AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059480.t1 MTR_1g009010 99.762 421 1 0 1 421 1 421 0.0 851
MS.gene059480.t1 MTR_3g109300 93.079 419 29 0 2 420 252 670 0.0 770
MS.gene059480.t1 MTR_7g087530 24.251 334 234 6 55 378 76 400 2.25e-21 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059480.t1 AT1G29150 86.265 415 56 1 7 421 6 419 0.0 704
MS.gene059480.t1 AT1G29150 86.265 415 56 1 7 421 6 419 0.0 704
MS.gene059480.t1 AT2G26990 21.690 355 259 7 34 378 55 400 5.21e-16 80.1

Find 93 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAATTTCAGGGATCTTT+TGG 0.192366 1.3:-11091473 None:intergenic
AAGCAGTTTCAAATAATTTC+AGG 0.248613 1.3:-11091483 None:intergenic
TACACAGCAACATGTATTTC+AGG 0.261616 1.3:-11091339 None:intergenic
GCAATATCTTGGACCTGATT+TGG 0.308447 1.3:+11091420 MS.gene059480:CDS
ATATTGCAGGCCTGCTTTAG+AGG 0.337336 1.3:-11091404 None:intergenic
TCTTTCATGCGCAGAGCATC+AGG 0.340066 1.3:-11090710 None:intergenic
TTCAGGCTAAAGACGGCTTT+GGG 0.358755 1.3:-11091322 None:intergenic
CAAGAAGTTCGCTGGGACAT+TGG 0.366159 1.3:+11091702 MS.gene059480:CDS
GCTTTCATTGCATCCAAATC+AGG 0.369042 1.3:-11091433 None:intergenic
TAGAAACCATTTCTAATGTT+GGG 0.370156 1.3:+11091791 MS.gene059480:CDS
GAAATGGTTTCTAAAGTTGC+AGG 0.374373 1.3:-11091781 None:intergenic
TTTCAGGCTAAAGACGGCTT+TGG 0.375816 1.3:-11091323 None:intergenic
CAAGCTTTGACTCTCCTTAG+TGG 0.388037 1.3:+11091025 MS.gene059480:CDS
GACTTTCCCAACATTAGAAA+TGG 0.391872 1.3:-11091797 None:intergenic
CCTTCTCAGGCAAGAGAATA+GGG 0.395870 1.3:+11090757 MS.gene059480:CDS
AATCCCACTCTGCAAATCTA+TGG 0.395909 1.3:-11091218 None:intergenic
CTTTCGCTCCACGTGATCAA+TGG 0.400421 1.3:-11091659 None:intergenic
CGAGACTTCAAGGCACAGTT+GGG 0.400670 1.3:+11091508 MS.gene059480:CDS
TTTGACTCTCCTTAGTGGCT+TGG 0.409710 1.3:+11091030 MS.gene059480:CDS
AACTGCTTTACGAGACTTCA+AGG 0.415681 1.3:+11091498 MS.gene059480:CDS
TACTCTTCTGATGGAAAGTA+AGG 0.419643 1.3:+11090994 MS.gene059480:CDS
CAAACCTCACCGACCTTCTC+AGG 0.419854 1.3:+11090744 MS.gene059480:CDS
ATCCCTGTATGATACCCTTC+TGG 0.426885 1.3:+11091561 MS.gene059480:CDS
AAAGCAGGCCTGCAATATCT+TGG 0.428220 1.3:+11091409 MS.gene059480:CDS
TCCATTCTTTATCGTGTACT+TGG 0.428345 1.3:+11090671 MS.gene059480:CDS
GCTTGGTCAAAGAGGTTAGA+AGG 0.428699 1.3:+11091047 MS.gene059480:CDS
TTAGAAACCATTTCTAATGT+TGG 0.430658 1.3:+11091790 MS.gene059480:CDS
ACCTTCTCAGGCAAGAGAAT+AGG 0.449371 1.3:+11090756 MS.gene059480:CDS
GTCTATTGCTCAGGCATTGG+AGG 0.453941 1.3:+11090625 MS.gene059480:CDS
GAGATCTCATGTCATTATCT+TGG 0.457490 1.3:-11091845 None:intergenic
AGCAGTTTCAAATAATTTCA+GGG 0.458625 1.3:-11091482 None:intergenic
AATTTCACTATGCAAAGAAA+TGG 0.464269 1.3:+11090910 MS.gene059480:CDS
AGCTGTTCTTGCAGCTGTGA+GGG 0.469625 1.3:-11091158 None:intergenic
GCAATTTCAACCCTTGAGAA+TGG 0.470337 1.3:-11091610 None:intergenic
CCTCTTTGACCAAGCCACTA+AGG 0.474592 1.3:-11091039 None:intergenic
GCTCCAGAAGGGTATCATAC+AGG 0.475823 1.3:-11091564 None:intergenic
TTTCGCTCCACGTGATCAAT+GGG 0.485219 1.3:-11091658 None:intergenic
AATCAGGTCCAAGATATTGC+AGG 0.487957 1.3:-11091417 None:intergenic
GATTCTGTTGCTAAAATACC+AGG 0.490110 1.3:+11090872 MS.gene059480:CDS
GGGATGATCCAATCGTTCAT+AGG 0.490676 1.3:+11091530 MS.gene059480:CDS
TGCTCTGCGCATGAAAGAGC+AGG 0.492288 1.3:+11090715 MS.gene059480:CDS
CCCTATTCTCTTGCCTGAGA+AGG 0.492528 1.3:-11090757 None:intergenic
CACAACAGAGTCTATTGCTC+AGG 0.495213 1.3:+11090616 MS.gene059480:CDS
AGAGTCTATTGCTCAGGCAT+TGG 0.499267 1.3:+11090622 MS.gene059480:CDS
ACCAAGTACACGATAAAGAA+TGG 0.500491 1.3:-11090672 None:intergenic
CAGCTGTTCTTGCAGCTGTG+AGG 0.517302 1.3:-11091159 None:intergenic
CTTTCTGAGGCAGCGAATTG+AGG 0.519044 1.3:+11090961 MS.gene059480:CDS
GTCAAGTGCCTATGAACGAT+TGG 0.521697 1.3:-11091538 None:intergenic
GGGACATTGGATCAAGGTGC+TGG 0.531380 1.3:+11091715 MS.gene059480:CDS
TCTATGGCACCTTGTTGAGC+TGG 0.543072 1.3:-11091202 None:intergenic
GCAATAGACTCTGTTGTGGC+AGG 0.543654 1.3:-11090611 None:intergenic
CTCCAGAAGGGTATCATACA+GGG 0.544409 1.3:-11091563 None:intergenic
CTCAATTCGCTGCCTCAGAA+AGG 0.545619 1.3:-11090960 None:intergenic
TGCAAAGATTCTGCTCCAGA+AGG 0.549152 1.3:-11091576 None:intergenic
CATGTTGCTGTGTAAGATCA+TGG 0.549562 1.3:+11091348 MS.gene059480:CDS
CGAGCTTCCCATTGATCACG+TGG 0.562921 1.3:+11091651 MS.gene059480:CDS
ACGAGACTTCAAGGCACAGT+TGG 0.565359 1.3:+11091507 MS.gene059480:CDS
CCTTAGTGGCTTGGTCAAAG+AGG 0.571283 1.3:+11091039 MS.gene059480:CDS
AGAGCATCAGGGGATGAAGA+AGG 0.572998 1.3:-11090698 None:intergenic
GATTGATTGAACCATTCTCA+AGG 0.573343 1.3:+11091599 MS.gene059480:CDS
GATTCTTCATGCTGAAGAGA+AGG 0.574447 1.3:+11091237 MS.gene059480:CDS
GTGCCATAGATTTGCAGAGT+GGG 0.575197 1.3:+11091215 MS.gene059480:CDS
TTCGCTGGGACATTGGATCA+AGG 0.575199 1.3:+11091709 MS.gene059480:CDS
GCAAGTCTATGTCTACAAGT+AGG 0.577240 1.3:-11091084 None:intergenic
CTTTCATGCGCAGAGCATCA+GGG 0.581958 1.3:-11090709 None:intergenic
GGAATCATATCCTCTAAAGC+AGG 0.583289 1.3:+11091394 MS.gene059480:CDS
TAGACTCTGTTGTGGCAGGA+AGG 0.584069 1.3:-11090607 None:intergenic
CATGTATTTCAGGCTAAAGA+CGG 0.589827 1.3:-11091329 None:intergenic
AAGGCTTGCTACTCTTCTGA+TGG 0.595479 1.3:+11090985 MS.gene059480:CDS
TGAGGCAGCGAATTGAGGCA+AGG 0.595879 1.3:+11090966 MS.gene059480:CDS
AGTCAAGCTGATGATGTGGC+TGG 0.596537 1.3:+11091373 MS.gene059480:CDS
ATGGCACCTTGTTGAGCTGG+TGG 0.598642 1.3:-11091199 None:intergenic
TTCTAATGTTGGGAAAGTCG+TGG 0.601063 1.3:+11091801 MS.gene059480:CDS
ATTTGTAACTCAGATGTCCC+TGG 0.601526 1.3:-11090890 None:intergenic
TTTCATGCGCAGAGCATCAG+GGG 0.602569 1.3:-11090708 None:intergenic
CTTGCCTGAGAAGGTCGGTG+AGG 0.609314 1.3:-11090748 None:intergenic
ATTGATTGAACCATTCTCAA+GGG 0.609884 1.3:+11091600 MS.gene059480:CDS
GCAGCCTTCTCACTCAGTTG+AGG 0.611712 1.3:+11090792 MS.gene059480:CDS
GCAAAGATTCTGCTCCAGAA+GGG 0.618885 1.3:-11091575 None:intergenic
ATGACCTCAACTGAGTGAGA+AGG 0.626789 1.3:-11090796 None:intergenic
ATGAAAAGCGTACCTTTCTG+AGG 0.631690 1.3:+11090948 MS.gene059480:CDS
TATGCAAAGAAATGGTGCAA+TGG 0.632106 1.3:+11090918 MS.gene059480:CDS
GGCAGGAAGGAAAGAAGACA+TGG 0.635532 1.3:-11090594 None:intergenic
ATTCTCTTGCCTGAGAAGGT+CGG 0.636643 1.3:-11090753 None:intergenic
TAGGATCGTCAAAGATGACA+AGG 0.650133 1.3:-11091741 None:intergenic
GAGACTTCAAGGCACAGTTG+GGG 0.656008 1.3:+11091509 MS.gene059480:CDS
TATGTTCCACCAGCTCAACA+AGG 0.660678 1.3:+11091193 MS.gene059480:CDS
GGTTAGTCAAGCTGATGATG+TGG 0.670365 1.3:+11091369 MS.gene059480:CDS
AAAACTGCAAAGATTGTGAG+GGG 0.672793 1.3:+11090842 MS.gene059480:CDS
ATTCTGTTGCTAAAATACCA+GGG 0.677431 1.3:+11090873 MS.gene059480:CDS
AGACTTCAAGGCACAGTTGG+GGG 0.696743 1.3:+11091510 MS.gene059480:CDS
CTGAGCAATAGACTCTGTTG+TGG 0.698808 1.3:-11090615 None:intergenic
GGTGCCATAGATTTGCAGAG+TGG 0.753705 1.3:+11091214 MS.gene059480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGCAGTTTCAAATAATTTC+AGG - chr1.3:11091486-11091505 None:intergenic 25.0%
! AATTTCACTATGCAAAGAAA+TGG + chr1.3:11090910-11090929 MS.gene059480:CDS 25.0%
! AGCAGTTTCAAATAATTTCA+GGG - chr1.3:11091485-11091504 None:intergenic 25.0%
! TAGAAACCATTTCTAATGTT+GGG + chr1.3:11091791-11091810 MS.gene059480:CDS 25.0%
! TTAGAAACCATTTCTAATGT+TGG + chr1.3:11091790-11091809 MS.gene059480:CDS 25.0%
!! AAATAATTTCAGGGATCTTT+TGG - chr1.3:11091476-11091495 None:intergenic 25.0%
AAAAACTGCAAAGATTGTGA+GGG + chr1.3:11090841-11090860 MS.gene059480:CDS 30.0%
ATTCTGTTGCTAAAATACCA+GGG + chr1.3:11090873-11090892 MS.gene059480:CDS 30.0%
ATTGATTGAACCATTCTCAA+GGG + chr1.3:11091600-11091619 MS.gene059480:CDS 30.0%
! GGATATATAGCATCAGTTTT+AGG - chr1.3:11091763-11091782 None:intergenic 30.0%
!!! TGCTTTGGGAAGATTTTTTA+AGG - chr1.3:11091131-11091150 None:intergenic 30.0%
AAAACTGCAAAGATTGTGAG+GGG + chr1.3:11090842-11090861 MS.gene059480:CDS 35.0%
ACCAAGTACACGATAAAGAA+TGG - chr1.3:11090675-11090694 None:intergenic 35.0%
CAAAAACTGCAAAGATTGTG+AGG + chr1.3:11090840-11090859 MS.gene059480:CDS 35.0%
CATGTATTTCAGGCTAAAGA+CGG - chr1.3:11091332-11091351 None:intergenic 35.0%
GACTTTCCCAACATTAGAAA+TGG - chr1.3:11091800-11091819 None:intergenic 35.0%
GATTCTGTTGCTAAAATACC+AGG + chr1.3:11090872-11090891 MS.gene059480:CDS 35.0%
GATTGATTGAACCATTCTCA+AGG + chr1.3:11091599-11091618 MS.gene059480:CDS 35.0%
TACACAGCAACATGTATTTC+AGG - chr1.3:11091342-11091361 None:intergenic 35.0%
TACTCTTCTGATGGAAAGTA+AGG + chr1.3:11090994-11091013 MS.gene059480:CDS 35.0%
TATGCAAAGAAATGGTGCAA+TGG + chr1.3:11090918-11090937 MS.gene059480:CDS 35.0%
TCCATTCTTTATCGTGTACT+TGG + chr1.3:11090671-11090690 MS.gene059480:CDS 35.0%
! AATCTTTGCAGTTTTTGCCT+TGG - chr1.3:11090837-11090856 None:intergenic 35.0%
! ATCTTTGCAGTTTTTGCCTT+GGG - chr1.3:11090836-11090855 None:intergenic 35.0%
! ATTCTTTTCCTTGATTCCCA+AGG + chr1.3:11090817-11090836 MS.gene059480:CDS 35.0%
! ATTTTAGACAAGAAGTTCGC+TGG + chr1.3:11091694-11091713 MS.gene059480:CDS 35.0%
! TTTTAGACAAGAAGTTCGCT+GGG + chr1.3:11091695-11091714 MS.gene059480:CDS 35.0%
!! GAAATGGTTTCTAAAGTTGC+AGG - chr1.3:11091784-11091803 None:intergenic 35.0%
AACTGCTTTACGAGACTTCA+AGG + chr1.3:11091498-11091517 MS.gene059480:CDS 40.0%
AATCAGGTCCAAGATATTGC+AGG - chr1.3:11091420-11091439 None:intergenic 40.0%
AATCCCACTCTGCAAATCTA+TGG - chr1.3:11091221-11091240 None:intergenic 40.0%
ATTTGTAACTCAGATGTCCC+TGG - chr1.3:11090893-11090912 None:intergenic 40.0%
CATGTTGCTGTGTAAGATCA+TGG + chr1.3:11091348-11091367 MS.gene059480:CDS 40.0%
GATTCTTCATGCTGAAGAGA+AGG + chr1.3:11091237-11091256 MS.gene059480:CDS 40.0%
GCAAGTCTATGTCTACAAGT+AGG - chr1.3:11091087-11091106 None:intergenic 40.0%
GCAATATCTTGGACCTGATT+TGG + chr1.3:11091420-11091439 MS.gene059480:CDS 40.0%
GCAATTTCAACCCTTGAGAA+TGG - chr1.3:11091613-11091632 None:intergenic 40.0%
GCTTTCATTGCATCCAAATC+AGG - chr1.3:11091436-11091455 None:intergenic 40.0%
TAGGATCGTCAAAGATGACA+AGG - chr1.3:11091744-11091763 None:intergenic 40.0%
TTCTAATGTTGGGAAAGTCG+TGG + chr1.3:11091801-11091820 MS.gene059480:CDS 40.0%
! AGTTTTTGCCTTGGGAATCA+AGG - chr1.3:11090828-11090847 None:intergenic 40.0%
! ATGAAAAGCGTACCTTTCTG+AGG + chr1.3:11090948-11090967 MS.gene059480:CDS 40.0%
! TCGTGGACAGTCTTTTTGTT+AGG + chr1.3:11091818-11091837 MS.gene059480:CDS 40.0%
!! GGAATCATATCCTCTAAAGC+AGG + chr1.3:11091394-11091413 MS.gene059480:CDS 40.0%
AAAGCAGGCCTGCAATATCT+TGG + chr1.3:11091409-11091428 MS.gene059480:CDS 45.0%
ACCTTCTCAGGCAAGAGAAT+AGG + chr1.3:11090756-11090775 MS.gene059480:CDS 45.0%
AGAGTCTATTGCTCAGGCAT+TGG + chr1.3:11090622-11090641 MS.gene059480:CDS 45.0%
ATATTGCAGGCCTGCTTTAG+AGG - chr1.3:11091407-11091426 None:intergenic 45.0%
ATCCCTGTATGATACCCTTC+TGG + chr1.3:11091561-11091580 MS.gene059480:CDS 45.0%
ATGACCTCAACTGAGTGAGA+AGG - chr1.3:11090799-11090818 None:intergenic 45.0%
ATTCTCTTGCCTGAGAAGGT+CGG - chr1.3:11090756-11090775 None:intergenic 45.0%
CACAACAGAGTCTATTGCTC+AGG + chr1.3:11090616-11090635 MS.gene059480:CDS 45.0%
CCTTCTCAGGCAAGAGAATA+GGG + chr1.3:11090757-11090776 MS.gene059480:CDS 45.0%
CTGAGCAATAGACTCTGTTG+TGG - chr1.3:11090618-11090637 None:intergenic 45.0%
GCAAAGATTCTGCTCCAGAA+GGG - chr1.3:11091578-11091597 None:intergenic 45.0%
GCTTGGTCAAAGAGGTTAGA+AGG + chr1.3:11091047-11091066 MS.gene059480:CDS 45.0%
GGGATGATCCAATCGTTCAT+AGG + chr1.3:11091530-11091549 MS.gene059480:CDS 45.0%
GTCAAGTGCCTATGAACGAT+TGG - chr1.3:11091541-11091560 None:intergenic 45.0%
GTGCCATAGATTTGCAGAGT+GGG + chr1.3:11091215-11091234 MS.gene059480:CDS 45.0%
TATGTTCCACCAGCTCAACA+AGG + chr1.3:11091193-11091212 MS.gene059480:CDS 45.0%
TGCAAAGATTCTGCTCCAGA+AGG - chr1.3:11091579-11091598 None:intergenic 45.0%
TTCAGGCTAAAGACGGCTTT+GGG - chr1.3:11091325-11091344 None:intergenic 45.0%
TTTCAGGCTAAAGACGGCTT+TGG - chr1.3:11091326-11091345 None:intergenic 45.0%
TTTCGCTCCACGTGATCAAT+GGG - chr1.3:11091661-11091680 None:intergenic 45.0%
TTTGACTCTCCTTAGTGGCT+TGG + chr1.3:11091030-11091049 MS.gene059480:CDS 45.0%
! CAAGCTTTGACTCTCCTTAG+TGG + chr1.3:11091025-11091044 MS.gene059480:CDS 45.0%
! GGTTAGTCAAGCTGATGATG+TGG + chr1.3:11091369-11091388 MS.gene059480:CDS 45.0%
!! AAGGCTTGCTACTCTTCTGA+TGG + chr1.3:11090985-11091004 MS.gene059480:CDS 45.0%
!! CTCCAGAAGGGTATCATACA+GGG - chr1.3:11091566-11091585 None:intergenic 45.0%
ACGAGACTTCAAGGCACAGT+TGG + chr1.3:11091507-11091526 MS.gene059480:CDS 50.0%
AGACTTCAAGGCACAGTTGG+GGG + chr1.3:11091510-11091529 MS.gene059480:CDS 50.0%
AGCTGTTCTTGCAGCTGTGA+GGG - chr1.3:11091161-11091180 None:intergenic 50.0%
CAAGAAGTTCGCTGGGACAT+TGG + chr1.3:11091702-11091721 MS.gene059480:CDS 50.0%
CCCTATTCTCTTGCCTGAGA+AGG - chr1.3:11090760-11090779 None:intergenic 50.0%
CCTCTTTGACCAAGCCACTA+AGG - chr1.3:11091042-11091061 None:intergenic 50.0%
CGAGACTTCAAGGCACAGTT+GGG + chr1.3:11091508-11091527 MS.gene059480:CDS 50.0%
CTCAATTCGCTGCCTCAGAA+AGG - chr1.3:11090963-11090982 None:intergenic 50.0%
CTTTCGCTCCACGTGATCAA+TGG - chr1.3:11091662-11091681 None:intergenic 50.0%
GAGACTTCAAGGCACAGTTG+GGG + chr1.3:11091509-11091528 MS.gene059480:CDS 50.0%
GCAATAGACTCTGTTGTGGC+AGG - chr1.3:11090614-11090633 None:intergenic 50.0%
TAGACTCTGTTGTGGCAGGA+AGG - chr1.3:11090610-11090629 None:intergenic 50.0%
TCTATGGCACCTTGTTGAGC+TGG - chr1.3:11091205-11091224 None:intergenic 50.0%
TTCGCTGGGACATTGGATCA+AGG + chr1.3:11091709-11091728 MS.gene059480:CDS 50.0%
! AGAGCATCAGGGGATGAAGA+AGG - chr1.3:11090701-11090720 None:intergenic 50.0%
! AGTCAAGCTGATGATGTGGC+TGG + chr1.3:11091373-11091392 MS.gene059480:CDS 50.0%
! CTTTCATGCGCAGAGCATCA+GGG - chr1.3:11090712-11090731 None:intergenic 50.0%
! GGTGCCATAGATTTGCAGAG+TGG + chr1.3:11091214-11091233 MS.gene059480:CDS 50.0%
! GTGAGGGCAGCTTTTGCTTT+GGG - chr1.3:11091145-11091164 None:intergenic 50.0%
! TCTTTCATGCGCAGAGCATC+AGG - chr1.3:11090713-11090732 None:intergenic 50.0%
! TGTGAGGGCAGCTTTTGCTT+TGG - chr1.3:11091146-11091165 None:intergenic 50.0%
! TTTCATGCGCAGAGCATCAG+GGG - chr1.3:11090711-11090730 None:intergenic 50.0%
!! CCTTAGTGGCTTGGTCAAAG+AGG + chr1.3:11091039-11091058 MS.gene059480:CDS 50.0%
!! CTTTCTGAGGCAGCGAATTG+AGG + chr1.3:11090961-11090980 MS.gene059480:CDS 50.0%
!! GCTCCAGAAGGGTATCATAC+AGG - chr1.3:11091567-11091586 None:intergenic 50.0%
!! GTCTATTGCTCAGGCATTGG+AGG + chr1.3:11090625-11090644 MS.gene059480:CDS 50.0%
ATGGCACCTTGTTGAGCTGG+TGG - chr1.3:11091202-11091221 None:intergenic 55.0%
CAAACCTCACCGACCTTCTC+AGG + chr1.3:11090744-11090763 MS.gene059480:CDS 55.0%
CAGCTGTTCTTGCAGCTGTG+AGG - chr1.3:11091162-11091181 None:intergenic 55.0%
CGAGCTTCCCATTGATCACG+TGG + chr1.3:11091651-11091670 MS.gene059480:CDS 55.0%
GCAGCCTTCTCACTCAGTTG+AGG + chr1.3:11090792-11090811 MS.gene059480:CDS 55.0%
GGGACATTGGATCAAGGTGC+TGG + chr1.3:11091715-11091734 MS.gene059480:CDS 55.0%
TGAGGCAGCGAATTGAGGCA+AGG + chr1.3:11090966-11090985 MS.gene059480:CDS 55.0%
TGCTCTGCGCATGAAAGAGC+AGG + chr1.3:11090715-11090734 MS.gene059480:CDS 55.0%
CTTGCCTGAGAAGGTCGGTG+AGG - chr1.3:11090751-11090770 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 11090596 11091861 11090596 ID=MS.gene059480
chr1.3 mRNA 11090596 11091861 11090596 ID=MS.gene059480.t1;Parent=MS.gene059480
chr1.3 exon 11090596 11091861 11090596 ID=MS.gene059480.t1.exon1;Parent=MS.gene059480.t1
chr1.3 CDS 11090596 11091861 11090596 ID=cds.MS.gene059480.t1;Parent=MS.gene059480.t1
Gene Sequence

>MS.gene059480

ATGTCTTCTTTCCTTCCTGCCACAACAGAGTCTATTGCTCAGGCATTGGAGGCTAAAGACGCATCTGAGTCTATCTCCATTCTTTATCGTGTACTTGGTGATCCTTCTTCATCCCCTGATGCTCTGCGCATGAAAGAGCAGGCTATCACAAACCTCACCGACCTTCTCAGGCAAGAGAATAGGGCAGAAGATCTGCGCAGCCTTCTCACTCAGTTGAGGTCATTCTTTTCCTTGATTCCCAAGGCAAAAACTGCAAAGATTGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCAGGGACATCTGAGTTACAAATTTCACTATGCAAAGAAATGGTGCAATGGACTCGCGATGAAAAGCGTACCTTTCTGAGGCAGCGAATTGAGGCAAGGCTTGCTACTCTTCTGATGGAAAGTAAGGAATATTCACAAGCTTTGACTCTCCTTAGTGGCTTGGTCAAAGAGGTTAGAAGGCTAGATGACAAACTCCTACTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTAAAAAATCTTCCCAAAGCAAAAGCTGCCCTCACAGCTGCAAGAACAGCTGCAAATGCTATTTATGTTCCACCAGCTCAACAAGGTGCCATAGATTTGCAGAGTGGGATTCTTCATGCTGAAGAGAAGGATTACAAAACTGCATACAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCCAAAGCCGTCTTTAGCCTGAAATACATGTTGCTGTGTAAGATCATGGTTAGTCAAGCTGATGATGTGGCTGGAATCATATCCTCTAAAGCAGGCCTGCAATATCTTGGACCTGATTTGGATGCAATGAAAGCTGTTGCAGATGCTCATTCCAAAAGATCCCTGAAATTATTTGAAACTGCTTTACGAGACTTCAAGGCACAGTTGGGGGATGATCCAATCGTTCATAGGCACTTGACATCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGCAGATTGATTGAACCATTCTCAAGGGTTGAAATTGCACATATTGCTGAACTTATCGAGCTTCCCATTGATCACGTGGAGCGAAAGATGTCTCAGATGATTTTAGACAAGAAGTTCGCTGGGACATTGGATCAAGGTGCTGGATGCCTTGTCATCTTTGACGATCCTAAAACTGATGCTATATATCCTGCAACTTTAGAAACCATTTCTAATGTTGGGAAAGTCGTGGACAGTCTTTTTGTTAGGTCTGCCAAGATAATGACATGA

Protein sequence

>MS.gene059480.t1

MSSFLPATTESIAQALEAKDASESISILYRVLGDPSSSPDALRMKEQAITNLTDLLRQENRAEDLRSLLTQLRSFFSLIPKAKTAKIVRGIIDSVAKIPGTSELQISLCKEMVQWTRDEKRTFLRQRIEARLATLLMESKEYSQALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLKNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFETALRDFKAQLGDDPIVHRHLTSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLFVRSAKIMT