Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32757.t1 | XP_003603218.1 | 94.3 | 894 | 47 | 2 | 1 | 892 | 1 | 892 | 0.00E+00 | 1572.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32757.t1 | B9DFX7 | 74.5 | 811 | 203 | 3 | 84 | 892 | 75 | 883 | 0.0e+00 | 1157.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32757.t1 | G7J8G2 | 94.3 | 894 | 47 | 2 | 1 | 892 | 1 | 892 | 0.0e+00 | 1572.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05601 | MS.gene32757 | 0.823253 | 1.53E-53 | -1.69E-46 |
MS.gene056878 | MS.gene32757 | 0.80016 | 1.64E-48 | -1.69E-46 |
MS.gene059674 | MS.gene32757 | 0.807322 | 5.35E-50 | -1.69E-46 |
MS.gene060372 | MS.gene32757 | 0.80377 | 2.98E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene072795 | MS.gene32757 | PPI |
MS.gene060325 | MS.gene32757 | PPI |
MS.gene000345 | MS.gene32757 | PPI |
MS.gene015565 | MS.gene32757 | PPI |
MS.gene028274 | MS.gene32757 | PPI |
MS.gene32757 | MS.gene057572 | PPI |
MS.gene073463 | MS.gene32757 | PPI |
MS.gene32757 | MS.gene58690 | PPI |
MS.gene35184 | MS.gene32757 | PPI |
MS.gene45363 | MS.gene32757 | PPI |
MS.gene32757 | MS.gene06708 | PPI |
MS.gene023194 | MS.gene32757 | PPI |
MS.gene057573 | MS.gene32757 | PPI |
MS.gene019298 | MS.gene32757 | PPI |
MS.gene90176 | MS.gene32757 | PPI |
MS.gene49524 | MS.gene32757 | PPI |
MS.gene57466 | MS.gene32757 | PPI |
MS.gene06927 | MS.gene32757 | PPI |
MS.gene36515 | MS.gene32757 | PPI |
MS.gene45361 | MS.gene32757 | PPI |
MS.gene54357 | MS.gene32757 | PPI |
MS.gene000697 | MS.gene32757 | PPI |
MS.gene021768 | MS.gene32757 | PPI |
MS.gene021767 | MS.gene32757 | PPI |
MS.gene90280 | MS.gene32757 | PPI |
MS.gene49523 | MS.gene32757 | PPI |
MS.gene32757 | MS.gene013592 | PPI |
MS.gene32757 | MS.gene97779 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32757.t1 | MTR_3g105190 | 96.644 | 894 | 26 | 2 | 1 | 892 | 1 | 892 | 0.0 | 1730 |
MS.gene32757.t1 | MTR_3g105190 | 96.364 | 770 | 24 | 2 | 1 | 768 | 1 | 768 | 0.0 | 1489 |
MS.gene32757.t1 | MTR_4g094232 | 43.373 | 830 | 403 | 16 | 78 | 884 | 126 | 911 | 0.0 | 618 |
MS.gene32757.t1 | MTR_4g094695 | 36.338 | 710 | 388 | 17 | 210 | 885 | 302 | 981 | 1.60e-118 | 384 |
MS.gene32757.t1 | MTR_2g035840 | 34.857 | 700 | 395 | 15 | 216 | 885 | 312 | 980 | 1.71e-112 | 369 |
MS.gene32757.t1 | MTR_8g079250 | 35.812 | 659 | 380 | 14 | 241 | 886 | 353 | 981 | 3.03e-112 | 368 |
MS.gene32757.t1 | MTR_5g010420 | 35.659 | 645 | 375 | 12 | 251 | 885 | 357 | 971 | 1.46e-111 | 366 |
MS.gene32757.t1 | MTR_8g012390 | 36.947 | 655 | 356 | 14 | 251 | 885 | 334 | 951 | 1.89e-107 | 354 |
MS.gene32757.t1 | MTR_8g012390 | 34.216 | 529 | 293 | 12 | 251 | 759 | 334 | 827 | 2.66e-74 | 261 |
MS.gene32757.t1 | MTR_8g079250 | 33.083 | 532 | 315 | 13 | 241 | 759 | 353 | 856 | 9.37e-71 | 251 |
MS.gene32757.t1 | MTR_4g127580 | 31.579 | 532 | 316 | 11 | 354 | 879 | 208 | 697 | 1.26e-65 | 239 |
MS.gene32757.t1 | MTR_2g036380 | 32.535 | 501 | 287 | 15 | 355 | 844 | 21 | 481 | 6.88e-64 | 228 |
MS.gene32757.t1 | MTR_2g036380 | 32.535 | 501 | 287 | 15 | 355 | 844 | 52 | 512 | 1.45e-63 | 227 |
MS.gene32757.t1 | MTR_2g036380 | 31.716 | 536 | 306 | 17 | 355 | 879 | 114 | 600 | 1.62e-63 | 228 |
MS.gene32757.t1 | MTR_2g036380 | 32.335 | 501 | 288 | 15 | 355 | 844 | 204 | 664 | 8.72e-63 | 228 |
MS.gene32757.t1 | MTR_8g079250 | 39.222 | 334 | 185 | 7 | 241 | 569 | 353 | 673 | 6.67e-58 | 212 |
MS.gene32757.t1 | MTR_4g094985 | 27.218 | 665 | 413 | 14 | 197 | 835 | 121 | 740 | 2.58e-46 | 179 |
MS.gene32757.t1 | MTR_6g011310 | 24.182 | 550 | 325 | 19 | 363 | 854 | 155 | 670 | 9.66e-21 | 98.6 |
MS.gene32757.t1 | MTR_2g449840 | 22.822 | 574 | 350 | 17 | 363 | 875 | 154 | 695 | 9.84e-21 | 98.6 |
MS.gene32757.t1 | MTR_2g036650 | 23.951 | 572 | 347 | 20 | 363 | 875 | 158 | 700 | 3.61e-19 | 93.6 |
MS.gene32757.t1 | MTR_4g127710 | 23.958 | 576 | 341 | 21 | 363 | 875 | 156 | 697 | 5.57e-19 | 93.2 |
MS.gene32757.t1 | MTR_4g127710 | 23.958 | 576 | 341 | 21 | 363 | 875 | 156 | 697 | 7.75e-19 | 92.4 |
MS.gene32757.t1 | MTR_3g108800 | 23.196 | 582 | 338 | 18 | 363 | 875 | 152 | 693 | 5.96e-18 | 89.7 |
MS.gene32757.t1 | MTR_3g108800 | 23.196 | 582 | 338 | 18 | 363 | 875 | 153 | 694 | 7.07e-18 | 89.4 |
MS.gene32757.t1 | MTR_2g104860 | 22.183 | 568 | 361 | 15 | 363 | 875 | 151 | 692 | 1.41e-17 | 88.6 |
MS.gene32757.t1 | MTR_1g009760 | 21.980 | 596 | 362 | 17 | 343 | 875 | 142 | 697 | 4.30e-17 | 86.7 |
MS.gene32757.t1 | MTR_1g009760 | 22.204 | 599 | 357 | 18 | 343 | 875 | 139 | 694 | 7.96e-17 | 85.9 |
MS.gene32757.t1 | MTR_8g446010 | 28.311 | 219 | 150 | 4 | 359 | 572 | 206 | 422 | 1.08e-12 | 72.8 |
MS.gene32757.t1 | MTR_8g045070 | 28.311 | 219 | 150 | 4 | 359 | 572 | 206 | 422 | 1.11e-12 | 72.8 |
MS.gene32757.t1 | MTR_8g090125 | 30.396 | 227 | 135 | 8 | 359 | 572 | 206 | 422 | 1.99e-11 | 68.6 |
MS.gene32757.t1 | MTR_8g027160 | 23.881 | 201 | 110 | 5 | 689 | 851 | 619 | 814 | 4.34e-11 | 67.4 |
MS.gene32757.t1 | MTR_8g027160 | 23.881 | 201 | 110 | 5 | 689 | 851 | 619 | 814 | 5.71e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32757.t1 | AT5G21930 | 73.522 | 846 | 217 | 4 | 49 | 892 | 43 | 883 | 0.0 | 1262 |
MS.gene32757.t1 | AT5G21930 | 73.522 | 846 | 217 | 4 | 49 | 892 | 43 | 883 | 0.0 | 1262 |
MS.gene32757.t1 | AT5G21930 | 71.277 | 846 | 213 | 5 | 49 | 892 | 43 | 860 | 0.0 | 1210 |
MS.gene32757.t1 | AT5G21930 | 72.715 | 766 | 203 | 3 | 49 | 812 | 43 | 804 | 0.0 | 1130 |
MS.gene32757.t1 | AT4G33520 | 43.210 | 810 | 401 | 17 | 87 | 880 | 150 | 916 | 0.0 | 620 |
MS.gene32757.t1 | AT4G33520 | 43.210 | 810 | 401 | 17 | 87 | 880 | 150 | 916 | 0.0 | 619 |
MS.gene32757.t1 | AT1G63440 | 37.152 | 646 | 365 | 12 | 251 | 885 | 364 | 979 | 6.51e-117 | 380 |
MS.gene32757.t1 | AT5G44790 | 35.029 | 688 | 393 | 14 | 222 | 885 | 333 | 990 | 2.32e-106 | 352 |
MS.gene32757.t1 | AT4G30110 | 31.034 | 609 | 349 | 14 | 290 | 889 | 157 | 703 | 1.80e-69 | 249 |
MS.gene32757.t1 | AT4G30110 | 31.034 | 609 | 349 | 14 | 290 | 889 | 157 | 703 | 1.80e-69 | 249 |
MS.gene32757.t1 | AT2G19110 | 32.532 | 541 | 300 | 14 | 366 | 887 | 226 | 720 | 4.23e-61 | 226 |
MS.gene32757.t1 | AT2G19110 | 32.532 | 541 | 300 | 14 | 366 | 887 | 226 | 720 | 4.23e-61 | 226 |
MS.gene32757.t1 | AT2G19110 | 32.532 | 541 | 300 | 14 | 366 | 887 | 226 | 720 | 4.23e-61 | 226 |
MS.gene32757.t1 | AT4G37270 | 27.628 | 666 | 406 | 15 | 197 | 834 | 128 | 745 | 9.32e-48 | 183 |
MS.gene32757.t1 | AT4G30120 | 30.233 | 430 | 241 | 13 | 290 | 711 | 4 | 382 | 3.58e-42 | 159 |
MS.gene32757.t1 | AT4G30120 | 30.233 | 430 | 241 | 13 | 290 | 711 | 163 | 541 | 6.72e-41 | 159 |
MS.gene32757.t1 | AT1G80660 | 23.064 | 581 | 340 | 17 | 363 | 875 | 156 | 697 | 1.05e-21 | 102 |
MS.gene32757.t1 | AT1G80660 | 23.064 | 581 | 340 | 17 | 363 | 875 | 156 | 697 | 1.16e-21 | 101 |
MS.gene32757.t1 | AT1G80660 | 23.050 | 577 | 345 | 17 | 363 | 875 | 156 | 697 | 1.16e-21 | 101 |
MS.gene32757.t1 | AT1G80660 | 23.064 | 581 | 340 | 17 | 363 | 875 | 27 | 568 | 1.41e-21 | 101 |
MS.gene32757.t1 | AT1G17260 | 23.339 | 587 | 349 | 21 | 363 | 886 | 159 | 707 | 2.23e-21 | 100 |
MS.gene32757.t1 | AT2G18960 | 23.480 | 592 | 343 | 17 | 363 | 886 | 151 | 700 | 8.66e-21 | 99.0 |
MS.gene32757.t1 | AT5G57350 | 24.150 | 588 | 344 | 18 | 363 | 886 | 152 | 701 | 8.89e-21 | 99.0 |
MS.gene32757.t1 | AT5G57350 | 24.150 | 588 | 344 | 18 | 363 | 886 | 152 | 701 | 8.89e-21 | 99.0 |
MS.gene32757.t1 | AT5G57350 | 24.150 | 588 | 344 | 18 | 363 | 886 | 152 | 701 | 8.89e-21 | 99.0 |
MS.gene32757.t1 | AT2G18960 | 23.480 | 592 | 343 | 17 | 363 | 886 | 87 | 636 | 1.42e-20 | 98.2 |
MS.gene32757.t1 | AT2G18960 | 23.480 | 592 | 343 | 17 | 363 | 886 | 87 | 636 | 1.42e-20 | 98.2 |
MS.gene32757.t1 | AT4G30190 | 23.519 | 591 | 344 | 18 | 363 | 886 | 151 | 700 | 7.64e-20 | 95.9 |
MS.gene32757.t1 | AT3G47950 | 24.231 | 553 | 326 | 19 | 363 | 854 | 159 | 679 | 1.94e-19 | 94.7 |
MS.gene32757.t1 | AT3G47950 | 24.231 | 553 | 326 | 19 | 363 | 854 | 159 | 679 | 1.94e-19 | 94.7 |
MS.gene32757.t1 | AT3G42640 | 22.242 | 571 | 357 | 13 | 363 | 875 | 154 | 695 | 1.14e-18 | 92.0 |
MS.gene32757.t1 | AT5G62670 | 24.138 | 551 | 329 | 19 | 363 | 854 | 155 | 675 | 3.53e-18 | 90.5 |
MS.gene32757.t1 | AT4G11730 | 24.752 | 505 | 296 | 16 | 363 | 855 | 152 | 584 | 2.67e-17 | 87.4 |
MS.gene32757.t1 | AT1G27770 | 23.006 | 539 | 346 | 18 | 346 | 841 | 242 | 754 | 1.52e-11 | 68.9 |
MS.gene32757.t1 | AT3G60330 | 26.606 | 218 | 134 | 4 | 354 | 566 | 145 | 341 | 9.98e-11 | 66.2 |
MS.gene32757.t1 | AT3G60330 | 26.606 | 218 | 134 | 4 | 354 | 566 | 145 | 341 | 9.98e-11 | 66.2 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATTTCAGGATGGTCCTTTA+AGG | 0.160048 | 3.1:+83030478 | MS.gene32757:intron |
GCTATGACACCTTCACTTTC+AGG | 0.161793 | 3.1:+83036431 | MS.gene32757:CDS |
CAGCAGCAACATTTGCATTT+TGG | 0.168596 | 3.1:+83031263 | MS.gene32757:CDS |
GCCATTGGCTCTATTCATTA+TGG | 0.183910 | 3.1:+83033865 | MS.gene32757:CDS |
CTTCTTGGTTTCGTGCTTCT+AGG | 0.187114 | 3.1:+83029010 | MS.gene32757:CDS |
CTACTGCCCAAGATAAATTT+TGG | 0.191587 | 3.1:-83036349 | None:intergenic |
CCCACGAGAGAGTTCATATT+TGG | 0.230571 | 3.1:-83028569 | None:intergenic |
TGCAGCATCCATCATACTTC+TGG | 0.259093 | 3.1:+83036067 | MS.gene32757:CDS |
TTTAGCTTTGGGTGCTCTAT+TGG | 0.259169 | 3.1:+83028096 | MS.gene32757:CDS |
AAAACTCTCTGTAGATGTTT+TGG | 0.270027 | 3.1:+83032206 | MS.gene32757:CDS |
CAGATAGTTGAACCAGGTTT+TGG | 0.273298 | 3.1:+83034006 | MS.gene32757:CDS |
TCCGATTCTGATTCTGATTC+CGG | 0.274714 | 3.1:-83027229 | None:intergenic |
GTTGCAGATTTACTCTTTGA+TGG | 0.284654 | 3.1:+83028521 | MS.gene32757:intron |
AGCATGCAGGTCATGCTTCT+TGG | 0.291940 | 3.1:+83028995 | MS.gene32757:intron |
TTAGCTTTGGGTGCTCTATT+GGG | 0.297611 | 3.1:+83028097 | MS.gene32757:CDS |
GTGTCATAGCAAAGTCAAAT+TGG | 0.302041 | 3.1:-83036418 | None:intergenic |
TTAATAATAGCCTTTGCTAT+TGG | 0.303962 | 3.1:-83033940 | None:intergenic |
ATGAACTCTCTCGTGGGATT+TGG | 0.310553 | 3.1:+83028575 | MS.gene32757:CDS |
TCTGAAAGGCTCACATCTAT+AGG | 0.316788 | 3.1:-83029943 | None:intergenic |
GAAGAAGATTCAATCCTTAA+AGG | 0.318105 | 3.1:-83030492 | None:intergenic |
GTTTCTTGTCCTTGTGCATT+GGG | 0.323766 | 3.1:+83032715 | MS.gene32757:CDS |
AAAGCAGAGGATCTCCTTCC+GGG | 0.328481 | 3.1:-83032176 | None:intergenic |
TTTCAGCAGGAACTATAAAC+TGG | 0.333469 | 3.1:+83030322 | MS.gene32757:CDS |
AAGAGGAGAGAATCGGGTTT+AGG | 0.335699 | 3.1:+83027499 | MS.gene32757:CDS |
TCGCGGTTGGGTCTTTAGAA+TGG | 0.338498 | 3.1:+83034058 | MS.gene32757:CDS |
ATTGAAACGGTCCTCTTATC+AGG | 0.343160 | 3.1:+83035069 | MS.gene32757:CDS |
GGAACCTTGGCAGAAATAGA+TGG | 0.346131 | 3.1:+83034027 | MS.gene32757:CDS |
AGAAGAAAAGGCTAGGATTC+AGG | 0.351124 | 3.1:+83029042 | MS.gene32757:CDS |
AAGCAGAACTGGAGAGTCTT+TGG | 0.354438 | 3.1:-83027281 | None:intergenic |
CTTTGGCTGCAGCTGATGTT+GGG | 0.359800 | 3.1:+83036003 | MS.gene32757:CDS |
AAGTTTACCAAAATTTATCT+TGG | 0.373570 | 3.1:+83036342 | MS.gene32757:CDS |
TGCATCATTCTTTGATGAAC+CGG | 0.377393 | 3.1:+83028773 | MS.gene32757:CDS |
ACTAACCATGCGTACAATCT+TGG | 0.380751 | 3.1:-83030538 | None:intergenic |
TCTTTGGCTGCAGCTGATGT+TGG | 0.386009 | 3.1:+83036002 | MS.gene32757:CDS |
CTAAGCACACTGTCAGTAGA+TGG | 0.388281 | 3.1:-83029838 | None:intergenic |
GTGGTTGCGACGGCGTTTAG+TGG | 0.392372 | 3.1:-83027140 | None:intergenic |
GATAAATGATGCACCCTCTT+TGG | 0.396231 | 3.1:+83035986 | MS.gene32757:CDS |
CGCGGTTGGGTCTTTAGAAT+GGG | 0.397096 | 3.1:+83034059 | MS.gene32757:CDS |
TGTCATAGCAAAGTCAAATT+GGG | 0.397630 | 3.1:-83036417 | None:intergenic |
AAACCAGTTGTTTCTGCCAT+TGG | 0.414420 | 3.1:+83033850 | MS.gene32757:CDS |
CTGAAAGGCTCACATCTATA+GGG | 0.415640 | 3.1:-83029942 | None:intergenic |
GCGTAATTGAAACGGAAGTT+AGG | 0.418844 | 3.1:-83027076 | None:intergenic |
TGTTTCTTGTCCTTGTGCAT+TGG | 0.418994 | 3.1:+83032714 | MS.gene32757:CDS |
CGTGAAGGAGAAGGCATCAT+TGG | 0.421548 | 3.1:+83034204 | MS.gene32757:CDS |
TGTGAAAGGTGGTTTAGCTT+TGG | 0.424829 | 3.1:+83028084 | MS.gene32757:CDS |
CCGGTGACGTCAAGCAGAAC+TGG | 0.424957 | 3.1:-83027292 | None:intergenic |
TTGCGGAGAATGTGAGGAAG+TGG | 0.426058 | 3.1:+83027524 | MS.gene32757:CDS |
CCGACGAAGAGGAGAGAATC+GGG | 0.428018 | 3.1:+83027493 | MS.gene32757:CDS |
ATTTCATCTCTAAAAGCTGC+TGG | 0.429040 | 3.1:+83035189 | MS.gene32757:CDS |
TGTTGCATTTGCTTGGACTT+TGG | 0.431781 | 3.1:+83027597 | MS.gene32757:CDS |
GAAACAAACTAACCTCTTCC+TGG | 0.431870 | 3.1:-83028121 | None:intergenic |
TTCACGCACAATGTCAGATA+TGG | 0.434210 | 3.1:-83034235 | None:intergenic |
GGACAGGGAAGGGTCATTGC+AGG | 0.435079 | 3.1:+83030228 | MS.gene32757:intron |
CAACAATTGCAGAGGCAGTT+GGG | 0.436580 | 3.1:+83035112 | MS.gene32757:CDS |
GGTGCTGAAGGTGTTTGATA+TGG | 0.441409 | 3.1:-83027194 | None:intergenic |
GATGGGCGTTTGGTCGCGGT+TGG | 0.444909 | 3.1:+83034045 | MS.gene32757:CDS |
GTGAAAGGTGGTTTAGCTTT+GGG | 0.445483 | 3.1:+83028085 | MS.gene32757:CDS |
TCGATCGTCGGAGGAGAGAA+TGG | 0.447449 | 3.1:-83027350 | None:intergenic |
AAAAGCAGAGGATCTCCTTC+CGG | 0.450027 | 3.1:-83032177 | None:intergenic |
TAGTTCCTGCTGAAACTGTA+AGG | 0.450135 | 3.1:-83030314 | None:intergenic |
GGCAGAAATAGATGGGCGTT+TGG | 0.450316 | 3.1:+83034035 | MS.gene32757:CDS |
GACTCGGTGTTGGTGTTGCC+TGG | 0.452378 | 3.1:+83029910 | MS.gene32757:CDS |
GATGCATCCCATGCCAGCTC+GGG | 0.454419 | 3.1:-83028756 | None:intergenic |
AATCATCGCAGGAGGACTAA+TGG | 0.456524 | 3.1:+83036640 | MS.gene32757:intron |
TCTTCAGATTGCTGCGGCAG+TGG | 0.457810 | 3.1:+83033900 | MS.gene32757:CDS |
CTCGGAGATTGACGGAATGC+GGG | 0.458590 | 3.1:+83027467 | MS.gene32757:CDS |
TACTTAACCCCGAGCTGGCA+TGG | 0.460970 | 3.1:+83028748 | MS.gene32757:CDS |
TATTGCAAGGCTCAAGAAGA+AGG | 0.461185 | 3.1:+83035044 | MS.gene32757:intron |
GCACCCGCCGCACATCATTC+CGG | 0.470165 | 3.1:-83027311 | None:intergenic |
GTCATTATGCTAAATACAAA+TGG | 0.470978 | 3.1:-83031235 | None:intergenic |
AGGCTTGCAGATTCAATAGC+AGG | 0.473144 | 3.1:+83031211 | MS.gene32757:CDS |
TCTGCCAAGGTTCCAAAACC+TGG | 0.473199 | 3.1:-83034018 | None:intergenic |
AGGACGTTCTCTAGAAGAAA+AGG | 0.474060 | 3.1:+83029030 | MS.gene32757:CDS |
GAGCCAATGGCAGAAACAAC+TGG | 0.474215 | 3.1:-83033853 | None:intergenic |
GCAACAATTGCAGAGGCAGT+TGG | 0.475108 | 3.1:+83035111 | MS.gene32757:CDS |
CGGTCCTCTTATCAGGAGAC+AGG | 0.475376 | 3.1:+83035076 | MS.gene32757:CDS |
TCCTTCTCTAAGGTAGGTGA+TGG | 0.476768 | 3.1:+83035963 | MS.gene32757:intron |
CGGTCTCCGACCTCAGGAAA+GGG | 0.477811 | 3.1:+83036713 | MS.gene32757:CDS |
AGGATTGAATCTTCTTCGAC+TGG | 0.478815 | 3.1:+83030498 | MS.gene32757:CDS |
TTGCCATCGTTGCCTGTGCT+AGG | 0.479200 | 3.1:-83036319 | None:intergenic |
AGTTTACCAAAATTTATCTT+GGG | 0.479601 | 3.1:+83036343 | MS.gene32757:CDS |
AATAGATGGGCGTTTGGTCG+CGG | 0.480129 | 3.1:+83034041 | MS.gene32757:CDS |
ATTGCCGTTCCCATTGCTGC+TGG | 0.480282 | 3.1:+83036383 | MS.gene32757:CDS |
GTGGACGAATCCATGCTTAC+AGG | 0.481024 | 3.1:+83030261 | MS.gene32757:CDS |
CCAGTTCTGCTTGACGTCAC+CGG | 0.481450 | 3.1:+83027292 | MS.gene32757:CDS |
GTAACCGTGTTGCATTTGCT+TGG | 0.485798 | 3.1:+83027590 | MS.gene32757:CDS |
ATCCTAGTTGGCACCTCACT+TGG | 0.485823 | 3.1:+83032757 | MS.gene32757:CDS |
TGCGGCGGTGGTGGTTGCGA+CGG | 0.487749 | 3.1:-83027150 | None:intergenic |
CTTCCCTGTCTCCTGATAAG+AGG | 0.489164 | 3.1:-83035080 | None:intergenic |
GCAGCATCCATCATACTTCT+GGG | 0.489187 | 3.1:+83036068 | MS.gene32757:CDS |
TGATTCCGGTGAACGAATCT+CGG | 0.490897 | 3.1:-83027215 | None:intergenic |
CTTCATCGGTCTCCGACCTC+AGG | 0.491021 | 3.1:+83036707 | MS.gene32757:CDS |
TTTGTTGCCCAGAAGTATGA+TGG | 0.492353 | 3.1:-83036075 | None:intergenic |
TCCGACGAAGAGGAGAGAAT+CGG | 0.492472 | 3.1:+83027492 | MS.gene32757:CDS |
AAGTAACACGCCAGCAGCAA+TGG | 0.492605 | 3.1:-83036393 | None:intergenic |
GCTCAATGATATTGCGGGCC+CGG | 0.495502 | 3.1:+83032158 | MS.gene32757:CDS |
AGTAACACGCCAGCAGCAAT+GGG | 0.496038 | 3.1:-83036392 | None:intergenic |
AATCTTGGATATCATTGTGT+TGG | 0.500914 | 3.1:-83030523 | None:intergenic |
AGGGGATGTGCTAGAACGCT+TGG | 0.503436 | 3.1:+83033041 | MS.gene32757:CDS |
TCAAGATTCATCAAATCAGA+TGG | 0.503703 | 3.1:-83034111 | None:intergenic |
ATGGGCGTTTGGTCGCGGTT+GGG | 0.503897 | 3.1:+83034046 | MS.gene32757:CDS |
AATGGCTATGAGCTCCATCT+TGG | 0.507043 | 3.1:+83036658 | MS.gene32757:CDS |
TAGACTTGCTCGGAGATTGA+CGG | 0.508023 | 3.1:+83027459 | MS.gene32757:CDS |
TGATGCATCCCATGCCAGCT+CGG | 0.510256 | 3.1:-83028757 | None:intergenic |
CTTCATAATTCATATGTGAA+AGG | 0.511540 | 3.1:+83028070 | MS.gene32757:CDS |
TTCTAGTATTGAAACGCTCA+TGG | 0.512198 | 3.1:-83034083 | None:intergenic |
GGCTATGAGCTCCATCTTGG+TGG | 0.516698 | 3.1:+83036661 | MS.gene32757:CDS |
GATTGAATGCGTAATTGAAA+CGG | 0.517782 | 3.1:-83027084 | None:intergenic |
TTGGTCCTTCCACTCACAAA+AGG | 0.520959 | 3.1:+83033982 | MS.gene32757:CDS |
GTAGGGATTCACATTGCTCA+TGG | 0.528624 | 3.1:+83027664 | MS.gene32757:CDS |
GAAGGCCTTACAGTTTCAGC+AGG | 0.532555 | 3.1:+83030309 | MS.gene32757:CDS |
TAGGAGTTGCGGAGAATGTG+AGG | 0.535748 | 3.1:+83027518 | MS.gene32757:CDS |
GCTCTATTGGGACCAGGAAG+AGG | 0.536437 | 3.1:+83028109 | MS.gene32757:CDS |
TTATGAAGAAATTCCCAAAA+CGG | 0.536893 | 3.1:-83028055 | None:intergenic |
GAATCTGCAAGCCTTTGTAC+AGG | 0.537591 | 3.1:-83031202 | None:intergenic |
TACTGAGTCAACTCGATCGT+CGG | 0.538077 | 3.1:-83027362 | None:intergenic |
ACCGGAATCAGAATCAGAAT+CGG | 0.539306 | 3.1:+83027228 | MS.gene32757:CDS |
TCTGGGCAACAAAATTTCAC+AGG | 0.541788 | 3.1:+83036085 | MS.gene32757:CDS |
TAAATCTGAGTCATTAGAGT+TGG | 0.542920 | 3.1:+83033963 | MS.gene32757:CDS |
CAGCACCGAGATTCGTTCAC+CGG | 0.544203 | 3.1:+83027210 | MS.gene32757:CDS |
AATGATATTGCGGGCCCGGA+AGG | 0.544859 | 3.1:+83032162 | MS.gene32757:CDS |
ACTTAACCCCGAGCTGGCAT+GGG | 0.545346 | 3.1:+83028749 | MS.gene32757:CDS |
ATTGCAAGGCTCAAGAAGAA+GGG | 0.545552 | 3.1:+83035045 | MS.gene32757:intron |
CATAATTCATATGTGAAAGG+TGG | 0.545937 | 3.1:+83028073 | MS.gene32757:CDS |
TGAACGAATCTCGGTGCTGA+AGG | 0.546556 | 3.1:-83027206 | None:intergenic |
CTTGTCATTACATCATCAGA+AGG | 0.547164 | 3.1:+83029811 | MS.gene32757:CDS |
ACCACCGCCGCAAAATTCTC+CGG | 0.547684 | 3.1:+83027161 | MS.gene32757:CDS |
ATATCATTGAGCAAAACATC+AGG | 0.548267 | 3.1:-83032147 | None:intergenic |
GAACCTTGGCAGAAATAGAT+GGG | 0.550521 | 3.1:+83034028 | MS.gene32757:CDS |
TACCAAGTGAGGTGCCAACT+AGG | 0.550839 | 3.1:-83032759 | None:intergenic |
GCTCGGAGATTGACGGAATG+CGG | 0.551051 | 3.1:+83027466 | MS.gene32757:CDS |
TGGTTGCGACGGCGTTTAGT+GGG | 0.553952 | 3.1:-83027139 | None:intergenic |
TCGGTCTCCGACCTCAGGAA+AGG | 0.556090 | 3.1:+83036712 | MS.gene32757:CDS |
TTGGGTGCTCTATTGGGACC+AGG | 0.557223 | 3.1:+83028103 | MS.gene32757:CDS |
ACGCCCATCTATTTCTGCCA+AGG | 0.557392 | 3.1:-83034031 | None:intergenic |
AAGTGATTCTCCTGTAAGCA+TGG | 0.558731 | 3.1:-83030271 | None:intergenic |
GATATCCAAGATTGTACGCA+TGG | 0.559082 | 3.1:+83030533 | MS.gene32757:CDS |
GATGTGCTAGAACGCTTGGC+CGG | 0.562371 | 3.1:+83033045 | MS.gene32757:CDS |
GAGAAATGAAGTGGCGGTGA+TGG | 0.563437 | 3.1:-83027111 | None:intergenic |
ACACCAACAGCAATCCTAGT+TGG | 0.570660 | 3.1:+83032745 | MS.gene32757:CDS |
AGATTTCTGCTGCGGAGACA+AGG | 0.570688 | 3.1:-83035160 | None:intergenic |
TAAGCACACTGTCAGTAGAT+GGG | 0.571811 | 3.1:-83029837 | None:intergenic |
GGAGTTGGTGAAGAAGAAAG+AGG | 0.572672 | 3.1:+83027549 | MS.gene32757:CDS |
TCACCGGAATGATGTGCGGC+GGG | 0.574066 | 3.1:+83027308 | MS.gene32757:CDS |
TGTGAGGAAGTGGAAGGAGT+TGG | 0.575014 | 3.1:+83027534 | MS.gene32757:CDS |
CTTATCAGGAGACAGGGAAG+AGG | 0.575212 | 3.1:+83035083 | MS.gene32757:CDS |
AGCTGCTTTCATCATCAGCT+CGG | 0.579006 | 3.1:+83028604 | MS.gene32757:CDS |
GAAACGGAAGTTAGGTGGAG+AGG | 0.579912 | 3.1:-83027068 | None:intergenic |
CCTACTCGAATATCATCAGT+TGG | 0.581292 | 3.1:-83029886 | None:intergenic |
AGAATCGGGTTTAGGAGTTG+CGG | 0.581674 | 3.1:+83027507 | MS.gene32757:CDS |
AGGGACTTCTTATCAGAGGA+GGG | 0.583108 | 3.1:+83033022 | MS.gene32757:CDS |
TAGCTCAGACGCAATTTGTG+TGG | 0.583550 | 3.1:+83029858 | MS.gene32757:CDS |
AGCAAGTCTATCCGCAACGC+TGG | 0.584683 | 3.1:-83027446 | None:intergenic |
TCCATAATGAATAGAGCCAA+TGG | 0.585029 | 3.1:-83033866 | None:intergenic |
GCCAAATATGAACTCTCTCG+TGG | 0.585086 | 3.1:+83028568 | MS.gene32757:CDS |
ATCCTTTCTTAAAAGCAAGT+AGG | 0.585194 | 3.1:-83028544 | None:intergenic |
TCTATAGGGATAGTTTCTCC+AGG | 0.586494 | 3.1:-83029928 | None:intergenic |
AACATCAGCTGCAGCCAAAG+AGG | 0.588636 | 3.1:-83036000 | None:intergenic |
TTGCAAGGCTCAAGAAGAAG+GGG | 0.589036 | 3.1:+83035046 | MS.gene32757:intron |
CTCACTACTTAACCCCGAGC+TGG | 0.591206 | 3.1:+83028743 | MS.gene32757:CDS |
TGAGTTGCTAACCACCAAGA+TGG | 0.592282 | 3.1:-83036672 | None:intergenic |
GGCAGTTGCAACAATTGCAG+AGG | 0.593945 | 3.1:+83035104 | MS.gene32757:CDS |
CTTTCTAAGTTTAACAGCAG+CGG | 0.594661 | 3.1:-83027407 | None:intergenic |
TACGTTGGACGTGAAGGAGA+AGG | 0.594724 | 3.1:+83034195 | MS.gene32757:CDS |
CCCGATTCTCTCCTCTTCGT+CGG | 0.595530 | 3.1:-83027493 | None:intergenic |
CAAGAAGAAGGGGATTGAAA+CGG | 0.597612 | 3.1:+83035056 | MS.gene32757:CDS |
GTTCTCTAGAAGAAAAGGCT+AGG | 0.598245 | 3.1:+83029035 | MS.gene32757:CDS |
AAGGGACTTCTTATCAGAGG+AGG | 0.598690 | 3.1:+83033021 | MS.gene32757:CDS |
CCAACTGATGATATTCGAGT+AGG | 0.598800 | 3.1:+83029886 | MS.gene32757:CDS |
CGCGTGAAGCACCTGTACAA+AGG | 0.598846 | 3.1:+83031191 | MS.gene32757:CDS |
CAAGATTCATCAAATCAGAT+GGG | 0.598878 | 3.1:-83034110 | None:intergenic |
GGAGAATGTGAGGAAGTGGA+AGG | 0.599169 | 3.1:+83027528 | MS.gene32757:CDS |
AGAGGAATCTACCAGCGTTG+CGG | 0.600192 | 3.1:+83027435 | MS.gene32757:CDS |
TGCATCTCATCCAATAGCAA+AGG | 0.602358 | 3.1:+83033930 | MS.gene32757:CDS |
AACTAGGATTGCTGTTGGTG+TGG | 0.602361 | 3.1:-83032743 | None:intergenic |
TCGAAAACAGTTGTCTACGT+TGG | 0.602964 | 3.1:+83034180 | MS.gene32757:CDS |
CATAAATAAAGTACCAAGTG+AGG | 0.603524 | 3.1:-83032770 | None:intergenic |
GTTGTCTACGTTGGACGTGA+AGG | 0.605611 | 3.1:+83034189 | MS.gene32757:CDS |
CCTTCTCTAAGGTAGGTGAT+GGG | 0.610377 | 3.1:+83035964 | MS.gene32757:intron |
CCAAATATGAACTCTCTCGT+GGG | 0.610704 | 3.1:+83028569 | MS.gene32757:CDS |
TGAGTCAACTCGATCGTCGG+AGG | 0.611355 | 3.1:-83027359 | None:intergenic |
AGTGAGCCCTTTCCTGAGGT+CGG | 0.612044 | 3.1:-83036719 | None:intergenic |
GGCTTGCAGATTCAATAGCA+GGG | 0.612988 | 3.1:+83031212 | MS.gene32757:CDS |
TAATTGAAACGGAAGTTAGG+TGG | 0.614884 | 3.1:-83027073 | None:intergenic |
CATTGCAGGAAGAAGCGTTG+TGG | 0.615848 | 3.1:+83030242 | MS.gene32757:CDS |
CACGCCAGCAGCAATGGGAA+CGG | 0.621869 | 3.1:-83036387 | None:intergenic |
ACATCAGCTGCAGCCAAAGA+GGG | 0.622600 | 3.1:-83035999 | None:intergenic |
ATGCTGAATCTACTGTAATG+AGG | 0.627054 | 3.1:+83034259 | MS.gene32757:CDS |
GACGTCACCGGAATGATGTG+CGG | 0.627196 | 3.1:+83027304 | MS.gene32757:CDS |
TTCAGCAGGAACTATAAACT+GGG | 0.627325 | 3.1:+83030323 | MS.gene32757:CDS |
TTGATATGGAGAAGTGTGAC+CGG | 0.627768 | 3.1:-83027180 | None:intergenic |
TGACGCATTAGACCTAGCAC+AGG | 0.630993 | 3.1:+83036307 | MS.gene32757:CDS |
TCGAGTAGGAGACTCGGTGT+TGG | 0.632051 | 3.1:+83029900 | MS.gene32757:CDS |
TATGATGGATGCTGCATCTG+AGG | 0.635759 | 3.1:-83036060 | None:intergenic |
ACTTTGGTCGCGTTGTGCTG+TGG | 0.635968 | 3.1:+83027613 | MS.gene32757:CDS |
TGCTGGACATCATGTTGCGA+TGG | 0.636090 | 3.1:+83035206 | MS.gene32757:CDS |
GTCATAGCAAAGTCAAATTG+GGG | 0.640077 | 3.1:-83036416 | None:intergenic |
TGGGAAGCAGAGAAATGAAG+TGG | 0.640569 | 3.1:-83027120 | None:intergenic |
GTGCCAACTAGGATTGCTGT+TGG | 0.641116 | 3.1:-83032748 | None:intergenic |
TTTGAAGATGATGCACTCGA+CGG | 0.641919 | 3.1:-83034153 | None:intergenic |
CTAGAGTGAGCCCTTTCCTG+AGG | 0.642871 | 3.1:-83036723 | None:intergenic |
GTGGCAAGACCCAATGCACA+AGG | 0.645427 | 3.1:-83032724 | None:intergenic |
ACTCGACGGATGATTCATCA+AGG | 0.647038 | 3.1:-83034139 | None:intergenic |
ATGCATCCCATGCCAGCTCG+GGG | 0.649016 | 3.1:-83028755 | None:intergenic |
GTCACCGGAATGATGTGCGG+CGG | 0.649191 | 3.1:+83027307 | MS.gene32757:CDS |
AATGCGGGTTTCCGACGAAG+AGG | 0.651189 | 3.1:+83027482 | MS.gene32757:CDS |
AGAAATTCTTCAGATTGCTG+CGG | 0.651422 | 3.1:+83033894 | MS.gene32757:CDS |
TAAACTTAGAAAGCTCGAAG+AGG | 0.652851 | 3.1:+83027417 | MS.gene32757:CDS |
AGACCTAGCACAGGCAACGA+TGG | 0.652994 | 3.1:+83036316 | MS.gene32757:CDS |
AAATTATATCGCTCTAGACA+AGG | 0.661694 | 3.1:+83033071 | MS.gene32757:CDS |
GGTTGCTCACCTGAAAGTGA+AGG | 0.663313 | 3.1:-83036440 | None:intergenic |
GGTCCTCTTATCAGGAGACA+GGG | 0.665982 | 3.1:+83035077 | MS.gene32757:CDS |
ATGAATGCAGATTTCTGCTG+CGG | 0.676535 | 3.1:-83035168 | None:intergenic |
TGATATTCGAGTAGGAGACT+CGG | 0.680731 | 3.1:+83029894 | MS.gene32757:CDS |
AAAGGACAGATAGTTGAACC+AGG | 0.681507 | 3.1:+83034000 | MS.gene32757:CDS |
GGGACTTCTTATCAGAGGAG+GGG | 0.682700 | 3.1:+83033023 | MS.gene32757:CDS |
TAGAGCGATATAATTTACAC+CGG | 0.688008 | 3.1:-83033064 | None:intergenic |
CAGACAGGAACCCTTACCAG+AGG | 0.689029 | 3.1:+83033826 | MS.gene32757:intron |
AAGTCCAAGCAAATGCAACA+CGG | 0.698511 | 3.1:-83027594 | None:intergenic |
GAAGCAGAGAAATGAAGTGG+CGG | 0.705033 | 3.1:-83027117 | None:intergenic |
GCGTTGCGGATAGACTTGCT+CGG | 0.707676 | 3.1:+83027449 | MS.gene32757:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 83027037 | 83036745 | 83027037 | ID=MS.gene32757 |
chr3.1 | mRNA | 83027037 | 83036745 | 83027037 | ID=MS.gene32757.t1;Parent=MS.gene32757 |
chr3.1 | exon | 83027037 | 83027685 | 83027037 | ID=MS.gene32757.t1.exon1;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83027037 | 83027685 | 83027037 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83028053 | 83028130 | 83028053 | ID=MS.gene32757.t1.exon2;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83028053 | 83028130 | 83028053 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83028528 | 83028625 | 83028528 | ID=MS.gene32757.t1.exon3;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83028528 | 83028625 | 83028528 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83028741 | 83028794 | 83028741 | ID=MS.gene32757.t1.exon4;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83028741 | 83028794 | 83028741 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83029004 | 83029090 | 83029004 | ID=MS.gene32757.t1.exon5;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83029004 | 83029090 | 83029004 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83029787 | 83029951 | 83029787 | ID=MS.gene32757.t1.exon6;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83029787 | 83029951 | 83029787 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83030234 | 83030344 | 83030234 | ID=MS.gene32757.t1.exon7;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83030234 | 83030344 | 83030234 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83030486 | 83030554 | 83030486 | ID=MS.gene32757.t1.exon8;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83030486 | 83030554 | 83030486 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83031175 | 83031284 | 83031175 | ID=MS.gene32757.t1.exon9;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83031175 | 83031284 | 83031175 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83032122 | 83032227 | 83032122 | ID=MS.gene32757.t1.exon10;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83032122 | 83032227 | 83032122 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83032712 | 83032778 | 83032712 | ID=MS.gene32757.t1.exon11;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83032712 | 83032778 | 83032712 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83033013 | 83033092 | 83033013 | ID=MS.gene32757.t1.exon12;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83033013 | 83033092 | 83033013 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83033829 | 83034280 | 83033829 | ID=MS.gene32757.t1.exon13;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83033829 | 83034280 | 83033829 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83035053 | 83035227 | 83035053 | ID=MS.gene32757.t1.exon14;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83035053 | 83035227 | 83035053 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83035975 | 83036106 | 83035975 | ID=MS.gene32757.t1.exon15;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83035975 | 83036106 | 83035975 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83036302 | 83036452 | 83036302 | ID=MS.gene32757.t1.exon16;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83036302 | 83036452 | 83036302 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
chr3.1 | exon | 83036651 | 83036745 | 83036651 | ID=MS.gene32757.t1.exon17;Parent=MS.gene32757.t1 |
chr3.1 | CDS | 83036651 | 83036745 | 83036651 | ID=cds.MS.gene32757.t1;Parent=MS.gene32757.t1 |
Gene Sequence |
Protein sequence |