Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059103.t1 | XP_003588599.1 | 99.8 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 6.90E-225 | 789.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059103.t1 | Q9LP45 | 86.3 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 2.9e-195 | 682.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059103.t1 | G7I549 | 99.8 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 5.0e-225 | 789.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene059103 | -0.804449 | 2.15E-49 | -1.69E-46 |
MS.gene050170 | MS.gene059103 | -0.824702 | 6.99E-54 | -1.69E-46 |
MS.gene050504 | MS.gene059103 | -0.815793 | 7.70E-52 | -1.69E-46 |
MS.gene050577 | MS.gene059103 | -0.823435 | 1.39E-53 | -1.69E-46 |
MS.gene050699 | MS.gene059103 | -0.821864 | 3.22E-53 | -1.69E-46 |
MS.gene052015 | MS.gene059103 | 0.879649 | 1.05E-69 | -1.69E-46 |
MS.gene052503 | MS.gene059103 | -0.804781 | 1.83E-49 | -1.69E-46 |
MS.gene052823 | MS.gene059103 | -0.808528 | 2.96E-50 | -1.69E-46 |
MS.gene052825 | MS.gene059103 | -0.815928 | 7.19E-52 | -1.69E-46 |
MS.gene053203 | MS.gene059103 | -0.834177 | 3.48E-56 | -1.69E-46 |
MS.gene05470 | MS.gene059103 | -0.839985 | 1.14E-57 | -1.69E-46 |
MS.gene054851 | MS.gene059103 | 0.818106 | 2.33E-52 | -1.69E-46 |
MS.gene055362 | MS.gene059103 | -0.802793 | 4.74E-49 | -1.69E-46 |
MS.gene055577 | MS.gene059103 | -0.820374 | 7.09E-53 | -1.69E-46 |
MS.gene055719 | MS.gene059103 | 0.820685 | 6.02E-53 | -1.69E-46 |
MS.gene056610 | MS.gene059103 | -0.800687 | 1.28E-48 | -1.69E-46 |
MS.gene057658 | MS.gene059103 | -0.811872 | 5.63E-51 | -1.69E-46 |
MS.gene05837 | MS.gene059103 | -0.812543 | 4.02E-51 | -1.69E-46 |
MS.gene058544 | MS.gene059103 | -0.826506 | 2.61E-54 | -1.69E-46 |
MS.gene058838 | MS.gene059103 | -0.809535 | 1.80E-50 | -1.69E-46 |
MS.gene059023 | MS.gene059103 | -0.827365 | 1.63E-54 | -1.69E-46 |
MS.gene059103 | MS.gene059480 | 0.994307 | 3.39E-206 | -1.69E-46 |
MS.gene059103 | MS.gene059756 | -0.808913 | 2.45E-50 | -1.69E-46 |
MS.gene059103 | MS.gene06077 | -0.836886 | 7.19E-57 | -1.69E-46 |
MS.gene059103 | MS.gene061340 | -0.800879 | 1.17E-48 | -1.69E-46 |
MS.gene059103 | MS.gene061360 | -0.856329 | 3.46E-62 | -1.69E-46 |
MS.gene059103 | MS.gene062332 | -0.805565 | 1.26E-49 | -1.69E-46 |
MS.gene059103 | MS.gene064396 | -0.821396 | 4.13E-53 | -1.69E-46 |
MS.gene059103 | MS.gene064707 | -0.827393 | 1.60E-54 | -1.69E-46 |
MS.gene059103 | MS.gene065675 | -0.802379 | 5.77E-49 | -1.69E-46 |
MS.gene059103 | MS.gene066003 | -0.802754 | 4.83E-49 | -1.69E-46 |
MS.gene059103 | MS.gene066309 | 0.824854 | 6.44E-54 | -1.69E-46 |
MS.gene059103 | MS.gene066359 | 0.814792 | 1.29E-51 | -1.69E-46 |
MS.gene059103 | MS.gene067060 | -0.800568 | 1.36E-48 | -1.69E-46 |
MS.gene059103 | MS.gene067479 | -0.81751 | 3.18E-52 | -1.69E-46 |
MS.gene059103 | MS.gene067806 | -0.832948 | 7.06E-56 | -1.69E-46 |
MS.gene059103 | MS.gene068074 | 0.818074 | 2.37E-52 | -1.69E-46 |
MS.gene059103 | MS.gene068820 | -0.83874 | 2.40E-57 | -1.69E-46 |
MS.gene059103 | MS.gene069593 | -0.842875 | 1.98E-58 | -1.69E-46 |
MS.gene059103 | MS.gene069855 | -0.865205 | 6.99E-65 | -1.69E-46 |
MS.gene059103 | MS.gene072795 | 0.828155 | 1.05E-54 | -1.69E-46 |
MS.gene059103 | MS.gene07329 | -0.82704 | 1.95E-54 | -1.69E-46 |
MS.gene059103 | MS.gene074109 | -0.817322 | 3.50E-52 | -1.69E-46 |
MS.gene059103 | MS.gene074291 | -0.827109 | 1.88E-54 | -1.69E-46 |
MS.gene059103 | MS.gene08322 | 0.856076 | 4.11E-62 | -1.69E-46 |
MS.gene059103 | MS.gene08663 | 0.825177 | 5.40E-54 | -1.69E-46 |
MS.gene059103 | MS.gene08918 | 0.861801 | 7.95E-64 | -1.69E-46 |
MS.gene059103 | MS.gene08919 | 0.864183 | 1.46E-64 | -1.69E-46 |
MS.gene059103 | MS.gene09072 | 0.813971 | 1.95E-51 | -1.69E-46 |
MS.gene059103 | MS.gene09795 | -0.823167 | 1.60E-53 | -1.69E-46 |
MS.gene059103 | MS.gene09797 | -0.822139 | 2.78E-53 | -1.69E-46 |
MS.gene059103 | MS.gene09798 | -0.831067 | 2.06E-55 | -1.69E-46 |
MS.gene059103 | MS.gene20358 | -0.817042 | 4.05E-52 | -1.69E-46 |
MS.gene059103 | MS.gene20932 | -0.851132 | 1.08E-60 | -1.69E-46 |
MS.gene059103 | MS.gene22219 | -0.808746 | 2.66E-50 | -1.69E-46 |
MS.gene059103 | MS.gene22474 | -0.835418 | 1.70E-56 | -1.69E-46 |
MS.gene059103 | MS.gene22475 | -0.807656 | 4.54E-50 | -1.69E-46 |
MS.gene059103 | MS.gene22588 | -0.811543 | 6.64E-51 | -1.69E-46 |
MS.gene059103 | MS.gene22869 | -0.825976 | 3.49E-54 | -1.69E-46 |
MS.gene059103 | MS.gene24024 | -0.822234 | 2.64E-53 | -1.69E-46 |
MS.gene059103 | MS.gene25979 | -0.804168 | 2.46E-49 | -1.69E-46 |
MS.gene059103 | MS.gene26526 | -0.802039 | 6.78E-49 | -1.69E-46 |
MS.gene059103 | MS.gene27876 | -0.819053 | 1.42E-52 | -1.69E-46 |
MS.gene059103 | MS.gene27961 | 0.801585 | 8.40E-49 | -1.69E-46 |
MS.gene059103 | MS.gene27981 | -0.836471 | 9.18E-57 | -1.69E-46 |
MS.gene059103 | MS.gene28138 | -0.802563 | 5.29E-49 | -1.69E-46 |
MS.gene059103 | MS.gene28292 | 0.826581 | 2.51E-54 | -1.69E-46 |
MS.gene059103 | MS.gene31589 | 0.957957 | 7.69E-116 | -1.69E-46 |
MS.gene059103 | MS.gene31736 | 0.833244 | 5.96E-56 | -1.69E-46 |
MS.gene059103 | MS.gene32242 | 0.80001 | 1.76E-48 | -1.69E-46 |
MS.gene059103 | MS.gene33980 | 0.841568 | 4.39E-58 | -1.69E-46 |
MS.gene059103 | MS.gene34038 | -0.834044 | 3.76E-56 | -1.69E-46 |
MS.gene059103 | MS.gene34472 | -0.80614 | 9.51E-50 | -1.69E-46 |
MS.gene059103 | MS.gene34934 | 0.844263 | 8.42E-59 | -1.69E-46 |
MS.gene059103 | MS.gene35221 | 0.82068 | 6.04E-53 | -1.69E-46 |
MS.gene059103 | MS.gene35712 | -0.825483 | 4.57E-54 | -1.69E-46 |
MS.gene059103 | MS.gene35812 | -0.831325 | 1.78E-55 | -1.69E-46 |
MS.gene059103 | MS.gene36337 | -0.865663 | 5.02E-65 | -1.69E-46 |
MS.gene059103 | MS.gene36419 | 0.80746 | 5.00E-50 | -1.69E-46 |
MS.gene059103 | MS.gene37187 | 0.801438 | 9.00E-49 | -1.69E-46 |
MS.gene059103 | MS.gene38250 | -0.815362 | 9.61E-52 | -1.69E-46 |
MS.gene059103 | MS.gene38252 | -0.809833 | 1.56E-50 | -1.69E-46 |
MS.gene059103 | MS.gene40108 | -0.80893 | 2.43E-50 | -1.69E-46 |
MS.gene059103 | MS.gene41334 | -0.831088 | 2.04E-55 | -1.69E-46 |
MS.gene059103 | MS.gene41884 | 0.830599 | 2.68E-55 | -1.69E-46 |
MS.gene059103 | MS.gene42301 | -0.849167 | 3.85E-60 | -1.69E-46 |
MS.gene059103 | MS.gene42884 | -0.824032 | 1.01E-53 | -1.69E-46 |
MS.gene059103 | MS.gene43355 | -0.80123 | 9.93E-49 | -1.69E-46 |
MS.gene059103 | MS.gene44099 | -0.843456 | 1.39E-58 | -1.69E-46 |
MS.gene059103 | MS.gene44351 | 0.815909 | 7.26E-52 | -1.69E-46 |
MS.gene059103 | MS.gene44439 | -0.868777 | 5.07E-66 | -1.69E-46 |
MS.gene059103 | MS.gene44440 | -0.845592 | 3.69E-59 | -1.69E-46 |
MS.gene059103 | MS.gene44487 | -0.802819 | 4.68E-49 | -1.69E-46 |
MS.gene059103 | MS.gene45607 | -0.867474 | 1.33E-65 | -1.69E-46 |
MS.gene059103 | MS.gene46379 | 0.804641 | 1.96E-49 | -1.69E-46 |
MS.gene059103 | MS.gene48050 | 0.808036 | 3.77E-50 | -1.69E-46 |
MS.gene059103 | MS.gene49065 | -0.84639 | 2.24E-59 | -1.69E-46 |
MS.gene059103 | MS.gene49762 | 0.820451 | 6.81E-53 | -1.69E-46 |
MS.gene059103 | MS.gene49971 | -0.849201 | 3.76E-60 | -1.69E-46 |
MS.gene059103 | MS.gene50526 | -0.812679 | 3.75E-51 | -1.69E-46 |
MS.gene059103 | MS.gene50781 | -0.833284 | 5.82E-56 | -1.69E-46 |
MS.gene059103 | MS.gene51887 | -0.838012 | 3.70E-57 | -1.69E-46 |
MS.gene059103 | MS.gene52273 | -0.83112 | 2.00E-55 | -1.69E-46 |
MS.gene059103 | MS.gene52725 | -0.808762 | 2.64E-50 | -1.69E-46 |
MS.gene059103 | MS.gene53510 | -0.801938 | 7.11E-49 | -1.69E-46 |
MS.gene059103 | MS.gene54412 | -0.807637 | 4.59E-50 | -1.69E-46 |
MS.gene059103 | MS.gene55803 | -0.818012 | 2.45E-52 | -1.69E-46 |
MS.gene059103 | MS.gene55911 | -0.801981 | 6.97E-49 | -1.69E-46 |
MS.gene059103 | MS.gene56518 | -0.801755 | 7.75E-49 | -1.69E-46 |
MS.gene059103 | MS.gene57602 | -0.813348 | 2.68E-51 | -1.69E-46 |
MS.gene059103 | MS.gene58466 | -0.845297 | 4.43E-59 | -1.69E-46 |
MS.gene059103 | MS.gene58779 | -0.818072 | 2.37E-52 | -1.69E-46 |
MS.gene059103 | MS.gene59101 | -0.802662 | 5.04E-49 | -1.69E-46 |
MS.gene059103 | MS.gene59475 | -0.828642 | 8.03E-55 | -1.69E-46 |
MS.gene059103 | MS.gene59657 | -0.833869 | 4.16E-56 | -1.69E-46 |
MS.gene059103 | MS.gene60176 | -0.868506 | 6.21E-66 | -1.69E-46 |
MS.gene059103 | MS.gene60177 | -0.865164 | 7.20E-65 | -1.69E-46 |
MS.gene059103 | MS.gene60360 | -0.833658 | 4.70E-56 | -1.69E-46 |
MS.gene059103 | MS.gene60712 | -0.81952 | 1.11E-52 | -1.69E-46 |
MS.gene059103 | MS.gene61144 | -0.868401 | 6.71E-66 | -1.69E-46 |
MS.gene059103 | MS.gene61145 | -0.866999 | 1.89E-65 | -1.69E-46 |
MS.gene059103 | MS.gene61919 | -0.809701 | 1.66E-50 | -1.69E-46 |
MS.gene059103 | MS.gene62850 | -0.817933 | 2.55E-52 | -1.69E-46 |
MS.gene059103 | MS.gene65400 | -0.839524 | 1.51E-57 | -1.69E-46 |
MS.gene059103 | MS.gene65986 | 0.806987 | 6.30E-50 | -1.69E-46 |
MS.gene059103 | MS.gene68071 | -0.802016 | 6.85E-49 | -1.69E-46 |
MS.gene059103 | MS.gene69450 | -0.82702 | 1.97E-54 | -1.69E-46 |
MS.gene059103 | MS.gene70123 | 0.828336 | 9.52E-55 | -1.69E-46 |
MS.gene059103 | MS.gene70143 | -0.821045 | 4.97E-53 | -1.69E-46 |
MS.gene059103 | MS.gene70212 | -0.816608 | 5.07E-52 | -1.69E-46 |
MS.gene059103 | MS.gene70226 | 0.801234 | 9.91E-49 | -1.69E-46 |
MS.gene059103 | MS.gene70306 | -0.807803 | 4.23E-50 | -1.69E-46 |
MS.gene059103 | MS.gene70326 | -0.817596 | 3.04E-52 | -1.69E-46 |
MS.gene059103 | MS.gene71059 | -0.805641 | 1.21E-49 | -1.69E-46 |
MS.gene059103 | MS.gene72106 | -0.815152 | 1.07E-51 | -1.69E-46 |
MS.gene059103 | MS.gene72416 | -0.813446 | 2.55E-51 | -1.69E-46 |
MS.gene059103 | MS.gene72720 | -0.824433 | 8.09E-54 | -1.69E-46 |
MS.gene059103 | MS.gene72940 | 0.800049 | 1.73E-48 | -1.69E-46 |
MS.gene059103 | MS.gene73544 | -0.812704 | 3.71E-51 | -1.69E-46 |
MS.gene059103 | MS.gene73545 | -0.815226 | 1.03E-51 | -1.69E-46 |
MS.gene059103 | MS.gene73690 | -0.824498 | 7.81E-54 | -1.69E-46 |
MS.gene059103 | MS.gene74575 | -0.803069 | 4.16E-49 | -1.69E-46 |
MS.gene059103 | MS.gene75231 | -0.820629 | 6.20E-53 | -1.69E-46 |
MS.gene059103 | MS.gene75880 | 0.806306 | 8.77E-50 | -1.69E-46 |
MS.gene059103 | MS.gene76418 | -0.803219 | 3.87E-49 | -1.69E-46 |
MS.gene059103 | MS.gene76521 | -0.884036 | 2.70E-71 | -1.69E-46 |
MS.gene059103 | MS.gene77595 | 0.834103 | 3.64E-56 | -1.69E-46 |
MS.gene059103 | MS.gene78942 | -0.84116 | 5.62E-58 | -1.69E-46 |
MS.gene059103 | MS.gene80239 | -0.808654 | 2.78E-50 | -1.69E-46 |
MS.gene059103 | MS.gene80717 | 0.816505 | 5.34E-52 | -1.69E-46 |
MS.gene059103 | MS.gene81275 | -0.806823 | 6.82E-50 | -1.69E-46 |
MS.gene059103 | MS.gene81747 | -0.82781 | 1.27E-54 | -1.69E-46 |
MS.gene059103 | MS.gene83606 | -0.816176 | 6.33E-52 | -1.69E-46 |
MS.gene059103 | MS.gene83941 | -0.80602 | 1.01E-49 | -1.69E-46 |
MS.gene059103 | MS.gene84198 | 0.812274 | 4.60E-51 | -1.69E-46 |
MS.gene059103 | MS.gene85136 | -0.863563 | 2.28E-64 | -1.69E-46 |
MS.gene059103 | MS.gene87473 | -0.810792 | 9.67E-51 | -1.69E-46 |
MS.gene059103 | MS.gene88896 | -0.84081 | 6.95E-58 | -1.69E-46 |
MS.gene059103 | MS.gene88958 | -0.829338 | 5.44E-55 | -1.69E-46 |
MS.gene059103 | MS.gene89341 | -0.802426 | 5.64E-49 | -1.69E-46 |
MS.gene059103 | MS.gene90277 | -0.814627 | 1.40E-51 | -1.69E-46 |
MS.gene059103 | MS.gene90364 | -0.818279 | 2.13E-52 | -1.69E-46 |
MS.gene059103 | MS.gene91401 | -0.800139 | 1.66E-48 | -1.69E-46 |
MS.gene059103 | MS.gene91533 | -0.817634 | 2.98E-52 | -1.69E-46 |
MS.gene059103 | MS.gene91915 | -0.803273 | 3.77E-49 | -1.69E-46 |
MS.gene059103 | MS.gene92636 | -0.823672 | 1.22E-53 | -1.69E-46 |
MS.gene059103 | MS.gene94807 | -0.825738 | 3.98E-54 | -1.69E-46 |
MS.gene059103 | MS.gene95038 | -0.80607 | 9.83E-50 | -1.69E-46 |
MS.gene059103 | MS.gene95041 | -0.8093 | 2.03E-50 | -1.69E-46 |
MS.gene059103 | MS.gene96198 | -0.806289 | 8.84E-50 | -1.69E-46 |
MS.gene059103 | MS.gene96524 | -0.800882 | 1.17E-48 | -1.69E-46 |
MS.gene059103 | MS.gene96549 | -0.82723 | 1.75E-54 | -1.69E-46 |
MS.gene059103 | MS.gene97422 | -0.844822 | 5.96E-59 | -1.69E-46 |
MS.gene059103 | MS.gene97437 | 0.856984 | 2.22E-62 | -1.69E-46 |
MS.gene059103 | MS.gene97726 | -0.829977 | 3.81E-55 | -1.69E-46 |
MS.gene059103 | MS.gene97862 | -0.800988 | 1.11E-48 | -1.69E-46 |
MS.gene059103 | MS.gene98139 | -0.800536 | 1.38E-48 | -1.69E-46 |
MS.gene059103 | MS.gene98678 | -0.824116 | 9.61E-54 | -1.69E-46 |
MS.gene059103 | MS.gene98722 | 0.874451 | 6.69E-68 | -1.69E-46 |
MS.gene059103 | MS.gene98750 | -0.80876 | 2.64E-50 | -1.69E-46 |
MS.gene059103 | MS.gene99664 | -0.815825 | 7.58E-52 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059103.t1 | MTR_1g009010 | 99.762 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 0.0 | 851 |
MS.gene059103.t1 | MTR_3g109300 | 93.079 | 419 | 29 | 0 | 2 | 420 | 252 | 670 | 0.0 | 770 |
MS.gene059103.t1 | MTR_7g087530 | 24.251 | 334 | 234 | 6 | 55 | 378 | 76 | 400 | 2.25e-21 | 96.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059103.t1 | AT1G29150 | 86.265 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 0.0 | 704 |
MS.gene059103.t1 | AT1G29150 | 86.265 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 0.0 | 704 |
MS.gene059103.t1 | AT2G26990 | 21.690 | 355 | 259 | 7 | 34 | 378 | 55 | 400 | 5.21e-16 | 80.1 |
Find 93 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATAATTTCAGGGATCTTT+TGG | 0.192366 | 1.2:-10980294 | None:intergenic |
AAGCAGTTTCAAATAATTTC+AGG | 0.248613 | 1.2:-10980304 | None:intergenic |
TACACAGCAACATGTATTTC+AGG | 0.261616 | 1.2:-10980160 | None:intergenic |
GCAATATCTTGGACCTGATT+TGG | 0.308447 | 1.2:+10980241 | MS.gene059103:CDS |
ATATTGCAGGCCTGCTTTAG+AGG | 0.337336 | 1.2:-10980225 | None:intergenic |
TCTTTCATGCGCAGAGCATC+AGG | 0.340066 | 1.2:-10979531 | None:intergenic |
TTCAGGCTAAAGACGGCTTT+GGG | 0.358755 | 1.2:-10980143 | None:intergenic |
CAAGAAGTTCGCTGGGACAT+TGG | 0.366159 | 1.2:+10980523 | MS.gene059103:CDS |
GCTTTCATTGCATCCAAATC+AGG | 0.369042 | 1.2:-10980254 | None:intergenic |
TAGAAACCATTTCTAATGTT+GGG | 0.370156 | 1.2:+10980612 | MS.gene059103:CDS |
GAAATGGTTTCTAAAGTTGC+AGG | 0.374373 | 1.2:-10980602 | None:intergenic |
TTTCAGGCTAAAGACGGCTT+TGG | 0.375816 | 1.2:-10980144 | None:intergenic |
CAAGCTTTGACTCTCCTTAG+TGG | 0.388037 | 1.2:+10979846 | MS.gene059103:CDS |
GACTTTCCCAACATTAGAAA+TGG | 0.391872 | 1.2:-10980618 | None:intergenic |
CCTTCTCAGGCAAGAGAATA+GGG | 0.395870 | 1.2:+10979578 | MS.gene059103:CDS |
AATCCCACTCTGCAAATCTA+TGG | 0.395909 | 1.2:-10980039 | None:intergenic |
CTTTCGCTCCACGTGATCAA+TGG | 0.400421 | 1.2:-10980480 | None:intergenic |
CGAGACTTCAAGGCACAGTT+GGG | 0.400670 | 1.2:+10980329 | MS.gene059103:CDS |
TTTGACTCTCCTTAGTGGCT+TGG | 0.409710 | 1.2:+10979851 | MS.gene059103:CDS |
AACTGCTTTACGAGACTTCA+AGG | 0.415681 | 1.2:+10980319 | MS.gene059103:CDS |
TACTCTTCTGATGGAAAGTA+AGG | 0.419643 | 1.2:+10979815 | MS.gene059103:CDS |
CAAACCTCACCGACCTTCTC+AGG | 0.419854 | 1.2:+10979565 | MS.gene059103:CDS |
ATCCCTGTATGATACCCTTC+TGG | 0.426885 | 1.2:+10980382 | MS.gene059103:CDS |
AAAGCAGGCCTGCAATATCT+TGG | 0.428220 | 1.2:+10980230 | MS.gene059103:CDS |
TCCATTCTTTATCGTGTACT+TGG | 0.428345 | 1.2:+10979492 | MS.gene059103:CDS |
GCTTGGTCAAAGAGGTTAGA+AGG | 0.428699 | 1.2:+10979868 | MS.gene059103:CDS |
TTAGAAACCATTTCTAATGT+TGG | 0.430658 | 1.2:+10980611 | MS.gene059103:CDS |
ACCTTCTCAGGCAAGAGAAT+AGG | 0.449371 | 1.2:+10979577 | MS.gene059103:CDS |
GTCTATTGCTCAGGCATTGG+AGG | 0.453941 | 1.2:+10979446 | MS.gene059103:CDS |
GAGATCTCATGTCATTATCT+TGG | 0.457490 | 1.2:-10980666 | None:intergenic |
AGCAGTTTCAAATAATTTCA+GGG | 0.458625 | 1.2:-10980303 | None:intergenic |
AATTTCACTATGCAAAGAAA+TGG | 0.464269 | 1.2:+10979731 | MS.gene059103:CDS |
AGCTGTTCTTGCAGCTGTGA+GGG | 0.469625 | 1.2:-10979979 | None:intergenic |
GCAATTTCAACCCTTGAGAA+TGG | 0.470337 | 1.2:-10980431 | None:intergenic |
CCTCTTTGACCAAGCCACTA+AGG | 0.474592 | 1.2:-10979860 | None:intergenic |
GCTCCAGAAGGGTATCATAC+AGG | 0.475823 | 1.2:-10980385 | None:intergenic |
TTTCGCTCCACGTGATCAAT+GGG | 0.485219 | 1.2:-10980479 | None:intergenic |
AATCAGGTCCAAGATATTGC+AGG | 0.487957 | 1.2:-10980238 | None:intergenic |
GATTCTGTTGCTAAAATACC+AGG | 0.490110 | 1.2:+10979693 | MS.gene059103:CDS |
GGGATGATCCAATCGTTCAT+AGG | 0.490676 | 1.2:+10980351 | MS.gene059103:CDS |
TGCTCTGCGCATGAAAGAGC+AGG | 0.492288 | 1.2:+10979536 | MS.gene059103:CDS |
CCCTATTCTCTTGCCTGAGA+AGG | 0.492528 | 1.2:-10979578 | None:intergenic |
CACAACAGAGTCTATTGCTC+AGG | 0.495213 | 1.2:+10979437 | MS.gene059103:CDS |
AGAGTCTATTGCTCAGGCAT+TGG | 0.499267 | 1.2:+10979443 | MS.gene059103:CDS |
ACCAAGTACACGATAAAGAA+TGG | 0.500491 | 1.2:-10979493 | None:intergenic |
CAGCTGTTCTTGCAGCTGTG+AGG | 0.517302 | 1.2:-10979980 | None:intergenic |
CTTTCTGAGGCAGCGAATTG+AGG | 0.519044 | 1.2:+10979782 | MS.gene059103:CDS |
GTCAAGTGCCTATGAACGAT+TGG | 0.521697 | 1.2:-10980359 | None:intergenic |
GGGACATTGGATCAAGGTGC+TGG | 0.531380 | 1.2:+10980536 | MS.gene059103:CDS |
TCTATGGCACCTTGTTGAGC+TGG | 0.543072 | 1.2:-10980023 | None:intergenic |
GCAATAGACTCTGTTGTGGC+AGG | 0.543654 | 1.2:-10979432 | None:intergenic |
CTCCAGAAGGGTATCATACA+GGG | 0.544409 | 1.2:-10980384 | None:intergenic |
CTCAATTCGCTGCCTCAGAA+AGG | 0.545619 | 1.2:-10979781 | None:intergenic |
TGCAAAGATTCTGCTCCAGA+AGG | 0.549152 | 1.2:-10980397 | None:intergenic |
CATGTTGCTGTGTAAGATCA+TGG | 0.549562 | 1.2:+10980169 | MS.gene059103:CDS |
CGAGCTTCCCATTGATCACG+TGG | 0.562921 | 1.2:+10980472 | MS.gene059103:CDS |
ACGAGACTTCAAGGCACAGT+TGG | 0.565359 | 1.2:+10980328 | MS.gene059103:CDS |
CCTTAGTGGCTTGGTCAAAG+AGG | 0.571283 | 1.2:+10979860 | MS.gene059103:CDS |
AGAGCATCAGGGGATGAAGA+AGG | 0.572998 | 1.2:-10979519 | None:intergenic |
GATTGATTGAACCATTCTCA+AGG | 0.573343 | 1.2:+10980420 | MS.gene059103:CDS |
GATTCTTCATGCTGAAGAGA+AGG | 0.574447 | 1.2:+10980058 | MS.gene059103:CDS |
GTGCCATAGATTTGCAGAGT+GGG | 0.575197 | 1.2:+10980036 | MS.gene059103:CDS |
TTCGCTGGGACATTGGATCA+AGG | 0.575199 | 1.2:+10980530 | MS.gene059103:CDS |
GCAAGTCTATGTCTACAAGT+AGG | 0.577240 | 1.2:-10979905 | None:intergenic |
CTTTCATGCGCAGAGCATCA+GGG | 0.581958 | 1.2:-10979530 | None:intergenic |
GGAATCATATCCTCTAAAGC+AGG | 0.583289 | 1.2:+10980215 | MS.gene059103:CDS |
TAGACTCTGTTGTGGCAGGA+AGG | 0.584069 | 1.2:-10979428 | None:intergenic |
CATGTATTTCAGGCTAAAGA+CGG | 0.589827 | 1.2:-10980150 | None:intergenic |
AAGGCTTGCTACTCTTCTGA+TGG | 0.595479 | 1.2:+10979806 | MS.gene059103:CDS |
TGAGGCAGCGAATTGAGGCA+AGG | 0.595879 | 1.2:+10979787 | MS.gene059103:CDS |
AGTCAAGCTGATGATGTGGC+TGG | 0.596537 | 1.2:+10980194 | MS.gene059103:CDS |
ATGGCACCTTGTTGAGCTGG+TGG | 0.598642 | 1.2:-10980020 | None:intergenic |
TTCTAATGTTGGGAAAGTCG+TGG | 0.601063 | 1.2:+10980622 | MS.gene059103:CDS |
ATTTGTAACTCAGATGTCCC+TGG | 0.601526 | 1.2:-10979711 | None:intergenic |
TTTCATGCGCAGAGCATCAG+GGG | 0.602569 | 1.2:-10979529 | None:intergenic |
CTTGCCTGAGAAGGTCGGTG+AGG | 0.609314 | 1.2:-10979569 | None:intergenic |
ATTGATTGAACCATTCTCAA+GGG | 0.609884 | 1.2:+10980421 | MS.gene059103:CDS |
GCAGCCTTCTCACTCAGTTG+AGG | 0.611712 | 1.2:+10979613 | MS.gene059103:CDS |
GCAAAGATTCTGCTCCAGAA+GGG | 0.618885 | 1.2:-10980396 | None:intergenic |
ATGACCTCAACTGAGTGAGA+AGG | 0.626789 | 1.2:-10979617 | None:intergenic |
ATGAAAAGCGTACCTTTCTG+AGG | 0.631690 | 1.2:+10979769 | MS.gene059103:CDS |
TATGCAAAGAAATGGTGCAA+TGG | 0.632106 | 1.2:+10979739 | MS.gene059103:CDS |
GGCAGGAAGGAAAGAAGACA+TGG | 0.635532 | 1.2:-10979415 | None:intergenic |
ATTCTCTTGCCTGAGAAGGT+CGG | 0.636643 | 1.2:-10979574 | None:intergenic |
TAGGATCGTCAAAGATGACA+AGG | 0.650133 | 1.2:-10980562 | None:intergenic |
GAGACTTCAAGGCACAGTTG+GGG | 0.656008 | 1.2:+10980330 | MS.gene059103:CDS |
TATGTTCCACCAGCTCAACA+AGG | 0.660678 | 1.2:+10980014 | MS.gene059103:CDS |
GGTTAGTCAAGCTGATGATG+TGG | 0.670365 | 1.2:+10980190 | MS.gene059103:CDS |
AAAACTGCAAAGATTGTGAG+GGG | 0.672793 | 1.2:+10979663 | MS.gene059103:CDS |
ATTCTGTTGCTAAAATACCA+GGG | 0.677431 | 1.2:+10979694 | MS.gene059103:CDS |
AGACTTCAAGGCACAGTTGG+GGG | 0.696743 | 1.2:+10980331 | MS.gene059103:CDS |
CTGAGCAATAGACTCTGTTG+TGG | 0.698808 | 1.2:-10979436 | None:intergenic |
GGTGCCATAGATTTGCAGAG+TGG | 0.753705 | 1.2:+10980035 | MS.gene059103:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAGCAGTTTCAAATAATTTC+AGG | - | chr1.2:10980307-10980326 | None:intergenic | 25.0% |
! | AATTTCACTATGCAAAGAAA+TGG | + | chr1.2:10979731-10979750 | MS.gene059103:CDS | 25.0% |
! | AGCAGTTTCAAATAATTTCA+GGG | - | chr1.2:10980306-10980325 | None:intergenic | 25.0% |
! | TAGAAACCATTTCTAATGTT+GGG | + | chr1.2:10980612-10980631 | MS.gene059103:CDS | 25.0% |
! | TTAGAAACCATTTCTAATGT+TGG | + | chr1.2:10980611-10980630 | MS.gene059103:CDS | 25.0% |
!! | AAATAATTTCAGGGATCTTT+TGG | - | chr1.2:10980297-10980316 | None:intergenic | 25.0% |
AAAAACTGCAAAGATTGTGA+GGG | + | chr1.2:10979662-10979681 | MS.gene059103:CDS | 30.0% | |
ATTCTGTTGCTAAAATACCA+GGG | + | chr1.2:10979694-10979713 | MS.gene059103:CDS | 30.0% | |
ATTGATTGAACCATTCTCAA+GGG | + | chr1.2:10980421-10980440 | MS.gene059103:CDS | 30.0% | |
! | GGATATATAGCATCAGTTTT+AGG | - | chr1.2:10980584-10980603 | None:intergenic | 30.0% |
!!! | TGCTTTGGGAAGATTTTTTA+AGG | - | chr1.2:10979952-10979971 | None:intergenic | 30.0% |
AAAACTGCAAAGATTGTGAG+GGG | + | chr1.2:10979663-10979682 | MS.gene059103:CDS | 35.0% | |
ACCAAGTACACGATAAAGAA+TGG | - | chr1.2:10979496-10979515 | None:intergenic | 35.0% | |
CAAAAACTGCAAAGATTGTG+AGG | + | chr1.2:10979661-10979680 | MS.gene059103:CDS | 35.0% | |
CATGTATTTCAGGCTAAAGA+CGG | - | chr1.2:10980153-10980172 | None:intergenic | 35.0% | |
GACTTTCCCAACATTAGAAA+TGG | - | chr1.2:10980621-10980640 | None:intergenic | 35.0% | |
GATTCTGTTGCTAAAATACC+AGG | + | chr1.2:10979693-10979712 | MS.gene059103:CDS | 35.0% | |
GATTGATTGAACCATTCTCA+AGG | + | chr1.2:10980420-10980439 | MS.gene059103:CDS | 35.0% | |
TACACAGCAACATGTATTTC+AGG | - | chr1.2:10980163-10980182 | None:intergenic | 35.0% | |
TACTCTTCTGATGGAAAGTA+AGG | + | chr1.2:10979815-10979834 | MS.gene059103:CDS | 35.0% | |
TATGCAAAGAAATGGTGCAA+TGG | + | chr1.2:10979739-10979758 | MS.gene059103:CDS | 35.0% | |
TCCATTCTTTATCGTGTACT+TGG | + | chr1.2:10979492-10979511 | MS.gene059103:CDS | 35.0% | |
! | AATCTTTGCAGTTTTTGCCT+TGG | - | chr1.2:10979658-10979677 | None:intergenic | 35.0% |
! | ATCTTTGCAGTTTTTGCCTT+GGG | - | chr1.2:10979657-10979676 | None:intergenic | 35.0% |
! | ATTCTTTTCCTTGATTCCCA+AGG | + | chr1.2:10979638-10979657 | MS.gene059103:CDS | 35.0% |
! | ATTTTAGACAAGAAGTTCGC+TGG | + | chr1.2:10980515-10980534 | MS.gene059103:CDS | 35.0% |
! | TTTTAGACAAGAAGTTCGCT+GGG | + | chr1.2:10980516-10980535 | MS.gene059103:CDS | 35.0% |
!! | GAAATGGTTTCTAAAGTTGC+AGG | - | chr1.2:10980605-10980624 | None:intergenic | 35.0% |
AACTGCTTTACGAGACTTCA+AGG | + | chr1.2:10980319-10980338 | MS.gene059103:CDS | 40.0% | |
AATCAGGTCCAAGATATTGC+AGG | - | chr1.2:10980241-10980260 | None:intergenic | 40.0% | |
AATCCCACTCTGCAAATCTA+TGG | - | chr1.2:10980042-10980061 | None:intergenic | 40.0% | |
ATTTGTAACTCAGATGTCCC+TGG | - | chr1.2:10979714-10979733 | None:intergenic | 40.0% | |
CATGTTGCTGTGTAAGATCA+TGG | + | chr1.2:10980169-10980188 | MS.gene059103:CDS | 40.0% | |
GATTCTTCATGCTGAAGAGA+AGG | + | chr1.2:10980058-10980077 | MS.gene059103:CDS | 40.0% | |
GCAAGTCTATGTCTACAAGT+AGG | - | chr1.2:10979908-10979927 | None:intergenic | 40.0% | |
GCAATATCTTGGACCTGATT+TGG | + | chr1.2:10980241-10980260 | MS.gene059103:CDS | 40.0% | |
GCAATTTCAACCCTTGAGAA+TGG | - | chr1.2:10980434-10980453 | None:intergenic | 40.0% | |
GCTTTCATTGCATCCAAATC+AGG | - | chr1.2:10980257-10980276 | None:intergenic | 40.0% | |
TAGGATCGTCAAAGATGACA+AGG | - | chr1.2:10980565-10980584 | None:intergenic | 40.0% | |
TTCTAATGTTGGGAAAGTCG+TGG | + | chr1.2:10980622-10980641 | MS.gene059103:CDS | 40.0% | |
! | AGTTTTTGCCTTGGGAATCA+AGG | - | chr1.2:10979649-10979668 | None:intergenic | 40.0% |
! | ATGAAAAGCGTACCTTTCTG+AGG | + | chr1.2:10979769-10979788 | MS.gene059103:CDS | 40.0% |
! | TCGTGGACAGTCTTTTTGTT+AGG | + | chr1.2:10980639-10980658 | MS.gene059103:CDS | 40.0% |
!! | GGAATCATATCCTCTAAAGC+AGG | + | chr1.2:10980215-10980234 | MS.gene059103:CDS | 40.0% |
AAAGCAGGCCTGCAATATCT+TGG | + | chr1.2:10980230-10980249 | MS.gene059103:CDS | 45.0% | |
ACCTTCTCAGGCAAGAGAAT+AGG | + | chr1.2:10979577-10979596 | MS.gene059103:CDS | 45.0% | |
AGAGTCTATTGCTCAGGCAT+TGG | + | chr1.2:10979443-10979462 | MS.gene059103:CDS | 45.0% | |
ATATTGCAGGCCTGCTTTAG+AGG | - | chr1.2:10980228-10980247 | None:intergenic | 45.0% | |
ATCCCTGTATGATACCCTTC+TGG | + | chr1.2:10980382-10980401 | MS.gene059103:CDS | 45.0% | |
ATGACCTCAACTGAGTGAGA+AGG | - | chr1.2:10979620-10979639 | None:intergenic | 45.0% | |
ATTCTCTTGCCTGAGAAGGT+CGG | - | chr1.2:10979577-10979596 | None:intergenic | 45.0% | |
CACAACAGAGTCTATTGCTC+AGG | + | chr1.2:10979437-10979456 | MS.gene059103:CDS | 45.0% | |
CCTTCTCAGGCAAGAGAATA+GGG | + | chr1.2:10979578-10979597 | MS.gene059103:CDS | 45.0% | |
CTGAGCAATAGACTCTGTTG+TGG | - | chr1.2:10979439-10979458 | None:intergenic | 45.0% | |
GCAAAGATTCTGCTCCAGAA+GGG | - | chr1.2:10980399-10980418 | None:intergenic | 45.0% | |
GCTTGGTCAAAGAGGTTAGA+AGG | + | chr1.2:10979868-10979887 | MS.gene059103:CDS | 45.0% | |
GGGATGATCCAATCGTTCAT+AGG | + | chr1.2:10980351-10980370 | MS.gene059103:CDS | 45.0% | |
GTCAAGTGCCTATGAACGAT+TGG | - | chr1.2:10980362-10980381 | None:intergenic | 45.0% | |
GTGCCATAGATTTGCAGAGT+GGG | + | chr1.2:10980036-10980055 | MS.gene059103:CDS | 45.0% | |
TATGTTCCACCAGCTCAACA+AGG | + | chr1.2:10980014-10980033 | MS.gene059103:CDS | 45.0% | |
TGCAAAGATTCTGCTCCAGA+AGG | - | chr1.2:10980400-10980419 | None:intergenic | 45.0% | |
TTCAGGCTAAAGACGGCTTT+GGG | - | chr1.2:10980146-10980165 | None:intergenic | 45.0% | |
TTTCAGGCTAAAGACGGCTT+TGG | - | chr1.2:10980147-10980166 | None:intergenic | 45.0% | |
TTTCGCTCCACGTGATCAAT+GGG | - | chr1.2:10980482-10980501 | None:intergenic | 45.0% | |
TTTGACTCTCCTTAGTGGCT+TGG | + | chr1.2:10979851-10979870 | MS.gene059103:CDS | 45.0% | |
! | CAAGCTTTGACTCTCCTTAG+TGG | + | chr1.2:10979846-10979865 | MS.gene059103:CDS | 45.0% |
! | GGTTAGTCAAGCTGATGATG+TGG | + | chr1.2:10980190-10980209 | MS.gene059103:CDS | 45.0% |
!! | AAGGCTTGCTACTCTTCTGA+TGG | + | chr1.2:10979806-10979825 | MS.gene059103:CDS | 45.0% |
!! | CTCCAGAAGGGTATCATACA+GGG | - | chr1.2:10980387-10980406 | None:intergenic | 45.0% |
ACGAGACTTCAAGGCACAGT+TGG | + | chr1.2:10980328-10980347 | MS.gene059103:CDS | 50.0% | |
AGACTTCAAGGCACAGTTGG+GGG | + | chr1.2:10980331-10980350 | MS.gene059103:CDS | 50.0% | |
AGCTGTTCTTGCAGCTGTGA+GGG | - | chr1.2:10979982-10980001 | None:intergenic | 50.0% | |
CAAGAAGTTCGCTGGGACAT+TGG | + | chr1.2:10980523-10980542 | MS.gene059103:CDS | 50.0% | |
CCCTATTCTCTTGCCTGAGA+AGG | - | chr1.2:10979581-10979600 | None:intergenic | 50.0% | |
CCTCTTTGACCAAGCCACTA+AGG | - | chr1.2:10979863-10979882 | None:intergenic | 50.0% | |
CGAGACTTCAAGGCACAGTT+GGG | + | chr1.2:10980329-10980348 | MS.gene059103:CDS | 50.0% | |
CTCAATTCGCTGCCTCAGAA+AGG | - | chr1.2:10979784-10979803 | None:intergenic | 50.0% | |
CTTTCGCTCCACGTGATCAA+TGG | - | chr1.2:10980483-10980502 | None:intergenic | 50.0% | |
GAGACTTCAAGGCACAGTTG+GGG | + | chr1.2:10980330-10980349 | MS.gene059103:CDS | 50.0% | |
GCAATAGACTCTGTTGTGGC+AGG | - | chr1.2:10979435-10979454 | None:intergenic | 50.0% | |
TAGACTCTGTTGTGGCAGGA+AGG | - | chr1.2:10979431-10979450 | None:intergenic | 50.0% | |
TCTATGGCACCTTGTTGAGC+TGG | - | chr1.2:10980026-10980045 | None:intergenic | 50.0% | |
TTCGCTGGGACATTGGATCA+AGG | + | chr1.2:10980530-10980549 | MS.gene059103:CDS | 50.0% | |
! | AGAGCATCAGGGGATGAAGA+AGG | - | chr1.2:10979522-10979541 | None:intergenic | 50.0% |
! | AGTCAAGCTGATGATGTGGC+TGG | + | chr1.2:10980194-10980213 | MS.gene059103:CDS | 50.0% |
! | CTTTCATGCGCAGAGCATCA+GGG | - | chr1.2:10979533-10979552 | None:intergenic | 50.0% |
! | GGTGCCATAGATTTGCAGAG+TGG | + | chr1.2:10980035-10980054 | MS.gene059103:CDS | 50.0% |
! | GTGAGGGCAGCTTTTGCTTT+GGG | - | chr1.2:10979966-10979985 | None:intergenic | 50.0% |
! | TCTTTCATGCGCAGAGCATC+AGG | - | chr1.2:10979534-10979553 | None:intergenic | 50.0% |
! | TGTGAGGGCAGCTTTTGCTT+TGG | - | chr1.2:10979967-10979986 | None:intergenic | 50.0% |
! | TTTCATGCGCAGAGCATCAG+GGG | - | chr1.2:10979532-10979551 | None:intergenic | 50.0% |
!! | CCTTAGTGGCTTGGTCAAAG+AGG | + | chr1.2:10979860-10979879 | MS.gene059103:CDS | 50.0% |
!! | CTTTCTGAGGCAGCGAATTG+AGG | + | chr1.2:10979782-10979801 | MS.gene059103:CDS | 50.0% |
!! | GCTCCAGAAGGGTATCATAC+AGG | - | chr1.2:10980388-10980407 | None:intergenic | 50.0% |
!! | GTCTATTGCTCAGGCATTGG+AGG | + | chr1.2:10979446-10979465 | MS.gene059103:CDS | 50.0% |
ATGGCACCTTGTTGAGCTGG+TGG | - | chr1.2:10980023-10980042 | None:intergenic | 55.0% | |
CAAACCTCACCGACCTTCTC+AGG | + | chr1.2:10979565-10979584 | MS.gene059103:CDS | 55.0% | |
CAGCTGTTCTTGCAGCTGTG+AGG | - | chr1.2:10979983-10980002 | None:intergenic | 55.0% | |
CGAGCTTCCCATTGATCACG+TGG | + | chr1.2:10980472-10980491 | MS.gene059103:CDS | 55.0% | |
GCAGCCTTCTCACTCAGTTG+AGG | + | chr1.2:10979613-10979632 | MS.gene059103:CDS | 55.0% | |
GGGACATTGGATCAAGGTGC+TGG | + | chr1.2:10980536-10980555 | MS.gene059103:CDS | 55.0% | |
TGAGGCAGCGAATTGAGGCA+AGG | + | chr1.2:10979787-10979806 | MS.gene059103:CDS | 55.0% | |
TGCTCTGCGCATGAAAGAGC+AGG | + | chr1.2:10979536-10979555 | MS.gene059103:CDS | 55.0% | |
CTTGCCTGAGAAGGTCGGTG+AGG | - | chr1.2:10979572-10979591 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 10979417 | 10980682 | 10979417 | ID=MS.gene059103 |
chr1.2 | mRNA | 10979417 | 10980682 | 10979417 | ID=MS.gene059103.t1;Parent=MS.gene059103 |
chr1.2 | exon | 10979417 | 10980682 | 10979417 | ID=MS.gene059103.t1.exon1;Parent=MS.gene059103.t1 |
chr1.2 | CDS | 10979417 | 10980682 | 10979417 | ID=cds.MS.gene059103.t1;Parent=MS.gene059103.t1 |
Gene Sequence |
Protein sequence |