Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32507.t1 | XP_024641057.1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 8.10E-128 | 466.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32507.t1 | Q8W487 | 58.8 | 194 | 74 | 3 | 63 | 254 | 60 | 249 | 1.8e-46 | 187.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32507.t1 | A0A396I021 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 5.9e-128 | 466.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32507 | MS.gene034255 | PPI |
| MS.gene32507 | MS.gene053230 | PPI |
| MS.gene32507 | MS.gene040269 | PPI |
| MS.gene000604 | MS.gene32507 | PPI |
| MS.gene32507 | MS.gene89319 | PPI |
| MS.gene32507 | MS.gene46105 | PPI |
| MS.gene32507 | MS.gene040271 | PPI |
| MS.gene32507 | MS.gene46104 | PPI |
| MS.gene32507 | MS.gene040272 | PPI |
| MS.gene32507 | MS.gene055201 | PPI |
| MS.gene32507 | MS.gene67544 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32507.t1 | MTR_5g080880 | 99.213 | 254 | 2 | 0 | 1 | 254 | 1 | 254 | 0.0 | 523 |
| MS.gene32507.t1 | MTR_5g080870 | 67.059 | 255 | 49 | 6 | 1 | 255 | 1 | 220 | 2.60e-110 | 321 |
| MS.gene32507.t1 | MTR_7g063520 | 48.000 | 250 | 111 | 5 | 8 | 254 | 20 | 253 | 2.86e-72 | 221 |
| MS.gene32507.t1 | MTR_4g006560 | 40.881 | 159 | 87 | 3 | 97 | 254 | 83 | 235 | 7.30e-31 | 115 |
| MS.gene32507.t1 | MTR_1g013120 | 32.083 | 240 | 143 | 9 | 24 | 254 | 4 | 232 | 9.71e-26 | 101 |
| MS.gene32507.t1 | MTR_5g093000 | 32.164 | 171 | 90 | 7 | 92 | 253 | 59 | 212 | 3.42e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32507.t1 | AT3G55605 | 50.000 | 270 | 106 | 8 | 1 | 254 | 1 | 257 | 2.42e-70 | 217 |
| MS.gene32507.t1 | AT5G05990 | 46.212 | 264 | 120 | 5 | 5 | 254 | 3 | 258 | 8.42e-70 | 216 |
| MS.gene32507.t1 | AT2G39795 | 53.299 | 197 | 86 | 3 | 60 | 254 | 57 | 249 | 1.79e-64 | 201 |
| MS.gene32507.t1 | AT5G02050 | 43.750 | 272 | 129 | 5 | 1 | 254 | 1 | 266 | 1.26e-58 | 187 |
| MS.gene32507.t1 | AT2G39790 | 35.249 | 261 | 138 | 6 | 1 | 253 | 1 | 238 | 2.04e-38 | 134 |
| MS.gene32507.t1 | AT1G15870 | 33.824 | 204 | 121 | 5 | 54 | 254 | 48 | 240 | 1.53e-26 | 103 |
| MS.gene32507.t1 | AT1G80720 | 32.105 | 190 | 115 | 6 | 68 | 254 | 10 | 188 | 1.02e-21 | 89.7 |
| MS.gene32507.t1 | AT1G80720 | 32.105 | 190 | 115 | 6 | 68 | 254 | 62 | 240 | 1.06e-21 | 90.9 |
| MS.gene32507.t1 | AT4G31930 | 32.632 | 190 | 114 | 7 | 68 | 253 | 53 | 232 | 7.21e-21 | 88.6 |
| MS.gene32507.t1 | AT4G32605 | 32.927 | 164 | 91 | 5 | 97 | 253 | 66 | 217 | 1.14e-17 | 79.7 |
Find 54 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTATCAACTATCTTAAA+TGG | 0.175868 | 5.1:-62788997 | None:intergenic |
| TCCACAAGTACTTAGAAATA+AGG | 0.241404 | 5.1:+62789765 | MS.gene32507:CDS |
| CACATGCCTGATTTGGTTAC+TGG | 0.250062 | 5.1:+62789081 | MS.gene32507:CDS |
| AGTGTTATTGTCTGATTTCC+TGG | 0.252098 | 5.1:-62789018 | None:intergenic |
| ATCAGACAATAACACTTAAA+AGG | 0.289378 | 5.1:+62789025 | MS.gene32507:CDS |
| TAAGAAGGATGGGCCCTCTT+TGG | 0.320568 | 5.1:+62789191 | MS.gene32507:CDS |
| CCACAAGTACTTAGAAATAA+GGG | 0.328236 | 5.1:+62789766 | MS.gene32507:CDS |
| TGAGGTTCACATGCCTGATT+TGG | 0.354382 | 5.1:+62789074 | MS.gene32507:CDS |
| CTGTCGATAACAATCTCATC+TGG | 0.355760 | 5.1:-62789234 | None:intergenic |
| CCAAGTCAAGCACTTTCGTT+AGG | 0.373305 | 5.1:+62786411 | MS.gene32507:CDS |
| AGAAGTACATACTGAAAATC+TGG | 0.385204 | 5.1:-62789309 | None:intergenic |
| GCTCAGGAAACCGATGATTT+CGG | 0.391310 | 5.1:+62786620 | MS.gene32507:CDS |
| ATCTTAAATGGGAAATTGCT+TGG | 0.407574 | 5.1:-62788985 | None:intergenic |
| CCCTTATTTCTAAGTACTTG+TGG | 0.408675 | 5.1:-62789766 | None:intergenic |
| CGCCGCCGTCAATCGATACC+AGG | 0.411836 | 5.1:+62786496 | MS.gene32507:CDS |
| TTCAGTCAGTGTTTCTAAGA+AGG | 0.415683 | 5.1:+62789176 | MS.gene32507:CDS |
| TGCAAGAAATTTGTTGTGCT+TGG | 0.436674 | 5.1:-62789797 | None:intergenic |
| TGAAAATCTGGCCCGTCATA+AGG | 0.439441 | 5.1:-62789297 | None:intergenic |
| TCTTCTCCGTTTCATCGAAT+CGG | 0.447658 | 5.1:+62786586 | MS.gene32507:CDS |
| CAAGGATAGTAGAGAATACT+TGG | 0.453079 | 5.1:+62789835 | MS.gene32507:CDS |
| GATTATCAACTATCTTAAAT+GGG | 0.456111 | 5.1:-62788996 | None:intergenic |
| TCTTCACCAGTAACCAAATC+AGG | 0.463223 | 5.1:-62789087 | None:intergenic |
| TTAGAAACACTGACTGAAAG+TGG | 0.463235 | 5.1:-62789171 | None:intergenic |
| GTCAGTGTTTCTAAGAAGGA+TGG | 0.492712 | 5.1:+62789180 | MS.gene32507:CDS |
| GAGAAGAATATCGTCGGAGG+TGG | 0.494464 | 5.1:-62786570 | None:intergenic |
| ATCGGAAATCACTTGTGCTC+AGG | 0.496436 | 5.1:+62786604 | MS.gene32507:CDS |
| TGATCATCAAGATGATGATA+AGG | 0.496458 | 5.1:+62789113 | MS.gene32507:CDS |
| TTTAAGATAGTTGATAATCC+AGG | 0.504200 | 5.1:+62789000 | MS.gene32507:CDS |
| CAAGTCAAGCACTTTCGTTA+GGG | 0.512325 | 5.1:+62786412 | MS.gene32507:CDS |
| GAAAGCACGGCGCGATGACC+CGG | 0.517251 | 5.1:-62786473 | None:intergenic |
| TGATTTCCGATTCGATGAAA+CGG | 0.520694 | 5.1:-62786592 | None:intergenic |
| ACTTACAGCGCCGAAATCAT+CGG | 0.522056 | 5.1:-62786630 | None:intergenic |
| ACACTTAAAAGGACTTATCA+AGG | 0.527097 | 5.1:+62789036 | MS.gene32507:CDS |
| ATGAACAGATTCCTTATGAC+GGG | 0.541918 | 5.1:+62789286 | MS.gene32507:CDS |
| ATTGACGGCGGCGGAAAGCA+CGG | 0.549833 | 5.1:-62786486 | None:intergenic |
| TGAACCCTGGTATCGATTGA+CGG | 0.565956 | 5.1:-62786501 | None:intergenic |
| AGGTGAAGAAATTCAAGTTG+AGG | 0.571505 | 5.1:+62789056 | MS.gene32507:CDS |
| AGAAGAATATCGTCGGAGGT+GGG | 0.577026 | 5.1:-62786569 | None:intergenic |
| TGTCGATAACAATCTCATCT+GGG | 0.591480 | 5.1:-62789233 | None:intergenic |
| CCTAACGAAAGTGCTTGACT+TGG | 0.591991 | 5.1:-62786411 | None:intergenic |
| CTGGTATCGATTGACGGCGG+CGG | 0.595525 | 5.1:-62786495 | None:intergenic |
| TCAGTGTTTCTAAGAAGGAT+GGG | 0.595788 | 5.1:+62789181 | MS.gene32507:CDS |
| CACAAGTACTTAGAAATAAG+GGG | 0.598764 | 5.1:+62789767 | MS.gene32507:CDS |
| ACACAACTGAACTCCAAAGA+GGG | 0.618264 | 5.1:-62789204 | None:intergenic |
| GATGAACAGATTCCTTATGA+CGG | 0.641036 | 5.1:+62789285 | MS.gene32507:CDS |
| ATAGTAGAGAATACTTGGTG+TGG | 0.641539 | 5.1:+62789840 | MS.gene32507:CDS |
| AACACAACTGAACTCCAAAG+AGG | 0.648826 | 5.1:-62789205 | None:intergenic |
| GCCGCCGTCAATCGATACCA+GGG | 0.649914 | 5.1:+62786497 | MS.gene32507:CDS |
| ACAGAAGAAAAGTGAAACGT+AGG | 0.650656 | 5.1:-62786530 | None:intergenic |
| GAAACGGAGAAGAATATCGT+CGG | 0.655705 | 5.1:-62786576 | None:intergenic |
| ACGTAGGAACAAATGAACCC+TGG | 0.662093 | 5.1:-62786514 | None:intergenic |
| ACGGAGAAGAATATCGTCGG+AGG | 0.701354 | 5.1:-62786573 | None:intergenic |
| GCATGAGTACATGATCAACA+AGG | 0.729521 | 5.1:+62789817 | MS.gene32507:CDS |
| ACCCTGGTATCGATTGACGG+CGG | 0.780259 | 5.1:-62786498 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTAATTTTTCTGTT+TGG | - | chr5.1:62787378-62787397 | None:intergenic | 10.0% |
| !! | AAATGTTGAAAATTTGAATT+TGG | + | chr5.1:62788886-62788905 | MS.gene32507:intron | 15.0% |
| !! | AAGAGTAAAAAAAATTATCT+TGG | + | chr5.1:62788148-62788167 | MS.gene32507:intron | 15.0% |
| !! | TAAATATGATTATCTTAGTT+TGG | + | chr5.1:62787768-62787787 | MS.gene32507:intron | 15.0% |
| !! | TGAAATGAAACTTATTATTA+AGG | - | chr5.1:62788521-62788540 | None:intergenic | 15.0% |
| !! | TTATTTATGAAGAAAGAATT+TGG | + | chr5.1:62787626-62787645 | MS.gene32507:intron | 15.0% |
| !!! | AAATGTTGAAAAAATGATTT+TGG | + | chr5.1:62788941-62788960 | MS.gene32507:intron | 15.0% |
| !!! | CTTTTACTCTATTAATTTAA+TGG | + | chr5.1:62788199-62788218 | MS.gene32507:intron | 15.0% |
| !! | AGTAAAAATAAGTTATAAGC+TGG | - | chr5.1:62786829-62786848 | None:intergenic | 20.0% |
| !! | ATTATAATAAAAGACCTGTT+TGG | + | chr5.1:62787004-62787023 | MS.gene32507:intron | 20.0% |
| !! | GAAACTTATTATTAAGGTAT+AGG | - | chr5.1:62788515-62788534 | None:intergenic | 20.0% |
| !! | GATTATCAACTATCTTAAAT+GGG | - | chr5.1:62788999-62789018 | None:intergenic | 20.0% |
| !! | GTTAAGGTTAAAAAAGTTTA+TGG | - | chr5.1:62787556-62787575 | None:intergenic | 20.0% |
| !! | TAAATATGAATGACATACAA+AGG | - | chr5.1:62787411-62787430 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTGGTTGATAT+AGG | + | chr5.1:62788951-62788970 | MS.gene32507:intron | 20.0% |
| !!! | AAATGATTTTGGTTGATATA+GGG | + | chr5.1:62788952-62788971 | MS.gene32507:intron | 20.0% |
| !!! | AACAATCTGAAATTTAGATT+GGG | + | chr5.1:62789542-62789561 | MS.gene32507:intron | 20.0% |
| !!! | AAGAATTGAAAGTATACAAA+CGG | - | chr5.1:62789667-62789686 | None:intergenic | 20.0% |
| !!! | ACAAGATTTTTAAAATAGAC+AGG | - | chr5.1:62788004-62788023 | None:intergenic | 20.0% |
| !!! | CAAGATTTTTAAAATAGACA+GGG | - | chr5.1:62788003-62788022 | None:intergenic | 20.0% |
| ! | AAAATTAACAGTTACCAAAC+AGG | - | chr5.1:62787021-62787040 | None:intergenic | 25.0% |
| ! | AAGAAGATAGGATATTTAAC+AGG | + | chr5.1:62788664-62788683 | MS.gene32507:intron | 25.0% |
| ! | AATCCTTAAAATTAGTCAAG+TGG | + | chr5.1:62788173-62788192 | MS.gene32507:intron | 25.0% |
| ! | ACAAAAGACTACAAAACAAA+AGG | - | chr5.1:62788762-62788781 | None:intergenic | 25.0% |
| ! | AGAAAATTTAGTGAGAAACT+GGG | + | chr5.1:62788031-62788050 | MS.gene32507:intron | 25.0% |
| ! | ATCAGACAATAACACTTAAA+AGG | + | chr5.1:62789025-62789044 | MS.gene32507:CDS | 25.0% |
| ! | ATCATGAGTCTAATGAATTA+AGG | - | chr5.1:62786664-62786683 | None:intergenic | 25.0% |
| ! | ATCCTTAAAATTAGTCAAGT+GGG | + | chr5.1:62788174-62788193 | MS.gene32507:intron | 25.0% |
| ! | ATTTATATATAGGGTCTGTT+TGG | + | chr5.1:62786721-62786740 | MS.gene32507:intron | 25.0% |
| ! | CAACAAGATAATCATTGTTA+AGG | - | chr5.1:62787572-62787591 | None:intergenic | 25.0% |
| ! | CATTGATATCAAGTTTCTAT+TGG | + | chr5.1:62788539-62788558 | MS.gene32507:intron | 25.0% |
| ! | CTAATTCAAGTAGTTTATAG+CGG | + | chr5.1:62787090-62787109 | MS.gene32507:intron | 25.0% |
| ! | GGATTATCAACTATCTTAAA+TGG | - | chr5.1:62789000-62789019 | None:intergenic | 25.0% |
| ! | TAGAAAATTTAGTGAGAAAC+TGG | + | chr5.1:62788030-62788049 | MS.gene32507:intron | 25.0% |
| ! | TATTAAGGTATAGGAACAAA+AGG | - | chr5.1:62788506-62788525 | None:intergenic | 25.0% |
| ! | TTAAATATCCTATCTTCTTC+CGG | - | chr5.1:62788663-62788682 | None:intergenic | 25.0% |
| ! | TTTATGAAGAAAGAATTTGG+CGG | + | chr5.1:62787629-62787648 | MS.gene32507:intron | 25.0% |
| ! | TTTCTAATGTTTGTGTAGTT+TGG | + | chr5.1:62788068-62788087 | MS.gene32507:intron | 25.0% |
| !! | ACATCAGTGTTGTTAAATAA+AGG | + | chr5.1:62789389-62789408 | MS.gene32507:intron | 25.0% |
| !! | ATATGATTATCTTAGTTTGG+AGG | + | chr5.1:62787771-62787790 | MS.gene32507:intron | 25.0% |
| !! | GAACAATCTGAAATTTAGAT+TGG | + | chr5.1:62789541-62789560 | MS.gene32507:intron | 25.0% |
| !! | GTGATTGAATTTGTAGTTTT+TGG | - | chr5.1:62787459-62787478 | None:intergenic | 25.0% |
| !! | TTCAATTCTTGTTGTATCTA+AGG | + | chr5.1:62789677-62789696 | MS.gene32507:intron | 25.0% |
| !!! | AAAAAGTTTATGGCTTTGTT+TGG | - | chr5.1:62787546-62787565 | None:intergenic | 25.0% |
| !!! | AATTGTCTAATTTTTTCCAG+TGG | + | chr5.1:62787913-62787932 | MS.gene32507:intron | 25.0% |
| !!! | TAAGACATAAATTTGGTTTG+TGG | + | chr5.1:62786954-62786973 | MS.gene32507:intron | 25.0% |
| !!! | TTAAAACTTTTAGCTTACCA+TGG | + | chr5.1:62786893-62786912 | MS.gene32507:intron | 25.0% |
| !!! | TTATTTCTATGAGCTTATAG+CGG | + | chr5.1:62787056-62787075 | MS.gene32507:intron | 25.0% |
| !!! | TTTAAGATAGTTGATAATCC+AGG | + | chr5.1:62789000-62789019 | MS.gene32507:CDS | 25.0% |
| !!! | TTTTTCAATTGAGATTGCAA+GGG | - | chr5.1:62787173-62787192 | None:intergenic | 25.0% |
| !!! | TTTTTGGTAAACTTAGCAAA+TGG | - | chr5.1:62787443-62787462 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATTGAGATTGCA+AGG | - | chr5.1:62787174-62787193 | None:intergenic | 25.0% |
| AAAGATTATCTTTCGTGAGA+GGG | + | chr5.1:62787818-62787837 | MS.gene32507:intron | 30.0% | |
| ACACTTAAAAGGACTTATCA+AGG | + | chr5.1:62789036-62789055 | MS.gene32507:CDS | 30.0% | |
| ATAGCTTATAGCTTATAAGC+TGG | + | chr5.1:62786980-62786999 | MS.gene32507:intron | 30.0% | |
| ATCTGTTCATCAGAAAAATC+AGG | - | chr5.1:62789276-62789295 | None:intergenic | 30.0% | |
| ATCTTAAATGGGAAATTGCT+TGG | - | chr5.1:62788988-62789007 | None:intergenic | 30.0% | |
| ATTGATCAGAAAAACTCAAC+CGG | + | chr5.1:62786454-62786473 | MS.gene32507:CDS | 30.0% | |
| ATTTAACAGGTTGTACAATC+TGG | + | chr5.1:62788677-62788696 | MS.gene32507:intron | 30.0% | |
| CACAAGTACTTAGAAATAAG+GGG | + | chr5.1:62789767-62789786 | MS.gene32507:CDS | 30.0% | |
| CACGAAAGATAATCTTTAGT+TGG | - | chr5.1:62787815-62787834 | None:intergenic | 30.0% | |
| CCACAAGTACTTAGAAATAA+GGG | + | chr5.1:62789766-62789785 | MS.gene32507:CDS | 30.0% | |
| GTATTAATATGCTCAGAATC+AGG | - | chr5.1:62788832-62788851 | None:intergenic | 30.0% | |
| TAAAGATTATCTTTCGTGAG+AGG | + | chr5.1:62787817-62787836 | MS.gene32507:intron | 30.0% | |
| TCCACAAGTACTTAGAAATA+AGG | + | chr5.1:62789765-62789784 | MS.gene32507:CDS | 30.0% | |
| TGAACTTATAGCTTATAAGC+TGG | + | chr5.1:62786757-62786776 | MS.gene32507:intron | 30.0% | |
| TGATATCAAGTTTCTATTGG+TGG | + | chr5.1:62788542-62788561 | MS.gene32507:intron | 30.0% | |
| TGATCATCAAGATGATGATA+AGG | + | chr5.1:62789113-62789132 | MS.gene32507:CDS | 30.0% | |
| TTATGAAGAAAGAATTTGGC+GGG | + | chr5.1:62787630-62787649 | MS.gene32507:intron | 30.0% | |
| TTCGAAATATCCAAATTGGA+AGG | - | chr5.1:62787978-62787997 | None:intergenic | 30.0% | |
| TTCTCAAAAAGGATTCGAAT+GGG | + | chr5.1:62788114-62788133 | MS.gene32507:intron | 30.0% | |
| TTTCTCAAAAAGGATTCGAA+TGG | + | chr5.1:62788113-62788132 | MS.gene32507:intron | 30.0% | |
| TTTGTGTAGTTTGGAAACTT+AGG | + | chr5.1:62788077-62788096 | MS.gene32507:intron | 30.0% | |
| ! | AACCCACTTGACTAATTTTA+AGG | - | chr5.1:62788179-62788198 | None:intergenic | 30.0% |
| ! | AGAAGTACATACTGAAAATC+TGG | - | chr5.1:62789312-62789331 | None:intergenic | 30.0% |
| ! | AGATTCTTCCATGTTTTACA+GGG | + | chr5.1:62789715-62789734 | MS.gene32507:intron | 30.0% |
| ! | ATCACTTTCTGTTTGAAGTT+GGG | + | chr5.1:62788254-62788273 | MS.gene32507:intron | 30.0% |
| ! | CAATTTTACCCTGTAATCTT+AGG | + | chr5.1:62786921-62786940 | MS.gene32507:intron | 30.0% |
| ! | GCTAGCTTATTTGTAATGTT+TGG | - | chr5.1:62787267-62787286 | None:intergenic | 30.0% |
| ! | GTAATGTTTGGTGAAATTAG+CGG | - | chr5.1:62787255-62787274 | None:intergenic | 30.0% |
| ! | TAACTGATAAACTAGCTTAG+AGG | - | chr5.1:62787508-62787527 | None:intergenic | 30.0% |
| ! | TTTTCAATTGAGATTGCAAG+GGG | - | chr5.1:62787172-62787191 | None:intergenic | 30.0% |
| !! | AATTTTCAGGGTTTTGTGTT+AGG | + | chr5.1:62787850-62787869 | MS.gene32507:intron | 30.0% |
| !! | GCATTCAATGTTTTAAACCA+GGG | + | chr5.1:62789364-62789383 | MS.gene32507:intron | 30.0% |
| !! | TGGTTGGTAAGACATAAATT+TGG | + | chr5.1:62786947-62786966 | MS.gene32507:intron | 30.0% |
| !!! | GGTGTGATTTTTTCTCAAAA+AGG | + | chr5.1:62788103-62788122 | MS.gene32507:intron | 30.0% |
| !!! | TCTAATTTTTTCCAGTGGTT+TGG | + | chr5.1:62787918-62787937 | MS.gene32507:intron | 30.0% |
| !!! | TTTACCTCAAGAGTTTTTTC+CGG | + | chr5.1:62788629-62788648 | MS.gene32507:intron | 30.0% |
| AAGATTATCTTTCGTGAGAG+GGG | + | chr5.1:62787819-62787838 | MS.gene32507:intron | 35.0% | |
| AATCTACACCTCATTACCAT+CGG | - | chr5.1:62787709-62787728 | None:intergenic | 35.0% | |
| ACAGAAGAAAAGTGAAACGT+AGG | - | chr5.1:62786533-62786552 | None:intergenic | 35.0% | |
| AGAAACTGGGTGTGATTATT+TGG | + | chr5.1:62788044-62788063 | MS.gene32507:intron | 35.0% | |
| ATCCAAATCCCTGTAAAACA+TGG | - | chr5.1:62789726-62789745 | None:intergenic | 35.0% | |
| ATGAACAGATTCCTTATGAC+GGG | + | chr5.1:62789286-62789305 | MS.gene32507:CDS | 35.0% | |
| CAAGGATAGTAGAGAATACT+TGG | + | chr5.1:62789835-62789854 | MS.gene32507:CDS | 35.0% | |
| CTTTCAAATAGCAGCTATAG+TGG | + | chr5.1:62789488-62789507 | MS.gene32507:intron | 35.0% | |
| GAGAATGATTGTTACGAAAC+AGG | - | chr5.1:62786803-62786822 | None:intergenic | 35.0% | |
| GATGAACAGATTCCTTATGA+CGG | + | chr5.1:62789285-62789304 | MS.gene32507:CDS | 35.0% | |
| GGAGTTCGAAATATCCAAAT+TGG | - | chr5.1:62787982-62788001 | None:intergenic | 35.0% | |
| GTAGTTTGGAAACTTAGGAA+CGG | + | chr5.1:62788082-62788101 | MS.gene32507:intron | 35.0% | |
| TGTCGATAACAATCTCATCT+GGG | - | chr5.1:62789236-62789255 | None:intergenic | 35.0% | |
| TTGATCAGAAAAACTCAACC+GGG | + | chr5.1:62786455-62786474 | MS.gene32507:CDS | 35.0% | |
| ! | AGTGTTATTGTCTGATTTCC+TGG | - | chr5.1:62789021-62789040 | None:intergenic | 35.0% |
| ! | AGTTCTATGTACTTGTTGAG+GGG | + | chr5.1:62788285-62788304 | MS.gene32507:intron | 35.0% |
| ! | AGTTGAGTTCATCTAGTTTC+AGG | + | chr5.1:62788449-62788468 | MS.gene32507:intron | 35.0% |
| ! | ATAGTAGAGAATACTTGGTG+TGG | + | chr5.1:62789840-62789859 | MS.gene32507:CDS | 35.0% |
| ! | ATGGTAATGAGGTGTAGATT+GGG | + | chr5.1:62787709-62787728 | MS.gene32507:intron | 35.0% |
| ! | CAGTTCTATGTACTTGTTGA+GGG | + | chr5.1:62788284-62788303 | MS.gene32507:intron | 35.0% |
| ! | CTTGTTGTATCTAAGGCATA+TGG | + | chr5.1:62789684-62789703 | MS.gene32507:intron | 35.0% |
| ! | GAGATTCTTCCATGTTTTAC+AGG | + | chr5.1:62789714-62789733 | MS.gene32507:intron | 35.0% |
| ! | GATCACTTTCTGTTTGAAGT+TGG | + | chr5.1:62788253-62788272 | MS.gene32507:intron | 35.0% |
| ! | GTTGAGTTCATCTAGTTTCA+GGG | + | chr5.1:62788450-62788469 | MS.gene32507:intron | 35.0% |
| ! | TCACTTTCTGTTTGAAGTTG+GGG | + | chr5.1:62788255-62788274 | MS.gene32507:intron | 35.0% |
| ! | TCAGCTATAAGCTAGCTTAT+AGG | + | chr5.1:62787297-62787316 | MS.gene32507:intron | 35.0% |
| ! | TCAGTGTTTCTAAGAAGGAT+GGG | + | chr5.1:62789181-62789200 | MS.gene32507:CDS | 35.0% |
| ! | TCAGTTCTATGTACTTGTTG+AGG | + | chr5.1:62788283-62788302 | MS.gene32507:intron | 35.0% |
| ! | TGATTTCCGATTCGATGAAA+CGG | - | chr5.1:62786595-62786614 | None:intergenic | 35.0% |
| ! | TTAGAAACACTGACTGAAAG+TGG | - | chr5.1:62789174-62789193 | None:intergenic | 35.0% |
| ! | TTCAGTCAGTGTTTCTAAGA+AGG | + | chr5.1:62789176-62789195 | MS.gene32507:CDS | 35.0% |
| ! | TTCCATGTTTTACAGGGATT+TGG | + | chr5.1:62789721-62789740 | MS.gene32507:intron | 35.0% |
| !! | AGGTGAAGAAATTCAAGTTG+AGG | + | chr5.1:62789056-62789075 | MS.gene32507:CDS | 35.0% |
| !! | AGTGAGACTTTGAAATGTCT+TGG | + | chr5.1:62787941-62787960 | MS.gene32507:intron | 35.0% |
| !! | CCCTTATTTCTAAGTACTTG+TGG | - | chr5.1:62789769-62789788 | None:intergenic | 35.0% |
| !! | CGCATTCAATGTTTTAAACC+AGG | + | chr5.1:62789363-62789382 | MS.gene32507:intron | 35.0% |
| !! | CTATAGCACTTTTTGTGTAG+CGG | + | chr5.1:62789513-62789532 | MS.gene32507:intron | 35.0% |
| !! | GTGAGACTTTGAAATGTCTT+GGG | + | chr5.1:62787942-62787961 | MS.gene32507:intron | 35.0% |
| !! | TGAGACTTTGAAATGTCTTG+GGG | + | chr5.1:62787943-62787962 | MS.gene32507:intron | 35.0% |
| !! | TGCAAGAAATTTGTTGTGCT+TGG | - | chr5.1:62789800-62789819 | None:intergenic | 35.0% |
| !!! | AGGGGTTGGTATTAATTTTC+AGG | + | chr5.1:62787837-62787856 | MS.gene32507:intron | 35.0% |
| !!! | ATTTTGGTTGATATAGGGTG+AGG | + | chr5.1:62788957-62788976 | MS.gene32507:intron | 35.0% |
| !!! | GGGGTTGGTATTAATTTTCA+GGG | + | chr5.1:62787838-62787857 | MS.gene32507:intron | 35.0% |
| !!! | TTACCTCAAGAGTTTTTTCC+GGG | + | chr5.1:62788630-62788649 | MS.gene32507:intron | 35.0% |
| AACACAACTGAACTCCAAAG+AGG | - | chr5.1:62789208-62789227 | None:intergenic | 40.0% | |
| AACCAGAGCCTAAGATTACA+GGG | - | chr5.1:62786932-62786951 | None:intergenic | 40.0% | |
| AAGTGATCTCTCAACAGAAC+AGG | - | chr5.1:62788241-62788260 | None:intergenic | 40.0% | |
| AATGAGGTGTAGATTGGGTA+GGG | + | chr5.1:62787714-62787733 | MS.gene32507:intron | 40.0% | |
| ACACAACTGAACTCCAAAGA+GGG | - | chr5.1:62789207-62789226 | None:intergenic | 40.0% | |
| ACAGGTTGTACAATCTGGTT+TGG | + | chr5.1:62788682-62788701 | MS.gene32507:intron | 40.0% | |
| AGGGTAAAATTGAGAGACCA+TGG | - | chr5.1:62786913-62786932 | None:intergenic | 40.0% | |
| CAAGTCAAGCACTTTCGTTA+GGG | + | chr5.1:62786412-62786431 | MS.gene32507:CDS | 40.0% | |
| CTGTCGATAACAATCTCATC+TGG | - | chr5.1:62789237-62789256 | None:intergenic | 40.0% | |
| GAAACGGAGAAGAATATCGT+CGG | - | chr5.1:62786579-62786598 | None:intergenic | 40.0% | |
| GACTCTTTGACAGAGTTACT+CGG | - | chr5.1:62787669-62787688 | None:intergenic | 40.0% | |
| GCATGAGTACATGATCAACA+AGG | + | chr5.1:62789817-62789836 | MS.gene32507:CDS | 40.0% | |
| GCTTTCTCTTTCATCTTGTC+TGG | + | chr5.1:62788477-62788496 | MS.gene32507:intron | 40.0% | |
| GTAGAATTCCGGAAGAAGAT+AGG | + | chr5.1:62788652-62788671 | MS.gene32507:intron | 40.0% | |
| TAACAACACTGATGTAACCC+TGG | - | chr5.1:62789384-62789403 | None:intergenic | 40.0% | |
| TAATGAGGTGTAGATTGGGT+AGG | + | chr5.1:62787713-62787732 | MS.gene32507:intron | 40.0% | |
| TCTTCACCAGTAACCAAATC+AGG | - | chr5.1:62789090-62789109 | None:intergenic | 40.0% | |
| TCTTCTCCGTTTCATCGAAT+CGG | + | chr5.1:62786586-62786605 | MS.gene32507:CDS | 40.0% | |
| TGATGTTGCAGTTCAGATTG+CGG | + | chr5.1:62789621-62789640 | MS.gene32507:intron | 40.0% | |
| ! | CAGGTTGTACAATCTGGTTT+GGG | + | chr5.1:62788683-62788702 | MS.gene32507:intron | 40.0% |
| ! | GATGGTAATGAGGTGTAGAT+TGG | + | chr5.1:62787708-62787727 | MS.gene32507:intron | 40.0% |
| ! | GCAAACTTTTGCTGCAAGTT+TGG | + | chr5.1:62788573-62788592 | MS.gene32507:intron | 40.0% |
| ! | GTCAGTGTTTCTAAGAAGGA+TGG | + | chr5.1:62789180-62789199 | MS.gene32507:CDS | 40.0% |
| ! | GTTCATCTAGTTTCAGGGTT+AGG | + | chr5.1:62788455-62788474 | MS.gene32507:intron | 40.0% |
| ! | GTTCTATGTACTTGTTGAGG+GGG | + | chr5.1:62788286-62788305 | MS.gene32507:intron | 40.0% |
| ! | GTTTTACAGGGATTTGGATG+AGG | + | chr5.1:62789727-62789746 | MS.gene32507:intron | 40.0% |
| ! | TTCTATGTACTTGTTGAGGG+GGG | + | chr5.1:62788287-62788306 | MS.gene32507:intron | 40.0% |
| !! | CTCTGTCAAAGAGTCGTTTT+TGG | + | chr5.1:62787674-62787693 | MS.gene32507:intron | 40.0% |
| !! | TTTCAGGGTTTTGTGTTAGG+AGG | + | chr5.1:62787853-62787872 | MS.gene32507:intron | 40.0% |
| !!! | AGTTTTTCAAGGGGTGTTTG+TGG | + | chr5.1:62788335-62788354 | MS.gene32507:intron | 40.0% |
| !!! | GTTTTTTCCGGGTAGAATTC+CGG | + | chr5.1:62788641-62788660 | MS.gene32507:intron | 40.0% |
| !!! | TGCACTCTGGAGTTTTTCAA+GGG | + | chr5.1:62788325-62788344 | MS.gene32507:intron | 40.0% |
| !!! | TTGCACTCTGGAGTTTTTCA+AGG | + | chr5.1:62788324-62788343 | MS.gene32507:intron | 40.0% |
| AAAGAATTTGGCGGGAGATG+GGG | + | chr5.1:62787638-62787657 | MS.gene32507:intron | 45.0% | |
| AAAGTCTCACTCCAAACCAC+TGG | - | chr5.1:62787932-62787951 | None:intergenic | 45.0% | |
| ACGTAGGAACAAATGAACCC+TGG | - | chr5.1:62786517-62786536 | None:intergenic | 45.0% | |
| AGAAAGAATTTGGCGGGAGA+TGG | + | chr5.1:62787636-62787655 | MS.gene32507:intron | 45.0% | |
| AGAAGAATATCGTCGGAGGT+GGG | - | chr5.1:62786572-62786591 | None:intergenic | 45.0% | |
| ATCGGAAATCACTTGTGCTC+AGG | + | chr5.1:62786604-62786623 | MS.gene32507:CDS | 45.0% | |
| CAACCAGAGCCTAAGATTAC+AGG | - | chr5.1:62786933-62786952 | None:intergenic | 45.0% | |
| CCAAGTCAAGCACTTTCGTT+AGG | + | chr5.1:62786411-62786430 | MS.gene32507:CDS | 45.0% | |
| CTACCCGGAAAAAACTCTTG+AGG | - | chr5.1:62788636-62788655 | None:intergenic | 45.0% | |
| CTCTCAACAGAACAGGTCAA+GGG | - | chr5.1:62788234-62788253 | None:intergenic | 45.0% | |
| GAAAGAATTTGGCGGGAGAT+GGG | + | chr5.1:62787637-62787656 | MS.gene32507:intron | 45.0% | |
| GCTCAGGAAACCGATGATTT+CGG | + | chr5.1:62786620-62786639 | MS.gene32507:CDS | 45.0% | |
| GTTAGGAGGATGTGGTACTT+TGG | + | chr5.1:62787867-62787886 | MS.gene32507:intron | 45.0% | |
| GTTTCGTTCGCCTTCCAATT+TGG | + | chr5.1:62787965-62787984 | MS.gene32507:intron | 45.0% | |
| TACCCTGTAATCTTAGGCTC+TGG | + | chr5.1:62786927-62786946 | MS.gene32507:intron | 45.0% | |
| TATGCTCAGAATCAGGCACA+AGG | - | chr5.1:62788825-62788844 | None:intergenic | 45.0% | |
| TCTCTCAACAGAACAGGTCA+AGG | - | chr5.1:62788235-62788254 | None:intergenic | 45.0% | |
| TCTTCTTCCGGAATTCTACC+CGG | - | chr5.1:62788651-62788670 | None:intergenic | 45.0% | |
| TGAAAATCTGGCCCGTCATA+AGG | - | chr5.1:62789300-62789319 | None:intergenic | 45.0% | |
| TGAGGTTCACATGCCTGATT+TGG | + | chr5.1:62789074-62789093 | MS.gene32507:CDS | 45.0% | |
| TTATCTTTCGTGAGAGGGGT+TGG | + | chr5.1:62787823-62787842 | MS.gene32507:intron | 45.0% | |
| ! | ACTTACAGCGCCGAAATCAT+CGG | - | chr5.1:62786633-62786652 | None:intergenic | 45.0% |
| ! | ATTGGGTTGTGTTGCTAACC+TGG | + | chr5.1:62789559-62789578 | MS.gene32507:intron | 45.0% |
| ! | CAGCTAGTTAGTCTCAGGTT+TGG | + | chr5.1:62788602-62788621 | MS.gene32507:intron | 45.0% |
| ! | CTGTAATCTTAGGCTCTGGT+TGG | + | chr5.1:62786931-62786950 | MS.gene32507:intron | 45.0% |
| ! | TGCAGTTCAGATTGCGGTTT+TGG | + | chr5.1:62789627-62789646 | MS.gene32507:intron | 45.0% |
| ! | TGTAGCAGCTAGTTAGTCTC+AGG | + | chr5.1:62788597-62788616 | MS.gene32507:intron | 45.0% |
| !! | CACATGCCTGATTTGGTTAC+TGG | + | chr5.1:62789081-62789100 | MS.gene32507:CDS | 45.0% |
| !! | CCTAACGAAAGTGCTTGACT+TGG | - | chr5.1:62786414-62786433 | None:intergenic | 45.0% |
| !! | GGTTTTGTGTTAGGAGGATG+TGG | + | chr5.1:62787859-62787878 | MS.gene32507:intron | 45.0% |
| !! | GTTGTACAATCTGGTTTGGG+TGG | + | chr5.1:62788686-62788705 | MS.gene32507:intron | 45.0% |
| !! | GTTTTGAGCTTGGCATGGTT+AGG | + | chr5.1:62788716-62788735 | MS.gene32507:intron | 45.0% |
| !! | TCAAGTTTCTATTGGTGGCG+TGG | + | chr5.1:62788547-62788566 | MS.gene32507:intron | 45.0% |
| !! | TGAACCCTGGTATCGATTGA+CGG | - | chr5.1:62786504-62786523 | None:intergenic | 45.0% |
| !!! | GCACTCTGGAGTTTTTCAAG+GGG | + | chr5.1:62788326-62788345 | MS.gene32507:intron | 45.0% |
| !!! | TGGTGTGTCAGTTTTGAGCT+TGG | + | chr5.1:62788706-62788725 | MS.gene32507:intron | 45.0% |
| !!! | TGTCAGTTTTGAGCTTGGCA+TGG | + | chr5.1:62788711-62788730 | MS.gene32507:intron | 45.0% |
| !!! | TTTTTGGTCTTGAGCACCGA+TGG | + | chr5.1:62787690-62787709 | MS.gene32507:intron | 45.0% |
| !! | AAAAAAAAAAAAAATTGAAA+AGG | - | chr5.1:62788861-62788880 | None:intergenic | 5.0% |
| !!! | TTTAATTTCATTTATATATA+GGG | + | chr5.1:62786712-62786731 | MS.gene32507:intron | 5.0% |
| !!! | TTTTAATTTCATTTATATAT+AGG | + | chr5.1:62786711-62786730 | MS.gene32507:intron | 5.0% |
| AAGAATTTGGCGGGAGATGG+GGG | + | chr5.1:62787639-62787658 | MS.gene32507:intron | 50.0% | |
| ACGGAGAAGAATATCGTCGG+AGG | - | chr5.1:62786576-62786595 | None:intergenic | 50.0% | |
| GAGAAGAATATCGTCGGAGG+TGG | - | chr5.1:62786573-62786592 | None:intergenic | 50.0% | |
| GGGTAGGGCTGTGGATTTAT+GGG | + | chr5.1:62787729-62787748 | MS.gene32507:intron | 50.0% | |
| TAAGAAGGATGGGCCCTCTT+TGG | + | chr5.1:62789191-62789210 | MS.gene32507:CDS | 50.0% | |
| TCTCTACAACCAAGCAGTCC+AGG | - | chr5.1:62789580-62789599 | None:intergenic | 50.0% | |
| TGGGTAGGGCTGTGGATTTA+TGG | + | chr5.1:62787728-62787747 | MS.gene32507:intron | 50.0% | |
| TGTTGCTAACCTGGACTGCT+TGG | + | chr5.1:62789568-62789587 | MS.gene32507:intron | 50.0% | |
| TTTCTCCTGCTGCAGTAGTG+AGG | + | chr5.1:62788403-62788422 | MS.gene32507:intron | 50.0% | |
| ! | TATGTACTTGTTGAGGGGGG+TGG | + | chr5.1:62788290-62788309 | MS.gene32507:intron | 50.0% |
| !! | CTTGAGCACCGATGGTAATG+AGG | + | chr5.1:62787698-62787717 | MS.gene32507:intron | 50.0% |
| !! | GTGTTGCTTCAGTTGCACTC+TGG | + | chr5.1:62788312-62788331 | MS.gene32507:intron | 50.0% |
| GAGGTCTGAGTCTGACTGCT+TGG | + | chr5.1:62788422-62788441 | MS.gene32507:intron | 55.0% | |
| GTGTAGATTGGGTAGGGCTG+TGG | + | chr5.1:62787720-62787739 | MS.gene32507:intron | 55.0% | |
| TCAGACCTCACTACTGCAGC+AGG | - | chr5.1:62788411-62788430 | None:intergenic | 55.0% | |
| !! | ACCCTGGTATCGATTGACGG+CGG | - | chr5.1:62786501-62786520 | None:intergenic | 55.0% |
| !! | GTTTCTATTGGTGGCGTGGC+AGG | + | chr5.1:62788551-62788570 | MS.gene32507:intron | 55.0% |
| ATTGACGGCGGCGGAAAGCA+CGG | - | chr5.1:62786489-62786508 | None:intergenic | 60.0% | |
| GCCGCCGTCAATCGATACCA+GGG | + | chr5.1:62786497-62786516 | MS.gene32507:CDS | 60.0% | |
| !! | CTGGTATCGATTGACGGCGG+CGG | - | chr5.1:62786498-62786517 | None:intergenic | 60.0% |
| CGCCGCCGTCAATCGATACC+AGG | + | chr5.1:62786496-62786515 | MS.gene32507:CDS | 65.0% | |
| ! | GAAAGCACGGCGCGATGACC+CGG | - | chr5.1:62786476-62786495 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 62786386 | 62789895 | 62786386 | ID=MS.gene32507 |
| chr5.1 | mRNA | 62786386 | 62789895 | 62786386 | ID=MS.gene32507.t1;Parent=MS.gene32507 |
| chr5.1 | exon | 62786386 | 62786646 | 62786386 | ID=MS.gene32507.t1.exon1;Parent=MS.gene32507.t1 |
| chr5.1 | CDS | 62786386 | 62786646 | 62786386 | ID=cds.MS.gene32507.t1;Parent=MS.gene32507.t1 |
| chr5.1 | exon | 62788973 | 62789319 | 62788973 | ID=MS.gene32507.t1.exon2;Parent=MS.gene32507.t1 |
| chr5.1 | CDS | 62788973 | 62789319 | 62788973 | ID=cds.MS.gene32507.t1;Parent=MS.gene32507.t1 |
| chr5.1 | exon | 62789736 | 62789895 | 62789736 | ID=MS.gene32507.t1.exon3;Parent=MS.gene32507.t1 |
| chr5.1 | CDS | 62789736 | 62789895 | 62789736 | ID=cds.MS.gene32507.t1;Parent=MS.gene32507.t1 |
| Gene Sequence |
| Protein sequence |
