Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90176.t1 | XP_013457192.1 | 91.1 | 214 | 16 | 1 | 1 | 214 | 1 | 211 | 4.60E-76 | 294.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90176.t1 | Q9SZC9 | 71.7 | 92 | 26 | 0 | 123 | 214 | 133 | 224 | 3.3e-30 | 133.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90176.t1 | A0A072UQ87 | 91.1 | 214 | 16 | 1 | 1 | 214 | 1 | 211 | 3.3e-76 | 294.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene90176 | 0.824497 | 7.82E-54 | -1.69E-46 |
| MS.gene050128 | MS.gene90176 | 0.823623 | 1.25E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene90176 | 0.844109 | 9.27E-59 | -1.69E-46 |
| MS.gene050432 | MS.gene90176 | 0.815584 | 8.58E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene90176 | 0.807141 | 5.84E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene90176 | 0.816255 | 6.08E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene90176 | 0.800087 | 1.70E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene90176 | 0.855722 | 5.21E-62 | -1.69E-46 |
| MS.gene052310 | MS.gene90176 | 0.800049 | 1.73E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene90176 | 0.807365 | 5.24E-50 | -1.69E-46 |
| MS.gene053559 | MS.gene90176 | 0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene90176 | 0.84392 | 1.04E-58 | -1.69E-46 |
| MS.gene055390 | MS.gene90176 | 0.841258 | 5.30E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene90176 | 0.813377 | 2.64E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene90176 | 0.814336 | 1.62E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene90176 | 0.806892 | 6.60E-50 | -1.69E-46 |
| MS.gene05735 | MS.gene90176 | 0.801027 | 1.09E-48 | -1.69E-46 |
| MS.gene057448 | MS.gene90176 | 0.865799 | 4.54E-65 | -1.69E-46 |
| MS.gene057449 | MS.gene90176 | 0.851047 | 1.14E-60 | -1.69E-46 |
| MS.gene057450 | MS.gene90176 | 0.874447 | 6.71E-68 | -1.69E-46 |
| MS.gene057537 | MS.gene90176 | 0.809667 | 1.69E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene90176 | 0.813889 | 2.04E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene90176 | 0.816644 | 4.97E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene90176 | 0.80651 | 7.94E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene90176 | 0.829521 | 4.91E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene90176 | 0.838669 | 2.51E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene90176 | 0.806122 | 9.59E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene90176 | 0.807586 | 4.70E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene90176 | 0.80307 | 4.15E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene90176 | 0.818427 | 1.97E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene90176 | 0.812411 | 4.30E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene90176 | 0.819074 | 1.41E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene90176 | 0.818936 | 1.51E-52 | -1.69E-46 |
| MS.gene059708 | MS.gene90176 | 0.85726 | 1.84E-62 | -1.69E-46 |
| MS.gene05986 | MS.gene90176 | 0.81585 | 7.48E-52 | -1.69E-46 |
| MS.gene060005 | MS.gene90176 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene90176 | 0.820394 | 7.02E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene90176 | -0.82857 | 8.35E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073463 | MS.gene90176 | PPI |
| MS.gene90176 | MS.gene019298 | PPI |
| MS.gene35184 | MS.gene90176 | PPI |
| MS.gene90176 | MS.gene42675 | PPI |
| MS.gene90176 | MS.gene57466 | PPI |
| MS.gene90176 | MS.gene012023 | PPI |
| MS.gene90176 | MS.gene015565 | PPI |
| MS.gene014966 | MS.gene90176 | PPI |
| MS.gene90176 | MS.gene32757 | PPI |
| MS.gene023194 | MS.gene90176 | PPI |
| MS.gene36515 | MS.gene90176 | PPI |
| MS.gene90176 | MS.gene42637 | PPI |
| MS.gene87466 | MS.gene90176 | PPI |
| MS.gene90176 | MS.gene58690 | PPI |
| MS.gene76418 | MS.gene90176 | PPI |
| MS.gene90176 | MS.gene028274 | PPI |
| MS.gene072795 | MS.gene90176 | PPI |
| MS.gene060325 | MS.gene90176 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90176.t1 | MTR_4g094232 | 92.056 | 214 | 14 | 1 | 1 | 214 | 1 | 211 | 1.75e-99 | 308 |
| MS.gene90176.t1 | MTR_7g116990 | 58.974 | 78 | 29 | 1 | 140 | 214 | 82 | 159 | 1.93e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90176.t1 | AT4G33520 | 71.739 | 92 | 26 | 0 | 123 | 214 | 133 | 224 | 7.62e-40 | 137 |
| MS.gene90176.t1 | AT4G33520 | 71.739 | 92 | 26 | 0 | 123 | 214 | 133 | 224 | 7.99e-40 | 136 |
| MS.gene90176.t1 | AT4G33520 | 71.739 | 92 | 26 | 0 | 123 | 214 | 133 | 224 | 7.58e-37 | 136 |
| MS.gene90176.t1 | AT4G33520 | 71.739 | 92 | 26 | 0 | 123 | 214 | 133 | 224 | 8.11e-37 | 136 |
Find 64 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATTGGCAAAAGCAATT+AGG | 0.201723 | 4.2:-19252636 | MS.gene90176:CDS |
| TCGAGCTCCGCTGCTTCTTT+TGG | 0.239668 | 4.2:-19253251 | MS.gene90176:CDS |
| GGAGGTGGTGGTAGTGGTTC+TGG | 0.249231 | 4.2:-19253179 | MS.gene90176:CDS |
| TCTTCTGCCGGCGGTGGAAA+TGG | 0.342614 | 4.2:-19253227 | MS.gene90176:CDS |
| TGTTATCATTCTCGATGTTT+CGG | 0.361835 | 4.2:-19253084 | MS.gene90176:intron |
| AGATGCTGCGCAAGAGGTTT+CGG | 0.362319 | 4.2:-19253120 | MS.gene90176:CDS |
| CAAATTGGCAAAAGCAATTA+GGG | 0.366216 | 4.2:-19252635 | MS.gene90176:CDS |
| AGTGGTTCTGGTGGTGAGTC+TGG | 0.377787 | 4.2:-19253167 | MS.gene90176:CDS |
| TAACAGGGCGTTTGAGGTTG+TGG | 0.389375 | 4.2:+19253399 | None:intergenic |
| TGGAGATGGTAGTGTAAAAT+TGG | 0.390644 | 4.2:-19253147 | MS.gene90176:CDS |
| GGAGGTGCTGGAGTTGGAAA+TGG | 0.392164 | 4.2:-19253206 | MS.gene90176:CDS |
| GGCGTTTGAGGTTGTGGCGG+AGG | 0.403025 | 4.2:+19253405 | None:intergenic |
| CAACAGAGACAGCAATAGTT+TGG | 0.405470 | 4.2:-19252683 | MS.gene90176:CDS |
| GAGTGTGCGGTGAGGTGCTC+CGG | 0.405543 | 4.2:+19253427 | None:intergenic |
| CGGTTGTTGTAGGAAGTAAC+AGG | 0.413393 | 4.2:+19253383 | None:intergenic |
| GGAGGAGGAGGTGGTGGTAG+TGG | 0.418009 | 4.2:-19253185 | MS.gene90176:CDS |
| GGAAATGGAGGAGGAGGTGG+TGG | 0.421409 | 4.2:-19253191 | MS.gene90176:CDS |
| GGCGGTGGAAATGGAGGTGC+TGG | 0.439969 | 4.2:-19253218 | MS.gene90176:CDS |
| TTTGGTTCTTCTGCCGGCGG+TGG | 0.441304 | 4.2:-19253233 | MS.gene90176:CDS |
| AGCTCGAAACGCAGCGCGTA+CGG | 0.449637 | 4.2:+19253267 | None:intergenic |
| AGGAAGTAACAGGGCGTTTG+AGG | 0.450260 | 4.2:+19253393 | None:intergenic |
| GTTGGAAATGGAGGAGGAGG+TGG | 0.455716 | 4.2:-19253194 | MS.gene90176:CDS |
| TTACGGAGTGATGGCGATAA+CGG | 0.456860 | 4.2:+19253320 | None:intergenic |
| AGAGCAGCGCGCGGAAGTTA+CGG | 0.458880 | 4.2:+19253303 | None:intergenic |
| GCATTTCACCGTCATTTCTC+CGG | 0.458962 | 4.2:-19253446 | MS.gene90176:CDS |
| GATGGTAGTGTAAAATTGGT+TGG | 0.482307 | 4.2:-19253143 | MS.gene90176:CDS |
| AATGCGGGAACGGTTGTTGT+AGG | 0.484939 | 4.2:+19253373 | None:intergenic |
| ACGGTTATCGCAGAATCCAT+TGG | 0.500062 | 4.2:+19253500 | None:intergenic |
| AGCACCTCCATTTCCACCGC+CGG | 0.504429 | 4.2:+19253220 | None:intergenic |
| AGCATCTGTGAAGAGGATTC+TGG | 0.510233 | 4.2:-19252941 | MS.gene90176:CDS |
| GGAAATGGAGGTGCTGGAGT+TGG | 0.514880 | 4.2:-19253212 | MS.gene90176:CDS |
| ACATCGAGAATGATAACATC+AGG | 0.528838 | 4.2:+19253089 | None:intergenic |
| CATCTGCGCCGTCGTGGTGA+CGG | 0.530176 | 4.2:+19253481 | None:intergenic |
| GCTGGAGTTGGAAATGGAGG+AGG | 0.531934 | 4.2:-19253200 | MS.gene90176:CDS |
| CGTAGAAGTACAAGAGGTAG+AGG | 0.539542 | 4.2:+19253343 | None:intergenic |
| GCAGAACATTTAACTAGCTG+TGG | 0.547024 | 4.2:-19252603 | MS.gene90176:CDS |
| GGTAGAGGAACACGGAATGC+GGG | 0.552623 | 4.2:+19253358 | None:intergenic |
| GGAGTTGGAAATGGAGGAGG+AGG | 0.552972 | 4.2:-19253197 | MS.gene90176:CDS |
| GCGCGGAAGTTACGGAGTGA+TGG | 0.555469 | 4.2:+19253311 | None:intergenic |
| GGTTGGAGATGCTGCGCAAG+AGG | 0.555665 | 4.2:-19253126 | MS.gene90176:CDS |
| TCTGCCGGCGGTGGAAATGG+AGG | 0.568541 | 4.2:-19253224 | MS.gene90176:CDS |
| GAAACGCAGCGCGTACGGCA+CGG | 0.571618 | 4.2:+19253272 | None:intergenic |
| AGAAGAACCAAAAGAAGCAG+CGG | 0.577913 | 4.2:+19253244 | None:intergenic |
| TGTTAGGGAATGGTGTGTGG+TGG | 0.581724 | 4.2:-19252970 | MS.gene90176:intron |
| GGTTTCAATTCTTGCCTCCG+TGG | 0.583614 | 4.2:-19252582 | None:intergenic |
| GGTGGTGGTAGTGGTTCTGG+TGG | 0.594008 | 4.2:-19253176 | MS.gene90176:CDS |
| GGTGCTGGAGTTGGAAATGG+AGG | 0.596153 | 4.2:-19253203 | MS.gene90176:CDS |
| TCTGGTGGTGAGTCTGGAGA+TGG | 0.597845 | 4.2:-19253161 | MS.gene90176:CDS |
| AGGTAGAGGAACACGGAATG+CGG | 0.598468 | 4.2:+19253357 | None:intergenic |
| CAGGGCGTTTGAGGTTGTGG+CGG | 0.604275 | 4.2:+19253402 | None:intergenic |
| AGGAACACGGAATGCGGGAA+CGG | 0.604377 | 4.2:+19253363 | None:intergenic |
| GTTTGTTAGGGAATGGTGTG+TGG | 0.604721 | 4.2:-19252973 | MS.gene90176:intron |
| GAGGTGCTCCGGAGAAATGA+CGG | 0.610156 | 4.2:+19253438 | None:intergenic |
| GGTTGTGGCGGAGGAGTGTG+CGG | 0.647982 | 4.2:+19253414 | None:intergenic |
| ACACTAGCAGATGACACTTG+TGG | 0.655705 | 4.2:+19252714 | None:intergenic |
| GTACAAGAGGTAGAGGAACA+CGG | 0.659238 | 4.2:+19253350 | None:intergenic |
| TGCGATAACCGTCACCACGA+CGG | 0.665901 | 4.2:-19253489 | MS.gene90176:CDS |
| TAACGGCGTAGAAGTACAAG+AGG | 0.666502 | 4.2:+19253337 | None:intergenic |
| GATGTGCAGCATCTGTGAAG+AGG | 0.673377 | 4.2:-19252948 | MS.gene90176:CDS |
| AAGTAGCATCTGCGCCGTCG+TGG | 0.674934 | 4.2:+19253475 | None:intergenic |
| GGTTGTTGTAGGAAGTAACA+GGG | 0.716557 | 4.2:+19253384 | None:intergenic |
| TGGCGGAGGAGTGTGCGGTG+AGG | 0.719500 | 4.2:+19253419 | None:intergenic |
| GTGTTCGTAAGAGCAGCGCG+CGG | 0.723251 | 4.2:+19253294 | None:intergenic |
| AGCTTGAAAATATACCACGG+AGG | 0.776401 | 4.2:+19252568 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAGTAAGTTTTTTATATT+TGG | - | chr4.2:19253166-19253185 | MS.gene90176:CDS | 15.0% |
| !!! | CTTTCATTATCTTATTTCTA+CGG | - | chr4.2:19253216-19253235 | MS.gene90176:CDS | 20.0% |
| !!! | TTTTGTTTGTGTGTTTGTTA+GGG | - | chr4.2:19253095-19253114 | MS.gene90176:CDS | 25.0% |
| CAAATTGGCAAAAGCAATTA+GGG | - | chr4.2:19253445-19253464 | MS.gene90176:CDS | 30.0% | |
| TACGCTTAAGTAGTTGAAAT+GGG | - | chr4.2:19253276-19253295 | MS.gene90176:CDS | 30.0% | |
| TGTTATCATTCTCGATGTTT+CGG | - | chr4.2:19252996-19253015 | MS.gene90176:intron | 30.0% | |
| !!! | GTTTTGTTTGTGTGTTTGTT+AGG | - | chr4.2:19253094-19253113 | MS.gene90176:CDS | 30.0% |
| AAGCAAAAACTGCACCAAAT+TGG | - | chr4.2:19253430-19253449 | MS.gene90176:CDS | 35.0% | |
| ACATCGAGAATGATAACATC+AGG | + | chr4.2:19252994-19253013 | None:intergenic | 35.0% | |
| CCAAATTGGCAAAAGCAATT+AGG | - | chr4.2:19253444-19253463 | MS.gene90176:CDS | 35.0% | |
| GTACGCTTAAGTAGTTGAAA+TGG | - | chr4.2:19253275-19253294 | MS.gene90176:CDS | 35.0% | |
| ! | GATGGTAGTGTAAAATTGGT+TGG | - | chr4.2:19252937-19252956 | MS.gene90176:CDS | 35.0% |
| ! | TGGAGATGGTAGTGTAAAAT+TGG | - | chr4.2:19252933-19252952 | MS.gene90176:CDS | 35.0% |
| ! | TTTGTGTGTTTGTTAGGGAA+TGG | - | chr4.2:19253100-19253119 | MS.gene90176:CDS | 35.0% |
| !! | CCTAATTGCTTTTGCCAATT+TGG | + | chr4.2:19253447-19253466 | None:intergenic | 35.0% |
| AGAAGAACCAAAAGAAGCAG+CGG | + | chr4.2:19252839-19252858 | None:intergenic | 40.0% | |
| CAACAGAGACAGCAATAGTT+TGG | - | chr4.2:19253397-19253416 | MS.gene90176:CDS | 40.0% | |
| GCAGAACATTTAACTAGCTG+TGG | - | chr4.2:19253477-19253496 | MS.gene90176:CDS | 40.0% | |
| GGTTGTTGTAGGAAGTAACA+GGG | + | chr4.2:19252699-19252718 | None:intergenic | 40.0% | |
| ! | GCAGTTTTTGCTTCAGAAAC+AGG | + | chr4.2:19253423-19253442 | None:intergenic | 40.0% |
| ACACTAGCAGATGACACTTG+TGG | + | chr4.2:19253369-19253388 | None:intergenic | 45.0% | |
| AGCATCTGTGAAGAGGATTC+TGG | - | chr4.2:19253139-19253158 | MS.gene90176:CDS | 45.0% | |
| CGGTTGTTGTAGGAAGTAAC+AGG | + | chr4.2:19252700-19252719 | None:intergenic | 45.0% | |
| GCATTTCACCGTCATTTCTC+CGG | - | chr4.2:19252634-19252653 | MS.gene90176:CDS | 45.0% | |
| GTACAAGAGGTAGAGGAACA+CGG | + | chr4.2:19252733-19252752 | None:intergenic | 45.0% | |
| ! | CGTAGAAGTACAAGAGGTAG+AGG | + | chr4.2:19252740-19252759 | None:intergenic | 45.0% |
| ! | GTTTGTTAGGGAATGGTGTG+TGG | - | chr4.2:19253107-19253126 | MS.gene90176:CDS | 45.0% |
| ! | TAACGGCGTAGAAGTACAAG+AGG | + | chr4.2:19252746-19252765 | None:intergenic | 45.0% |
| ! | TTACGGAGTGATGGCGATAA+CGG | + | chr4.2:19252763-19252782 | None:intergenic | 45.0% |
| !!! | GCTTCTTTTGGTTCTTCTGC+CGG | - | chr4.2:19252841-19252860 | MS.gene90176:intron | 45.0% |
| AATGCGGGAACGGTTGTTGT+AGG | + | chr4.2:19252710-19252729 | None:intergenic | 50.0% | |
| AGATGCTGCGCAAGAGGTTT+CGG | - | chr4.2:19252960-19252979 | MS.gene90176:CDS | 50.0% | |
| AGGTAGAGGAACACGGAATG+CGG | + | chr4.2:19252726-19252745 | None:intergenic | 50.0% | |
| GATGTGCAGCATCTGTGAAG+AGG | - | chr4.2:19253132-19253151 | MS.gene90176:CDS | 50.0% | |
| TGTTAGGGAATGGTGTGTGG+TGG | - | chr4.2:19253110-19253129 | MS.gene90176:CDS | 50.0% | |
| ! | AGGAAGTAACAGGGCGTTTG+AGG | + | chr4.2:19252690-19252709 | None:intergenic | 50.0% |
| ! | TAACAGGGCGTTTGAGGTTG+TGG | + | chr4.2:19252684-19252703 | None:intergenic | 50.0% |
| !!! | TCTTTTGGTTCTTCTGCCGG+CGG | - | chr4.2:19252844-19252863 | MS.gene90176:intron | 50.0% |
| AGGAACACGGAATGCGGGAA+CGG | + | chr4.2:19252720-19252739 | None:intergenic | 55.0% | |
| CAGATGACACTTGTGGCTGC+AGG | + | chr4.2:19253362-19253381 | None:intergenic | 55.0% | |
| GCTGGAGTTGGAAATGGAGG+AGG | - | chr4.2:19252880-19252899 | MS.gene90176:intron | 55.0% | |
| GGAGTTGGAAATGGAGGAGG+AGG | - | chr4.2:19252883-19252902 | MS.gene90176:intron | 55.0% | |
| GGTAGAGGAACACGGAATGC+GGG | + | chr4.2:19252725-19252744 | None:intergenic | 55.0% | |
| GTTGGAAATGGAGGAGGAGG+TGG | - | chr4.2:19252886-19252905 | MS.gene90176:intron | 55.0% | |
| TGCGATAACCGTCACCACGA+CGG | - | chr4.2:19252591-19252610 | MS.gene90176:CDS | 55.0% | |
| ! | GAGGTGCTCCGGAGAAATGA+CGG | + | chr4.2:19252645-19252664 | None:intergenic | 55.0% |
| ! | GGTGCTGGAGTTGGAAATGG+AGG | - | chr4.2:19252877-19252896 | MS.gene90176:intron | 55.0% |
| ! | TCGAGCTCCGCTGCTTCTTT+TGG | - | chr4.2:19252829-19252848 | MS.gene90176:intron | 55.0% |
| ! | TCTGGTGGTGAGTCTGGAGA+TGG | - | chr4.2:19252919-19252938 | MS.gene90176:intron | 55.0% |
| !! | AGTGGTTCTGGTGGTGAGTC+TGG | - | chr4.2:19252913-19252932 | MS.gene90176:intron | 55.0% |
| !! | GGAAATGGAGGTGCTGGAGT+TGG | - | chr4.2:19252868-19252887 | MS.gene90176:intron | 55.0% |
| !! | GGAGGTGCTGGAGTTGGAAA+TGG | - | chr4.2:19252874-19252893 | MS.gene90176:intron | 55.0% |
| AAGTAGCATCTGCGCCGTCG+TGG | + | chr4.2:19252608-19252627 | None:intergenic | 60.0% | |
| AGAGCAGCGCGCGGAAGTTA+CGG | + | chr4.2:19252780-19252799 | None:intergenic | 60.0% | |
| AGCACCTCCATTTCCACCGC+CGG | + | chr4.2:19252863-19252882 | None:intergenic | 60.0% | |
| AGCTCGAAACGCAGCGCGTA+CGG | + | chr4.2:19252816-19252835 | None:intergenic | 60.0% | |
| GCGCGGAAGTTACGGAGTGA+TGG | + | chr4.2:19252772-19252791 | None:intergenic | 60.0% | |
| GGAAATGGAGGAGGAGGTGG+TGG | - | chr4.2:19252889-19252908 | MS.gene90176:intron | 60.0% | |
| GGTTGGAGATGCTGCGCAAG+AGG | - | chr4.2:19252954-19252973 | MS.gene90176:CDS | 60.0% | |
| GTGTTCGTAAGAGCAGCGCG+CGG | + | chr4.2:19252789-19252808 | None:intergenic | 60.0% | |
| TCTTCTGCCGGCGGTGGAAA+TGG | - | chr4.2:19252853-19252872 | MS.gene90176:intron | 60.0% | |
| ! | CAGGGCGTTTGAGGTTGTGG+CGG | + | chr4.2:19252681-19252700 | None:intergenic | 60.0% |
| !! | GGAGGTGGTGGTAGTGGTTC+TGG | - | chr4.2:19252901-19252920 | MS.gene90176:intron | 60.0% |
| !! | GGTGGTGGTAGTGGTTCTGG+TGG | - | chr4.2:19252904-19252923 | MS.gene90176:intron | 60.0% |
| !! | TTTGGTTCTTCTGCCGGCGG+TGG | - | chr4.2:19252847-19252866 | MS.gene90176:intron | 60.0% |
| CATCTGCGCCGTCGTGGTGA+CGG | + | chr4.2:19252602-19252621 | None:intergenic | 65.0% | |
| GAAACGCAGCGCGTACGGCA+CGG | + | chr4.2:19252811-19252830 | None:intergenic | 65.0% | |
| TCTGCCGGCGGTGGAAATGG+AGG | - | chr4.2:19252856-19252875 | MS.gene90176:intron | 65.0% | |
| ! | GAGTGTGCGGTGAGGTGCTC+CGG | + | chr4.2:19252656-19252675 | None:intergenic | 65.0% |
| ! | GGAGGAGGAGGTGGTGGTAG+TGG | - | chr4.2:19252895-19252914 | MS.gene90176:intron | 65.0% |
| ! | GGCGGTGGAAATGGAGGTGC+TGG | - | chr4.2:19252862-19252881 | MS.gene90176:intron | 65.0% |
| ! | GGCGTTTGAGGTTGTGGCGG+AGG | + | chr4.2:19252678-19252697 | None:intergenic | 65.0% |
| ! | GGTTGTGGCGGAGGAGTGTG+CGG | + | chr4.2:19252669-19252688 | None:intergenic | 65.0% |
| ! | TGGCGGAGGAGTGTGCGGTG+AGG | + | chr4.2:19252664-19252683 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19252583 | 19253519 | 19252583 | ID=MS.gene90176 |
| chr4.2 | mRNA | 19252583 | 19253519 | 19252583 | ID=MS.gene90176.t1;Parent=MS.gene90176 |
| chr4.2 | exon | 19253085 | 19253519 | 19253085 | ID=MS.gene90176.t1.exon1;Parent=MS.gene90176.t1 |
| chr4.2 | CDS | 19253085 | 19253519 | 19253085 | ID=cds.MS.gene90176.t1;Parent=MS.gene90176.t1 |
| chr4.2 | exon | 19252933 | 19252986 | 19252933 | ID=MS.gene90176.t1.exon2;Parent=MS.gene90176.t1 |
| chr4.2 | CDS | 19252933 | 19252986 | 19252933 | ID=cds.MS.gene90176.t1;Parent=MS.gene90176.t1 |
| chr4.2 | exon | 19252583 | 19252736 | 19252583 | ID=MS.gene90176.t1.exon3;Parent=MS.gene90176.t1 |
| chr4.2 | CDS | 19252583 | 19252736 | 19252583 | ID=cds.MS.gene90176.t1;Parent=MS.gene90176.t1 |
| Gene Sequence |
| Protein sequence |
