Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059480.t1 | XP_003588599.1 | 99.8 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 6.90E-225 | 789.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059480.t1 | Q9LP45 | 86.3 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 2.9e-195 | 682.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059480.t1 | G7I549 | 99.8 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 5.0e-225 | 789.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene059480 | -0.802952 | 4.40E-49 | -1.69E-46 |
MS.gene050170 | MS.gene059480 | -0.822701 | 2.06E-53 | -1.69E-46 |
MS.gene050504 | MS.gene059480 | -0.813357 | 2.67E-51 | -1.69E-46 |
MS.gene050577 | MS.gene059480 | -0.826036 | 3.38E-54 | -1.69E-46 |
MS.gene050699 | MS.gene059480 | -0.818912 | 1.53E-52 | -1.69E-46 |
MS.gene052015 | MS.gene059480 | 0.881732 | 1.88E-70 | -1.69E-46 |
MS.gene052503 | MS.gene059480 | -0.804617 | 1.98E-49 | -1.69E-46 |
MS.gene052823 | MS.gene059480 | -0.80922 | 2.11E-50 | -1.69E-46 |
MS.gene052825 | MS.gene059480 | -0.817579 | 3.06E-52 | -1.69E-46 |
MS.gene053097 | MS.gene059480 | 0.804991 | 1.66E-49 | -1.69E-46 |
MS.gene053203 | MS.gene059480 | -0.833555 | 4.99E-56 | -1.69E-46 |
MS.gene05470 | MS.gene059480 | -0.838379 | 2.98E-57 | -1.69E-46 |
MS.gene054851 | MS.gene059480 | 0.819367 | 1.21E-52 | -1.69E-46 |
MS.gene055577 | MS.gene059480 | -0.818752 | 1.66E-52 | -1.69E-46 |
MS.gene055719 | MS.gene059480 | 0.829526 | 4.90E-55 | -1.69E-46 |
MS.gene057658 | MS.gene059480 | -0.805307 | 1.42E-49 | -1.69E-46 |
MS.gene05837 | MS.gene059480 | -0.812182 | 4.82E-51 | -1.69E-46 |
MS.gene058544 | MS.gene059480 | -0.825847 | 3.75E-54 | -1.69E-46 |
MS.gene058838 | MS.gene059480 | -0.806308 | 8.76E-50 | -1.69E-46 |
MS.gene059023 | MS.gene059480 | -0.824336 | 8.53E-54 | -1.69E-46 |
MS.gene059103 | MS.gene059480 | 0.994307 | 3.39E-206 | -1.69E-46 |
MS.gene059480 | MS.gene059756 | -0.806394 | 8.40E-50 | -1.69E-46 |
MS.gene059480 | MS.gene06077 | -0.834952 | 2.23E-56 | -1.69E-46 |
MS.gene059480 | MS.gene061360 | -0.855314 | 6.86E-62 | -1.69E-46 |
MS.gene059480 | MS.gene062332 | -0.801531 | 8.62E-49 | -1.69E-46 |
MS.gene059480 | MS.gene064396 | -0.821462 | 3.99E-53 | -1.69E-46 |
MS.gene059480 | MS.gene064707 | -0.826672 | 2.39E-54 | -1.69E-46 |
MS.gene059480 | MS.gene065675 | -0.803185 | 3.93E-49 | -1.69E-46 |
MS.gene059480 | MS.gene066003 | -0.802032 | 6.80E-49 | -1.69E-46 |
MS.gene059480 | MS.gene066309 | 0.827203 | 1.78E-54 | -1.69E-46 |
MS.gene059480 | MS.gene066359 | 0.815637 | 8.35E-52 | -1.69E-46 |
MS.gene059480 | MS.gene067479 | -0.81202 | 5.23E-51 | -1.69E-46 |
MS.gene059480 | MS.gene067806 | -0.833698 | 4.59E-56 | -1.69E-46 |
MS.gene059480 | MS.gene068074 | 0.825179 | 5.40E-54 | -1.69E-46 |
MS.gene059480 | MS.gene068820 | -0.838538 | 2.71E-57 | -1.69E-46 |
MS.gene059480 | MS.gene069593 | -0.841981 | 3.42E-58 | -1.69E-46 |
MS.gene059480 | MS.gene069855 | -0.864756 | 9.67E-65 | -1.69E-46 |
MS.gene059480 | MS.gene072795 | 0.830392 | 3.01E-55 | -1.69E-46 |
MS.gene059480 | MS.gene072928 | 0.801962 | 7.03E-49 | -1.69E-46 |
MS.gene059480 | MS.gene07329 | -0.828551 | 8.44E-55 | -1.69E-46 |
MS.gene059480 | MS.gene074109 | -0.813894 | 2.03E-51 | -1.69E-46 |
MS.gene059480 | MS.gene074291 | -0.823967 | 1.04E-53 | -1.69E-46 |
MS.gene059480 | MS.gene08322 | 0.865802 | 4.53E-65 | -1.69E-46 |
MS.gene059480 | MS.gene08663 | 0.827478 | 1.53E-54 | -1.69E-46 |
MS.gene059480 | MS.gene08918 | 0.871653 | 5.80E-67 | -1.69E-46 |
MS.gene059480 | MS.gene08919 | 0.872859 | 2.30E-67 | -1.69E-46 |
MS.gene059480 | MS.gene09072 | 0.813831 | 2.10E-51 | -1.69E-46 |
MS.gene059480 | MS.gene09795 | -0.819359 | 1.21E-52 | -1.69E-46 |
MS.gene059480 | MS.gene09797 | -0.818736 | 1.68E-52 | -1.69E-46 |
MS.gene059480 | MS.gene09798 | -0.830026 | 3.70E-55 | -1.69E-46 |
MS.gene059480 | MS.gene20358 | -0.817558 | 3.10E-52 | -1.69E-46 |
MS.gene059480 | MS.gene20932 | -0.852421 | 4.67E-61 | -1.69E-46 |
MS.gene059480 | MS.gene22219 | -0.80177 | 7.70E-49 | -1.69E-46 |
MS.gene059480 | MS.gene22474 | -0.833327 | 5.68E-56 | -1.69E-46 |
MS.gene059480 | MS.gene22475 | -0.804545 | 2.05E-49 | -1.69E-46 |
MS.gene059480 | MS.gene22588 | -0.809358 | 1.97E-50 | -1.69E-46 |
MS.gene059480 | MS.gene22869 | -0.828957 | 6.73E-55 | -1.69E-46 |
MS.gene059480 | MS.gene24024 | -0.818744 | 1.67E-52 | -1.69E-46 |
MS.gene059480 | MS.gene25979 | -0.800624 | 1.32E-48 | -1.69E-46 |
MS.gene059480 | MS.gene27876 | -0.818064 | 2.38E-52 | -1.69E-46 |
MS.gene059480 | MS.gene27961 | 0.805218 | 1.48E-49 | -1.69E-46 |
MS.gene059480 | MS.gene27981 | -0.836214 | 1.07E-56 | -1.69E-46 |
MS.gene059480 | MS.gene28292 | 0.833363 | 5.57E-56 | -1.69E-46 |
MS.gene059480 | MS.gene31589 | 0.959702 | 9.82E-118 | -1.69E-46 |
MS.gene059480 | MS.gene31736 | 0.836652 | 8.25E-57 | -1.69E-46 |
MS.gene059480 | MS.gene32242 | 0.809822 | 1.56E-50 | -1.69E-46 |
MS.gene059480 | MS.gene33980 | 0.848125 | 7.48E-60 | -1.69E-46 |
MS.gene059480 | MS.gene34038 | -0.833254 | 5.93E-56 | -1.69E-46 |
MS.gene059480 | MS.gene34472 | -0.813452 | 2.54E-51 | -1.69E-46 |
MS.gene059480 | MS.gene34934 | 0.853178 | 2.84E-61 | -1.69E-46 |
MS.gene059480 | MS.gene35221 | 0.819651 | 1.04E-52 | -1.69E-46 |
MS.gene059480 | MS.gene35712 | -0.83099 | 2.15E-55 | -1.69E-46 |
MS.gene059480 | MS.gene35812 | -0.830606 | 2.67E-55 | -1.69E-46 |
MS.gene059480 | MS.gene36337 | -0.865597 | 5.26E-65 | -1.69E-46 |
MS.gene059480 | MS.gene36419 | 0.808433 | 3.10E-50 | -1.69E-46 |
MS.gene059480 | MS.gene38250 | -0.816647 | 4.96E-52 | -1.69E-46 |
MS.gene059480 | MS.gene38252 | -0.811157 | 8.06E-51 | -1.69E-46 |
MS.gene059480 | MS.gene40108 | -0.809202 | 2.13E-50 | -1.69E-46 |
MS.gene059480 | MS.gene40173 | 0.800759 | 1.24E-48 | -1.69E-46 |
MS.gene059480 | MS.gene41334 | -0.831961 | 1.24E-55 | -1.69E-46 |
MS.gene059480 | MS.gene41884 | 0.838341 | 3.05E-57 | -1.69E-46 |
MS.gene059480 | MS.gene41999 | 0.806184 | 9.30E-50 | -1.69E-46 |
MS.gene059480 | MS.gene42301 | -0.849787 | 2.58E-60 | -1.69E-46 |
MS.gene059480 | MS.gene42884 | -0.824707 | 6.98E-54 | -1.69E-46 |
MS.gene059480 | MS.gene43355 | -0.800115 | 1.68E-48 | -1.69E-46 |
MS.gene059480 | MS.gene44099 | -0.842274 | 2.86E-58 | -1.69E-46 |
MS.gene059480 | MS.gene44351 | 0.820807 | 5.64E-53 | -1.69E-46 |
MS.gene059480 | MS.gene44439 | -0.870708 | 1.19E-66 | -1.69E-46 |
MS.gene059480 | MS.gene44440 | -0.847689 | 9.87E-60 | -1.69E-46 |
MS.gene059480 | MS.gene45607 | -0.870373 | 1.53E-66 | -1.69E-46 |
MS.gene059480 | MS.gene46379 | 0.802035 | 6.79E-49 | -1.69E-46 |
MS.gene059480 | MS.gene48050 | 0.811031 | 8.58E-51 | -1.69E-46 |
MS.gene059480 | MS.gene49065 | -0.85177 | 7.15E-61 | -1.69E-46 |
MS.gene059480 | MS.gene49762 | 0.828181 | 1.04E-54 | -1.69E-46 |
MS.gene059480 | MS.gene49971 | -0.856469 | 3.15E-62 | -1.69E-46 |
MS.gene059480 | MS.gene50526 | -0.809722 | 1.64E-50 | -1.69E-46 |
MS.gene059480 | MS.gene50781 | -0.833397 | 5.46E-56 | -1.69E-46 |
MS.gene059480 | MS.gene51452 | 0.801755 | 7.75E-49 | -1.69E-46 |
MS.gene059480 | MS.gene51887 | -0.837899 | 3.96E-57 | -1.69E-46 |
MS.gene059480 | MS.gene52273 | -0.830409 | 2.99E-55 | -1.69E-46 |
MS.gene059480 | MS.gene52725 | -0.809291 | 2.04E-50 | -1.69E-46 |
MS.gene059480 | MS.gene53390 | -0.800821 | 1.20E-48 | -1.69E-46 |
MS.gene059480 | MS.gene54412 | -0.808036 | 3.77E-50 | -1.69E-46 |
MS.gene059480 | MS.gene55698 | -0.806196 | 9.25E-50 | -1.69E-46 |
MS.gene059480 | MS.gene55803 | -0.81499 | 1.16E-51 | -1.69E-46 |
MS.gene059480 | MS.gene56518 | -0.80006 | 1.72E-48 | -1.69E-46 |
MS.gene059480 | MS.gene57602 | -0.807488 | 4.93E-50 | -1.69E-46 |
MS.gene059480 | MS.gene58466 | -0.841887 | 3.62E-58 | -1.69E-46 |
MS.gene059480 | MS.gene58779 | -0.814866 | 1.24E-51 | -1.69E-46 |
MS.gene059480 | MS.gene59101 | -0.801591 | 8.38E-49 | -1.69E-46 |
MS.gene059480 | MS.gene59475 | -0.827735 | 1.33E-54 | -1.69E-46 |
MS.gene059480 | MS.gene59657 | -0.830413 | 2.98E-55 | -1.69E-46 |
MS.gene059480 | MS.gene60176 | -0.870355 | 1.55E-66 | -1.69E-46 |
MS.gene059480 | MS.gene60177 | -0.86785 | 1.01E-65 | -1.69E-46 |
MS.gene059480 | MS.gene60360 | -0.83144 | 1.67E-55 | -1.69E-46 |
MS.gene059480 | MS.gene60712 | -0.816411 | 5.61E-52 | -1.69E-46 |
MS.gene059480 | MS.gene61144 | -0.871088 | 8.92E-67 | -1.69E-46 |
MS.gene059480 | MS.gene61145 | -0.868141 | 8.14E-66 | -1.69E-46 |
MS.gene059480 | MS.gene61919 | -0.809098 | 2.24E-50 | -1.69E-46 |
MS.gene059480 | MS.gene62850 | -0.815954 | 7.09E-52 | -1.69E-46 |
MS.gene059480 | MS.gene65400 | -0.838195 | 3.32E-57 | -1.69E-46 |
MS.gene059480 | MS.gene65986 | 0.815197 | 1.05E-51 | -1.69E-46 |
MS.gene059480 | MS.gene69450 | -0.826444 | 2.70E-54 | -1.69E-46 |
MS.gene059480 | MS.gene70123 | 0.83526 | 1.86E-56 | -1.69E-46 |
MS.gene059480 | MS.gene70143 | -0.821361 | 4.21E-53 | -1.69E-46 |
MS.gene059480 | MS.gene70212 | -0.81655 | 5.22E-52 | -1.69E-46 |
MS.gene059480 | MS.gene70226 | 0.805959 | 1.04E-49 | -1.69E-46 |
MS.gene059480 | MS.gene70306 | -0.809662 | 1.69E-50 | -1.69E-46 |
MS.gene059480 | MS.gene70326 | -0.812905 | 3.35E-51 | -1.69E-46 |
MS.gene059480 | MS.gene71059 | -0.8027 | 4.95E-49 | -1.69E-46 |
MS.gene059480 | MS.gene72106 | -0.813022 | 3.16E-51 | -1.69E-46 |
MS.gene059480 | MS.gene72416 | -0.813876 | 2.05E-51 | -1.69E-46 |
MS.gene059480 | MS.gene72720 | -0.824434 | 8.09E-54 | -1.69E-46 |
MS.gene059480 | MS.gene72940 | 0.801195 | 1.01E-48 | -1.69E-46 |
MS.gene059480 | MS.gene73544 | -0.812272 | 4.61E-51 | -1.69E-46 |
MS.gene059480 | MS.gene73545 | -0.818199 | 2.22E-52 | -1.69E-46 |
MS.gene059480 | MS.gene73690 | -0.825111 | 5.60E-54 | -1.69E-46 |
MS.gene059480 | MS.gene74575 | -0.802608 | 5.17E-49 | -1.69E-46 |
MS.gene059480 | MS.gene75231 | -0.816625 | 5.02E-52 | -1.69E-46 |
MS.gene059480 | MS.gene75880 | 0.814168 | 1.77E-51 | -1.69E-46 |
MS.gene059480 | MS.gene76418 | -0.80384 | 2.88E-49 | -1.69E-46 |
MS.gene059480 | MS.gene76521 | -0.88363 | 3.81E-71 | -1.69E-46 |
MS.gene059480 | MS.gene77595 | 0.838112 | 3.49E-57 | -1.69E-46 |
MS.gene059480 | MS.gene78942 | -0.842563 | 2.40E-58 | -1.69E-46 |
MS.gene059480 | MS.gene79129 | 0.800232 | 1.59E-48 | -1.69E-46 |
MS.gene059480 | MS.gene80239 | -0.807632 | 4.60E-50 | -1.69E-46 |
MS.gene059480 | MS.gene80717 | 0.824553 | 7.59E-54 | -1.69E-46 |
MS.gene059480 | MS.gene81275 | -0.805861 | 1.09E-49 | -1.69E-46 |
MS.gene059480 | MS.gene81747 | -0.824553 | 7.59E-54 | -1.69E-46 |
MS.gene059480 | MS.gene83606 | -0.810972 | 8.84E-51 | -1.69E-46 |
MS.gene059480 | MS.gene83941 | -0.800989 | 1.11E-48 | -1.69E-46 |
MS.gene059480 | MS.gene84198 | 0.822447 | 2.36E-53 | -1.69E-46 |
MS.gene059480 | MS.gene85136 | -0.863054 | 3.27E-64 | -1.69E-46 |
MS.gene059480 | MS.gene87473 | -0.81137 | 7.24E-51 | -1.69E-46 |
MS.gene059480 | MS.gene88896 | -0.838987 | 2.07E-57 | -1.69E-46 |
MS.gene059480 | MS.gene88958 | -0.827371 | 1.62E-54 | -1.69E-46 |
MS.gene059480 | MS.gene90277 | -0.814743 | 1.32E-51 | -1.69E-46 |
MS.gene059480 | MS.gene90364 | -0.813598 | 2.36E-51 | -1.69E-46 |
MS.gene059480 | MS.gene91401 | -0.804741 | 1.87E-49 | -1.69E-46 |
MS.gene059480 | MS.gene91533 | -0.815175 | 1.06E-51 | -1.69E-46 |
MS.gene059480 | MS.gene92636 | -0.820569 | 6.40E-53 | -1.69E-46 |
MS.gene059480 | MS.gene94807 | -0.822658 | 2.11E-53 | -1.69E-46 |
MS.gene059480 | MS.gene95038 | -0.801909 | 7.21E-49 | -1.69E-46 |
MS.gene059480 | MS.gene95041 | -0.80571 | 1.17E-49 | -1.69E-46 |
MS.gene059480 | MS.gene96198 | -0.801454 | 8.94E-49 | -1.69E-46 |
MS.gene059480 | MS.gene96524 | -0.800065 | 1.72E-48 | -1.69E-46 |
MS.gene059480 | MS.gene96549 | -0.822723 | 2.03E-53 | -1.69E-46 |
MS.gene059480 | MS.gene97422 | -0.843306 | 1.52E-58 | -1.69E-46 |
MS.gene059480 | MS.gene97437 | 0.862743 | 4.08E-64 | -1.69E-46 |
MS.gene059480 | MS.gene97726 | -0.831472 | 1.64E-55 | -1.69E-46 |
MS.gene059480 | MS.gene97862 | -0.80087 | 1.18E-48 | -1.69E-46 |
MS.gene059480 | MS.gene98678 | -0.824257 | 8.90E-54 | -1.69E-46 |
MS.gene059480 | MS.gene98722 | 0.879294 | 1.40E-69 | -1.69E-46 |
MS.gene059480 | MS.gene98750 | -0.806297 | 8.81E-50 | -1.69E-46 |
MS.gene059480 | MS.gene99664 | -0.817692 | 2.89E-52 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059480.t1 | MTR_1g009010 | 99.762 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 0.0 | 851 |
MS.gene059480.t1 | MTR_3g109300 | 93.079 | 419 | 29 | 0 | 2 | 420 | 252 | 670 | 0.0 | 770 |
MS.gene059480.t1 | MTR_7g087530 | 24.251 | 334 | 234 | 6 | 55 | 378 | 76 | 400 | 2.25e-21 | 96.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059480.t1 | AT1G29150 | 86.265 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 0.0 | 704 |
MS.gene059480.t1 | AT1G29150 | 86.265 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 0.0 | 704 |
MS.gene059480.t1 | AT2G26990 | 21.690 | 355 | 259 | 7 | 34 | 378 | 55 | 400 | 5.21e-16 | 80.1 |
Find 93 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATAATTTCAGGGATCTTT+TGG | 0.192366 | 1.3:-11091473 | None:intergenic |
AAGCAGTTTCAAATAATTTC+AGG | 0.248613 | 1.3:-11091483 | None:intergenic |
TACACAGCAACATGTATTTC+AGG | 0.261616 | 1.3:-11091339 | None:intergenic |
GCAATATCTTGGACCTGATT+TGG | 0.308447 | 1.3:+11091420 | MS.gene059480:CDS |
ATATTGCAGGCCTGCTTTAG+AGG | 0.337336 | 1.3:-11091404 | None:intergenic |
TCTTTCATGCGCAGAGCATC+AGG | 0.340066 | 1.3:-11090710 | None:intergenic |
TTCAGGCTAAAGACGGCTTT+GGG | 0.358755 | 1.3:-11091322 | None:intergenic |
CAAGAAGTTCGCTGGGACAT+TGG | 0.366159 | 1.3:+11091702 | MS.gene059480:CDS |
GCTTTCATTGCATCCAAATC+AGG | 0.369042 | 1.3:-11091433 | None:intergenic |
TAGAAACCATTTCTAATGTT+GGG | 0.370156 | 1.3:+11091791 | MS.gene059480:CDS |
GAAATGGTTTCTAAAGTTGC+AGG | 0.374373 | 1.3:-11091781 | None:intergenic |
TTTCAGGCTAAAGACGGCTT+TGG | 0.375816 | 1.3:-11091323 | None:intergenic |
CAAGCTTTGACTCTCCTTAG+TGG | 0.388037 | 1.3:+11091025 | MS.gene059480:CDS |
GACTTTCCCAACATTAGAAA+TGG | 0.391872 | 1.3:-11091797 | None:intergenic |
CCTTCTCAGGCAAGAGAATA+GGG | 0.395870 | 1.3:+11090757 | MS.gene059480:CDS |
AATCCCACTCTGCAAATCTA+TGG | 0.395909 | 1.3:-11091218 | None:intergenic |
CTTTCGCTCCACGTGATCAA+TGG | 0.400421 | 1.3:-11091659 | None:intergenic |
CGAGACTTCAAGGCACAGTT+GGG | 0.400670 | 1.3:+11091508 | MS.gene059480:CDS |
TTTGACTCTCCTTAGTGGCT+TGG | 0.409710 | 1.3:+11091030 | MS.gene059480:CDS |
AACTGCTTTACGAGACTTCA+AGG | 0.415681 | 1.3:+11091498 | MS.gene059480:CDS |
TACTCTTCTGATGGAAAGTA+AGG | 0.419643 | 1.3:+11090994 | MS.gene059480:CDS |
CAAACCTCACCGACCTTCTC+AGG | 0.419854 | 1.3:+11090744 | MS.gene059480:CDS |
ATCCCTGTATGATACCCTTC+TGG | 0.426885 | 1.3:+11091561 | MS.gene059480:CDS |
AAAGCAGGCCTGCAATATCT+TGG | 0.428220 | 1.3:+11091409 | MS.gene059480:CDS |
TCCATTCTTTATCGTGTACT+TGG | 0.428345 | 1.3:+11090671 | MS.gene059480:CDS |
GCTTGGTCAAAGAGGTTAGA+AGG | 0.428699 | 1.3:+11091047 | MS.gene059480:CDS |
TTAGAAACCATTTCTAATGT+TGG | 0.430658 | 1.3:+11091790 | MS.gene059480:CDS |
ACCTTCTCAGGCAAGAGAAT+AGG | 0.449371 | 1.3:+11090756 | MS.gene059480:CDS |
GTCTATTGCTCAGGCATTGG+AGG | 0.453941 | 1.3:+11090625 | MS.gene059480:CDS |
GAGATCTCATGTCATTATCT+TGG | 0.457490 | 1.3:-11091845 | None:intergenic |
AGCAGTTTCAAATAATTTCA+GGG | 0.458625 | 1.3:-11091482 | None:intergenic |
AATTTCACTATGCAAAGAAA+TGG | 0.464269 | 1.3:+11090910 | MS.gene059480:CDS |
AGCTGTTCTTGCAGCTGTGA+GGG | 0.469625 | 1.3:-11091158 | None:intergenic |
GCAATTTCAACCCTTGAGAA+TGG | 0.470337 | 1.3:-11091610 | None:intergenic |
CCTCTTTGACCAAGCCACTA+AGG | 0.474592 | 1.3:-11091039 | None:intergenic |
GCTCCAGAAGGGTATCATAC+AGG | 0.475823 | 1.3:-11091564 | None:intergenic |
TTTCGCTCCACGTGATCAAT+GGG | 0.485219 | 1.3:-11091658 | None:intergenic |
AATCAGGTCCAAGATATTGC+AGG | 0.487957 | 1.3:-11091417 | None:intergenic |
GATTCTGTTGCTAAAATACC+AGG | 0.490110 | 1.3:+11090872 | MS.gene059480:CDS |
GGGATGATCCAATCGTTCAT+AGG | 0.490676 | 1.3:+11091530 | MS.gene059480:CDS |
TGCTCTGCGCATGAAAGAGC+AGG | 0.492288 | 1.3:+11090715 | MS.gene059480:CDS |
CCCTATTCTCTTGCCTGAGA+AGG | 0.492528 | 1.3:-11090757 | None:intergenic |
CACAACAGAGTCTATTGCTC+AGG | 0.495213 | 1.3:+11090616 | MS.gene059480:CDS |
AGAGTCTATTGCTCAGGCAT+TGG | 0.499267 | 1.3:+11090622 | MS.gene059480:CDS |
ACCAAGTACACGATAAAGAA+TGG | 0.500491 | 1.3:-11090672 | None:intergenic |
CAGCTGTTCTTGCAGCTGTG+AGG | 0.517302 | 1.3:-11091159 | None:intergenic |
CTTTCTGAGGCAGCGAATTG+AGG | 0.519044 | 1.3:+11090961 | MS.gene059480:CDS |
GTCAAGTGCCTATGAACGAT+TGG | 0.521697 | 1.3:-11091538 | None:intergenic |
GGGACATTGGATCAAGGTGC+TGG | 0.531380 | 1.3:+11091715 | MS.gene059480:CDS |
TCTATGGCACCTTGTTGAGC+TGG | 0.543072 | 1.3:-11091202 | None:intergenic |
GCAATAGACTCTGTTGTGGC+AGG | 0.543654 | 1.3:-11090611 | None:intergenic |
CTCCAGAAGGGTATCATACA+GGG | 0.544409 | 1.3:-11091563 | None:intergenic |
CTCAATTCGCTGCCTCAGAA+AGG | 0.545619 | 1.3:-11090960 | None:intergenic |
TGCAAAGATTCTGCTCCAGA+AGG | 0.549152 | 1.3:-11091576 | None:intergenic |
CATGTTGCTGTGTAAGATCA+TGG | 0.549562 | 1.3:+11091348 | MS.gene059480:CDS |
CGAGCTTCCCATTGATCACG+TGG | 0.562921 | 1.3:+11091651 | MS.gene059480:CDS |
ACGAGACTTCAAGGCACAGT+TGG | 0.565359 | 1.3:+11091507 | MS.gene059480:CDS |
CCTTAGTGGCTTGGTCAAAG+AGG | 0.571283 | 1.3:+11091039 | MS.gene059480:CDS |
AGAGCATCAGGGGATGAAGA+AGG | 0.572998 | 1.3:-11090698 | None:intergenic |
GATTGATTGAACCATTCTCA+AGG | 0.573343 | 1.3:+11091599 | MS.gene059480:CDS |
GATTCTTCATGCTGAAGAGA+AGG | 0.574447 | 1.3:+11091237 | MS.gene059480:CDS |
GTGCCATAGATTTGCAGAGT+GGG | 0.575197 | 1.3:+11091215 | MS.gene059480:CDS |
TTCGCTGGGACATTGGATCA+AGG | 0.575199 | 1.3:+11091709 | MS.gene059480:CDS |
GCAAGTCTATGTCTACAAGT+AGG | 0.577240 | 1.3:-11091084 | None:intergenic |
CTTTCATGCGCAGAGCATCA+GGG | 0.581958 | 1.3:-11090709 | None:intergenic |
GGAATCATATCCTCTAAAGC+AGG | 0.583289 | 1.3:+11091394 | MS.gene059480:CDS |
TAGACTCTGTTGTGGCAGGA+AGG | 0.584069 | 1.3:-11090607 | None:intergenic |
CATGTATTTCAGGCTAAAGA+CGG | 0.589827 | 1.3:-11091329 | None:intergenic |
AAGGCTTGCTACTCTTCTGA+TGG | 0.595479 | 1.3:+11090985 | MS.gene059480:CDS |
TGAGGCAGCGAATTGAGGCA+AGG | 0.595879 | 1.3:+11090966 | MS.gene059480:CDS |
AGTCAAGCTGATGATGTGGC+TGG | 0.596537 | 1.3:+11091373 | MS.gene059480:CDS |
ATGGCACCTTGTTGAGCTGG+TGG | 0.598642 | 1.3:-11091199 | None:intergenic |
TTCTAATGTTGGGAAAGTCG+TGG | 0.601063 | 1.3:+11091801 | MS.gene059480:CDS |
ATTTGTAACTCAGATGTCCC+TGG | 0.601526 | 1.3:-11090890 | None:intergenic |
TTTCATGCGCAGAGCATCAG+GGG | 0.602569 | 1.3:-11090708 | None:intergenic |
CTTGCCTGAGAAGGTCGGTG+AGG | 0.609314 | 1.3:-11090748 | None:intergenic |
ATTGATTGAACCATTCTCAA+GGG | 0.609884 | 1.3:+11091600 | MS.gene059480:CDS |
GCAGCCTTCTCACTCAGTTG+AGG | 0.611712 | 1.3:+11090792 | MS.gene059480:CDS |
GCAAAGATTCTGCTCCAGAA+GGG | 0.618885 | 1.3:-11091575 | None:intergenic |
ATGACCTCAACTGAGTGAGA+AGG | 0.626789 | 1.3:-11090796 | None:intergenic |
ATGAAAAGCGTACCTTTCTG+AGG | 0.631690 | 1.3:+11090948 | MS.gene059480:CDS |
TATGCAAAGAAATGGTGCAA+TGG | 0.632106 | 1.3:+11090918 | MS.gene059480:CDS |
GGCAGGAAGGAAAGAAGACA+TGG | 0.635532 | 1.3:-11090594 | None:intergenic |
ATTCTCTTGCCTGAGAAGGT+CGG | 0.636643 | 1.3:-11090753 | None:intergenic |
TAGGATCGTCAAAGATGACA+AGG | 0.650133 | 1.3:-11091741 | None:intergenic |
GAGACTTCAAGGCACAGTTG+GGG | 0.656008 | 1.3:+11091509 | MS.gene059480:CDS |
TATGTTCCACCAGCTCAACA+AGG | 0.660678 | 1.3:+11091193 | MS.gene059480:CDS |
GGTTAGTCAAGCTGATGATG+TGG | 0.670365 | 1.3:+11091369 | MS.gene059480:CDS |
AAAACTGCAAAGATTGTGAG+GGG | 0.672793 | 1.3:+11090842 | MS.gene059480:CDS |
ATTCTGTTGCTAAAATACCA+GGG | 0.677431 | 1.3:+11090873 | MS.gene059480:CDS |
AGACTTCAAGGCACAGTTGG+GGG | 0.696743 | 1.3:+11091510 | MS.gene059480:CDS |
CTGAGCAATAGACTCTGTTG+TGG | 0.698808 | 1.3:-11090615 | None:intergenic |
GGTGCCATAGATTTGCAGAG+TGG | 0.753705 | 1.3:+11091214 | MS.gene059480:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAGCAGTTTCAAATAATTTC+AGG | - | chr1.3:11091486-11091505 | None:intergenic | 25.0% |
! | AATTTCACTATGCAAAGAAA+TGG | + | chr1.3:11090910-11090929 | MS.gene059480:CDS | 25.0% |
! | AGCAGTTTCAAATAATTTCA+GGG | - | chr1.3:11091485-11091504 | None:intergenic | 25.0% |
! | TAGAAACCATTTCTAATGTT+GGG | + | chr1.3:11091791-11091810 | MS.gene059480:CDS | 25.0% |
! | TTAGAAACCATTTCTAATGT+TGG | + | chr1.3:11091790-11091809 | MS.gene059480:CDS | 25.0% |
!! | AAATAATTTCAGGGATCTTT+TGG | - | chr1.3:11091476-11091495 | None:intergenic | 25.0% |
AAAAACTGCAAAGATTGTGA+GGG | + | chr1.3:11090841-11090860 | MS.gene059480:CDS | 30.0% | |
ATTCTGTTGCTAAAATACCA+GGG | + | chr1.3:11090873-11090892 | MS.gene059480:CDS | 30.0% | |
ATTGATTGAACCATTCTCAA+GGG | + | chr1.3:11091600-11091619 | MS.gene059480:CDS | 30.0% | |
! | GGATATATAGCATCAGTTTT+AGG | - | chr1.3:11091763-11091782 | None:intergenic | 30.0% |
!!! | TGCTTTGGGAAGATTTTTTA+AGG | - | chr1.3:11091131-11091150 | None:intergenic | 30.0% |
AAAACTGCAAAGATTGTGAG+GGG | + | chr1.3:11090842-11090861 | MS.gene059480:CDS | 35.0% | |
ACCAAGTACACGATAAAGAA+TGG | - | chr1.3:11090675-11090694 | None:intergenic | 35.0% | |
CAAAAACTGCAAAGATTGTG+AGG | + | chr1.3:11090840-11090859 | MS.gene059480:CDS | 35.0% | |
CATGTATTTCAGGCTAAAGA+CGG | - | chr1.3:11091332-11091351 | None:intergenic | 35.0% | |
GACTTTCCCAACATTAGAAA+TGG | - | chr1.3:11091800-11091819 | None:intergenic | 35.0% | |
GATTCTGTTGCTAAAATACC+AGG | + | chr1.3:11090872-11090891 | MS.gene059480:CDS | 35.0% | |
GATTGATTGAACCATTCTCA+AGG | + | chr1.3:11091599-11091618 | MS.gene059480:CDS | 35.0% | |
TACACAGCAACATGTATTTC+AGG | - | chr1.3:11091342-11091361 | None:intergenic | 35.0% | |
TACTCTTCTGATGGAAAGTA+AGG | + | chr1.3:11090994-11091013 | MS.gene059480:CDS | 35.0% | |
TATGCAAAGAAATGGTGCAA+TGG | + | chr1.3:11090918-11090937 | MS.gene059480:CDS | 35.0% | |
TCCATTCTTTATCGTGTACT+TGG | + | chr1.3:11090671-11090690 | MS.gene059480:CDS | 35.0% | |
! | AATCTTTGCAGTTTTTGCCT+TGG | - | chr1.3:11090837-11090856 | None:intergenic | 35.0% |
! | ATCTTTGCAGTTTTTGCCTT+GGG | - | chr1.3:11090836-11090855 | None:intergenic | 35.0% |
! | ATTCTTTTCCTTGATTCCCA+AGG | + | chr1.3:11090817-11090836 | MS.gene059480:CDS | 35.0% |
! | ATTTTAGACAAGAAGTTCGC+TGG | + | chr1.3:11091694-11091713 | MS.gene059480:CDS | 35.0% |
! | TTTTAGACAAGAAGTTCGCT+GGG | + | chr1.3:11091695-11091714 | MS.gene059480:CDS | 35.0% |
!! | GAAATGGTTTCTAAAGTTGC+AGG | - | chr1.3:11091784-11091803 | None:intergenic | 35.0% |
AACTGCTTTACGAGACTTCA+AGG | + | chr1.3:11091498-11091517 | MS.gene059480:CDS | 40.0% | |
AATCAGGTCCAAGATATTGC+AGG | - | chr1.3:11091420-11091439 | None:intergenic | 40.0% | |
AATCCCACTCTGCAAATCTA+TGG | - | chr1.3:11091221-11091240 | None:intergenic | 40.0% | |
ATTTGTAACTCAGATGTCCC+TGG | - | chr1.3:11090893-11090912 | None:intergenic | 40.0% | |
CATGTTGCTGTGTAAGATCA+TGG | + | chr1.3:11091348-11091367 | MS.gene059480:CDS | 40.0% | |
GATTCTTCATGCTGAAGAGA+AGG | + | chr1.3:11091237-11091256 | MS.gene059480:CDS | 40.0% | |
GCAAGTCTATGTCTACAAGT+AGG | - | chr1.3:11091087-11091106 | None:intergenic | 40.0% | |
GCAATATCTTGGACCTGATT+TGG | + | chr1.3:11091420-11091439 | MS.gene059480:CDS | 40.0% | |
GCAATTTCAACCCTTGAGAA+TGG | - | chr1.3:11091613-11091632 | None:intergenic | 40.0% | |
GCTTTCATTGCATCCAAATC+AGG | - | chr1.3:11091436-11091455 | None:intergenic | 40.0% | |
TAGGATCGTCAAAGATGACA+AGG | - | chr1.3:11091744-11091763 | None:intergenic | 40.0% | |
TTCTAATGTTGGGAAAGTCG+TGG | + | chr1.3:11091801-11091820 | MS.gene059480:CDS | 40.0% | |
! | AGTTTTTGCCTTGGGAATCA+AGG | - | chr1.3:11090828-11090847 | None:intergenic | 40.0% |
! | ATGAAAAGCGTACCTTTCTG+AGG | + | chr1.3:11090948-11090967 | MS.gene059480:CDS | 40.0% |
! | TCGTGGACAGTCTTTTTGTT+AGG | + | chr1.3:11091818-11091837 | MS.gene059480:CDS | 40.0% |
!! | GGAATCATATCCTCTAAAGC+AGG | + | chr1.3:11091394-11091413 | MS.gene059480:CDS | 40.0% |
AAAGCAGGCCTGCAATATCT+TGG | + | chr1.3:11091409-11091428 | MS.gene059480:CDS | 45.0% | |
ACCTTCTCAGGCAAGAGAAT+AGG | + | chr1.3:11090756-11090775 | MS.gene059480:CDS | 45.0% | |
AGAGTCTATTGCTCAGGCAT+TGG | + | chr1.3:11090622-11090641 | MS.gene059480:CDS | 45.0% | |
ATATTGCAGGCCTGCTTTAG+AGG | - | chr1.3:11091407-11091426 | None:intergenic | 45.0% | |
ATCCCTGTATGATACCCTTC+TGG | + | chr1.3:11091561-11091580 | MS.gene059480:CDS | 45.0% | |
ATGACCTCAACTGAGTGAGA+AGG | - | chr1.3:11090799-11090818 | None:intergenic | 45.0% | |
ATTCTCTTGCCTGAGAAGGT+CGG | - | chr1.3:11090756-11090775 | None:intergenic | 45.0% | |
CACAACAGAGTCTATTGCTC+AGG | + | chr1.3:11090616-11090635 | MS.gene059480:CDS | 45.0% | |
CCTTCTCAGGCAAGAGAATA+GGG | + | chr1.3:11090757-11090776 | MS.gene059480:CDS | 45.0% | |
CTGAGCAATAGACTCTGTTG+TGG | - | chr1.3:11090618-11090637 | None:intergenic | 45.0% | |
GCAAAGATTCTGCTCCAGAA+GGG | - | chr1.3:11091578-11091597 | None:intergenic | 45.0% | |
GCTTGGTCAAAGAGGTTAGA+AGG | + | chr1.3:11091047-11091066 | MS.gene059480:CDS | 45.0% | |
GGGATGATCCAATCGTTCAT+AGG | + | chr1.3:11091530-11091549 | MS.gene059480:CDS | 45.0% | |
GTCAAGTGCCTATGAACGAT+TGG | - | chr1.3:11091541-11091560 | None:intergenic | 45.0% | |
GTGCCATAGATTTGCAGAGT+GGG | + | chr1.3:11091215-11091234 | MS.gene059480:CDS | 45.0% | |
TATGTTCCACCAGCTCAACA+AGG | + | chr1.3:11091193-11091212 | MS.gene059480:CDS | 45.0% | |
TGCAAAGATTCTGCTCCAGA+AGG | - | chr1.3:11091579-11091598 | None:intergenic | 45.0% | |
TTCAGGCTAAAGACGGCTTT+GGG | - | chr1.3:11091325-11091344 | None:intergenic | 45.0% | |
TTTCAGGCTAAAGACGGCTT+TGG | - | chr1.3:11091326-11091345 | None:intergenic | 45.0% | |
TTTCGCTCCACGTGATCAAT+GGG | - | chr1.3:11091661-11091680 | None:intergenic | 45.0% | |
TTTGACTCTCCTTAGTGGCT+TGG | + | chr1.3:11091030-11091049 | MS.gene059480:CDS | 45.0% | |
! | CAAGCTTTGACTCTCCTTAG+TGG | + | chr1.3:11091025-11091044 | MS.gene059480:CDS | 45.0% |
! | GGTTAGTCAAGCTGATGATG+TGG | + | chr1.3:11091369-11091388 | MS.gene059480:CDS | 45.0% |
!! | AAGGCTTGCTACTCTTCTGA+TGG | + | chr1.3:11090985-11091004 | MS.gene059480:CDS | 45.0% |
!! | CTCCAGAAGGGTATCATACA+GGG | - | chr1.3:11091566-11091585 | None:intergenic | 45.0% |
ACGAGACTTCAAGGCACAGT+TGG | + | chr1.3:11091507-11091526 | MS.gene059480:CDS | 50.0% | |
AGACTTCAAGGCACAGTTGG+GGG | + | chr1.3:11091510-11091529 | MS.gene059480:CDS | 50.0% | |
AGCTGTTCTTGCAGCTGTGA+GGG | - | chr1.3:11091161-11091180 | None:intergenic | 50.0% | |
CAAGAAGTTCGCTGGGACAT+TGG | + | chr1.3:11091702-11091721 | MS.gene059480:CDS | 50.0% | |
CCCTATTCTCTTGCCTGAGA+AGG | - | chr1.3:11090760-11090779 | None:intergenic | 50.0% | |
CCTCTTTGACCAAGCCACTA+AGG | - | chr1.3:11091042-11091061 | None:intergenic | 50.0% | |
CGAGACTTCAAGGCACAGTT+GGG | + | chr1.3:11091508-11091527 | MS.gene059480:CDS | 50.0% | |
CTCAATTCGCTGCCTCAGAA+AGG | - | chr1.3:11090963-11090982 | None:intergenic | 50.0% | |
CTTTCGCTCCACGTGATCAA+TGG | - | chr1.3:11091662-11091681 | None:intergenic | 50.0% | |
GAGACTTCAAGGCACAGTTG+GGG | + | chr1.3:11091509-11091528 | MS.gene059480:CDS | 50.0% | |
GCAATAGACTCTGTTGTGGC+AGG | - | chr1.3:11090614-11090633 | None:intergenic | 50.0% | |
TAGACTCTGTTGTGGCAGGA+AGG | - | chr1.3:11090610-11090629 | None:intergenic | 50.0% | |
TCTATGGCACCTTGTTGAGC+TGG | - | chr1.3:11091205-11091224 | None:intergenic | 50.0% | |
TTCGCTGGGACATTGGATCA+AGG | + | chr1.3:11091709-11091728 | MS.gene059480:CDS | 50.0% | |
! | AGAGCATCAGGGGATGAAGA+AGG | - | chr1.3:11090701-11090720 | None:intergenic | 50.0% |
! | AGTCAAGCTGATGATGTGGC+TGG | + | chr1.3:11091373-11091392 | MS.gene059480:CDS | 50.0% |
! | CTTTCATGCGCAGAGCATCA+GGG | - | chr1.3:11090712-11090731 | None:intergenic | 50.0% |
! | GGTGCCATAGATTTGCAGAG+TGG | + | chr1.3:11091214-11091233 | MS.gene059480:CDS | 50.0% |
! | GTGAGGGCAGCTTTTGCTTT+GGG | - | chr1.3:11091145-11091164 | None:intergenic | 50.0% |
! | TCTTTCATGCGCAGAGCATC+AGG | - | chr1.3:11090713-11090732 | None:intergenic | 50.0% |
! | TGTGAGGGCAGCTTTTGCTT+TGG | - | chr1.3:11091146-11091165 | None:intergenic | 50.0% |
! | TTTCATGCGCAGAGCATCAG+GGG | - | chr1.3:11090711-11090730 | None:intergenic | 50.0% |
!! | CCTTAGTGGCTTGGTCAAAG+AGG | + | chr1.3:11091039-11091058 | MS.gene059480:CDS | 50.0% |
!! | CTTTCTGAGGCAGCGAATTG+AGG | + | chr1.3:11090961-11090980 | MS.gene059480:CDS | 50.0% |
!! | GCTCCAGAAGGGTATCATAC+AGG | - | chr1.3:11091567-11091586 | None:intergenic | 50.0% |
!! | GTCTATTGCTCAGGCATTGG+AGG | + | chr1.3:11090625-11090644 | MS.gene059480:CDS | 50.0% |
ATGGCACCTTGTTGAGCTGG+TGG | - | chr1.3:11091202-11091221 | None:intergenic | 55.0% | |
CAAACCTCACCGACCTTCTC+AGG | + | chr1.3:11090744-11090763 | MS.gene059480:CDS | 55.0% | |
CAGCTGTTCTTGCAGCTGTG+AGG | - | chr1.3:11091162-11091181 | None:intergenic | 55.0% | |
CGAGCTTCCCATTGATCACG+TGG | + | chr1.3:11091651-11091670 | MS.gene059480:CDS | 55.0% | |
GCAGCCTTCTCACTCAGTTG+AGG | + | chr1.3:11090792-11090811 | MS.gene059480:CDS | 55.0% | |
GGGACATTGGATCAAGGTGC+TGG | + | chr1.3:11091715-11091734 | MS.gene059480:CDS | 55.0% | |
TGAGGCAGCGAATTGAGGCA+AGG | + | chr1.3:11090966-11090985 | MS.gene059480:CDS | 55.0% | |
TGCTCTGCGCATGAAAGAGC+AGG | + | chr1.3:11090715-11090734 | MS.gene059480:CDS | 55.0% | |
CTTGCCTGAGAAGGTCGGTG+AGG | - | chr1.3:11090751-11090770 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 11090596 | 11091861 | 11090596 | ID=MS.gene059480 |
chr1.3 | mRNA | 11090596 | 11091861 | 11090596 | ID=MS.gene059480.t1;Parent=MS.gene059480 |
chr1.3 | exon | 11090596 | 11091861 | 11090596 | ID=MS.gene059480.t1.exon1;Parent=MS.gene059480.t1 |
chr1.3 | CDS | 11090596 | 11091861 | 11090596 | ID=cds.MS.gene059480.t1;Parent=MS.gene059480.t1 |
Gene Sequence |
Protein sequence |