AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059103


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059103.t1 MTR_1g009010 99.762 421 1 0 1 421 1 421 0.0 851
MS.gene059103.t1 MTR_3g109300 93.079 419 29 0 2 420 252 670 0.0 770
MS.gene059103.t1 MTR_7g087530 24.251 334 234 6 55 378 76 400 2.25e-21 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059103.t1 AT1G29150 86.265 415 56 1 7 421 6 419 0.0 704
MS.gene059103.t1 AT1G29150 86.265 415 56 1 7 421 6 419 0.0 704
MS.gene059103.t1 AT2G26990 21.690 355 259 7 34 378 55 400 5.21e-16 80.1

Find 93 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAATTTCAGGGATCTTT+TGG 0.192366 1.2:-10980294 None:intergenic
AAGCAGTTTCAAATAATTTC+AGG 0.248613 1.2:-10980304 None:intergenic
TACACAGCAACATGTATTTC+AGG 0.261616 1.2:-10980160 None:intergenic
GCAATATCTTGGACCTGATT+TGG 0.308447 1.2:+10980241 MS.gene059103:CDS
ATATTGCAGGCCTGCTTTAG+AGG 0.337336 1.2:-10980225 None:intergenic
TCTTTCATGCGCAGAGCATC+AGG 0.340066 1.2:-10979531 None:intergenic
TTCAGGCTAAAGACGGCTTT+GGG 0.358755 1.2:-10980143 None:intergenic
CAAGAAGTTCGCTGGGACAT+TGG 0.366159 1.2:+10980523 MS.gene059103:CDS
GCTTTCATTGCATCCAAATC+AGG 0.369042 1.2:-10980254 None:intergenic
TAGAAACCATTTCTAATGTT+GGG 0.370156 1.2:+10980612 MS.gene059103:CDS
GAAATGGTTTCTAAAGTTGC+AGG 0.374373 1.2:-10980602 None:intergenic
TTTCAGGCTAAAGACGGCTT+TGG 0.375816 1.2:-10980144 None:intergenic
CAAGCTTTGACTCTCCTTAG+TGG 0.388037 1.2:+10979846 MS.gene059103:CDS
GACTTTCCCAACATTAGAAA+TGG 0.391872 1.2:-10980618 None:intergenic
CCTTCTCAGGCAAGAGAATA+GGG 0.395870 1.2:+10979578 MS.gene059103:CDS
AATCCCACTCTGCAAATCTA+TGG 0.395909 1.2:-10980039 None:intergenic
CTTTCGCTCCACGTGATCAA+TGG 0.400421 1.2:-10980480 None:intergenic
CGAGACTTCAAGGCACAGTT+GGG 0.400670 1.2:+10980329 MS.gene059103:CDS
TTTGACTCTCCTTAGTGGCT+TGG 0.409710 1.2:+10979851 MS.gene059103:CDS
AACTGCTTTACGAGACTTCA+AGG 0.415681 1.2:+10980319 MS.gene059103:CDS
TACTCTTCTGATGGAAAGTA+AGG 0.419643 1.2:+10979815 MS.gene059103:CDS
CAAACCTCACCGACCTTCTC+AGG 0.419854 1.2:+10979565 MS.gene059103:CDS
ATCCCTGTATGATACCCTTC+TGG 0.426885 1.2:+10980382 MS.gene059103:CDS
AAAGCAGGCCTGCAATATCT+TGG 0.428220 1.2:+10980230 MS.gene059103:CDS
TCCATTCTTTATCGTGTACT+TGG 0.428345 1.2:+10979492 MS.gene059103:CDS
GCTTGGTCAAAGAGGTTAGA+AGG 0.428699 1.2:+10979868 MS.gene059103:CDS
TTAGAAACCATTTCTAATGT+TGG 0.430658 1.2:+10980611 MS.gene059103:CDS
ACCTTCTCAGGCAAGAGAAT+AGG 0.449371 1.2:+10979577 MS.gene059103:CDS
GTCTATTGCTCAGGCATTGG+AGG 0.453941 1.2:+10979446 MS.gene059103:CDS
GAGATCTCATGTCATTATCT+TGG 0.457490 1.2:-10980666 None:intergenic
AGCAGTTTCAAATAATTTCA+GGG 0.458625 1.2:-10980303 None:intergenic
AATTTCACTATGCAAAGAAA+TGG 0.464269 1.2:+10979731 MS.gene059103:CDS
AGCTGTTCTTGCAGCTGTGA+GGG 0.469625 1.2:-10979979 None:intergenic
GCAATTTCAACCCTTGAGAA+TGG 0.470337 1.2:-10980431 None:intergenic
CCTCTTTGACCAAGCCACTA+AGG 0.474592 1.2:-10979860 None:intergenic
GCTCCAGAAGGGTATCATAC+AGG 0.475823 1.2:-10980385 None:intergenic
TTTCGCTCCACGTGATCAAT+GGG 0.485219 1.2:-10980479 None:intergenic
AATCAGGTCCAAGATATTGC+AGG 0.487957 1.2:-10980238 None:intergenic
GATTCTGTTGCTAAAATACC+AGG 0.490110 1.2:+10979693 MS.gene059103:CDS
GGGATGATCCAATCGTTCAT+AGG 0.490676 1.2:+10980351 MS.gene059103:CDS
TGCTCTGCGCATGAAAGAGC+AGG 0.492288 1.2:+10979536 MS.gene059103:CDS
CCCTATTCTCTTGCCTGAGA+AGG 0.492528 1.2:-10979578 None:intergenic
CACAACAGAGTCTATTGCTC+AGG 0.495213 1.2:+10979437 MS.gene059103:CDS
AGAGTCTATTGCTCAGGCAT+TGG 0.499267 1.2:+10979443 MS.gene059103:CDS
ACCAAGTACACGATAAAGAA+TGG 0.500491 1.2:-10979493 None:intergenic
CAGCTGTTCTTGCAGCTGTG+AGG 0.517302 1.2:-10979980 None:intergenic
CTTTCTGAGGCAGCGAATTG+AGG 0.519044 1.2:+10979782 MS.gene059103:CDS
GTCAAGTGCCTATGAACGAT+TGG 0.521697 1.2:-10980359 None:intergenic
GGGACATTGGATCAAGGTGC+TGG 0.531380 1.2:+10980536 MS.gene059103:CDS
TCTATGGCACCTTGTTGAGC+TGG 0.543072 1.2:-10980023 None:intergenic
GCAATAGACTCTGTTGTGGC+AGG 0.543654 1.2:-10979432 None:intergenic
CTCCAGAAGGGTATCATACA+GGG 0.544409 1.2:-10980384 None:intergenic
CTCAATTCGCTGCCTCAGAA+AGG 0.545619 1.2:-10979781 None:intergenic
TGCAAAGATTCTGCTCCAGA+AGG 0.549152 1.2:-10980397 None:intergenic
CATGTTGCTGTGTAAGATCA+TGG 0.549562 1.2:+10980169 MS.gene059103:CDS
CGAGCTTCCCATTGATCACG+TGG 0.562921 1.2:+10980472 MS.gene059103:CDS
ACGAGACTTCAAGGCACAGT+TGG 0.565359 1.2:+10980328 MS.gene059103:CDS
CCTTAGTGGCTTGGTCAAAG+AGG 0.571283 1.2:+10979860 MS.gene059103:CDS
AGAGCATCAGGGGATGAAGA+AGG 0.572998 1.2:-10979519 None:intergenic
GATTGATTGAACCATTCTCA+AGG 0.573343 1.2:+10980420 MS.gene059103:CDS
GATTCTTCATGCTGAAGAGA+AGG 0.574447 1.2:+10980058 MS.gene059103:CDS
GTGCCATAGATTTGCAGAGT+GGG 0.575197 1.2:+10980036 MS.gene059103:CDS
TTCGCTGGGACATTGGATCA+AGG 0.575199 1.2:+10980530 MS.gene059103:CDS
GCAAGTCTATGTCTACAAGT+AGG 0.577240 1.2:-10979905 None:intergenic
CTTTCATGCGCAGAGCATCA+GGG 0.581958 1.2:-10979530 None:intergenic
GGAATCATATCCTCTAAAGC+AGG 0.583289 1.2:+10980215 MS.gene059103:CDS
TAGACTCTGTTGTGGCAGGA+AGG 0.584069 1.2:-10979428 None:intergenic
CATGTATTTCAGGCTAAAGA+CGG 0.589827 1.2:-10980150 None:intergenic
AAGGCTTGCTACTCTTCTGA+TGG 0.595479 1.2:+10979806 MS.gene059103:CDS
TGAGGCAGCGAATTGAGGCA+AGG 0.595879 1.2:+10979787 MS.gene059103:CDS
AGTCAAGCTGATGATGTGGC+TGG 0.596537 1.2:+10980194 MS.gene059103:CDS
ATGGCACCTTGTTGAGCTGG+TGG 0.598642 1.2:-10980020 None:intergenic
TTCTAATGTTGGGAAAGTCG+TGG 0.601063 1.2:+10980622 MS.gene059103:CDS
ATTTGTAACTCAGATGTCCC+TGG 0.601526 1.2:-10979711 None:intergenic
TTTCATGCGCAGAGCATCAG+GGG 0.602569 1.2:-10979529 None:intergenic
CTTGCCTGAGAAGGTCGGTG+AGG 0.609314 1.2:-10979569 None:intergenic
ATTGATTGAACCATTCTCAA+GGG 0.609884 1.2:+10980421 MS.gene059103:CDS
GCAGCCTTCTCACTCAGTTG+AGG 0.611712 1.2:+10979613 MS.gene059103:CDS
GCAAAGATTCTGCTCCAGAA+GGG 0.618885 1.2:-10980396 None:intergenic
ATGACCTCAACTGAGTGAGA+AGG 0.626789 1.2:-10979617 None:intergenic
ATGAAAAGCGTACCTTTCTG+AGG 0.631690 1.2:+10979769 MS.gene059103:CDS
TATGCAAAGAAATGGTGCAA+TGG 0.632106 1.2:+10979739 MS.gene059103:CDS
GGCAGGAAGGAAAGAAGACA+TGG 0.635532 1.2:-10979415 None:intergenic
ATTCTCTTGCCTGAGAAGGT+CGG 0.636643 1.2:-10979574 None:intergenic
TAGGATCGTCAAAGATGACA+AGG 0.650133 1.2:-10980562 None:intergenic
GAGACTTCAAGGCACAGTTG+GGG 0.656008 1.2:+10980330 MS.gene059103:CDS
TATGTTCCACCAGCTCAACA+AGG 0.660678 1.2:+10980014 MS.gene059103:CDS
GGTTAGTCAAGCTGATGATG+TGG 0.670365 1.2:+10980190 MS.gene059103:CDS
AAAACTGCAAAGATTGTGAG+GGG 0.672793 1.2:+10979663 MS.gene059103:CDS
ATTCTGTTGCTAAAATACCA+GGG 0.677431 1.2:+10979694 MS.gene059103:CDS
AGACTTCAAGGCACAGTTGG+GGG 0.696743 1.2:+10980331 MS.gene059103:CDS
CTGAGCAATAGACTCTGTTG+TGG 0.698808 1.2:-10979436 None:intergenic
GGTGCCATAGATTTGCAGAG+TGG 0.753705 1.2:+10980035 MS.gene059103:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGCAGTTTCAAATAATTTC+AGG - chr1.2:10980307-10980326 None:intergenic 25.0%
! AATTTCACTATGCAAAGAAA+TGG + chr1.2:10979731-10979750 MS.gene059103:CDS 25.0%
! AGCAGTTTCAAATAATTTCA+GGG - chr1.2:10980306-10980325 None:intergenic 25.0%
! TAGAAACCATTTCTAATGTT+GGG + chr1.2:10980612-10980631 MS.gene059103:CDS 25.0%
! TTAGAAACCATTTCTAATGT+TGG + chr1.2:10980611-10980630 MS.gene059103:CDS 25.0%
!! AAATAATTTCAGGGATCTTT+TGG - chr1.2:10980297-10980316 None:intergenic 25.0%
AAAAACTGCAAAGATTGTGA+GGG + chr1.2:10979662-10979681 MS.gene059103:CDS 30.0%
ATTCTGTTGCTAAAATACCA+GGG + chr1.2:10979694-10979713 MS.gene059103:CDS 30.0%
ATTGATTGAACCATTCTCAA+GGG + chr1.2:10980421-10980440 MS.gene059103:CDS 30.0%
! GGATATATAGCATCAGTTTT+AGG - chr1.2:10980584-10980603 None:intergenic 30.0%
!!! TGCTTTGGGAAGATTTTTTA+AGG - chr1.2:10979952-10979971 None:intergenic 30.0%
AAAACTGCAAAGATTGTGAG+GGG + chr1.2:10979663-10979682 MS.gene059103:CDS 35.0%
ACCAAGTACACGATAAAGAA+TGG - chr1.2:10979496-10979515 None:intergenic 35.0%
CAAAAACTGCAAAGATTGTG+AGG + chr1.2:10979661-10979680 MS.gene059103:CDS 35.0%
CATGTATTTCAGGCTAAAGA+CGG - chr1.2:10980153-10980172 None:intergenic 35.0%
GACTTTCCCAACATTAGAAA+TGG - chr1.2:10980621-10980640 None:intergenic 35.0%
GATTCTGTTGCTAAAATACC+AGG + chr1.2:10979693-10979712 MS.gene059103:CDS 35.0%
GATTGATTGAACCATTCTCA+AGG + chr1.2:10980420-10980439 MS.gene059103:CDS 35.0%
TACACAGCAACATGTATTTC+AGG - chr1.2:10980163-10980182 None:intergenic 35.0%
TACTCTTCTGATGGAAAGTA+AGG + chr1.2:10979815-10979834 MS.gene059103:CDS 35.0%
TATGCAAAGAAATGGTGCAA+TGG + chr1.2:10979739-10979758 MS.gene059103:CDS 35.0%
TCCATTCTTTATCGTGTACT+TGG + chr1.2:10979492-10979511 MS.gene059103:CDS 35.0%
! AATCTTTGCAGTTTTTGCCT+TGG - chr1.2:10979658-10979677 None:intergenic 35.0%
! ATCTTTGCAGTTTTTGCCTT+GGG - chr1.2:10979657-10979676 None:intergenic 35.0%
! ATTCTTTTCCTTGATTCCCA+AGG + chr1.2:10979638-10979657 MS.gene059103:CDS 35.0%
! ATTTTAGACAAGAAGTTCGC+TGG + chr1.2:10980515-10980534 MS.gene059103:CDS 35.0%
! TTTTAGACAAGAAGTTCGCT+GGG + chr1.2:10980516-10980535 MS.gene059103:CDS 35.0%
!! GAAATGGTTTCTAAAGTTGC+AGG - chr1.2:10980605-10980624 None:intergenic 35.0%
AACTGCTTTACGAGACTTCA+AGG + chr1.2:10980319-10980338 MS.gene059103:CDS 40.0%
AATCAGGTCCAAGATATTGC+AGG - chr1.2:10980241-10980260 None:intergenic 40.0%
AATCCCACTCTGCAAATCTA+TGG - chr1.2:10980042-10980061 None:intergenic 40.0%
ATTTGTAACTCAGATGTCCC+TGG - chr1.2:10979714-10979733 None:intergenic 40.0%
CATGTTGCTGTGTAAGATCA+TGG + chr1.2:10980169-10980188 MS.gene059103:CDS 40.0%
GATTCTTCATGCTGAAGAGA+AGG + chr1.2:10980058-10980077 MS.gene059103:CDS 40.0%
GCAAGTCTATGTCTACAAGT+AGG - chr1.2:10979908-10979927 None:intergenic 40.0%
GCAATATCTTGGACCTGATT+TGG + chr1.2:10980241-10980260 MS.gene059103:CDS 40.0%
GCAATTTCAACCCTTGAGAA+TGG - chr1.2:10980434-10980453 None:intergenic 40.0%
GCTTTCATTGCATCCAAATC+AGG - chr1.2:10980257-10980276 None:intergenic 40.0%
TAGGATCGTCAAAGATGACA+AGG - chr1.2:10980565-10980584 None:intergenic 40.0%
TTCTAATGTTGGGAAAGTCG+TGG + chr1.2:10980622-10980641 MS.gene059103:CDS 40.0%
! AGTTTTTGCCTTGGGAATCA+AGG - chr1.2:10979649-10979668 None:intergenic 40.0%
! ATGAAAAGCGTACCTTTCTG+AGG + chr1.2:10979769-10979788 MS.gene059103:CDS 40.0%
! TCGTGGACAGTCTTTTTGTT+AGG + chr1.2:10980639-10980658 MS.gene059103:CDS 40.0%
!! GGAATCATATCCTCTAAAGC+AGG + chr1.2:10980215-10980234 MS.gene059103:CDS 40.0%
AAAGCAGGCCTGCAATATCT+TGG + chr1.2:10980230-10980249 MS.gene059103:CDS 45.0%
ACCTTCTCAGGCAAGAGAAT+AGG + chr1.2:10979577-10979596 MS.gene059103:CDS 45.0%
AGAGTCTATTGCTCAGGCAT+TGG + chr1.2:10979443-10979462 MS.gene059103:CDS 45.0%
ATATTGCAGGCCTGCTTTAG+AGG - chr1.2:10980228-10980247 None:intergenic 45.0%
ATCCCTGTATGATACCCTTC+TGG + chr1.2:10980382-10980401 MS.gene059103:CDS 45.0%
ATGACCTCAACTGAGTGAGA+AGG - chr1.2:10979620-10979639 None:intergenic 45.0%
ATTCTCTTGCCTGAGAAGGT+CGG - chr1.2:10979577-10979596 None:intergenic 45.0%
CACAACAGAGTCTATTGCTC+AGG + chr1.2:10979437-10979456 MS.gene059103:CDS 45.0%
CCTTCTCAGGCAAGAGAATA+GGG + chr1.2:10979578-10979597 MS.gene059103:CDS 45.0%
CTGAGCAATAGACTCTGTTG+TGG - chr1.2:10979439-10979458 None:intergenic 45.0%
GCAAAGATTCTGCTCCAGAA+GGG - chr1.2:10980399-10980418 None:intergenic 45.0%
GCTTGGTCAAAGAGGTTAGA+AGG + chr1.2:10979868-10979887 MS.gene059103:CDS 45.0%
GGGATGATCCAATCGTTCAT+AGG + chr1.2:10980351-10980370 MS.gene059103:CDS 45.0%
GTCAAGTGCCTATGAACGAT+TGG - chr1.2:10980362-10980381 None:intergenic 45.0%
GTGCCATAGATTTGCAGAGT+GGG + chr1.2:10980036-10980055 MS.gene059103:CDS 45.0%
TATGTTCCACCAGCTCAACA+AGG + chr1.2:10980014-10980033 MS.gene059103:CDS 45.0%
TGCAAAGATTCTGCTCCAGA+AGG - chr1.2:10980400-10980419 None:intergenic 45.0%
TTCAGGCTAAAGACGGCTTT+GGG - chr1.2:10980146-10980165 None:intergenic 45.0%
TTTCAGGCTAAAGACGGCTT+TGG - chr1.2:10980147-10980166 None:intergenic 45.0%
TTTCGCTCCACGTGATCAAT+GGG - chr1.2:10980482-10980501 None:intergenic 45.0%
TTTGACTCTCCTTAGTGGCT+TGG + chr1.2:10979851-10979870 MS.gene059103:CDS 45.0%
! CAAGCTTTGACTCTCCTTAG+TGG + chr1.2:10979846-10979865 MS.gene059103:CDS 45.0%
! GGTTAGTCAAGCTGATGATG+TGG + chr1.2:10980190-10980209 MS.gene059103:CDS 45.0%
!! AAGGCTTGCTACTCTTCTGA+TGG + chr1.2:10979806-10979825 MS.gene059103:CDS 45.0%
!! CTCCAGAAGGGTATCATACA+GGG - chr1.2:10980387-10980406 None:intergenic 45.0%
ACGAGACTTCAAGGCACAGT+TGG + chr1.2:10980328-10980347 MS.gene059103:CDS 50.0%
AGACTTCAAGGCACAGTTGG+GGG + chr1.2:10980331-10980350 MS.gene059103:CDS 50.0%
AGCTGTTCTTGCAGCTGTGA+GGG - chr1.2:10979982-10980001 None:intergenic 50.0%
CAAGAAGTTCGCTGGGACAT+TGG + chr1.2:10980523-10980542 MS.gene059103:CDS 50.0%
CCCTATTCTCTTGCCTGAGA+AGG - chr1.2:10979581-10979600 None:intergenic 50.0%
CCTCTTTGACCAAGCCACTA+AGG - chr1.2:10979863-10979882 None:intergenic 50.0%
CGAGACTTCAAGGCACAGTT+GGG + chr1.2:10980329-10980348 MS.gene059103:CDS 50.0%
CTCAATTCGCTGCCTCAGAA+AGG - chr1.2:10979784-10979803 None:intergenic 50.0%
CTTTCGCTCCACGTGATCAA+TGG - chr1.2:10980483-10980502 None:intergenic 50.0%
GAGACTTCAAGGCACAGTTG+GGG + chr1.2:10980330-10980349 MS.gene059103:CDS 50.0%
GCAATAGACTCTGTTGTGGC+AGG - chr1.2:10979435-10979454 None:intergenic 50.0%
TAGACTCTGTTGTGGCAGGA+AGG - chr1.2:10979431-10979450 None:intergenic 50.0%
TCTATGGCACCTTGTTGAGC+TGG - chr1.2:10980026-10980045 None:intergenic 50.0%
TTCGCTGGGACATTGGATCA+AGG + chr1.2:10980530-10980549 MS.gene059103:CDS 50.0%
! AGAGCATCAGGGGATGAAGA+AGG - chr1.2:10979522-10979541 None:intergenic 50.0%
! AGTCAAGCTGATGATGTGGC+TGG + chr1.2:10980194-10980213 MS.gene059103:CDS 50.0%
! CTTTCATGCGCAGAGCATCA+GGG - chr1.2:10979533-10979552 None:intergenic 50.0%
! GGTGCCATAGATTTGCAGAG+TGG + chr1.2:10980035-10980054 MS.gene059103:CDS 50.0%
! GTGAGGGCAGCTTTTGCTTT+GGG - chr1.2:10979966-10979985 None:intergenic 50.0%
! TCTTTCATGCGCAGAGCATC+AGG - chr1.2:10979534-10979553 None:intergenic 50.0%
! TGTGAGGGCAGCTTTTGCTT+TGG - chr1.2:10979967-10979986 None:intergenic 50.0%
! TTTCATGCGCAGAGCATCAG+GGG - chr1.2:10979532-10979551 None:intergenic 50.0%
!! CCTTAGTGGCTTGGTCAAAG+AGG + chr1.2:10979860-10979879 MS.gene059103:CDS 50.0%
!! CTTTCTGAGGCAGCGAATTG+AGG + chr1.2:10979782-10979801 MS.gene059103:CDS 50.0%
!! GCTCCAGAAGGGTATCATAC+AGG - chr1.2:10980388-10980407 None:intergenic 50.0%
!! GTCTATTGCTCAGGCATTGG+AGG + chr1.2:10979446-10979465 MS.gene059103:CDS 50.0%
ATGGCACCTTGTTGAGCTGG+TGG - chr1.2:10980023-10980042 None:intergenic 55.0%
CAAACCTCACCGACCTTCTC+AGG + chr1.2:10979565-10979584 MS.gene059103:CDS 55.0%
CAGCTGTTCTTGCAGCTGTG+AGG - chr1.2:10979983-10980002 None:intergenic 55.0%
CGAGCTTCCCATTGATCACG+TGG + chr1.2:10980472-10980491 MS.gene059103:CDS 55.0%
GCAGCCTTCTCACTCAGTTG+AGG + chr1.2:10979613-10979632 MS.gene059103:CDS 55.0%
GGGACATTGGATCAAGGTGC+TGG + chr1.2:10980536-10980555 MS.gene059103:CDS 55.0%
TGAGGCAGCGAATTGAGGCA+AGG + chr1.2:10979787-10979806 MS.gene059103:CDS 55.0%
TGCTCTGCGCATGAAAGAGC+AGG + chr1.2:10979536-10979555 MS.gene059103:CDS 55.0%
CTTGCCTGAGAAGGTCGGTG+AGG - chr1.2:10979572-10979591 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 10979417 10980682 10979417 ID=MS.gene059103
chr1.2 mRNA 10979417 10980682 10979417 ID=MS.gene059103.t1;Parent=MS.gene059103
chr1.2 exon 10979417 10980682 10979417 ID=MS.gene059103.t1.exon1;Parent=MS.gene059103.t1
chr1.2 CDS 10979417 10980682 10979417 ID=cds.MS.gene059103.t1;Parent=MS.gene059103.t1
Gene Sequence

>MS.gene059103

ATGTCTTCTTTCCTTCCTGCCACAACAGAGTCTATTGCTCAGGCATTGGAGGCTAAAGACGCATCTGAGTCTATCTCCATTCTTTATCGTGTACTTGGTGATCCTTCTTCATCCCCTGATGCTCTGCGCATGAAAGAGCAGGCTATCACAAACCTCACCGACCTTCTCAGGCAAGAGAATAGGGCAGAAGATCTGCGCAGCCTTCTCACTCAGTTGAGGTCATTCTTTTCCTTGATTCCCAAGGCAAAAACTGCAAAGATTGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCAGGGACATCTGAGTTACAAATTTCACTATGCAAAGAAATGGTGCAATGGACTCGCGATGAAAAGCGTACCTTTCTGAGGCAGCGAATTGAGGCAAGGCTTGCTACTCTTCTGATGGAAAGTAAGGAATATTCACAAGCTTTGACTCTCCTTAGTGGCTTGGTCAAAGAGGTTAGAAGGCTAGATGACAAACTCCTACTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTAAAAAATCTTCCCAAAGCAAAAGCTGCCCTCACAGCTGCAAGAACAGCTGCAAATGCTATTTATGTTCCACCAGCTCAACAAGGTGCCATAGATTTGCAGAGTGGGATTCTTCATGCTGAAGAGAAGGATTACAAAACTGCATACAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCCAAAGCCGTCTTTAGCCTGAAATACATGTTGCTGTGTAAGATCATGGTTAGTCAAGCTGATGATGTGGCTGGAATCATATCCTCTAAAGCAGGCCTGCAATATCTTGGACCTGATTTGGATGCAATGAAAGCTGTTGCAGATGCTCATTCCAAAAGATCCCTGAAATTATTTGAAACTGCTTTACGAGACTTCAAGGCACAGTTGGGGGATGATCCAATCGTTCATAGGCACTTGACATCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGCAGATTGATTGAACCATTCTCAAGGGTTGAAATTGCACATATTGCTGAACTTATCGAGCTTCCCATTGATCACGTGGAGCGAAAGATGTCTCAGATGATTTTAGACAAGAAGTTCGCTGGGACATTGGATCAAGGTGCTGGATGCCTTGTCATCTTTGACGATCCTAAAACTGATGCTATATATCCTGCAACTTTAGAAACCATTTCTAATGTTGGGAAAGTCGTGGACAGTCTTTTTGTTAGGTCTGCCAAGATAATGACATGA

Protein sequence

>MS.gene059103.t1

MSSFLPATTESIAQALEAKDASESISILYRVLGDPSSSPDALRMKEQAITNLTDLLRQENRAEDLRSLLTQLRSFFSLIPKAKTAKIVRGIIDSVAKIPGTSELQISLCKEMVQWTRDEKRTFLRQRIEARLATLLMESKEYSQALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLKNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFETALRDFKAQLGDDPIVHRHLTSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLFVRSAKIMT