Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90280.t1 | XP_013457192.1 | 91.6 | 239 | 17 | 1 | 1 | 239 | 1 | 236 | 2.40E-89 | 338.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90280.t1 | Q9SZC9 | 65.8 | 117 | 40 | 0 | 123 | 239 | 133 | 249 | 3.4e-36 | 153.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90280.t1 | A0A072UQ87 | 91.6 | 239 | 17 | 1 | 1 | 239 | 1 | 236 | 1.7e-89 | 338.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050128 | MS.gene90280 | 0.812828 | 3.48E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene90280 | 0.835337 | 1.78E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene90280 | 0.806986 | 6.30E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene90280 | 0.800939 | 1.14E-48 | -1.69E-46 |
| MS.gene051471 | MS.gene90280 | 0.800799 | 1.22E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene90280 | 0.844559 | 7.01E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene90280 | 0.800581 | 1.35E-48 | -1.69E-46 |
| MS.gene052326 | MS.gene90280 | 0.801407 | 9.14E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene90280 | 0.843023 | 1.81E-58 | -1.69E-46 |
| MS.gene05455 | MS.gene90280 | 0.818834 | 1.59E-52 | -1.69E-46 |
| MS.gene055390 | MS.gene90280 | 0.842833 | 2.03E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene90280 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene056407 | MS.gene90280 | 0.80128 | 9.70E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene90280 | 0.813858 | 2.07E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene90280 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene90280 | 0.845088 | 5.05E-59 | -1.69E-46 |
| MS.gene057449 | MS.gene90280 | 0.834591 | 2.74E-56 | -1.69E-46 |
| MS.gene057450 | MS.gene90280 | 0.854553 | 1.14E-61 | -1.69E-46 |
| MS.gene057927 | MS.gene90280 | 0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene90280 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene90280 | 0.81328 | 2.77E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene90280 | 0.816728 | 4.76E-52 | -1.69E-46 |
| MS.gene058365 | MS.gene90280 | 0.829854 | 4.08E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene90280 | 0.81068 | 1.02E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene90280 | 0.805992 | 1.02E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene90280 | 0.831894 | 1.29E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene90280 | 0.801906 | 7.22E-49 | -1.69E-46 |
| MS.gene059708 | MS.gene90280 | 0.853583 | 2.17E-61 | -1.69E-46 |
| MS.gene05986 | MS.gene90280 | 0.828135 | 1.06E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene90280 | 0.804021 | 2.64E-49 | -1.69E-46 |
| MS.gene060005 | MS.gene90280 | 0.80186 | 7.38E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene90280 | 0.802404 | 5.70E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene90280 | -0.842019 | 3.34E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87466 | MS.gene90280 | PPI |
| MS.gene90280 | MS.gene58690 | PPI |
| MS.gene36515 | MS.gene90280 | PPI |
| MS.gene90280 | MS.gene028274 | PPI |
| MS.gene072795 | MS.gene90280 | PPI |
| MS.gene060325 | MS.gene90280 | PPI |
| MS.gene90280 | MS.gene012023 | PPI |
| MS.gene90280 | MS.gene015565 | PPI |
| MS.gene76418 | MS.gene90280 | PPI |
| MS.gene90280 | MS.gene019298 | PPI |
| MS.gene073463 | MS.gene90280 | PPI |
| MS.gene90280 | MS.gene42675 | PPI |
| MS.gene35184 | MS.gene90280 | PPI |
| MS.gene90280 | MS.gene57466 | PPI |
| MS.gene90280 | MS.gene32757 | PPI |
| MS.gene90280 | MS.gene42637 | PPI |
| MS.gene023194 | MS.gene90280 | PPI |
| MS.gene014966 | MS.gene90280 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90280.t1 | MTR_4g094232 | 92.469 | 239 | 15 | 1 | 1 | 239 | 1 | 236 | 1.32e-118 | 360 |
| MS.gene90280.t1 | MTR_7g116990 | 58.974 | 78 | 29 | 1 | 140 | 214 | 82 | 159 | 4.46e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90280.t1 | AT4G33520 | 65.812 | 117 | 40 | 0 | 123 | 239 | 133 | 249 | 3.10e-45 | 161 |
| MS.gene90280.t1 | AT4G33520 | 65.812 | 117 | 40 | 0 | 123 | 239 | 133 | 249 | 3.10e-45 | 161 |
| MS.gene90280.t1 | AT4G33520 | 67.677 | 99 | 32 | 0 | 123 | 221 | 133 | 231 | 1.62e-40 | 139 |
| MS.gene90280.t1 | AT4G33520 | 71.277 | 94 | 27 | 0 | 123 | 216 | 133 | 226 | 8.22e-40 | 137 |
Find 0 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTTTTTGGAAATT+TGG | + | 33270:9987-10006 | MS.gene90280:intron | 10.0% |
| !! | AAAATGGAAAACAATATTAT+TGG | + | 33270:10189-10208 | MS.gene90280:intron | 15.0% |
| !! | AAATGGAAAACAATATTATT+GGG | + | 33270:10190-10209 | MS.gene90280:intron | 15.0% |
| !! | ATTATTTGAGTATATATACT+TGG | + | 33270:8941-8960 | MS.gene90280:intron | 15.0% |
| !! | TAAATAACAAAAAAAATCCA+GGG | + | 33270:10218-10237 | MS.gene90280:intron | 15.0% |
| !! | TTAAATAACAAAAAAAATCC+AGG | + | 33270:10217-10236 | MS.gene90280:intron | 15.0% |
| !!! | GGATTTTTTTTGTTATTTAA+TGG | - | 33270:10217-10236 | MS.gene90280:intergenic | 15.0% |
| !!! | TCAAGTAAGTTTTTTATATT+TGG | + | 33270:8396-8415 | MS.gene90280:intron | 15.0% |
| !!! | TCTGTGTTAATATTTTTTTT+TGG | + | 33270:9979-9998 | MS.gene90280:intron | 15.0% |
| !!! | TGTATTTTTACTTTATGTTT+CGG | + | 33270:8776-8795 | MS.gene90280:intron | 15.0% |
| !!! | TTAAAGGATTTTAAATAACT+AGG | + | 33270:10119-10138 | MS.gene90280:intron | 15.0% |
| !! | ACCAAAATAGAAAACATAAA+AGG | + | 33270:10162-10181 | MS.gene90280:intron | 20.0% |
| !! | CCAAAATAGAAAACATAAAA+GGG | + | 33270:10163-10182 | MS.gene90280:intron | 20.0% |
| !! | TCTTTCTTTCAAAAATTTGT+AGG | - | 33270:10368-10387 | MS.gene90280:intergenic | 20.0% |
| !! | TGATAATTGTGAATATATCA+AGG | - | 33270:8854-8873 | MS.gene90280:intergenic | 20.0% |
| !!! | ACAAATTTTTGAAAGAAAGA+TGG | + | 33270:10368-10387 | MS.gene90280:CDS | 20.0% |
| !!! | CATTTTGTTTATATGAAGTT+TGG | + | 33270:9218-9237 | MS.gene90280:intron | 20.0% |
| !!! | CTTTCATTATCTTATTTCTA+CGG | + | 33270:8446-8465 | MS.gene90280:intron | 20.0% |
| !!! | TTTATCTGTCAATAATTTTG+CGG | + | 33270:9392-9411 | MS.gene90280:intron | 20.0% |
| ! | AAACATAAAAGGGATCAAAA+TGG | + | 33270:10173-10192 | MS.gene90280:intron | 25.0% |
| ! | CACAACAATAATAAAGGAAT+TGG | - | 33270:9538-9557 | MS.gene90280:intergenic | 25.0% |
| ! | CCTTAAAAACTAGTTATCAA+GGG | - | 33270:9657-9676 | MS.gene90280:intergenic | 25.0% |
| ! | CTTAAAAACTAGTTATCAAG+GGG | - | 33270:9656-9675 | MS.gene90280:intergenic | 25.0% |
| ! | GCAAAATTATTGACAGATAA+AGG | - | 33270:9393-9412 | MS.gene90280:intergenic | 25.0% |
| ! | TAAACAATGATTCTTAAGCA+TGG | + | 33270:9077-9096 | MS.gene90280:intron | 25.0% |
| ! | TATCATATAAATTGCATGCT+TGG | + | 33270:8869-8888 | MS.gene90280:intron | 25.0% |
| ! | TTAAAAACTAGTTATCAAGG+GGG | - | 33270:9655-9674 | MS.gene90280:intergenic | 25.0% |
| ! | TTGTAATATGCAGTAGTTAA+AGG | - | 33270:8916-8935 | MS.gene90280:intergenic | 25.0% |
| ! | TTGTTTATATGAAGTTTGGT+GGG | + | 33270:9222-9241 | MS.gene90280:intron | 25.0% |
| ! | TTTGTTTATATGAAGTTTGG+TGG | + | 33270:9221-9240 | MS.gene90280:intron | 25.0% |
| !! | CCCTTTTATGTTTTCTATTT+TGG | - | 33270:10166-10185 | MS.gene90280:intergenic | 25.0% |
| !!! | CCTTGATAACTAGTTTTTAA+GGG | + | 33270:9655-9674 | MS.gene90280:intron | 25.0% |
| !!! | TTGTTATTCATCTAGGATTT+TGG | + | 33270:8965-8984 | MS.gene90280:intron | 25.0% |
| !!! | TTTTGTTTGTGTGTTTGTTA+GGG | + | 33270:8325-8344 | MS.gene90280:intron | 25.0% |
| AAATCCTTTAAACCACATAC+AGG | - | 33270:10110-10129 | None:intergenic | 30.0% | |
| AAGCTAGTATAACTTCAACT+AGG | - | 33270:10277-10296 | MS.gene90280:intergenic | 30.0% | |
| AAGTTACACAGACATATCAT+TGG | - | 33270:10303-10322 | MS.gene90280:intergenic | 30.0% | |
| AATATGCAGTAGTTAAAGGA+TGG | - | 33270:8912-8931 | MS.gene90280:intergenic | 30.0% | |
| AGCAAATTCTTTAACATTCC+AGG | - | 33270:9346-9365 | MS.gene90280:intergenic | 30.0% | |
| AGGACCAAAACAAAATAACT+AGG | + | 33270:10139-10158 | MS.gene90280:intron | 30.0% | |
| ATATAAATTGCATGCTTGGT+TGG | + | 33270:8873-8892 | MS.gene90280:intron | 30.0% | |
| ATGAGCTTGAAAATATACCA+CGG | - | 33270:8748-8767 | MS.gene90280:intergenic | 30.0% | |
| CAAATTGGCAAAAGCAATTA+GGG | + | 33270:8675-8694 | MS.gene90280:CDS | 30.0% | |
| CCCTTAAAAACTAGTTATCA+AGG | - | 33270:9658-9677 | MS.gene90280:intergenic | 30.0% | |
| CCTTTATTATTGTTGTGACA+GGG | + | 33270:9541-9560 | MS.gene90280:intron | 30.0% | |
| GCAAATTCTTTAACATTCCA+GGG | - | 33270:9345-9364 | MS.gene90280:intergenic | 30.0% | |
| TACGCTTAAGTAGTTGAAAT+GGG | + | 33270:8506-8525 | MS.gene90280:intron | 30.0% | |
| TCCTTTATTATTGTTGTGAC+AGG | + | 33270:9540-9559 | MS.gene90280:intron | 30.0% | |
| TGAAAAATTAACCACTCTTC+AGG | - | 33270:9949-9968 | MS.gene90280:intergenic | 30.0% | |
| TGTTATCATTCTCGATGTTT+CGG | + | 33270:8226-8245 | MS.gene90280:CDS | 30.0% | |
| TTATGCTTCAAACCAATAAG+TGG | - | 33270:9805-9824 | MS.gene90280:intergenic | 30.0% | |
| TTCAGATCAATCAAATTCTG+TGG | + | 33270:10066-10085 | MS.gene90280:intron | 30.0% | |
| TTTCTTCCGAACTTCAATTT+GGG | + | 33270:9031-9050 | MS.gene90280:intron | 30.0% | |
| ! | ATTCAAGCTTTTCCACTTAT+TGG | + | 33270:9790-9809 | MS.gene90280:intron | 30.0% |
| !! | ACTTGGTTTGTTATTCATCT+AGG | + | 33270:8958-8977 | MS.gene90280:intron | 30.0% |
| !! | GGATTTTGTTATGCTATAGT+GGG | - | 33270:9517-9536 | MS.gene90280:intergenic | 30.0% |
| !! | TATTCATCTAGGATTTTGGT+TGG | + | 33270:8969-8988 | MS.gene90280:intron | 30.0% |
| !! | TGGATTTTGTTATGCTATAG+TGG | - | 33270:9518-9537 | MS.gene90280:intergenic | 30.0% |
| !! | TGGTCCTAGTTATTTTGTTT+TGG | - | 33270:10146-10165 | MS.gene90280:intergenic | 30.0% |
| !!! | CCCTTGATAACTAGTTTTTA+AGG | + | 33270:9654-9673 | MS.gene90280:intron | 30.0% |
| !!! | GATAACTAGTTTTTAAGGGA+GGG | + | 33270:9659-9678 | MS.gene90280:intron | 30.0% |
| !!! | GTTTTGTTTGTGTGTTTGTT+AGG | + | 33270:8324-8343 | MS.gene90280:intron | 30.0% |
| !!! | TGATAACTAGTTTTTAAGGG+AGG | + | 33270:9658-9677 | MS.gene90280:intron | 30.0% |
| AAGCAAAAACTGCACCAAAT+TGG | + | 33270:8660-8679 | MS.gene90280:CDS | 35.0% | |
| ACAATGATTCTTAAGCATGG+AGG | + | 33270:9080-9099 | MS.gene90280:intron | 35.0% | |
| ACATCGAGAATGATAACATC+AGG | - | 33270:8224-8243 | MS.gene90280:intergenic | 35.0% | |
| ACTGCTAAGTAGACAACTAA+GGG | - | 33270:9156-9175 | MS.gene90280:intergenic | 35.0% | |
| ACTGTTCCCAAATTGAAGTT+CGG | - | 33270:9040-9059 | MS.gene90280:intergenic | 35.0% | |
| ATATAGTGACAGTTCAGTCT+AGG | + | 33270:9849-9868 | MS.gene90280:intron | 35.0% | |
| ATGGACGTAAAATACAGCAT+TGG | + | 33270:9120-9139 | MS.gene90280:intron | 35.0% | |
| ATTGAAGTTCGGAAGAAAGT+TGG | - | 33270:9029-9048 | MS.gene90280:intergenic | 35.0% | |
| CCAAATTGGCAAAAGCAATT+AGG | + | 33270:8674-8693 | MS.gene90280:CDS | 35.0% | |
| CCCTGTCACAACAATAATAA+AGG | - | 33270:9544-9563 | MS.gene90280:intergenic | 35.0% | |
| CTTTCTTCCGAACTTCAATT+TGG | + | 33270:9030-9049 | MS.gene90280:intron | 35.0% | |
| GTACGCTTAAGTAGTTGAAA+TGG | + | 33270:8505-8524 | MS.gene90280:intron | 35.0% | |
| ! | ATGTTTTTCATTTTCGTCCC+TGG | - | 33270:10238-10257 | MS.gene90280:intergenic | 35.0% |
| ! | GATGGTAGTGTAAAATTGGT+TGG | + | 33270:8167-8186 | MS.gene90280:CDS | 35.0% |
| ! | TGCTGTATTTTACGTCCATT+TGG | - | 33270:9119-9138 | MS.gene90280:intergenic | 35.0% |
| ! | TGGAGATGGTAGTGTAAAAT+TGG | + | 33270:8163-8182 | MS.gene90280:CDS | 35.0% |
| ! | TTTGTGTGTTTGTTAGGGAA+TGG | + | 33270:8330-8349 | MS.gene90280:intron | 35.0% |
| !! | CCTAATTGCTTTTGCCAATT+TGG | - | 33270:8677-8696 | MS.gene90280:intergenic | 35.0% |
| !! | CTTTATGTTTCGGTGTTTGT+TGG | + | 33270:8786-8805 | MS.gene90280:intron | 35.0% |
| AAGTTCCACATCAAGTGGTA+TGG | + | 33270:9586-9605 | MS.gene90280:intron | 40.0% | |
| AATCAACCTCTCAGTGTAGT+TGG | + | 33270:9875-9894 | MS.gene90280:intron | 40.0% | |
| ACTTAACCAACTACACTGAG+AGG | - | 33270:9884-9903 | MS.gene90280:intergenic | 40.0% | |
| AGAAGAACCAAAAGAAGCAG+CGG | - | 33270:8069-8088 | MS.gene90280:intergenic | 40.0% | |
| AGCAGCTGTACACGTTAATT+GGG | - | 33270:9479-9498 | MS.gene90280:intergenic | 40.0% | |
| AGCTTGAAAATATACCACGG+AGG | - | 33270:8745-8764 | MS.gene90280:intergenic | 40.0% | |
| AGTTCCACATCAAGTGGTAT+GGG | + | 33270:9587-9606 | MS.gene90280:intron | 40.0% | |
| ATACCACTTGATGTGGAACT+TGG | - | 33270:9587-9606 | MS.gene90280:intergenic | 40.0% | |
| ATCAAGTGGTATGGGATGTT+TGG | + | 33270:9595-9614 | MS.gene90280:intron | 40.0% | |
| ATGGCCTGTATGTGGTTTAA+AGG | + | 33270:10103-10122 | MS.gene90280:intron | 40.0% | |
| CAACAGAGACAGCAATAGTT+TGG | + | 33270:8627-8646 | MS.gene90280:CDS | 40.0% | |
| GACTGCTAAGTAGACAACTA+AGG | - | 33270:9157-9176 | MS.gene90280:intergenic | 40.0% | |
| GCAGAACATTTAACTAGCTG+TGG | + | 33270:8707-8726 | MS.gene90280:CDS | 40.0% | |
| GGTACAGTTGAATTGCCAAA+TGG | + | 33270:9101-9120 | MS.gene90280:intron | 40.0% | |
| GGTTGTTGTAGGAAGTAACA+GGG | - | 33270:7929-7948 | MS.gene90280:intergenic | 40.0% | |
| TACCACTTGATGTGGAACTT+GGG | - | 33270:9586-9605 | MS.gene90280:intergenic | 40.0% | |
| TATTGTTGTGACAGGGACTT+GGG | + | 33270:9548-9567 | MS.gene90280:intron | 40.0% | |
| TCATCAGTAAGTAGCAAGTC+AGG | - | 33270:8824-8843 | MS.gene90280:intergenic | 40.0% | |
| TGCTTGCTTGGATGATTATC+AGG | + | 33270:9691-9710 | MS.gene90280:intron | 40.0% | |
| TTATTGTTGTGACAGGGACT+TGG | + | 33270:9547-9566 | MS.gene90280:intron | 40.0% | |
| ! | GCAGTTTTTGCTTCAGAAAC+AGG | - | 33270:8653-8672 | MS.gene90280:intergenic | 40.0% |
| ! | TTATCCCGTGAACATTGGTT+GGG | + | 33270:9419-9438 | MS.gene90280:intron | 40.0% |
| !! | ATGAAGTTTGGTGGGTTAAG+TGG | + | 33270:9230-9249 | MS.gene90280:intron | 40.0% |
| !! | GATAAAGAGAACTTGCTGAG+TGG | - | 33270:9751-9770 | MS.gene90280:intergenic | 40.0% |
| AAGTGGTATGGGATGTTTGG+TGG | + | 33270:9598-9617 | MS.gene90280:intron | 45.0% | |
| ACAACCCAACCAATGTTCAC+GGG | - | 33270:9426-9445 | MS.gene90280:intergenic | 45.0% | |
| ACACTAGCAGATGACACTTG+TGG | - | 33270:8599-8618 | MS.gene90280:intergenic | 45.0% | |
| ACAGGGACTTGGGTATTATG+GGG | + | 33270:9558-9577 | MS.gene90280:intron | 45.0% | |
| ACATCCCATACCACTTGATG+TGG | - | 33270:9594-9613 | MS.gene90280:intergenic | 45.0% | |
| AGCATCTGTGAAGAGGATTC+TGG | + | 33270:8369-8388 | MS.gene90280:CDS | 45.0% | |
| CACAACCCAACCAATGTTCA+CGG | - | 33270:9427-9446 | MS.gene90280:intergenic | 45.0% | |
| CAGCAGCTGTACACGTTAAT+TGG | - | 33270:9480-9499 | MS.gene90280:intergenic | 45.0% | |
| CGGTTGTTGTAGGAAGTAAC+AGG | - | 33270:7930-7949 | MS.gene90280:intergenic | 45.0% | |
| CTTATCCCGTGAACATTGGT+TGG | + | 33270:9418-9437 | MS.gene90280:intron | 45.0% | |
| GACAGGGACTTGGGTATTAT+GGG | + | 33270:9557-9576 | MS.gene90280:intron | 45.0% | |
| GACTCTTATCCCGTGAACAT+TGG | + | 33270:9414-9433 | MS.gene90280:intron | 45.0% | |
| GCATTTCACCGTCATTTCTC+CGG | + | 33270:7864-7883 | MS.gene90280:CDS | 45.0% | |
| GGACAGGTGGAGTAATTAAG+TGG | + | 33270:9619-9638 | MS.gene90280:intron | 45.0% | |
| GGCTAGTGATGTTCAAAGAG+TGG | - | 33270:9928-9947 | MS.gene90280:intergenic | 45.0% | |
| GGTGGAGTAATTAAGTGGCT+TGG | + | 33270:9624-9643 | MS.gene90280:intron | 45.0% | |
| GTACAAGAGGTAGAGGAACA+CGG | - | 33270:7963-7982 | MS.gene90280:intergenic | 45.0% | |
| TAATCATCCAAGCAAGCACC+CGG | - | 33270:9689-9708 | MS.gene90280:intergenic | 45.0% | |
| TGAAGCTTATGGCCTGTATG+TGG | + | 33270:10095-10114 | MS.gene90280:intron | 45.0% | |
| TGACAGGGACTTGGGTATTA+TGG | + | 33270:9556-9575 | MS.gene90280:intron | 45.0% | |
| TGTGGCGAAGTTGAAGCTTA+TGG | + | 33270:10084-10103 | MS.gene90280:intron | 45.0% | |
| ! | AACATCACTAGCCTGAAGAG+TGG | + | 33270:9935-9954 | MS.gene90280:intron | 45.0% |
| ! | CGTAGAAGTACAAGAGGTAG+AGG | - | 33270:7970-7989 | MS.gene90280:intergenic | 45.0% |
| ! | GTTTGTTAGGGAATGGTGTG+TGG | + | 33270:8337-8356 | MS.gene90280:intron | 45.0% |
| ! | TAACGGCGTAGAAGTACAAG+AGG | - | 33270:7976-7995 | MS.gene90280:intergenic | 45.0% |
| ! | TTACGGAGTGATGGCGATAA+CGG | - | 33270:7993-8012 | MS.gene90280:intergenic | 45.0% |
| !! | AAAGAGAACTTGCTGAGTGG+AGG | - | 33270:9748-9767 | MS.gene90280:intergenic | 45.0% |
| !! | AAGAGAACTTGCTGAGTGGA+GGG | - | 33270:9747-9766 | MS.gene90280:intergenic | 45.0% |
| !! | GTTTTTAAGGGAGGGTTCTC+CGG | + | 33270:9667-9686 | MS.gene90280:intron | 45.0% |
| !! | TTTTTAAGGGAGGGTTCTCC+GGG | + | 33270:9668-9687 | MS.gene90280:intron | 45.0% |
| !!! | GCTTCTTTTGGTTCTTCTGC+CGG | + | 33270:8071-8090 | MS.gene90280:CDS | 45.0% |
| AATGCGGGAACGGTTGTTGT+AGG | - | 33270:7940-7959 | MS.gene90280:intergenic | 50.0% | |
| AGATGCTGCGCAAGAGGTTT+CGG | + | 33270:8190-8209 | MS.gene90280:CDS | 50.0% | |
| AGGGAGCTTGAACACAGGTA+TGG | - | 33270:9326-9345 | MS.gene90280:intergenic | 50.0% | |
| AGGTAGAGGAACACGGAATG+CGG | - | 33270:7956-7975 | MS.gene90280:intergenic | 50.0% | |
| ATACCTGTGTTCAAGCTCCC+TGG | + | 33270:9325-9344 | MS.gene90280:intron | 50.0% | |
| ATTCCAGGGAGCTTGAACAC+AGG | - | 33270:9331-9350 | MS.gene90280:intergenic | 50.0% | |
| GATGTGCAGCATCTGTGAAG+AGG | + | 33270:8362-8381 | MS.gene90280:CDS | 50.0% | |
| GGTTTCAATTCTTGCCTCCG+TGG | + | 33270:8728-8747 | MS.gene90280:CDS | 50.0% | |
| TGCCCAAGTTCCACATCAAG+TGG | + | 33270:9581-9600 | MS.gene90280:intron | 50.0% | |
| TGTTAGGGAATGGTGTGTGG+TGG | + | 33270:8340-8359 | MS.gene90280:intron | 50.0% | |
| ! | AGGAAGTAACAGGGCGTTTG+AGG | - | 33270:7920-7939 | MS.gene90280:intergenic | 50.0% |
| ! | GTATGGGATGTTTGGTGGAC+AGG | + | 33270:9603-9622 | MS.gene90280:intron | 50.0% |
| ! | TAACAGGGCGTTTGAGGTTG+TGG | - | 33270:7914-7933 | MS.gene90280:intergenic | 50.0% |
| !!! | TCTTTTGGTTCTTCTGCCGG+CGG | + | 33270:8074-8093 | MS.gene90280:CDS | 50.0% |
| AGAAGCCAGAGGCTCACTGA+AGG | - | 33270:9284-9303 | MS.gene90280:intergenic | 55.0% | |
| AGGAACACGGAATGCGGGAA+CGG | - | 33270:7950-7969 | MS.gene90280:intergenic | 55.0% | |
| CAGATGACACTTGTGGCTGC+AGG | - | 33270:8592-8611 | MS.gene90280:intergenic | 55.0% | |
| GAAGCCAGAGGCTCACTGAA+GGG | - | 33270:9283-9302 | MS.gene90280:intergenic | 55.0% | |
| GCTGGAGTTGGAAATGGAGG+AGG | + | 33270:8110-8129 | MS.gene90280:CDS | 55.0% | |
| GGAGTTGGAAATGGAGGAGG+AGG | + | 33270:8113-8132 | MS.gene90280:CDS | 55.0% | |
| GGTAGAGGAACACGGAATGC+GGG | - | 33270:7955-7974 | MS.gene90280:intergenic | 55.0% | |
| GTTGGAAATGGAGGAGGAGG+TGG | + | 33270:8116-8135 | MS.gene90280:CDS | 55.0% | |
| TACTCACCACGAGAAGCCAG+AGG | - | 33270:9295-9314 | MS.gene90280:intergenic | 55.0% | |
| TGCGATAACCGTCACCACGA+CGG | + | 33270:7821-7840 | MS.gene90280:CDS | 55.0% | |
| ! | GAGGTGCTCCGGAGAAATGA+CGG | - | 33270:7875-7894 | MS.gene90280:intergenic | 55.0% |
| ! | GGTGCTGGAGTTGGAAATGG+AGG | + | 33270:8107-8126 | MS.gene90280:CDS | 55.0% |
| ! | TCGAGCTCCGCTGCTTCTTT+TGG | + | 33270:8059-8078 | MS.gene90280:CDS | 55.0% |
| ! | TCTGGTGGTGAGTCTGGAGA+TGG | + | 33270:8149-8168 | MS.gene90280:CDS | 55.0% |
| ! | TGGGATGTTTGGTGGACAGG+TGG | + | 33270:9606-9625 | MS.gene90280:intron | 55.0% |
| !! | AGTGGTTCTGGTGGTGAGTC+TGG | + | 33270:8143-8162 | MS.gene90280:CDS | 55.0% |
| !! | GGAAATGGAGGTGCTGGAGT+TGG | + | 33270:8098-8117 | MS.gene90280:CDS | 55.0% |
| !! | GGAGGTGCTGGAGTTGGAAA+TGG | + | 33270:8104-8123 | MS.gene90280:CDS | 55.0% |
| AAGTAGCATCTGCGCCGTCG+TGG | - | 33270:7838-7857 | MS.gene90280:intergenic | 60.0% | |
| AGAGCAGCGCGCGGAAGTTA+CGG | - | 33270:8010-8029 | MS.gene90280:intergenic | 60.0% | |
| AGCACCTCCATTTCCACCGC+CGG | - | 33270:8093-8112 | MS.gene90280:intergenic | 60.0% | |
| AGCTCGAAACGCAGCGCGTA+CGG | - | 33270:8046-8065 | MS.gene90280:intergenic | 60.0% | |
| CTCTCCCTTCAGTGAGCCTC+TGG | + | 33270:9276-9295 | MS.gene90280:intron | 60.0% | |
| GCGCGGAAGTTACGGAGTGA+TGG | - | 33270:8002-8021 | MS.gene90280:intergenic | 60.0% | |
| GGAAATGGAGGAGGAGGTGG+TGG | + | 33270:8119-8138 | MS.gene90280:CDS | 60.0% | |
| GGTTGGAGATGCTGCGCAAG+AGG | + | 33270:8184-8203 | MS.gene90280:CDS | 60.0% | |
| GTGTTCGTAAGAGCAGCGCG+CGG | - | 33270:8019-8038 | MS.gene90280:intergenic | 60.0% | |
| TCTTCTGCCGGCGGTGGAAA+TGG | + | 33270:8083-8102 | MS.gene90280:CDS | 60.0% | |
| ! | AGTGAGCCTCTGGCTTCTCG+TGG | + | 33270:9286-9305 | MS.gene90280:intron | 60.0% |
| ! | CAGGGCGTTTGAGGTTGTGG+CGG | - | 33270:7911-7930 | MS.gene90280:intergenic | 60.0% |
| !! | GGAGGTGGTGGTAGTGGTTC+TGG | + | 33270:8131-8150 | MS.gene90280:CDS | 60.0% |
| !! | GGTGGTGGTAGTGGTTCTGG+TGG | + | 33270:8134-8153 | MS.gene90280:CDS | 60.0% |
| !! | TTTGGTTCTTCTGCCGGCGG+TGG | + | 33270:8077-8096 | MS.gene90280:CDS | 60.0% |
| CATCTGCGCCGTCGTGGTGA+CGG | - | 33270:7832-7851 | MS.gene90280:intergenic | 65.0% | |
| GAAACGCAGCGCGTACGGCA+CGG | - | 33270:8041-8060 | MS.gene90280:intergenic | 65.0% | |
| GGGTTCTCCGGGTGCTTGCT+TGG | + | 33270:9679-9698 | MS.gene90280:intron | 65.0% | |
| TCTGCCGGCGGTGGAAATGG+AGG | + | 33270:8086-8105 | MS.gene90280:CDS | 65.0% | |
| ! | GAGTGTGCGGTGAGGTGCTC+CGG | - | 33270:7886-7905 | MS.gene90280:intergenic | 65.0% |
| ! | GGAGGAGGAGGTGGTGGTAG+TGG | + | 33270:8125-8144 | MS.gene90280:CDS | 65.0% |
| ! | GGCGGTGGAAATGGAGGTGC+TGG | + | 33270:8092-8111 | MS.gene90280:CDS | 65.0% |
| ! | GGCGTTTGAGGTTGTGGCGG+AGG | - | 33270:7908-7927 | MS.gene90280:intergenic | 65.0% |
| ! | GGTTGTGGCGGAGGAGTGTG+CGG | - | 33270:7899-7918 | MS.gene90280:intergenic | 65.0% |
| ! | TGGCGGAGGAGTGTGCGGTG+AGG | - | 33270:7894-7913 | MS.gene90280:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 33270 | gene | 7813 | 10420 | 7813 | ID=MS.gene90280 |
| 33270 | mRNA | 7813 | 10420 | 7813 | ID=MS.gene90280.t1;Parent=MS.gene90280 |
| 33270 | exon | 7813 | 8247 | 7813 | ID=MS.gene90280.t1.exon1;Parent=MS.gene90280.t1 |
| 33270 | CDS | 7813 | 8247 | 7813 | ID=cds.MS.gene90280.t1;Parent=MS.gene90280.t1 |
| 33270 | exon | 8346 | 8399 | 8346 | ID=MS.gene90280.t1.exon2;Parent=MS.gene90280.t1 |
| 33270 | CDS | 8346 | 8399 | 8346 | ID=cds.MS.gene90280.t1;Parent=MS.gene90280.t1 |
| 33270 | exon | 8596 | 8749 | 8596 | ID=MS.gene90280.t1.exon3;Parent=MS.gene90280.t1 |
| 33270 | CDS | 8596 | 8749 | 8596 | ID=cds.MS.gene90280.t1;Parent=MS.gene90280.t1 |
| 33270 | exon | 10346 | 10420 | 10346 | ID=MS.gene90280.t1.exon4;Parent=MS.gene90280.t1 |
| 33270 | CDS | 10346 | 10420 | 10346 | ID=cds.MS.gene90280.t1;Parent=MS.gene90280.t1 |
| Gene Sequence |
| Protein sequence |
