.327965 | 7.4:-1906105 | None:intergenic |
| CTTCTTCTCAAGTTTCAATC+AGG | 0.328501 | 7.4:+1908039 | MS.gene22870:CDS |
| GATAAGGATGATAGAAGTTC+TGG | 0.333479 | 7.4:+1906984 | MS.gene22870:CDS |
| AAGTTTAATTTCCAGATAAC+TGG | 0.338812 | 7.4:+1907047 | MS.gene22870:CDS |
| GCAGAGATCCTTGCCTGATA+TGG | 0.347489 | 7.4:+1906845 | MS.gene22870:CDS |
| GGGAACTAGTACCAGTTATC+TGG | 0.355067 | 7.4:-1907058 | None:intergenic |
| CGAAATCGAACTCAAGGCTT+TGG | 0.361339 | 7.4:+1906352 | MS.gene22870:CDS |
| TGTGCCAAACCCAGAGAGTT+TGG | 0.362144 | 7.4:-1908006 | None:intergenic |
| AGGAGGCTAGTTGGCATGTT+AGG | 0.362594 | 7.4:+1905929 | MS.gene22870:CDS |
| CAATAATCAAAGGCCAATTT+CGG | 0.365522 | 7.4:-1908341 | None:intergenic |
| CTGGATATCACCAAACTCTC+TGG | 0.365884 | 7.4:+1907996 | MS.gene22870:CDS |
| GGATCTTCAAATGCCTGAAA+TGG | 0.366381 | 7.4:+1908278 | MS.gene22870:CDS |
| TCATCACCTATTACCATATC+AGG | 0.368786 | 7.4:-1906858 | None:intergenic |
| TGGAATTGGGGCAAGAGGTT+GGG | 0.375142 | 7.4:+1905890 | MS.gene22870:CDS |
| TTGGAATTGGGGCAAGAGGT+TGG | 0.382688 | 7.4:+1905889 | MS.gene22870:CDS |
| TAAGAAGCTGCTTGAGAAGC+TGG | 0.383208 | 7.4:+1908170 | MS.gene22870:CDS |
| GCTGCGAGTAGTGGTGAATC+TGG | 0.386274 | 7.4:+1906216 | MS.gene22870:CDS |
| GCAAAACCGGGCGTTGCAAC+AGG | 0.388211 | 7.4:+1906485 | MS.gene22870:CDS |
| GAAGCAGAATGTGTTGGAAT+TGG | 0.390130 | 7.4:+1905876 | MS.gene22870:CDS |
| AGAAACTTAAAGAGCAAAAC+CGG | 0.390137 | 7.4:+1906472 | MS.gene22870:CDS |
| CCCTCATCGTGGAATGTAGA+TGG | 0.392008 | 7.4:-1906761 | None:intergenic |
| GAGACCTTTGCATTCAATCC+TGG | 0.400066 | 7.4:+1906578 | MS.gene22870:CDS |
| AAATGAGCTCCTTGCCTGGC+TGG | 0.400987 | 7.4:-1906529 | None:intergenic |
| AAGCAGAATGTGTTGGAATT+GGG | 0.402075 | 7.4:+1905877 | MS.gene22870:CDS |
| AAGTGTTTGTGTGTGTATAA+AGG | 0.402755 | 7.4:+1906801 | MS.gene22870:CDS |
| TTAAAATTGGTCCATCTGAA+TGG | 0.402769 | 7.4:-1907079 | None:intergenic |
| TCCTTGCCTGATATGGTAAT+AGG | 0.403180 | 7.4:+1906852 | MS.gene22870:CDS |
| ATTATGCAACTCCAAGGCTT+TGG | 0.407308 | 7.4:-1906022 | None:intergenic |
| GGATGTTGACCCGCGAGATT+AGG | 0.409855 | 7.4:+1905950 | MS.gene22870:CDS |
| CCTCCTTAGGTTCATTGTTG+TGG | 0.420175 | 7.4:-1907121 | None:intergenic |
| GCAGCTCCGAGTGCAGAATC+AGG | 0.421232 | 7.4:-1906198 | None:intergenic |
| CAAGTAACCGCTGTTTCATC+GGG | 0.427661 | 7.4:+1908198 | MS.gene22870:CDS |
| GCATGCAATGATGGCCAGCC+AGG | 0.428498 | 7.4:+1906515 | MS.gene22870:CDS |
| TGTTGAGCTTTCCAAAGCCT+TGG | 0.429033 | 7.4:+1906011 | MS.gene22870:CDS |
| AAGTGCAGAAGAACGCATAA+AGG | 0.432930 | 7.4:+1908374 | MS.gene22870:CDS |
| TGCCTACAGGTGGGAATGAA+TGG | 0.434232 | 7.4:+1908402 | MS.gene22870:CDS |
| AGATGATGGAAGGTAATATC+TGG | 0.435995 | 7.4:+1907977 | MS.gene22870:intron |
| TCTCAAATGAGCTCCTTGCC+TGG | 0.436435 | 7.4:-1906533 | None:intergenic |
| TTGTGTGTGTATAAAGGCTT+TGG | 0.437175 | 7.4:+1906807 | MS.gene22870:CDS |
| GGCACAAAAGCATGCAATGA+TGG | 0.437900 | 7.4:+1906506 | MS.gene22870:CDS |
| TCAAGTAACCGCTGTTTCAT+CGG | 0.439160 | 7.4:+1908197 | MS.gene22870:CDS |
| ATATCTGTTTATGGGATTGA+TGG | 0.441688 | 7.4:+1905478 | None:intergenic |
| ATCACCAAACTCTCTGGGTT+TGG | 0.443024 | 7.4:+1908002 | MS.gene22870:CDS |
| CTGAAGCTTAGGCCCTCCTT+AGG | 0.443209 | 7.4:-1907134 | None:intergenic |
| TAAAATTGGTCCATCTGAAT+GGG | 0.443946 | 7.4:-1907078 | None:intergenic |
| AGTTGCATAATTGTGCGGTT+TGG | 0.452705 | 7.4:+1906034 | MS.gene22870:CDS |
| TCATGAGTTGAAGCCGAATC+CGG | 0.456399 | 7.4:+1906092 | MS.gene22870:CDS |
| CCACCATGAGATGGAGATAG+TGG | 0.458301 | 7.4:+1906377 | MS.gene22870:CDS |
| AGACCTTTGCATTCAATCCT+GGG | 0.459059 | 7.4:+1906579 | MS.gene22870:CDS |
| TTGAAGTTGCAAGGAAGATT+CGG | 0.459346 | 7.4:+1908307 | MS.gene22870:CDS |
| GGATGCCTGATGAGGATAGA+AGG | 0.466923 | 7.4:+1906055 | MS.gene22870:CDS |
| CACTATCTCCATCTCATGGT+GGG | 0.473097 | 7.4:-1906376 | None:intergenic |
| TTTCAAAAGAAGAGGAATCA+AGG | 0.474095 | 7.4:-1905830 | None:intergenic |
| TTGAGGCCTGATTCTGCACT+CGG | 0.474787 | 7.4:+1906192 | MS.gene22870:CDS |
| CTGCGAGTAGTGGTGAATCT+GGG | 0.475786 | 7.4:+1906217 | MS.gene22870:CDS |
| CTGGAAACTTCCTTTGTCGT+TGG | 0.475889 | 7.4:-1906721 | None:intergenic |
| GTTAGAGATAAGAAAGAGCA+AGG | 0.479184 | 7.4:+1906158 | MS.gene22870:CDS |
| CTTGTTTACATTATCATCAT+CGG | 0.480299 | 7.4:-1908139 | None:intergenic |
| TGAAAGTGATACCGCAGATA+AGG | 0.485783 | 7.4:+1906968 | MS.gene22870:intron |
| CAGGCATTTGAAGATCCAAA+AGG | 0.486141 | 7.4:-1908272 | None:intergenic |
| AACTCTCTGGGTTTGGCACA+AGG | 0.491639 | 7.4:+1908009 | MS.gene22870:CDS |
| ATCACCCTTCTATCCTCATC+AGG | 0.491816 | 7.4:-1906060 | None:intergenic |
| TTTGTGCCTGTTGCAACGCC+CGG | 0.496643 | 7.4:-1906491 | None:intergenic |
| AAATTTGAAACATGAAGTAT+CGG | 0.504455 | 7.4:-1906270 | None:intergenic |
| TTCTTCCGAAATCGAACTCA+AGG | 0.505225 | 7.4:+1906346 | MS.gene22870:CDS |
| GCGTTTGATAAATGATGTAA+TGG | 0.505741 | 7.4:+1906689 | MS.gene22870:CDS |
| CTATGAAAGCAACAAATTGA+AGG | 0.510314 | 7.4:-1905672 | None:intergenic |
| CGTTAAGACCTCTAAACTGT+TGG | 0.510727 | 7.4:-1908107 | None:intergenic |
| GTTGCTTTCATAGTTCTATG+TGG | 0.512396 | 7.4:+1905682 | MS.gene22870:CDS |
| AGTATAGGCATTGAGTAAAT+GGG | 0.513040 | 7.4:-1905710 | None:intergenic |
| ATGAGGGCCATAGTAAGTAT+AGG | 0.515615 | 7.4:-1905725 | None:intergenic |
| TACCAATTTAAATGGAACAT+TGG | 0.516471 | 7.4:-1905647 | None:intergenic |
| AGAAACAATTGAAAGGAATG+AGG | 0.527304 | 7.4:-1905742 | None:intergenic |
| GCTATCTCATGAAGGAGGAT+AGG | 0.531373 | 7.4:-1908438 | None:intergenic |
| CATAAAGGAGAGATGCCTAC+AGG | 0.532003 | 7.4:+1908389 | MS.gene22870:CDS |
| CTTCAAATGCCTGAAATGGA+TGG | 0.537656 | 7.4:+1908282 | MS.gene22870:CDS |
| TTTCTTGAAGCAGAATGTGT+TGG | 0.539138 | 7.4:+1905870 | MS.gene22870:CDS |
| CATTTGCAAAACACTGGTGC+AGG | 0.542360 | 7.4:+1907157 | MS.gene22870:CDS |
| CAATGATGGCCAGCCAGGCA+AGG | 0.543126 | 7.4:+1906520 | MS.gene22870:CDS |
| AGAAACAGAAGGAGGCTAGT+TGG | 0.551296 | 7.4:+1905920 | MS.gene22870:CDS |
| GAGCTATGAAAACTCTTCGC+CGG | 0.551463 | 7.4:-1906111 | None:intergenic |
| AAAAGAAGAGGAATCAAGGT+GGG | 0.554060 | 7.4:-1905826 | None:intergenic |
| TTGCAGTGGCACATGAAACA+AGG | 0.555378 | 7.4:-1905795 | None:intergenic |
| TTAGAGATAAGAAAGAGCAA+GGG | 0.559027 | 7.4:+1906159 | MS.gene22870:CDS |
| GCAAAGGTCTCCTCATTCCA+TGG | 0.564414 | 7.4:-1906566 | None:intergenic |
| AAGTGATGAGCCATGGAATG+AGG | 0.565260 | 7.4:+1906556 | MS.gene22870:CDS |
| CCATCTACATTCCACGATGA+GGG | 0.566420 | 7.4:+1906761 | MS.gene22870:CDS |
| CCACAACAATGAACCTAAGG+AGG | 0.566649 | 7.4:+1907121 | MS.gene22870:CDS |
| ACGAATGGCTGCTACAGCAC+CGG | 0.566933 | 7.4:-1906244 | None:intergenic |
| AGTTGCTGACCAGGTTGCTG+TGG | 0.568847 | 7.4:+1906404 | MS.gene22870:CDS |
| CCACTATCTCCATCTCATGG+TGG | 0.569247 | 7.4:-1906377 | None:intergenic |
| TTTGCTTTCAATGTTTCAAG+AGG | 0.570011 | 7.4:+1906602 | MS.gene22870:CDS |
| AGTGGAGGTAGTTGCTGACC+AGG | 0.570687 | 7.4:+1906395 | MS.gene22870:CDS |
| TGGATATCACCAAACTCTCT+GGG | 0.571039 | 7.4:+1907997 | MS.gene22870:CDS |
| GAAACAATTGAAAGGAATGA+GGG | 0.573404 | 7.4:-1905741 | None:intergenic |
| AAGAAGCTGCTTGAGAAGCT+GGG | 0.574319 | 7.4:+1908171 | MS.gene22870:CDS |
| AGAACAGTCCTGCTACGTGC+AGG | 0.575168 | 7.4:+1908471 | MS.gene22870:CDS |
| GCACCACAACAATGAACCTA+AGG | 0.576436 | 7.4:+1907118 | MS.gene22870:CDS |
| AGTGGTGAATCTGGGGACTC+CGG | 0.577575 | 7.4:+1906225 | MS.gene22870:CDS |
| ACCTATTACCATATCAGGCA+AGG | 0.579803 | 7.4:-1906853 | None:intergenic |
| GAGAGATAGAAACAATTGAA+AGG | 0.580396 | 7.4:-1905749 | None:intergenic |
| GCACTCGGAGCTGCGAGTAG+TGG | 0.580746 | 7.4:+1906207 | MS.gene22870:CDS |
| GAAATTTCAGCCAACGACAA+AGG | 0.583389 | 7.4:+1906711 | MS.gene22870:CDS |
| TTTGAGAAAGTGATGAGCCA+TGG | 0.585455 | 7.4:+1906549 | MS.gene22870:CDS |
| GCTTTGGACCCACCATGAGA+TGG | 0.587831 | 7.4:+1906368 | MS.gene22870:CDS |
| AGCAGAATGTGTTGGAATTG+GGG | 0.589243 | 7.4:+1905878 | MS.gene22870:CDS |
| TGTGTTGGAATTGGGGCAAG+AGG | 0.591001 | 7.4:+1905885 | MS.gene22870:CDS |
| TAGAGATAAGAAAGAGCAAG+GGG | 0.591331 | 7.4:+1906160 | MS.gene22870:CDS |
| CTTCAGCATTTGCAAAACAC+TGG | 0.591426 | 7.4:+1907151 | MS.gene22870:CDS |
| CAAAGACTTCCTAATCTCGC+GGG | 0.591973 | 7.4:-1905959 | None:intergenic |
| ACTCTCTGGGTTTGGCACAA+GGG | 0.593543 | 7.4:+1908010 | MS.gene22870:CDS |
| TCCATCTACATTCCACGATG+AGG | 0.594668 | 7.4:+1906760 | MS.gene22870:CDS |
| ATGAAGTATCGGCATACGAA+TGG | 0.595708 | 7.4:-1906259 | None:intergenic |
| TGGGATTATGAAGAAACAGA+AGG | 0.598480 | 7.4:+1905909 | MS.gene22870:CDS |
| TTTAATGTACAGATGATGGA+AGG | 0.599238 | 7.4:+1907967 | MS.gene22870:intron |
| CCAAAGACTTCCTAATCTCG+CGG | 0.601574 | 7.4:-1905960 | None:intergenic |
| CTTGGAGTTGCATAATTGTG+CGG | 0.602360 | 7.4:+1906029 | MS.gene22870:CDS |
| TTTATACACACACAAACACT+TGG | 0.603367 | 7.4:-1906799 | None:intergenic |
| GCTGTAAGAGCAATAATCAA+AGG | 0.605453 | 7.4:-1908351 | None:intergenic |
| GGTACTAGTTCCCATTCAGA+TGG | 0.605734 | 7.4:+1907068 | MS.gene22870:CDS |
| GAGACAAGGCCACAGCAACC+TGG | 0.608666 | 7.4:-1906413 | None:intergenic |
| TGGTAATAGGTGATGAGGCA+AGG | 0.611503 | 7.4:+1906865 | MS.gene22870:CDS |
| GTTCGTTAGCTATCTCATGA+AGG | 0.613143 | 7.4:-1908446 | None:intergenic |
| TGCAGTGGCACATGAAACAA+GGG | 0.615264 | 7.4:-1905794 | None:intergenic |
| TGCGAGTAGTGGTGAATCTG+GGG | 0.617209 | 7.4:+1906218 | MS.gene22870:CDS |
| TAAGATGTCTCAACAAACTC+CGG | 0.617656 | 7.4:-1906306 | None:intergenic |
| CCTCCACTATCTCCATCTCA+TGG | 0.620492 | 7.4:-1906380 | None:intergenic |
| CGCACAATTATGCAACTCCA+AGG | 0.622141 | 7.4:-1906028 | None:intergenic |
| AAAGGAGAGATGCCTACAGG+TGG | 0.625741 | 7.4:+1908392 | MS.gene22870:CDS |
| AAAGAAGAGGAATCAAGGTG+GGG | 0.631154 | 7.4:-1905825 | None:intergenic |
| TTTCAATCAGGATCATCGCA+TGG | 0.633630 | 7.4:+1908051 | MS.gene22870:CDS |
| TGCGGTTTGGATGCCTGATG+AGG | 0.636065 | 7.4:+1906047 | MS.gene22870:CDS |
| AAGAACAGATGCATGAGACA+AGG | 0.644755 | 7.4:-1906427 | None:intergenic |
| AAACCCAGGATTGAATGCAA+AGG | 0.645170 | 7.4:-1906582 | None:intergenic |
| TTTGGAAAGCTCAACAAGTG+TGG | 0.647875 | 7.4:-1906004 | None:intergenic |
| CGTTAGCTATCTCATGAAGG+AGG | 0.649779 | 7.4:-1908443 | None:intergenic |
| GATGCCTGATGAGGATAGAA+GGG | 0.652796 | 7.4:+1906056 | MS.gene22870:CDS |
| GAAACATTGAAAGCAAACCC+AGG | 0.654290 | 7.4:-1906596 | None:intergenic |
| ATCAAAACCCGATGAAACAG+CGG | 0.664158 | 7.4:-1908205 | None:intergenic |
| AAGGAGAGATGCCTACAGGT+GGG | 0.666460 | 7.4:+1908393 | MS.gene22870:CDS |
| GCAAGAAGCTTCCCTCATCG+TGG | 0.667374 | 7.4:-1906772 | None:intergenic |
| TGATATGGTAATAGGTGATG+AGG | 0.667642 | 7.4:+1906860 | MS.gene22870:CDS |
| CACATGAAACAAGGGCAGTG+AGG | 0.669285 | 7.4:-1905786 | None:intergenic |
| CACAACAATGAACCTAAGGA+GGG | 0.669995 | 7.4:+1907122 | MS.gene22870:CDS |
| AGAGATAAGAAAGAGCAAGG+GGG | 0.671908 | 7.4:+1906161 | MS.gene22870:CDS |
| CCATGAGATGGAGATAGTGG+AGG | 0.673370 | 7.4:+1906380 | MS.gene22870:CDS |
| ACTTCTATCATCCTTATCTG+CGG | 0.674734 | 7.4:-1906979 | None:intergenic |
| GAAACTTAAAGAGCAAAACC+GGG | 0.674790 | 7.4:+1906473 | MS.gene22870:CDS |
| ATCCATTCATTCCCACCTGT+AGG | 0.679015 | 7.4:-1908404 | None:intergenic |
| CAAAAGAAGAGGAATCAAGG+TGG | 0.682155 | 7.4:-1905827 | None:intergenic |
| GGTGGGGAAAGTAATTGCAG+TGG | 0.686035 | 7.4:-1905809 | None:intergenic |
| GATTATGAAGAAACAGAAGG+AGG | 0.703737 | 7.4:+1905912 | MS.gene22870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTCTTTTTCAAATTTATA+TGG | + | chr7.4:1907186-1907205 | MS.gene22870:intron | 15.0% |
| !! | AATATTCAAAAGGTAAAAAG+TGG | - | chr7.4:1907881-1907900 | None:intergenic | 20.0% |
| !! | AATATTTAATGTACAGATGA+TGG | + | chr7.4:1907963-1907982 | MS.gene22870:intron | 20.0% |
| !! | ATCAACAAAAACTTAAACAA+AGG | - | chr7.4:1907218-1907237 | None:intergenic | 20.0% |
| !! | TATTGAACTTATATGATAGA+GGG | + | chr7.4:1906922-1906941 | MS.gene22870:intron | 20.0% |
| !! | TCTGTACATTAAATATTGTA+TGG | - | chr7.4:1907960-1907979 | None:intergenic | 20.0% |
| !! | TTATTGAACTTATATGATAG+AGG | + | chr7.4:1906921-1906940 | MS.gene22870:intron | 20.0% |
| !!! | AAATTTGAAACATGAAGTAT+CGG | - | chr7.4:1906273-1906292 | None:intergenic | 20.0% |
| !!! | ATGTTTCAAATTTTAAAGGA+GGG | + | chr7.4:1906280-1906299 | MS.gene22870:CDS | 20.0% |
| !!! | CAATTAATTTTGCATATGAT+CGG | + | chr7.4:1906894-1906913 | MS.gene22870:intron | 20.0% |
| !!! | CTATCAATAAAATTAGTTTG+TGG | + | chr7.4:1907445-1907464 | MS.gene22870:intron | 20.0% |
| !!! | CTTCATGTTTCAAATTTTAA+AGG | + | chr7.4:1906276-1906295 | MS.gene22870:CDS | 20.0% |
| ! | AACCACACTATAAATAATAC+TGG | - | chr7.4:1907572-1907591 | None:intergenic | 25.0% |
| ! | AACCAGTATTATTTATAGTG+TGG | + | chr7.4:1907567-1907586 | MS.gene22870:intron | 25.0% |
| ! | AGTATCTATTCATCACAAAT+CGG | + | chr7.4:1907610-1907629 | MS.gene22870:intron | 25.0% |
| ! | ATGAATAGATACTAAGAATG+AGG | - | chr7.4:1907603-1907622 | None:intergenic | 25.0% |
| ! | CTAAATGAAGAATGAAATAG+CGG | + | chr7.4:1907652-1907671 | MS.gene22870:intron | 25.0% |
| ! | CTTGTTTACATTATCATCAT+CGG | - | chr7.4:1908142-1908161 | None:intergenic | 25.0% |
| ! | TACCAATTTAAATGGAACAT+TGG | - | chr7.4:1905650-1905669 | None:intergenic | 25.0% |
| ! | TGAAGGAATACCAATTTAAA+TGG | - | chr7.4:1905658-1905677 | None:intergenic | 25.0% |
| ! | TTATTTATAGTGTGGTTTCT+TGG | + | chr7.4:1907575-1907594 | MS.gene22870:intron | 25.0% |
| ! | TTCACTTATTCAGATAATTG+AGG | - | chr7.4:1907379-1907398 | None:intergenic | 25.0% |
| !! | AAGTTTAATTTCCAGATAAC+TGG | + | chr7.4:1907047-1907066 | MS.gene22870:CDS | 25.0% |
| !! | CAATTTTAAATAGTGCTAGT+AGG | + | chr7.4:1907093-1907112 | MS.gene22870:CDS | 25.0% |
| !! | CTACTAGCACTATTTAAAAT+TGG | - | chr7.4:1907095-1907114 | None:intergenic | 25.0% |
| !!! | ATCTTATGCTATACTAGTTT+TGG | + | chr7.4:1906323-1906342 | MS.gene22870:CDS | 25.0% |
| !!! | CATGTTTCAAATTTTAAAGG+AGG | + | chr7.4:1906279-1906298 | MS.gene22870:CDS | 25.0% |
| !!! | CTCTATTTCTGTAAATGATT+TGG | + | chr7.4:1906131-1906150 | MS.gene22870:CDS | 25.0% |
| !!! | TCAATAAAATTAGTTTGTGG+TGG | + | chr7.4:1907448-1907467 | MS.gene22870:intron | 25.0% |
| AACAAAGTAAAGTAGCTCAA+GGG | - | chr7.4:1905620-1905639 | None:intergenic | 30.0% | |
| AAGTGTTTGTGTGTGTATAA+AGG | + | chr7.4:1906801-1906820 | MS.gene22870:CDS | 30.0% | |
| AGAAACAATTGAAAGGAATG+AGG | - | chr7.4:1905745-1905764 | None:intergenic | 30.0% | |
| AGAAACTTAAAGAGCAAAAC+CGG | + | chr7.4:1906472-1906491 | MS.gene22870:CDS | 30.0% | |
| AGTTGCATCTACACTAAATA+GGG | - | chr7.4:1907523-1907542 | None:intergenic | 30.0% | |
| CAATAATCAAAGGCCAATTT+CGG | - | chr7.4:1908344-1908363 | None:intergenic | 30.0% | |
| CTATGAAAGCAACAAATTGA+AGG | - | chr7.4:1905675-1905694 | None:intergenic | 30.0% | |
| CTCCAATGTTCCATTTAAAT+TGG | + | chr7.4:1905645-1905664 | MS.gene22870:CDS | 30.0% | |
| GAAACAATTGAAAGGAATGA+GGG | - | chr7.4:1905744-1905763 | None:intergenic | 30.0% | |
| GAGAGATAGAAACAATTGAA+AGG | - | chr7.4:1905752-1905771 | None:intergenic | 30.0% | |
| GCGTTTGATAAATGATGTAA+TGG | + | chr7.4:1906689-1906708 | MS.gene22870:CDS | 30.0% | |
| GTGAATCAAGCATATGTTAT+AGG | - | chr7.4:1907910-1907929 | None:intergenic | 30.0% | |
| GTTACAAAACAATCACACAA+TGG | - | chr7.4:1907932-1907951 | None:intergenic | 30.0% | |
| TAAAATTGGTCCATCTGAAT+GGG | - | chr7.4:1907081-1907100 | None:intergenic | 30.0% | |
| TAACAAAGTAAAGTAGCTCA+AGG | - | chr7.4:1905621-1905640 | None:intergenic | 30.0% | |
| TAGGACACAGAATATTCAAA+AGG | - | chr7.4:1907891-1907910 | None:intergenic | 30.0% | |
| TAGTTGCATCTACACTAAAT+AGG | - | chr7.4:1907524-1907543 | None:intergenic | 30.0% | |
| TTAAAATTGGTCCATCTGAA+TGG | - | chr7.4:1907082-1907101 | None:intergenic | 30.0% | |
| TTAGAGATAAGAAAGAGCAA+GGG | + | chr7.4:1906159-1906178 | MS.gene22870:CDS | 30.0% | |
| TTTATACACACACAAACACT+TGG | - | chr7.4:1906802-1906821 | None:intergenic | 30.0% | |
| TTTCAAAAGAAGAGGAATCA+AGG | - | chr7.4:1905833-1905852 | None:intergenic | 30.0% | |
| TTTGCTTTCAATGTTTCAAG+AGG | + | chr7.4:1906602-1906621 | MS.gene22870:CDS | 30.0% | |
| ! | AATCGTTGTGTCAGATTTTT+AGG | + | chr7.4:1907474-1907493 | MS.gene22870:intron | 30.0% |
| ! | ACCATTCAAAATCATCCTTT+TGG | + | chr7.4:1908257-1908276 | MS.gene22870:CDS | 30.0% |
| ! | ACCTTGATTTTCAAAAGAAG+AGG | - | chr7.4:1905841-1905860 | None:intergenic | 30.0% |
| ! | AGGGGGCTTTTTAAATTTAT+TGG | - | chr7.4:1907504-1907523 | None:intergenic | 30.0% |
| ! | CGCTATTTCATTCTTCATTT+AGG | - | chr7.4:1907654-1907673 | None:intergenic | 30.0% |
| ! | GATGATTTTGAATGGTATAC+TGG | - | chr7.4:1908253-1908272 | None:intergenic | 30.0% |
| ! | TCCAAAAGGATGATTTTGAA+TGG | - | chr7.4:1908261-1908280 | None:intergenic | 30.0% |
| ! | TCTTGGTTTGACAAAATTTC+CGG | + | chr7.4:1907350-1907369 | MS.gene22870:intron | 30.0% |
| ! | TTTTCAAACCAACAGTTTAG+AGG | + | chr7.4:1908099-1908118 | MS.gene22870:CDS | 30.0% |
| !! | AAGTATAGGCATTGAGTAAA+TGG | - | chr7.4:1905714-1905733 | None:intergenic | 30.0% |
| !! | AGTATAGGCATTGAGTAAAT+GGG | - | chr7.4:1905713-1905732 | None:intergenic | 30.0% |
| !! | ATGATGATGATGATGGAATT+TGG | + | chr7.4:1905524-1905543 | MS.gene22870:CDS | 30.0% |
| !! | TCCTCTTCTTTTGAAAATCA+AGG | + | chr7.4:1905837-1905856 | MS.gene22870:CDS | 30.0% |
| !! | TCTTTTGAAAATCAAGGTGA+GGG | + | chr7.4:1905843-1905862 | MS.gene22870:CDS | 30.0% |
| !! | TTCTTTTGAAAATCAAGGTG+AGG | + | chr7.4:1905842-1905861 | MS.gene22870:CDS | 30.0% |
| !! | TTGGAGTGTACAAAGTATTT+TGG | + | chr7.4:1905543-1905562 | MS.gene22870:CDS | 30.0% |
| !! | TTTAATGTACAGATGATGGA+AGG | + | chr7.4:1907967-1907986 | MS.gene22870:intron | 30.0% |
| AAAAGAAGAGGAATCAAGGT+GGG | - | chr7.4:1905829-1905848 | None:intergenic | 35.0% | |
| AAGCAGAATGTGTTGGAATT+GGG | + | chr7.4:1905877-1905896 | MS.gene22870:CDS | 35.0% | |
| ACAAAGTAAAGTAGCTCAAG+GGG | - | chr7.4:1905619-1905638 | None:intergenic | 35.0% | |
| ACTTCAAAACCATCCATTTC+AGG | - | chr7.4:1908294-1908313 | None:intergenic | 35.0% | |
| ACTTCTATCATCCTTATCTG+CGG | - | chr7.4:1906982-1907001 | None:intergenic | 35.0% | |
| ATTCAGATAATTGAGGCTAC+CGG | - | chr7.4:1907372-1907391 | None:intergenic | 35.0% | |
| CGAGTAGAAACTTAATACAG+AGG | - | chr7.4:1907850-1907869 | None:intergenic | 35.0% | |
| CTCAATGCCTATACTTACTA+TGG | + | chr7.4:1905718-1905737 | MS.gene22870:CDS | 35.0% | |
| CTTCTTCTCAAGTTTCAATC+AGG | + | chr7.4:1908039-1908058 | MS.gene22870:CDS | 35.0% | |
| GAAACTTAAAGAGCAAAACC+GGG | + | chr7.4:1906473-1906492 | MS.gene22870:CDS | 35.0% | |
| GATAAGGATGATAGAAGTTC+TGG | + | chr7.4:1906984-1907003 | MS.gene22870:CDS | 35.0% | |
| GATTATGAAGAAACAGAAGG+AGG | + | chr7.4:1905912-1905931 | MS.gene22870:CDS | 35.0% | |
| GCTGTAAGAGCAATAATCAA+AGG | - | chr7.4:1908354-1908373 | None:intergenic | 35.0% | |
| GGAAATGTTTCAACTCTAAC+TGG | - | chr7.4:1906743-1906762 | None:intergenic | 35.0% | |
| GTTAGAGATAAGAAAGAGCA+AGG | + | chr7.4:1906158-1906177 | MS.gene22870:CDS | 35.0% | |
| GTTGCATCTACACTAAATAG+GGG | - | chr7.4:1907522-1907541 | None:intergenic | 35.0% | |
| TAAGATGTCTCAACAAACTC+CGG | - | chr7.4:1906309-1906328 | None:intergenic | 35.0% | |
| TAGAGATAAGAAAGAGCAAG+GGG | + | chr7.4:1906160-1906179 | MS.gene22870:CDS | 35.0% | |
| TCATCACCTATTACCATATC+AGG | - | chr7.4:1906861-1906880 | None:intergenic | 35.0% | |
| TGATATGGTAATAGGTGATG+AGG | + | chr7.4:1906860-1906879 | MS.gene22870:CDS | 35.0% | |
| TGCGTATCTGTTTATGATGT+TGG | + | chr7.4:1907407-1907426 | MS.gene22870:intron | 35.0% | |
| TGGGATTATGAAGAAACAGA+AGG | + | chr7.4:1905909-1905928 | MS.gene22870:CDS | 35.0% | |
| TTGAAGTTGCAAGGAAGATT+CGG | + | chr7.4:1908307-1908326 | MS.gene22870:CDS | 35.0% | |
| TTGCATCTACACTAAATAGG+GGG | - | chr7.4:1907521-1907540 | None:intergenic | 35.0% | |
| TTGTGTGTGTATAAAGGCTT+TGG | + | chr7.4:1906807-1906826 | MS.gene22870:CDS | 35.0% | |
| TTTCTTGAAGCAGAATGTGT+TGG | + | chr7.4:1905870-1905889 | MS.gene22870:CDS | 35.0% | |
| ! | AACTGTGATGATGATGATGA+TGG | + | chr7.4:1905517-1905536 | MS.gene22870:CDS | 35.0% |
| ! | ATGAAGAATGAAATAGCGGA+AGG | + | chr7.4:1907656-1907675 | MS.gene22870:intron | 35.0% |
| ! | GATTTTGAATGGTATACTGG+AGG | - | chr7.4:1908250-1908269 | None:intergenic | 35.0% |
| ! | GTTGCTTTCATAGTTCTATG+TGG | + | chr7.4:1905682-1905701 | MS.gene22870:CDS | 35.0% |
| ! | TGAAGAATGAAATAGCGGAA+GGG | + | chr7.4:1907657-1907676 | MS.gene22870:intron | 35.0% |
| ! | TTTTGCAAATGCTGAAGCTT+AGG | - | chr7.4:1907148-1907167 | None:intergenic | 35.0% |
| !! | AAATTTTAAAGGAGGGACAC+CGG | + | chr7.4:1906287-1906306 | MS.gene22870:CDS | 35.0% |
| !! | AGATGATGGAAGGTAATATC+TGG | + | chr7.4:1907977-1907996 | MS.gene22870:intron | 35.0% |
| !!! | TTCATCGGGTTTTGATTGTT+TGG | + | chr7.4:1908212-1908231 | MS.gene22870:CDS | 35.0% |
| AAACCCAGGATTGAATGCAA+AGG | - | chr7.4:1906585-1906604 | None:intergenic | 40.0% | |
| AAAGAAGAGGAATCAAGGTG+GGG | - | chr7.4:1905828-1905847 | None:intergenic | 40.0% | |
| AAGAACAGATGCATGAGACA+AGG | - | chr7.4:1906430-1906449 | None:intergenic | 40.0% | |
| AAGTGCAGAAGAACGCATAA+AGG | + | chr7.4:1908374-1908393 | MS.gene22870:CDS | 40.0% | |
| ACCTATTACCATATCAGGCA+AGG | - | chr7.4:1906856-1906875 | None:intergenic | 40.0% | |
| AGACCTTTGCATTCAATCCT+GGG | + | chr7.4:1906579-1906598 | MS.gene22870:CDS | 40.0% | |
| AGAGATAAGAAAGAGCAAGG+GGG | + | chr7.4:1906161-1906180 | MS.gene22870:CDS | 40.0% | |
| AGATGCAACTAATTGCATGC+AGG | + | chr7.4:1907533-1907552 | MS.gene22870:intron | 40.0% | |
| AGCAGAATGTGTTGGAATTG+GGG | + | chr7.4:1905878-1905897 | MS.gene22870:CDS | 40.0% | |
| AGCAGCTCATACTTTGTCAA+AGG | - | chr7.4:1907256-1907275 | None:intergenic | 40.0% | |
| AGCTCATACTTTGTCAAAGG+TGG | - | chr7.4:1907253-1907272 | None:intergenic | 40.0% | |
| AGTTGCATAATTGTGCGGTT+TGG | + | chr7.4:1906034-1906053 | MS.gene22870:CDS | 40.0% | |
| ATCAAAACCCGATGAAACAG+CGG | - | chr7.4:1908208-1908227 | None:intergenic | 40.0% | |
| ATGAGGGCCATAGTAAGTAT+AGG | - | chr7.4:1905728-1905747 | None:intergenic | 40.0% | |
| ATTATGCAACTCCAAGGCTT+TGG | - | chr7.4:1906025-1906044 | None:intergenic | 40.0% | |
| CAAAAGAAGAGGAATCAAGG+TGG | - | chr7.4:1905830-1905849 | None:intergenic | 40.0% | |
| CAAAGCCTTGAGTTCGATTT+CGG | - | chr7.4:1906354-1906373 | None:intergenic | 40.0% | |
| CACAACAATGAACCTAAGGA+GGG | + | chr7.4:1907122-1907141 | MS.gene22870:CDS | 40.0% | |
| CAGGCATTTGAAGATCCAAA+AGG | - | chr7.4:1908275-1908294 | None:intergenic | 40.0% | |
| CATCATAAACAGATACGCAC+AGG | - | chr7.4:1907406-1907425 | None:intergenic | 40.0% | |
| CGTTAAGACCTCTAAACTGT+TGG | - | chr7.4:1908110-1908129 | None:intergenic | 40.0% | |
| CTCATACTTTGTCAAAGGTG+GGG | - | chr7.4:1907251-1907270 | None:intergenic | 40.0% | |
| CTTCAAATGCCTGAAATGGA+TGG | + | chr7.4:1908282-1908301 | MS.gene22870:CDS | 40.0% | |
| CTTCAGCATTTGCAAAACAC+TGG | + | chr7.4:1907151-1907170 | MS.gene22870:CDS | 40.0% | |
| CTTGGAGTTGCATAATTGTG+CGG | + | chr7.4:1906029-1906048 | MS.gene22870:CDS | 40.0% | |
| GAAACATTGAAAGCAAACCC+AGG | - | chr7.4:1906599-1906618 | None:intergenic | 40.0% | |
| GAAATTTCAGCCAACGACAA+AGG | + | chr7.4:1906711-1906730 | MS.gene22870:CDS | 40.0% | |
| GAAGCAGAATGTGTTGGAAT+TGG | + | chr7.4:1905876-1905895 | MS.gene22870:CDS | 40.0% | |
| GATGCAACTAATTGCATGCA+GGG | + | chr7.4:1907534-1907553 | MS.gene22870:intron | 40.0% | |
| GCTCATACTTTGTCAAAGGT+GGG | - | chr7.4:1907252-1907271 | None:intergenic | 40.0% | |
| GGATCTTCAAATGCCTGAAA+TGG | + | chr7.4:1908278-1908297 | MS.gene22870:CDS | 40.0% | |
| GTTCGTTAGCTATCTCATGA+AGG | - | chr7.4:1908449-1908468 | None:intergenic | 40.0% | |
| TCCTTGCCTGATATGGTAAT+AGG | + | chr7.4:1906852-1906871 | MS.gene22870:CDS | 40.0% | |
| TGAAAGTGATACCGCAGATA+AGG | + | chr7.4:1906968-1906987 | MS.gene22870:intron | 40.0% | |
| TGGATATCACCAAACTCTCT+GGG | + | chr7.4:1907997-1908016 | MS.gene22870:CDS | 40.0% | |
| TTCTTCCGAAATCGAACTCA+AGG | + | chr7.4:1906346-1906365 | MS.gene22870:CDS | 40.0% | |
| TTTCAATCAGGATCATCGCA+TGG | + | chr7.4:1908051-1908070 | MS.gene22870:CDS | 40.0% | |
| TTTGAGAAAGTGATGAGCCA+TGG | + | chr7.4:1906549-1906568 | MS.gene22870:CDS | 40.0% | |
| TTTGGAAAGCTCAACAAGTG+TGG | - | chr7.4:1906007-1906026 | None:intergenic | 40.0% | |
| ! | GAACTACATTTTACGCACAG+AGG | + | chr7.4:1907322-1907341 | MS.gene22870:intron | 40.0% |
| ! | TCAAGTAACCGCTGTTTCAT+CGG | + | chr7.4:1908197-1908216 | MS.gene22870:CDS | 40.0% |
| !! | ATGAAGTATCGGCATACGAA+TGG | - | chr7.4:1906262-1906281 | None:intergenic | 40.0% |
| !!! | TGGATGGTTTTGAAGTTGCA+AGG | + | chr7.4:1908298-1908317 | MS.gene22870:CDS | 40.0% |
| AAAAAGACTCAGCCTGTGCT+TGG | + | chr7.4:1907745-1907764 | MS.gene22870:intron | 45.0% | |
| AAGAAGCTGCTTGAGAAGCT+GGG | + | chr7.4:1908171-1908190 | MS.gene22870:CDS | 45.0% | |
| AAGTGATGAGCCATGGAATG+AGG | + | chr7.4:1906556-1906575 | MS.gene22870:CDS | 45.0% | |
| AGAAACAGAAGGAGGCTAGT+TGG | + | chr7.4:1905920-1905939 | MS.gene22870:CDS | 45.0% | |
| AGCTGCACGTTTAGTGAGAA+GGG | + | chr7.4:1907788-1907807 | MS.gene22870:intron | 45.0% | |
| ATCACCAAACTCTCTGGGTT+TGG | + | chr7.4:1908002-1908021 | MS.gene22870:CDS | 45.0% | |
| ATCACCCTTCTATCCTCATC+AGG | - | chr7.4:1906063-1906082 | None:intergenic | 45.0% | |
| ATCCATTCATTCCCACCTGT+AGG | - | chr7.4:1908407-1908426 | None:intergenic | 45.0% | |
| CAAAGACTTCCTAATCTCGC+GGG | - | chr7.4:1905962-1905981 | None:intergenic | 45.0% | |
| CACTATCTCCATCTCATGGT+GGG | - | chr7.4:1906379-1906398 | None:intergenic | 45.0% | |
| CATAAAGGAGAGATGCCTAC+AGG | + | chr7.4:1908389-1908408 | MS.gene22870:CDS | 45.0% | |
| CATTTGCAAAACACTGGTGC+AGG | + | chr7.4:1907157-1907176 | MS.gene22870:CDS | 45.0% | |
| CCAAAGACTTCCTAATCTCG+CGG | - | chr7.4:1905963-1905982 | None:intergenic | 45.0% | |
| CCACAACAATGAACCTAAGG+AGG | + | chr7.4:1907121-1907140 | MS.gene22870:CDS | 45.0% | |
| CCATCTACATTCCACGATGA+GGG | + | chr7.4:1906761-1906780 | MS.gene22870:CDS | 45.0% | |
| CCTCCTTAGGTTCATTGTTG+TGG | - | chr7.4:1907124-1907143 | None:intergenic | 45.0% | |
| CGAAATCGAACTCAAGGCTT+TGG | + | chr7.4:1906352-1906371 | MS.gene22870:CDS | 45.0% | |
| CGCACAATTATGCAACTCCA+AGG | - | chr7.4:1906031-1906050 | None:intergenic | 45.0% | |
| CGTTAGCTATCTCATGAAGG+AGG | - | chr7.4:1908446-1908465 | None:intergenic | 45.0% | |
| CTGGAAACTTCCTTTGTCGT+TGG | - | chr7.4:1906724-1906743 | None:intergenic | 45.0% | |
| CTGGATATCACCAAACTCTC+TGG | + | chr7.4:1907996-1908015 | MS.gene22870:CDS | 45.0% | |
| GAGACCTTTGCATTCAATCC+TGG | + | chr7.4:1906578-1906597 | MS.gene22870:CDS | 45.0% | |
| GAGCTATGAAAACTCTTCGC+CGG | - | chr7.4:1906114-1906133 | None:intergenic | 45.0% | |
| GATGCCTGATGAGGATAGAA+GGG | + | chr7.4:1906056-1906075 | MS.gene22870:CDS | 45.0% | |
| GCACCACAACAATGAACCTA+AGG | + | chr7.4:1907118-1907137 | MS.gene22870:CDS | 45.0% | |
| GCTATCTCATGAAGGAGGAT+AGG | - | chr7.4:1908441-1908460 | None:intergenic | 45.0% | |
| GGAAGTTCCAAAGCCGAAAT+TGG | + | chr7.4:1908328-1908347 | MS.gene22870:CDS | 45.0% | |
| GGGAACTAGTACCAGTTATC+TGG | - | chr7.4:1907061-1907080 | None:intergenic | 45.0% | |
| GGTACTAGTTCCCATTCAGA+TGG | + | chr7.4:1907068-1907087 | MS.gene22870:CDS | 45.0% | |
| GTAAAGTAGCTCAAGGGGTA+TGG | - | chr7.4:1905614-1905633 | None:intergenic | 45.0% | |
| TAAGAAGCTGCTTGAGAAGC+TGG | + | chr7.4:1908170-1908189 | MS.gene22870:CDS | 45.0% | |
| TCAAAGGCCAATTTCGGCTT+TGG | - | chr7.4:1908338-1908357 | None:intergenic | 45.0% | |
| TCCATCTACATTCCACGATG+AGG | + | chr7.4:1906760-1906779 | MS.gene22870:CDS | 45.0% | |
| TGAAAACTCTTCGCCGGATT+CGG | - | chr7.4:1906108-1906127 | None:intergenic | 45.0% | |
| TGCAGTGGCACATGAAACAA+GGG | - | chr7.4:1905797-1905816 | None:intergenic | 45.0% | |
| TGGTAATAGGTGATGAGGCA+AGG | + | chr7.4:1906865-1906884 | MS.gene22870:CDS | 45.0% | |
| TGTTGAGCTTTCCAAAGCCT+TGG | + | chr7.4:1906011-1906030 | MS.gene22870:CDS | 45.0% | |
| TTGCAGTGGCACATGAAACA+AGG | - | chr7.4:1905798-1905817 | None:intergenic | 45.0% | |
| ! | CAAGTAACCGCTGTTTCATC+GGG | + | chr7.4:1908198-1908217 | MS.gene22870:CDS | 45.0% |
| ! | GGCACAAAAGCATGCAATGA+TGG | + | chr7.4:1906506-1906525 | MS.gene22870:CDS | 45.0% |
| ! | TCATGAGTTGAAGCCGAATC+CGG | + | chr7.4:1906092-1906111 | MS.gene22870:CDS | 45.0% |
| AAAGGAGAGATGCCTACAGG+TGG | + | chr7.4:1908392-1908411 | MS.gene22870:CDS | 50.0% | |
| AACTCTCTGGGTTTGGCACA+AGG | + | chr7.4:1908009-1908028 | MS.gene22870:CDS | 50.0% | |
| AAGGAGAGATGCCTACAGGT+GGG | + | chr7.4:1908393-1908412 | MS.gene22870:CDS | 50.0% | |
| ACTCTCTGGGTTTGGCACAA+GGG | + | chr7.4:1908010-1908029 | MS.gene22870:CDS | 50.0% | |
| ACTTTGTCAAAGGTGGGGAG+AGG | - | chr7.4:1907246-1907265 | None:intergenic | 50.0% | |
| CACATGAAACAAGGGCAGTG+AGG | - | chr7.4:1905789-1905808 | None:intergenic | 50.0% | |
| CAGCTGCACGTTTAGTGAGA+AGG | + | chr7.4:1907787-1907806 | MS.gene22870:intron | 50.0% | |
| CCACCATGAGATGGAGATAG+TGG | + | chr7.4:1906377-1906396 | MS.gene22870:CDS | 50.0% | |
| CCACTATCTCCATCTCATGG+TGG | - | chr7.4:1906380-1906399 | None:intergenic | 50.0% | |
| CCCTCATCGTGGAATGTAGA+TGG | - | chr7.4:1906764-1906783 | None:intergenic | 50.0% | |
| CCGCGAGATTAGGAAGTCTT+TGG | + | chr7.4:1905960-1905979 | MS.gene22870:CDS | 50.0% | |
| CCTCCACTATCTCCATCTCA+TGG | - | chr7.4:1906383-1906402 | None:intergenic | 50.0% | |
| CTGCGAGTAGTGGTGAATCT+GGG | + | chr7.4:1906217-1906236 | MS.gene22870:CDS | 50.0% | |
| GCAAAGGTCTCCTCATTCCA+TGG | - | chr7.4:1906569-1906588 | None:intergenic | 50.0% | |
| GCAGAGATCCTTGCCTGATA+TGG | + | chr7.4:1906845-1906864 | MS.gene22870:CDS | 50.0% | |
| GGATGCCTGATGAGGATAGA+AGG | + | chr7.4:1906055-1906074 | MS.gene22870:CDS | 50.0% | |
| GGTGGGGAAAGTAATTGCAG+TGG | - | chr7.4:1905812-1905831 | None:intergenic | 50.0% | |
| TACGCACAGAGGATGACTCT+TGG | + | chr7.4:1907333-1907352 | MS.gene22870:intron | 50.0% | |
| TCTCAAATGAGCTCCTTGCC+TGG | - | chr7.4:1906536-1906555 | None:intergenic | 50.0% | |
| TGCCTACAGGTGGGAATGAA+TGG | + | chr7.4:1908402-1908421 | MS.gene22870:CDS | 50.0% | |
| TGCGAGTAGTGGTGAATCTG+GGG | + | chr7.4:1906218-1906237 | MS.gene22870:CDS | 50.0% | |
| TGGAATTGGGGCAAGAGGTT+GGG | + | chr7.4:1905890-1905909 | MS.gene22870:CDS | 50.0% | |
| TGTGCCAAACCCAGAGAGTT+TGG | - | chr7.4:1908009-1908028 | None:intergenic | 50.0% | |
| TGTGTTGGAATTGGGGCAAG+AGG | + | chr7.4:1905885-1905904 | MS.gene22870:CDS | 50.0% | |
| TTGAGGCCTGATTCTGCACT+CGG | + | chr7.4:1906192-1906211 | MS.gene22870:CDS | 50.0% | |
| TTGGAATTGGGGCAAGAGGT+TGG | + | chr7.4:1905889-1905908 | MS.gene22870:CDS | 50.0% | |
| ! | ACGTTTAGTGAGAAGGGCAC+TGG | + | chr7.4:1907794-1907813 | MS.gene22870:intron | 50.0% |
| ! | ACTTTTCACCTGCACGTAGC+AGG | - | chr7.4:1908482-1908501 | None:intergenic | 50.0% |
| ! | AGGAGGCTAGTTGGCATGTT+AGG | + | chr7.4:1905929-1905948 | MS.gene22870:CDS | 50.0% |
| ! | CCATGAGATGGAGATAGTGG+AGG | + | chr7.4:1906380-1906399 | MS.gene22870:CDS | 50.0% |
| !! | CGTTTAGTGAGAAGGGCACT+GGG | + | chr7.4:1907795-1907814 | MS.gene22870:intron | 50.0% |
| AAATGAGCTCCTTGCCTGGC+TGG | - | chr7.4:1906532-1906551 | None:intergenic | 55.0% | |
| ACGAATGGCTGCTACAGCAC+CGG | - | chr7.4:1906247-1906266 | None:intergenic | 55.0% | |
| ACTACCGCTAGACCAAGCAC+AGG | - | chr7.4:1907760-1907779 | None:intergenic | 55.0% | |
| AGAACAGTCCTGCTACGTGC+AGG | + | chr7.4:1908471-1908490 | MS.gene22870:CDS | 55.0% | |
| AGTGGAGGTAGTTGCTGACC+AGG | + | chr7.4:1906395-1906414 | MS.gene22870:CDS | 55.0% | |
| AGTGGTGAATCTGGGGACTC+CGG | + | chr7.4:1906225-1906244 | MS.gene22870:CDS | 55.0% | |
| AGTTGCTGACCAGGTTGCTG+TGG | + | chr7.4:1906404-1906423 | MS.gene22870:CDS | 55.0% | |
| CTGAAGCTTAGGCCCTCCTT+AGG | - | chr7.4:1907137-1907156 | None:intergenic | 55.0% | |
| GCAAGAAGCTTCCCTCATCG+TGG | - | chr7.4:1906775-1906794 | None:intergenic | 55.0% | |
| GCTGCGAGTAGTGGTGAATC+TGG | + | chr7.4:1906216-1906235 | MS.gene22870:CDS | 55.0% | |
| GGATGTTGACCCGCGAGATT+AGG | + | chr7.4:1905950-1905969 | MS.gene22870:CDS | 55.0% | |
| TCAGCCTGTGCTTGGTCTAG+CGG | + | chr7.4:1907753-1907772 | MS.gene22870:intron | 55.0% | |
| TTTGTGCCTGTTGCAACGCC+CGG | - | chr7.4:1906494-1906513 | None:intergenic | 55.0% | |
| ! | GCTTTGGACCCACCATGAGA+TGG | + | chr7.4:1906368-1906387 | MS.gene22870:CDS | 55.0% |
| ! | TGCGGTTTGGATGCCTGATG+AGG | + | chr7.4:1906047-1906066 | MS.gene22870:CDS | 55.0% |
| !!! | GCAAGGGGGTGTCGATTTTG+AGG | + | chr7.4:1906175-1906194 | MS.gene22870:CDS | 55.0% |
| CAATGATGGCCAGCCAGGCA+AGG | + | chr7.4:1906520-1906539 | MS.gene22870:CDS | 60.0% | |
| GAGACAAGGCCACAGCAACC+TGG | - | chr7.4:1906416-1906435 | None:intergenic | 60.0% | |
| GCAGCTCCGAGTGCAGAATC+AGG | - | chr7.4:1906201-1906220 | None:intergenic | 60.0% | |
| GCATGCAATGATGGCCAGCC+AGG | + | chr7.4:1906515-1906534 | MS.gene22870:CDS | 60.0% | |
| ! | GCAAAACCGGGCGTTGCAAC+AGG | + | chr7.4:1906485-1906504 | MS.gene22870:CDS | 60.0% |
| GCACTCGGAGCTGCGAGTAG+TGG | + | chr7.4:1906207-1906226 | MS.gene22870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1905488 | 1908506 | 1905488 | ID=MS.gene22870 |
| chr7.4 | mRNA | 1905488 | 1908506 | 1905488 | ID=MS.gene22870.t1;Parent=MS.gene22870 |
| chr7.4 | exon | 1905488 | 1905564 | 1905488 | ID=MS.gene22870.t1.exon1;Parent=MS.gene22870.t1 |
| chr7.4 | CDS | 1905488 | 1905564 | 1905488 | ID=cds.MS.gene22870.t1;Parent=MS.gene22870.t1 |
| chr7.4 | exon | 1905642 | 1906886 | 1905642 | ID=MS.gene22870.t1.exon2;Parent=MS.gene22870.t1 |
| chr7.4 | CDS | 1905642 | 1906886 | 1905642 | ID=cds.MS.gene22870.t1;Parent=MS.gene22870.t1 |
| chr7.4 | exon | 1906974 | 1907178 | 1906974 | ID=MS.gene22870.t1.exon3;Parent=MS.gene22870.t1 |
| chr7.4 | CDS | 1906974 | 1907178 | 1906974 | ID=cds.MS.gene22870.t1;Parent=MS.gene22870.t1 |
| chr7.4 | exon | 1907979 | 1908506 | 1907979 | ID=MS.gene22870.t1.exon4;Parent=MS.gene22870.t1 |
| chr7.4 | CDS | 1907979 | 1908506 | 1907979 | ID=cds.MS.gene22870.t1;Parent=MS.gene22870.t1 |
| Gene Sequence |
| Protein sequence |
