Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33133.t1 | XP_003588878.1 | 98 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 8.70E-275 | 955.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33133.t1 | Q5FV41 | 66.5 | 471 | 155 | 2 | 33 | 501 | 28 | 497 | 1.5e-179 | 630.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33133.t1 | G7I897 | 98.0 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 6.3e-275 | 955.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050654 | MS.gene33133 | 0.815179 | 1.06E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene33133 | 0.827383 | 1.61E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene33133 | 0.831305 | 1.80E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene33133 | 0.813393 | 2.62E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33133 | MS.gene30146 | PPI |
| MS.gene33133 | MS.gene027122 | PPI |
| MS.gene82704 | MS.gene33133 | PPI |
| MS.gene33133 | MS.gene94353 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33133.t1 | MTR_1g014250 | 98.016 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1004 |
| MS.gene33133.t1 | MTR_1g014250 | 97.889 | 379 | 7 | 1 | 126 | 503 | 3 | 381 | 0.0 | 742 |
| MS.gene33133.t1 | MTR_1g014220 | 44.635 | 466 | 208 | 3 | 35 | 497 | 27 | 445 | 1.90e-135 | 399 |
| MS.gene33133.t1 | MTR_5g007060 | 81.034 | 116 | 7 | 1 | 303 | 418 | 167 | 267 | 1.56e-51 | 176 |
| MS.gene33133.t1 | MTR_1g103530 | 31.445 | 353 | 209 | 10 | 40 | 370 | 93 | 434 | 5.79e-34 | 135 |
| MS.gene33133.t1 | MTR_3g008470 | 27.792 | 403 | 277 | 5 | 74 | 467 | 123 | 520 | 6.88e-30 | 123 |
| MS.gene33133.t1 | MTR_3g051190 | 33.333 | 198 | 127 | 2 | 266 | 462 | 295 | 488 | 9.43e-27 | 113 |
| MS.gene33133.t1 | MTR_3g051190 | 27.143 | 210 | 142 | 5 | 37 | 240 | 3 | 207 | 3.07e-15 | 78.6 |
| MS.gene33133.t1 | MTR_1g103530 | 30.182 | 275 | 170 | 8 | 109 | 370 | 4 | 269 | 1.41e-19 | 91.7 |
| MS.gene33133.t1 | MTR_2g031810 | 26.567 | 335 | 205 | 9 | 139 | 454 | 29 | 341 | 5.00e-16 | 80.1 |
| MS.gene33133.t1 | MTR_2g031770 | 30.921 | 152 | 95 | 3 | 75 | 216 | 46 | 197 | 4.51e-13 | 69.3 |
| MS.gene33133.t1 | MTR_1g103540 | 45.312 | 64 | 35 | 0 | 384 | 447 | 22 | 85 | 6.16e-11 | 60.1 |
| MS.gene33133.t1 | MTR_2g031790 | 29.710 | 138 | 97 | 0 | 317 | 454 | 181 | 318 | 8.15e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33133.t1 | AT5G25050 | 66.454 | 471 | 155 | 2 | 33 | 501 | 28 | 497 | 0.0 | 655 |
| MS.gene33133.t1 | AT1G79710 | 56.250 | 496 | 209 | 4 | 2 | 497 | 6 | 493 | 0.0 | 589 |
| MS.gene33133.t1 | AT1G79710 | 56.250 | 496 | 209 | 4 | 2 | 497 | 6 | 493 | 0.0 | 589 |
| MS.gene33133.t1 | AT5G25040 | 56.832 | 505 | 196 | 7 | 2 | 501 | 3 | 490 | 0.0 | 573 |
| MS.gene33133.t1 | AT5G25040 | 54.151 | 530 | 196 | 8 | 2 | 501 | 3 | 515 | 0.0 | 561 |
| MS.gene33133.t1 | AT5G25040 | 57.834 | 434 | 169 | 4 | 2 | 432 | 3 | 425 | 8.07e-178 | 508 |
| MS.gene33133.t1 | AT1G79710 | 56.927 | 397 | 167 | 2 | 3 | 399 | 6 | 398 | 1.49e-169 | 484 |
| MS.gene33133.t1 | AT5G25040 | 55.814 | 387 | 157 | 4 | 2 | 385 | 3 | 378 | 3.06e-152 | 439 |
| MS.gene33133.t1 | AT5G25040 | 60.227 | 352 | 129 | 4 | 152 | 501 | 1 | 343 | 1.92e-148 | 428 |
| MS.gene33133.t1 | AT5G10820 | 48.571 | 455 | 228 | 2 | 13 | 464 | 23 | 474 | 1.89e-142 | 419 |
| MS.gene33133.t1 | AT2G32040 | 32.870 | 432 | 260 | 11 | 62 | 477 | 6 | 423 | 1.59e-48 | 173 |
| MS.gene33133.t1 | AT2G32040 | 32.653 | 441 | 266 | 11 | 53 | 477 | 129 | 554 | 3.54e-48 | 175 |
| MS.gene33133.t1 | AT1G04570 | 27.861 | 402 | 270 | 8 | 74 | 465 | 109 | 500 | 1.55e-27 | 116 |
| MS.gene33133.t1 | AT2G33280 | 27.206 | 408 | 269 | 8 | 74 | 465 | 106 | 501 | 2.06e-27 | 115 |
| MS.gene33133.t1 | AT2G33280 | 27.407 | 405 | 266 | 8 | 77 | 465 | 1 | 393 | 7.26e-27 | 113 |
| MS.gene33133.t1 | AT5G54860 | 28.899 | 218 | 152 | 1 | 245 | 462 | 269 | 483 | 1.06e-24 | 107 |
| MS.gene33133.t1 | AT5G54860 | 29.808 | 208 | 139 | 5 | 37 | 240 | 3 | 207 | 6.02e-18 | 87.0 |
| MS.gene33133.t1 | AT1G04570 | 30.769 | 208 | 137 | 3 | 260 | 465 | 150 | 352 | 2.83e-21 | 96.3 |
| MS.gene33133.t1 | AT2G33280 | 29.279 | 222 | 146 | 4 | 246 | 465 | 107 | 319 | 6.75e-18 | 85.5 |
| MS.gene33133.t1 | AT1G64890 | 23.515 | 421 | 297 | 8 | 46 | 456 | 19 | 424 | 5.33e-15 | 77.4 |
Find 94 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTGTGTTGGCAATTT+TGG | 0.063315 | 1.3:-8392852 | MS.gene33133:CDS |
| CTTGGATTGTTAAGCCTTTA+TGG | 0.130713 | 1.3:-8394053 | MS.gene33133:CDS |
| GGTATAATATTGCTCCTAAA+AGG | 0.175539 | 1.3:+8390663 | None:intergenic |
| TCCAGCTGGACTTATAATTT+TGG | 0.227795 | 1.3:-8392508 | MS.gene33133:CDS |
| TCTTCTATTGGTGCACTATT+AGG | 0.233671 | 1.3:-8392707 | MS.gene33133:CDS |
| TTTGGAGTAGTTGTTGTTTA+TGG | 0.240305 | 1.3:-8394192 | MS.gene33133:CDS |
| TTGATGGTTGCAGGTTTATT+AGG | 0.248071 | 1.3:-8392914 | MS.gene33133:intron |
| TTGGATTGTTAAGCCTTTAT+GGG | 0.253679 | 1.3:-8394052 | MS.gene33133:CDS |
| GAACAAAGTTTGATAATCTT+TGG | 0.261678 | 1.3:-8390313 | MS.gene33133:CDS |
| GGCATCTTTGTTCACCTTAT+AGG | 0.269657 | 1.3:-8392671 | MS.gene33133:CDS |
| CAGTTGCTCTATGGTCTATC+AGG | 0.276942 | 1.3:-8390593 | MS.gene33133:CDS |
| AGTCAAAGGGTGTTAGAATA+TGG | 0.282434 | 1.3:-8394281 | MS.gene33133:CDS |
| GGTTTAGGTGGTGCTCTTGC+TGG | 0.292167 | 1.3:-8394159 | MS.gene33133:CDS |
| GGAAGAAGAATGAAAGAGTT+AGG | 0.300985 | 1.3:+8390218 | None:intergenic |
| TGTGCCTTTAGTTCTTCTAT+TGG | 0.305955 | 1.3:-8392719 | MS.gene33133:CDS |
| TGCCGGCATCCACAAAGTTT+TGG | 0.309039 | 1.3:+8392175 | None:intergenic |
| GGCTAACCATAGGGCCTATA+AGG | 0.323121 | 1.3:+8392657 | None:intergenic |
| AAGATTATCAAACTTTGTTC+TGG | 0.328960 | 1.3:+8390316 | None:intergenic |
| CATTCAGAGACTTACTCTTT+TGG | 0.332958 | 1.3:-8390619 | MS.gene33133:CDS |
| AATCCGGTATACCAAACTTT+AGG | 0.344820 | 1.3:+8390537 | None:intergenic |
| AGCTCAAAGCTTTGTCCATC+TGG | 0.346803 | 1.3:-8390440 | MS.gene33133:CDS |
| CTGGACTTCTTTCATCATCA+TGG | 0.374263 | 1.3:-8390373 | MS.gene33133:CDS |
| TATGGAATAAGTCAAGGTTT+AGG | 0.377756 | 1.3:-8394174 | MS.gene33133:CDS |
| GCCTTAACAGCAGGGAGTGC+TGG | 0.387976 | 1.3:-8392830 | MS.gene33133:CDS |
| TGTAGTCCACATAGCCTTGC+CGG | 0.387979 | 1.3:+8392158 | None:intergenic |
| CTTTGTCCATCTGGTATTGA+AGG | 0.389296 | 1.3:-8390431 | MS.gene33133:CDS |
| AGAAACCAAGGATGTTGAAT+TGG | 0.391325 | 1.3:-8390153 | MS.gene33133:CDS |
| GGTGGTGCTCTTGCTGGTGT+TGG | 0.393991 | 1.3:-8394153 | MS.gene33133:CDS |
| CTGGAATTACATCTATTCCT+TGG | 0.397255 | 1.3:-8394071 | MS.gene33133:CDS |
| ATGAGATTGAACCTAAAGTT+TGG | 0.398436 | 1.3:-8390548 | MS.gene33133:CDS |
| TCCAGCACTCCCTGCTGTTA+AGG | 0.406873 | 1.3:+8392829 | None:intergenic |
| ACCAATAAAACATTCCTTCA+AGG | 0.408629 | 1.3:+8392067 | None:intergenic |
| TGGACTTCTTTCATCATCAT+GGG | 0.415817 | 1.3:-8390372 | MS.gene33133:CDS |
| CTATTAGGATTCTCTATTAG+TGG | 0.425299 | 1.3:-8392692 | MS.gene33133:CDS |
| CTAGGTGCACCAAAACTTTG+TGG | 0.428219 | 1.3:-8392184 | MS.gene33133:intron |
| CGTAATCCTTTAGAGCGTAT+TGG | 0.433360 | 1.3:+8390642 | None:intergenic |
| TTTCTTCCACAGGAAAGTAT+AGG | 0.435044 | 1.3:-8390716 | MS.gene33133:intron |
| CTGAGTTTGAATATCCTTGA+AGG | 0.437719 | 1.3:-8392081 | MS.gene33133:CDS |
| TCAAATACCTGTGAGAAAGA+TGG | 0.438222 | 1.3:+8392024 | None:intergenic |
| TGTTCACCTTATAGGCCCTA+TGG | 0.452835 | 1.3:-8392663 | MS.gene33133:intron |
| CTTTCATCATCATGGGGTGG+TGG | 0.454756 | 1.3:-8390365 | MS.gene33133:CDS |
| AGACACCAATTCAACATCCT+TGG | 0.456982 | 1.3:+8390148 | None:intergenic |
| ATCACAACAAAGACGTAATC+CGG | 0.462520 | 1.3:+8390521 | None:intergenic |
| CACCAAAACTTTGTGGATGC+CGG | 0.471200 | 1.3:-8392177 | MS.gene33133:CDS |
| GTATAATATTGCTCCTAAAA+GGG | 0.472990 | 1.3:+8390664 | None:intergenic |
| ACCAAAATTATAAGTCCAGC+TGG | 0.476055 | 1.3:+8392507 | None:intergenic |
| GAACCTAAAGTTTGGTATAC+CGG | 0.482350 | 1.3:-8390540 | MS.gene33133:CDS |
| ATTATACCAATACGCTCTAA+AGG | 0.485902 | 1.3:-8390648 | MS.gene33133:CDS |
| TGCTATCAAGAGAAATGCAT+TGG | 0.489196 | 1.3:-8394224 | MS.gene33133:CDS |
| CAAATACCTGTGAGAAAGAT+GGG | 0.493656 | 1.3:+8392025 | None:intergenic |
| CATTGAAGAATCAAGATGTA+TGG | 0.496871 | 1.3:-8392137 | MS.gene33133:CDS |
| AGTTCAACCTTCTGAAGCAC+AGG | 0.498974 | 1.3:-8394100 | MS.gene33133:CDS |
| TCTCTTGTACACAGTGTTGA+TGG | 0.499772 | 1.3:-8390128 | MS.gene33133:CDS |
| CTGTGCAACACATGCATCAA+TGG | 0.501476 | 1.3:+8392787 | None:intergenic |
| TCTTCTTCCAAAAGAAAATG+TGG | 0.503749 | 1.3:-8390204 | MS.gene33133:CDS |
| TCTGAAGCACAGGTTTATGC+TGG | 0.507686 | 1.3:-8394090 | MS.gene33133:CDS |
| TGTCAGAAGCAAGGGAAGGA+TGG | 0.513050 | 1.3:+8392753 | None:intergenic |
| TCAGTAAGAAGACCCCATAA+AGG | 0.514757 | 1.3:+8394039 | None:intergenic |
| AAAAGAAAATGTGGATTCAA+AGG | 0.516295 | 1.3:-8390195 | MS.gene33133:CDS |
| AAATGAAGAAAGAAAGTCAA+AGG | 0.519772 | 1.3:-8394295 | MS.gene33133:CDS |
| GTCAGAAGCAAGGGAAGGAT+GGG | 0.531751 | 1.3:+8392754 | None:intergenic |
| GGTTTGATGACTATTCCAGC+TGG | 0.533339 | 1.3:-8392522 | MS.gene33133:CDS |
| AAATTGCCAACACAAGATGA+AGG | 0.535053 | 1.3:+8392855 | None:intergenic |
| GTTGTTTATGGAATAAGTCA+AGG | 0.536630 | 1.3:-8394180 | MS.gene33133:CDS |
| TGCACCAATAGAAGAACTAA+AGG | 0.537673 | 1.3:+8392715 | None:intergenic |
| AACTTTGCATGTCAGAAGCA+AGG | 0.539901 | 1.3:+8392744 | None:intergenic |
| CATAAAGGCTTAACAATCCA+AGG | 0.539921 | 1.3:+8394054 | None:intergenic |
| AAATGACTAGTAGACTAAAG+TGG | 0.544535 | 1.3:-8390481 | MS.gene33133:CDS |
| TGAAAACCTTCATCTTGTGT+TGG | 0.550037 | 1.3:-8392861 | MS.gene33133:CDS |
| CTAATGTCAATTGATAATGC+TGG | 0.554898 | 1.3:-8390392 | MS.gene33133:CDS |
| AATGAAGAAAGAAAGTCAAA+GGG | 0.555190 | 1.3:-8394294 | MS.gene33133:CDS |
| CTTCTTTCATCATCATGGGG+TGG | 0.567293 | 1.3:-8390368 | MS.gene33133:CDS |
| TGGATTGTTAAGCCTTTATG+GGG | 0.567662 | 1.3:-8394051 | MS.gene33133:CDS |
| GGACTTCTTTCATCATCATG+GGG | 0.573124 | 1.3:-8390371 | MS.gene33133:CDS |
| ACTTTGCATGTCAGAAGCAA+GGG | 0.576270 | 1.3:+8392745 | None:intergenic |
| AAACTTTGTGGATGCCGGCA+AGG | 0.577788 | 1.3:-8392172 | MS.gene33133:CDS |
| GATATTCAAACTCAGTGCAA+AGG | 0.582025 | 1.3:+8392089 | None:intergenic |
| GCATAAACCTGTGCTTCAGA+AGG | 0.585483 | 1.3:+8394093 | None:intergenic |
| TTATTGGTATACAGACTCAA+AGG | 0.588010 | 1.3:-8392052 | MS.gene33133:CDS |
| GGAATAAGTCAAGGTTTAGG+TGG | 0.592318 | 1.3:-8394171 | MS.gene33133:CDS |
| ATGGAAAGATAACAAAAGCA+TGG | 0.598685 | 1.3:+8392883 | None:intergenic |
| AACAGCAGGGAGTGCTGGAG+TGG | 0.601674 | 1.3:-8392825 | MS.gene33133:CDS |
| GGATGGCCCATCTTTCTCAC+AGG | 0.602106 | 1.3:-8392031 | MS.gene33133:intron |
| AATGTTCCTTCAATACCAGA+TGG | 0.602463 | 1.3:+8390425 | None:intergenic |
| AAAGAGTTAGGATCAACTCT+AGG | 0.610731 | 1.3:+8390230 | None:intergenic |
| TGGTATACAGACTCAAAGGA+TGG | 0.620432 | 1.3:-8392048 | MS.gene33133:CDS |
| AGAAAATGTGGATTCAAAGG+TGG | 0.627950 | 1.3:-8390192 | MS.gene33133:CDS |
| TTTGAGCTGAGTACAAGCAT+AGG | 0.628993 | 1.3:+8390455 | None:intergenic |
| AGTTGCTCTATGGTCTATCA+GGG | 0.638082 | 1.3:-8390592 | MS.gene33133:CDS |
| TATTGACACTTCAGAAACCA+AGG | 0.638956 | 1.3:-8390165 | MS.gene33133:CDS |
| TGGATGCCGGCAAGGCTATG+TGG | 0.641291 | 1.3:-8392164 | MS.gene33133:CDS |
| TGAAGAATCAAGATGTATGG+AGG | 0.648173 | 1.3:-8392134 | MS.gene33133:CDS |
| TGCATGTCAGAAGCAAGGGA+AGG | 0.650191 | 1.3:+8392749 | None:intergenic |
| GATAAGTACATGTATAGACA+AGG | 0.690907 | 1.3:+8392111 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGCAATAGTTTATATAATT+TGG | - | chr1.3:8393627-8393646 | MS.gene33133:intron | 15.0% |
| !! | TTGATGTTTATCAAATTAAA+AGG | - | chr1.3:8390610-8390629 | MS.gene33133:CDS | 15.0% |
| !!! | GTATGATATTTTTTACTTTT+TGG | - | chr1.3:8393177-8393196 | MS.gene33133:intron | 15.0% |
| !!! | TTTTAAAAAATTACTAAGCA+TGG | + | chr1.3:8393602-8393621 | None:intergenic | 15.0% |
| !! | ATATTTATAGATAAGTTCAC+TGG | - | chr1.3:8393095-8393114 | MS.gene33133:intron | 20.0% |
| !! | ATTAGGGAAGTTAAAAATTA+AGG | - | chr1.3:8393228-8393247 | MS.gene33133:intron | 20.0% |
| !! | ATTATATGTGTTTCTTATAG+TGG | - | chr1.3:8391418-8391437 | MS.gene33133:intron | 20.0% |
| !! | TATAGCATCATATATATTTG+TGG | - | chr1.3:8393333-8393352 | MS.gene33133:intron | 20.0% |
| !!! | AAAGTTTTTTCATTCAACTA+GGG | + | chr1.3:8393653-8393672 | None:intergenic | 20.0% |
| !!! | TAAAAGAAGTTTTGTATATG+AGG | + | chr1.3:8392001-8392020 | None:intergenic | 20.0% |
| !!! | TAAAGTTTTTTCATTCAACT+AGG | + | chr1.3:8393654-8393673 | None:intergenic | 20.0% |
| !!! | TGATAGATTTTTTTCTCATA+GGG | - | chr1.3:8391911-8391930 | MS.gene33133:intron | 20.0% |
| !!! | TTAATTTGATAAACATCAAG+AGG | + | chr1.3:8390609-8390628 | None:intergenic | 20.0% |
| ! | AAAAGAAAATGTGGATTCAA+AGG | - | chr1.3:8394268-8394287 | MS.gene33133:CDS | 25.0% |
| ! | AAAAGTAATAGTTATGAGCA+GGG | + | chr1.3:8391028-8391047 | None:intergenic | 25.0% |
| ! | AAATGAAGAAAGAAAGTCAA+AGG | - | chr1.3:8390168-8390187 | MS.gene33133:CDS | 25.0% |
| ! | AAGATTATCAAACTTTGTTC+TGG | + | chr1.3:8394150-8394169 | None:intergenic | 25.0% |
| ! | AAGCTCGATATCTTAAAATT+CGG | - | chr1.3:8390692-8390711 | MS.gene33133:CDS | 25.0% |
| ! | AATGAAGAAAGAAAGTCAAA+GGG | - | chr1.3:8390169-8390188 | MS.gene33133:CDS | 25.0% |
| ! | ATAAGCACGTAATACTTATA+TGG | + | chr1.3:8392210-8392229 | None:intergenic | 25.0% |
| ! | ATATAAGTATTACGTGCTTA+TGG | - | chr1.3:8392209-8392228 | MS.gene33133:intron | 25.0% |
| ! | CTGAAAAAATGGTTATAAGA+GGG | + | chr1.3:8390770-8390789 | None:intergenic | 25.0% |
| ! | CTTAACACAATAGTAATTGA+TGG | - | chr1.3:8390815-8390834 | MS.gene33133:intron | 25.0% |
| ! | GAATTTCATGAAGTTTAGAT+TGG | + | chr1.3:8392577-8392596 | None:intergenic | 25.0% |
| ! | GAGAATGAAAAAATCAGATT+AGG | + | chr1.3:8392260-8392279 | None:intergenic | 25.0% |
| ! | GTAAACAAATTAGGATCTAA+GGG | - | chr1.3:8391074-8391093 | MS.gene33133:intron | 25.0% |
| ! | GTACTTAGAAGAAAACATTA+GGG | - | chr1.3:8393212-8393231 | MS.gene33133:intron | 25.0% |
| ! | GTATAATATTGCTCCTAAAA+GGG | + | chr1.3:8393802-8393821 | None:intergenic | 25.0% |
| ! | GTTAAAAATTAAGGAATCCA+AGG | - | chr1.3:8393237-8393256 | MS.gene33133:intron | 25.0% |
| ! | TAAACAAATTAGGATCTAAG+GGG | - | chr1.3:8391075-8391094 | MS.gene33133:intron | 25.0% |
| ! | TAAGTTAATCTGGCATTAAT+CGG | - | chr1.3:8390723-8390742 | MS.gene33133:intron | 25.0% |
| ! | TCATGAATACAAAAGACATT+TGG | + | chr1.3:8392814-8392833 | None:intergenic | 25.0% |
| ! | TCTGATTACTCTTCTAATTT+AGG | - | chr1.3:8392848-8392867 | MS.gene33133:CDS | 25.0% |
| ! | TGTACTTAGAAGAAAACATT+AGG | - | chr1.3:8393211-8393230 | MS.gene33133:intron | 25.0% |
| ! | TTTATCTGAATGCTGAAAAT+GGG | - | chr1.3:8391108-8391127 | MS.gene33133:intron | 25.0% |
| !! | AAATGTTGATGGAATAACAA+GGG | - | chr1.3:8393000-8393019 | MS.gene33133:intron | 25.0% |
| !! | AATCTTTTCACCAAAAGTTA+CGG | - | chr1.3:8393148-8393167 | MS.gene33133:intron | 25.0% |
| !! | ATCAGATTAGGTGTTATATT+AGG | + | chr1.3:8392248-8392267 | None:intergenic | 25.0% |
| !! | GAACAAAGTTTGATAATCTT+TGG | - | chr1.3:8394150-8394169 | MS.gene33133:CDS | 25.0% |
| !! | TAACATCTTATTTATCCTTG+AGG | + | chr1.3:8393400-8393419 | None:intergenic | 25.0% |
| !! | TCAGATTAGGTGTTATATTA+GGG | + | chr1.3:8392247-8392266 | None:intergenic | 25.0% |
| !! | TGAAAAACTTTGCAAGTTTT+AGG | + | chr1.3:8391851-8391870 | None:intergenic | 25.0% |
| !! | TTTGAATCCACATTTTCTTT+TGG | + | chr1.3:8394269-8394288 | None:intergenic | 25.0% |
| !!! | ATAGATTTTTTTCTCATAGG+GGG | - | chr1.3:8391913-8391932 | MS.gene33133:intron | 25.0% |
| !!! | ATCTGATTTTTTCATTCTCT+AGG | - | chr1.3:8392261-8392280 | MS.gene33133:intron | 25.0% |
| !!! | CTGATAGATTTTTTTCTCAT+AGG | - | chr1.3:8391910-8391929 | MS.gene33133:intron | 25.0% |
| !!! | GATAGATTTTTTTCTCATAG+GGG | - | chr1.3:8391912-8391931 | MS.gene33133:intron | 25.0% |
| !!! | TGGTTTTATAATGTTGAGTT+AGG | + | chr1.3:8392881-8392900 | None:intergenic | 25.0% |
| AAAACCAACTTGTAAAGTGA+GGG | - | chr1.3:8392894-8392913 | MS.gene33133:CDS | 30.0% | |
| AAACAAATTAGGATCTAAGG+GGG | - | chr1.3:8391076-8391095 | MS.gene33133:intron | 30.0% | |
| AAATGACTAGTAGACTAAAG+TGG | - | chr1.3:8393982-8394001 | MS.gene33133:intron | 30.0% | |
| AAGAGGTTCACAACTTATAA+AGG | + | chr1.3:8390592-8390611 | None:intergenic | 30.0% | |
| AAGTTAATCTGGCATTAATC+GGG | - | chr1.3:8390724-8390743 | MS.gene33133:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr1.3:8393538-8393557 | None:intergenic | 30.0% | |
| ACCAATAAAACATTCCTTCA+AGG | + | chr1.3:8392399-8392418 | None:intergenic | 30.0% | |
| AGACTACTATATTAGTGAAG+CGG | + | chr1.3:8391513-8391532 | None:intergenic | 30.0% | |
| AGAGGTTCACAACTTATAAA+GGG | + | chr1.3:8390591-8390610 | None:intergenic | 30.0% | |
| AGCTCGATATCTTAAAATTC+GGG | - | chr1.3:8390693-8390712 | MS.gene33133:CDS | 30.0% | |
| ATACCAGCAAAAATGAAGTA+AGG | + | chr1.3:8390481-8390500 | None:intergenic | 30.0% | |
| ATCTCTTCATCAATTCTTGT+AGG | + | chr1.3:8391483-8391502 | None:intergenic | 30.0% | |
| ATGAGATTGAACCTAAAGTT+TGG | - | chr1.3:8393915-8393934 | MS.gene33133:intron | 30.0% | |
| ATGGAAAGATAACAAAAGCA+TGG | + | chr1.3:8391583-8391602 | None:intergenic | 30.0% | |
| ATTATACCAATACGCTCTAA+AGG | - | chr1.3:8393815-8393834 | MS.gene33133:intron | 30.0% | |
| CAAAAGTAATAGTTATGAGC+AGG | + | chr1.3:8391029-8391048 | None:intergenic | 30.0% | |
| CATTGAAGAATCAAGATGTA+TGG | - | chr1.3:8392326-8392345 | MS.gene33133:intron | 30.0% | |
| CCTGAAAAAATGGTTATAAG+AGG | + | chr1.3:8390771-8390790 | None:intergenic | 30.0% | |
| CTATTAGGATTCTCTATTAG+TGG | - | chr1.3:8391771-8391790 | MS.gene33133:intron | 30.0% | |
| GATAAGTACATGTATAGACA+AGG | + | chr1.3:8392355-8392374 | None:intergenic | 30.0% | |
| GATGTTAAATCCTTGTGATT+AGG | - | chr1.3:8393413-8393432 | MS.gene33133:intron | 30.0% | |
| GATTAATGCCAGATTAACTT+AGG | + | chr1.3:8390724-8390743 | None:intergenic | 30.0% | |
| GGAAGAAAAGAAAAATCAAG+AGG | + | chr1.3:8391830-8391849 | None:intergenic | 30.0% | |
| GGTAAACAAATTAGGATCTA+AGG | - | chr1.3:8391073-8391092 | MS.gene33133:intron | 30.0% | |
| GGTATAATATTGCTCCTAAA+AGG | + | chr1.3:8393803-8393822 | None:intergenic | 30.0% | |
| GTGATTTCACAATGTCAATA+TGG | + | chr1.3:8392169-8392188 | None:intergenic | 30.0% | |
| GTTGTTTATGGAATAAGTCA+AGG | - | chr1.3:8390283-8390302 | MS.gene33133:CDS | 30.0% | |
| GTTTATCTGAATGCTGAAAA+TGG | - | chr1.3:8391107-8391126 | MS.gene33133:intron | 30.0% | |
| TAAAACCAACTTGTAAAGTG+AGG | - | chr1.3:8392893-8392912 | MS.gene33133:CDS | 30.0% | |
| TAAGATGTGACCTGAAAAAA+TGG | + | chr1.3:8390781-8390800 | None:intergenic | 30.0% | |
| TATGGAATAAGTCAAGGTTT+AGG | - | chr1.3:8390289-8390308 | MS.gene33133:CDS | 30.0% | |
| TCTTCTTCCAAAAGAAAATG+TGG | - | chr1.3:8394259-8394278 | MS.gene33133:CDS | 30.0% | |
| TTATCTGAATGCTGAAAATG+GGG | - | chr1.3:8391109-8391128 | MS.gene33133:intron | 30.0% | |
| TTATTCAGTACACTTGTTCT+AGG | - | chr1.3:8391180-8391199 | MS.gene33133:intron | 30.0% | |
| TTATTGGTATACAGACTCAA+AGG | - | chr1.3:8392411-8392430 | MS.gene33133:intron | 30.0% | |
| TTGGATTGTTAAGCCTTTAT+GGG | - | chr1.3:8390411-8390430 | MS.gene33133:CDS | 30.0% | |
| TTTCTCACAGGTATTTGATT+AGG | - | chr1.3:8392444-8392463 | MS.gene33133:intron | 30.0% | |
| ! | AAATGAAGTAAGGTTTTCTC+CGG | + | chr1.3:8390471-8390490 | None:intergenic | 30.0% |
| ! | ACAAAACTTCTTTTACAGAC+AGG | - | chr1.3:8392006-8392025 | MS.gene33133:intron | 30.0% |
| ! | ACTGATGTTCTTCCTATTTT+TGG | - | chr1.3:8390442-8390461 | MS.gene33133:CDS | 30.0% |
| ! | AGCATTTTAAACCATTCACT+TGG | + | chr1.3:8390223-8390242 | None:intergenic | 30.0% |
| ! | ATATTTTCAATCAGCTCAGT+CGG | - | chr1.3:8393774-8393793 | MS.gene33133:intron | 30.0% |
| ! | ATCTTTTCACCAAAAGTTAC+GGG | - | chr1.3:8393149-8393168 | MS.gene33133:intron | 30.0% |
| ! | CAAATGTTGATGGAATAACA+AGG | - | chr1.3:8392999-8393018 | MS.gene33133:intron | 30.0% |
| ! | CTGCTCATAACTATTACTTT+TGG | - | chr1.3:8391027-8391046 | MS.gene33133:intron | 30.0% |
| ! | TCCTTGAAGGAATGTTTTAT+TGG | - | chr1.3:8392395-8392414 | MS.gene33133:intron | 30.0% |
| ! | TCTTTCTATTTTCCTCTGAT+CGG | - | chr1.3:8392085-8392104 | MS.gene33133:CDS | 30.0% |
| ! | TTAGTCAAAGGGTTTAAAAC+CGG | - | chr1.3:8390882-8390901 | MS.gene33133:intron | 30.0% |
| ! | TTCTCTATGCTCTCTTTTTA+AGG | + | chr1.3:8392777-8392796 | None:intergenic | 30.0% |
| ! | TTCTGATCTTTGTTCTAGAT+GGG | - | chr1.3:8390512-8390531 | MS.gene33133:CDS | 30.0% |
| ! | TTTCTGATCTTTGTTCTAGA+TGG | - | chr1.3:8390511-8390530 | MS.gene33133:CDS | 30.0% |
| ! | TTTGAGACTGTTTGAGAATT+GGG | - | chr1.3:8393483-8393502 | MS.gene33133:intron | 30.0% |
| !! | AAACCTTACTTCATTTTTGC+TGG | - | chr1.3:8390475-8390494 | MS.gene33133:CDS | 30.0% |
| !! | CAAGGATTTTGATATCTACT+AGG | - | chr1.3:8390933-8390952 | MS.gene33133:intron | 30.0% |
| !! | CTAATGTCAATTGATAATGC+TGG | - | chr1.3:8394071-8394090 | MS.gene33133:CDS | 30.0% |
| !! | GTGTTGATGGTAATACATAA+TGG | - | chr1.3:8394348-8394367 | MS.gene33133:CDS | 30.0% |
| !! | TTTGGAGTAGTTGTTGTTTA+TGG | - | chr1.3:8390271-8390290 | MS.gene33133:CDS | 30.0% |
| !!! | ATGCATTGGAGTTTTGTTTT+TGG | - | chr1.3:8390253-8390272 | MS.gene33133:CDS | 30.0% |
| !!! | CCTCTTATAACCATTTTTTC+AGG | - | chr1.3:8390768-8390787 | MS.gene33133:intron | 30.0% |
| !!! | TCATTTTTTTGCTCAGATTC+TGG | + | chr1.3:8390154-8390173 | None:intergenic | 30.0% |
| !!! | TTCTTCCTATTTTTGGATAC+CGG | - | chr1.3:8390449-8390468 | MS.gene33133:CDS | 30.0% |
| !!! | TTTGGTTAGCGATTTTGATT+CGG | - | chr1.3:8394168-8394187 | MS.gene33133:CDS | 30.0% |
| AAAATCAAGAGGCTAACCAT+AGG | + | chr1.3:8391819-8391838 | None:intergenic | 35.0% | |
| AAAGAGTTAGGATCAACTCT+AGG | + | chr1.3:8394236-8394255 | None:intergenic | 35.0% | |
| AAATCAAGAGGCTAACCATA+GGG | + | chr1.3:8391818-8391837 | None:intergenic | 35.0% | |
| AAATGCAAGACAAAGGTTAC+TGG | + | chr1.3:8393729-8393748 | None:intergenic | 35.0% | |
| AAATTGCCAACACAAGATGA+AGG | + | chr1.3:8391611-8391630 | None:intergenic | 35.0% | |
| AATCCGGTATACCAAACTTT+AGG | + | chr1.3:8393929-8393948 | None:intergenic | 35.0% | |
| AATGTTCCTTCAATACCAGA+TGG | + | chr1.3:8394041-8394060 | None:intergenic | 35.0% | |
| ACCAAAATTATAAGTCCAGC+TGG | + | chr1.3:8391959-8391978 | None:intergenic | 35.0% | |
| ACCATTGTTCCATAACATCT+TGG | + | chr1.3:8391155-8391174 | None:intergenic | 35.0% | |
| ACTAAAAACAGCATGCAAAG+TGG | + | chr1.3:8394212-8394231 | None:intergenic | 35.0% | |
| ACTTAGATACTATGGGAGAT+TGG | - | chr1.3:8390855-8390874 | MS.gene33133:intron | 35.0% | |
| AGAAAATGTGGATTCAAAGG+TGG | - | chr1.3:8394271-8394290 | MS.gene33133:CDS | 35.0% | |
| AGAAACCAAGGATGTTGAAT+TGG | - | chr1.3:8394310-8394329 | MS.gene33133:CDS | 35.0% | |
| AGATTGGACTCTTAGTCAAA+GGG | - | chr1.3:8390871-8390890 | MS.gene33133:intron | 35.0% | |
| ATATATATTTGTGGCTGCCA+TGG | - | chr1.3:8393342-8393361 | MS.gene33133:intron | 35.0% | |
| ATCACAACAAAGACGTAATC+CGG | + | chr1.3:8393945-8393964 | None:intergenic | 35.0% | |
| ATGAAACCTATACTTTCCTG+TGG | + | chr1.3:8393756-8393775 | None:intergenic | 35.0% | |
| ATGTCTCAATGATTGCAATG+AGG | + | chr1.3:8391238-8391257 | None:intergenic | 35.0% | |
| ATTCTCAGAAACATCGTAGT+AGG | - | chr1.3:8392125-8392144 | MS.gene33133:CDS | 35.0% | |
| CAAAAAGACTCCTAATCACA+AGG | + | chr1.3:8393426-8393445 | None:intergenic | 35.0% | |
| CAAATACCTGTGAGAAAGAT+GGG | + | chr1.3:8392441-8392460 | None:intergenic | 35.0% | |
| CAATACGAAGAACTAAGACA+TGG | - | chr1.3:8390989-8391008 | MS.gene33133:intron | 35.0% | |
| CATAAAGGCTTAACAATCCA+AGG | + | chr1.3:8390412-8390431 | None:intergenic | 35.0% | |
| CCATTGTTCCATAACATCTT+GGG | + | chr1.3:8391154-8391173 | None:intergenic | 35.0% | |
| CCTTTGCACTTAGATACTAT+GGG | - | chr1.3:8390848-8390867 | MS.gene33133:intron | 35.0% | |
| CTGAGTTTGAATATCCTTGA+AGG | - | chr1.3:8392382-8392401 | MS.gene33133:intron | 35.0% | |
| CTGGAATTACATCTATTCCT+TGG | - | chr1.3:8390392-8390411 | MS.gene33133:CDS | 35.0% | |
| CTTAGATCGCAAGGATATAA+GGG | - | chr1.3:8391278-8391297 | MS.gene33133:intron | 35.0% | |
| CTTATTTATCCTTGAGGTAG+AGG | + | chr1.3:8393394-8393413 | None:intergenic | 35.0% | |
| CTTGGATTGTTAAGCCTTTA+TGG | - | chr1.3:8390410-8390429 | MS.gene33133:CDS | 35.0% | |
| GAACCTAAAGTTTGGTATAC+CGG | - | chr1.3:8393923-8393942 | MS.gene33133:intron | 35.0% | |
| GATATTCAAACTCAGTGCAA+AGG | + | chr1.3:8392377-8392396 | None:intergenic | 35.0% | |
| GCATTTCATCTTCCCTTATA+TGG | - | chr1.3:8392506-8392525 | MS.gene33133:CDS | 35.0% | |
| GGAAGAAGAATGAAAGAGTT+AGG | + | chr1.3:8394248-8394267 | None:intergenic | 35.0% | |
| GTCTTGCATCAAATGATAGA+AGG | + | chr1.3:8392627-8392646 | None:intergenic | 35.0% | |
| TAGAAGGGTTATAAACGAGA+AGG | - | chr1.3:8391390-8391409 | MS.gene33133:intron | 35.0% | |
| TAGATAAGTTCACTGGAACT+TGG | - | chr1.3:8393102-8393121 | MS.gene33133:intron | 35.0% | |
| TATTGACACTTCAGAAACCA+AGG | - | chr1.3:8394298-8394317 | MS.gene33133:CDS | 35.0% | |
| TCAAATACCTGTGAGAAAGA+TGG | + | chr1.3:8392442-8392461 | None:intergenic | 35.0% | |
| TCCTTTGCACTTAGATACTA+TGG | - | chr1.3:8390847-8390866 | MS.gene33133:intron | 35.0% | |
| TCTCGTTTATAACCCTTCTA+AGG | + | chr1.3:8391390-8391409 | None:intergenic | 35.0% | |
| TCTTCTATTGGTGCACTATT+AGG | - | chr1.3:8391756-8391775 | MS.gene33133:intron | 35.0% | |
| TGAAAACCTTCATCTTGTGT+TGG | - | chr1.3:8391602-8391621 | MS.gene33133:intron | 35.0% | |
| TGAAATTCTCATGTCTACTG+TGG | - | chr1.3:8392589-8392608 | MS.gene33133:intron | 35.0% | |
| TGAAGAATCAAGATGTATGG+AGG | - | chr1.3:8392329-8392348 | MS.gene33133:intron | 35.0% | |
| TGCACCAATAGAAGAACTAA+AGG | + | chr1.3:8391751-8391770 | None:intergenic | 35.0% | |
| TGCTATCAAGAGAAATGCAT+TGG | - | chr1.3:8390239-8390258 | MS.gene33133:CDS | 35.0% | |
| TGGAAGAAAATGCAAGACAA+AGG | + | chr1.3:8393736-8393755 | None:intergenic | 35.0% | |
| TGGACTTCTTTCATCATCAT+GGG | - | chr1.3:8394091-8394110 | MS.gene33133:CDS | 35.0% | |
| TGGATTGTTAAGCCTTTATG+GGG | - | chr1.3:8390412-8390431 | MS.gene33133:CDS | 35.0% | |
| TTCAATAAGCTCTCCATGAT+AGG | - | chr1.3:8393557-8393576 | MS.gene33133:intron | 35.0% | |
| TTCATGAGACAACCTTAGAA+GGG | - | chr1.3:8391375-8391394 | MS.gene33133:intron | 35.0% | |
| TTTCATGAGACAACCTTAGA+AGG | - | chr1.3:8391374-8391393 | MS.gene33133:intron | 35.0% | |
| TTTCTCCGGTATCCAAAAAT+AGG | + | chr1.3:8390457-8390476 | None:intergenic | 35.0% | |
| TTTGCATCAAGTGAGTTAGA+AGG | - | chr1.3:8392693-8392712 | MS.gene33133:CDS | 35.0% | |
| ! | AAGGGTTTTACTTATAGCAG+TGG | - | chr1.3:8393018-8393037 | MS.gene33133:intron | 35.0% |
| ! | ACACAAGATGAAGGTTTTCA+TGG | + | chr1.3:8391602-8391621 | None:intergenic | 35.0% |
| ! | CATTCAGAGACTTACTCTTT+TGG | - | chr1.3:8393844-8393863 | MS.gene33133:intron | 35.0% |
| ! | CTTGTGATTAGGAGTCTTTT+TGG | - | chr1.3:8393424-8393443 | MS.gene33133:intron | 35.0% |
| ! | GAATTTTTGTCGCTCATTGA+TGG | - | chr1.3:8391533-8391552 | MS.gene33133:intron | 35.0% |
| ! | GTTTTTGCATTCCAAGTGAA+TGG | - | chr1.3:8390209-8390228 | MS.gene33133:CDS | 35.0% |
| ! | TCATTTGTACTTTTGCCAAG+TGG | + | chr1.3:8393303-8393322 | None:intergenic | 35.0% |
| ! | TCCAGCTGGACTTATAATTT+TGG | - | chr1.3:8391955-8391974 | MS.gene33133:intron | 35.0% |
| ! | TTGACTCGAAATAAAGCTCT+CGG | + | chr1.3:8392742-8392761 | None:intergenic | 35.0% |
| ! | TTGATGGTTGCAGGTTTATT+AGG | - | chr1.3:8391549-8391568 | MS.gene33133:intron | 35.0% |
| ! | TTTCTTCCACAGGAAAGTAT+AGG | - | chr1.3:8393747-8393766 | MS.gene33133:intron | 35.0% |
| !! | AGTCAAAGGGTGTTAGAATA+TGG | - | chr1.3:8390182-8390201 | MS.gene33133:CDS | 35.0% |
| !! | CTTTGAGACTGTTTGAGAAT+TGG | - | chr1.3:8393482-8393501 | MS.gene33133:intron | 35.0% |
| !! | GCTGGACTTATAATTTTGGT+CGG | - | chr1.3:8391959-8391978 | MS.gene33133:intron | 35.0% |
| !! | TCATCTTGTGTTGGCAATTT+TGG | - | chr1.3:8391611-8391630 | MS.gene33133:intron | 35.0% |
| !! | TGTGCCTTTAGTTCTTCTAT+TGG | - | chr1.3:8391744-8391763 | MS.gene33133:intron | 35.0% |
| !! | TGTGTTTCTTATAGTGGATG+TGG | - | chr1.3:8391424-8391443 | MS.gene33133:intron | 35.0% |
| AAAACCGGTCTTTGAGCATT+TGG | - | chr1.3:8390897-8390916 | MS.gene33133:intron | 40.0% | |
| AAACCGGTCTTTGAGCATTT+GGG | - | chr1.3:8390898-8390917 | MS.gene33133:intron | 40.0% | |
| AACTTTGCATGTCAGAAGCA+AGG | + | chr1.3:8391722-8391741 | None:intergenic | 40.0% | |
| AAGTGGTGCAATTGTTGTGA+AGG | - | chr1.3:8392531-8392550 | MS.gene33133:CDS | 40.0% | |
| AATGGGGTCATTATCTCCTT+TGG | - | chr1.3:8391125-8391144 | MS.gene33133:intron | 40.0% | |
| ACTTGTAAGCGCGGTTTATA+GGG | - | chr1.3:8390666-8390685 | MS.gene33133:CDS | 40.0% | |
| ACTTTGCATGTCAGAAGCAA+GGG | + | chr1.3:8391721-8391740 | None:intergenic | 40.0% | |
| AGAACGTGGACAAATGTTGA+TGG | - | chr1.3:8392989-8393008 | MS.gene33133:intron | 40.0% | |
| AGACACCAATTCAACATCCT+TGG | + | chr1.3:8394318-8394337 | None:intergenic | 40.0% | |
| AGTTCACTGGAACTTGGTAT+TGG | - | chr1.3:8393108-8393127 | MS.gene33133:intron | 40.0% | |
| AGTTGCTCTATGGTCTATCA+GGG | - | chr1.3:8393871-8393890 | MS.gene33133:intron | 40.0% | |
| ATAACATCTTGGGAAGCCAA+AGG | + | chr1.3:8391144-8391163 | None:intergenic | 40.0% | |
| ATAGCCCTCACTTTACAAGT+TGG | + | chr1.3:8392901-8392920 | None:intergenic | 40.0% | |
| ATATAAGGGACACAGTCTCT+TGG | - | chr1.3:8391292-8391311 | MS.gene33133:intron | 40.0% | |
| ATTTATCCTTGAGGTAGAGG+CGG | + | chr1.3:8393391-8393410 | None:intergenic | 40.0% | |
| CCCAAGATGTTATGGAACAA+TGG | - | chr1.3:8391151-8391170 | MS.gene33133:intron | 40.0% | |
| CCCATAGTATCTAAGTGCAA+AGG | + | chr1.3:8390851-8390870 | None:intergenic | 40.0% | |
| CGTGCTTATGGTAATTTCCA+TGG | - | chr1.3:8392221-8392240 | MS.gene33133:intron | 40.0% | |
| CTCTCGGAGTACATGTAAAT+GGG | + | chr1.3:8392726-8392745 | None:intergenic | 40.0% | |
| CTGGACTTCTTTCATCATCA+TGG | - | chr1.3:8394090-8394109 | MS.gene33133:CDS | 40.0% | |
| GAGATTGGACTCTTAGTCAA+AGG | - | chr1.3:8390870-8390889 | MS.gene33133:intron | 40.0% | |
| GCAATTGTTGTGAAGGTAGT+GGG | - | chr1.3:8392538-8392557 | MS.gene33133:intron | 40.0% | |
| GCTTAGATCGCAAGGATATA+AGG | - | chr1.3:8391277-8391296 | MS.gene33133:intron | 40.0% | |
| GGAATAAGTCAAGGTTTAGG+TGG | - | chr1.3:8390292-8390311 | MS.gene33133:CDS | 40.0% | |
| GGACTTCTTTCATCATCATG+GGG | - | chr1.3:8394092-8394111 | MS.gene33133:CDS | 40.0% | |
| GGCATCTTTGTTCACCTTAT+AGG | - | chr1.3:8391792-8391811 | MS.gene33133:intron | 40.0% | |
| GGGTTAGACCTAAGTTAATC+TGG | - | chr1.3:8390713-8390732 | MS.gene33133:intron | 40.0% | |
| GTCAAATGTAGCTTCAGTTG+TGG | - | chr1.3:8391212-8391231 | MS.gene33133:intron | 40.0% | |
| TCAGTAAGAAGACCCCATAA+AGG | + | chr1.3:8390427-8390446 | None:intergenic | 40.0% | |
| TCTTCCCTTATATGGACAAG+TGG | - | chr1.3:8392514-8392533 | MS.gene33133:CDS | 40.0% | |
| TGCAATTGTTGTGAAGGTAG+TGG | - | chr1.3:8392537-8392556 | MS.gene33133:intron | 40.0% | |
| TGCACCACTTGTCCATATAA+GGG | + | chr1.3:8392521-8392540 | None:intergenic | 40.0% | |
| TGGTATACAGACTCAAAGGA+TGG | - | chr1.3:8392415-8392434 | MS.gene33133:intron | 40.0% | |
| TTGCACCACTTGTCCATATA+AGG | + | chr1.3:8392522-8392541 | None:intergenic | 40.0% | |
| TTTGAGCTGAGTACAAGCAT+AGG | + | chr1.3:8394011-8394030 | None:intergenic | 40.0% | |
| ! | ACTTTTGCCATATCTCGATG+TGG | - | chr1.3:8392937-8392956 | MS.gene33133:intron | 40.0% |
| ! | ACTTTTGGCGCTTTTGCTTT+TGG | - | chr1.3:8391042-8391061 | MS.gene33133:intron | 40.0% |
| ! | AGTTTAGTGACTTGTAAGCG+CGG | - | chr1.3:8390657-8390676 | MS.gene33133:CDS | 40.0% |
| ! | ATACTCGAACCCGTAACTTT+TGG | + | chr1.3:8393161-8393180 | None:intergenic | 40.0% |
| ! | CTTTGTCCATCTGGTATTGA+AGG | - | chr1.3:8394032-8394051 | MS.gene33133:CDS | 40.0% |
| ! | CTTTTGCCATATCTCGATGT+GGG | - | chr1.3:8392938-8392957 | MS.gene33133:intron | 40.0% |
| ! | GGTTTTACTTATAGCAGTGG+CGG | - | chr1.3:8393021-8393040 | MS.gene33133:intron | 40.0% |
| ! | TAGGTGTTATATTAGGGCCA+TGG | + | chr1.3:8392241-8392260 | None:intergenic | 40.0% |
| ! | TCTCTTGTACACAGTGTTGA+TGG | - | chr1.3:8394335-8394354 | MS.gene33133:CDS | 40.0% |
| ! | TGAGAATTGGGAGAGCATAT+GGG | - | chr1.3:8393495-8393514 | MS.gene33133:intron | 40.0% |
| ! | TGTCTTGCATTTTCTTCCAC+AGG | - | chr1.3:8393737-8393756 | MS.gene33133:intron | 40.0% |
| ! | TTAATCGGGTTGTATGGTGA+TGG | - | chr1.3:8390738-8390757 | MS.gene33133:intron | 40.0% |
| ! | TTGAGAATTGGGAGAGCATA+TGG | - | chr1.3:8393494-8393513 | MS.gene33133:intron | 40.0% |
| ! | TTTGGCTTCCCAAGATGTTA+TGG | - | chr1.3:8391143-8391162 | MS.gene33133:intron | 40.0% |
| ! | TTTTGATATCTACTAGGCCG+CGG | - | chr1.3:8390939-8390958 | MS.gene33133:intron | 40.0% |
| ! | TTTTGGACTCAGTTGCTCTA+TGG | - | chr1.3:8393861-8393880 | MS.gene33133:intron | 40.0% |
| !! | CGTAATCCTTTAGAGCGTAT+TGG | + | chr1.3:8393824-8393843 | None:intergenic | 40.0% |
| !! | CTTTTGGCGCTTTTGCTTTT+GGG | - | chr1.3:8391043-8391062 | MS.gene33133:intron | 40.0% |
| !!! | CAATTTTGGCCTTAACAGCA+GGG | - | chr1.3:8391625-8391644 | MS.gene33133:intron | 40.0% |
| !!! | TTTTTCTCATAGGGGGTGTT+TGG | - | chr1.3:8391920-8391939 | MS.gene33133:intron | 40.0% |
| ATGGTAGAACAGCGACGATT+AGG | + | chr1.3:8393583-8393602 | None:intergenic | 45.0% | |
| CACCAAAACTTTGTGGATGC+CGG | - | chr1.3:8392286-8392305 | MS.gene33133:intron | 45.0% | |
| CAGTTGCTCTATGGTCTATC+AGG | - | chr1.3:8393870-8393889 | MS.gene33133:intron | 45.0% | |
| CTAGGTGCACCAAAACTTTG+TGG | - | chr1.3:8392279-8392298 | MS.gene33133:intron | 45.0% | |
| CTCAACACACTCTCATGTTC+AGG | - | chr1.3:8392963-8392982 | MS.gene33133:intron | 45.0% | |
| CTGTGCAACACATGCATCAA+TGG | + | chr1.3:8391679-8391698 | None:intergenic | 45.0% | |
| GACTTGTAAGCGCGGTTTAT+AGG | - | chr1.3:8390665-8390684 | MS.gene33133:CDS | 45.0% | |
| GCATAAACCTGTGCTTCAGA+AGG | + | chr1.3:8390373-8390392 | None:intergenic | 45.0% | |
| GCTCTCGGAGTACATGTAAA+TGG | + | chr1.3:8392727-8392746 | None:intergenic | 45.0% | |
| GTGGGTGGGGTAAACAAATT+AGG | - | chr1.3:8391065-8391084 | MS.gene33133:intron | 45.0% | |
| TCATGTTCAGGACTAGAACG+TGG | - | chr1.3:8392975-8392994 | MS.gene33133:intron | 45.0% | |
| TGAGATCCCACATCGAGATA+TGG | + | chr1.3:8392947-8392966 | None:intergenic | 45.0% | |
| TGTTCACCTTATAGGCCCTA+TGG | - | chr1.3:8391800-8391819 | MS.gene33133:intron | 45.0% | |
| ! | AGCTCAAAGCTTTGTCCATC+TGG | - | chr1.3:8394023-8394042 | MS.gene33133:CDS | 45.0% |
| ! | CTGGCATTAATCGGGTTGTA+TGG | - | chr1.3:8390732-8390751 | MS.gene33133:intron | 45.0% |
| ! | GGTTTGATGACTATTCCAGC+TGG | - | chr1.3:8391941-8391960 | MS.gene33133:intron | 45.0% |
| ! | TCTGAAGCACAGGTTTATGC+TGG | - | chr1.3:8390373-8390392 | MS.gene33133:CDS | 45.0% |
| !! | AGTTCAACCTTCTGAAGCAC+AGG | - | chr1.3:8390363-8390382 | MS.gene33133:CDS | 45.0% |
| !! | TTGTTGTGAAGGTAGTGGGT+TGG | - | chr1.3:8392542-8392561 | MS.gene33133:intron | 45.0% |
| !!! | GCAATTTTGGCCTTAACAGC+AGG | - | chr1.3:8391624-8391643 | MS.gene33133:intron | 45.0% |
| AAACTTTGTGGATGCCGGCA+AGG | - | chr1.3:8392291-8392310 | MS.gene33133:intron | 50.0% | |
| AGCGACGATTAGGCCTATCA+TGG | + | chr1.3:8393573-8393592 | None:intergenic | 50.0% | |
| AGGTATGCACGTTCGTACCT+TGG | + | chr1.3:8393257-8393276 | None:intergenic | 50.0% | |
| ATGTCGCAGCTTAGATCGCA+AGG | - | chr1.3:8391269-8391288 | MS.gene33133:intron | 50.0% | |
| CCACCCAAATGCTCAAAGAC+CGG | + | chr1.3:8390904-8390923 | None:intergenic | 50.0% | |
| CGATCTAAGCTGCGACATCA+AGG | + | chr1.3:8391267-8391286 | None:intergenic | 50.0% | |
| CGTGCATACCTCTGCTTAAC+AGG | - | chr1.3:8393266-8393285 | MS.gene33133:intron | 50.0% | |
| CTTGTGCATGATCCGATCAG+AGG | + | chr1.3:8392100-8392119 | None:intergenic | 50.0% | |
| GGCTAACCATAGGGCCTATA+AGG | + | chr1.3:8391809-8391828 | None:intergenic | 50.0% | |
| GTCAGAAGCAAGGGAAGGAT+GGG | + | chr1.3:8391712-8391731 | None:intergenic | 50.0% | |
| TGCATGTCAGAAGCAAGGGA+AGG | + | chr1.3:8391717-8391736 | None:intergenic | 50.0% | |
| TGTCAGAAGCAAGGGAAGGA+TGG | + | chr1.3:8391713-8391732 | None:intergenic | 50.0% | |
| ! | TGCCGGCATCCACAAAGTTT+TGG | + | chr1.3:8392291-8392310 | None:intergenic | 50.0% |
| ! | TGTAGTCCACATAGCCTTGC+CGG | + | chr1.3:8392308-8392327 | None:intergenic | 50.0% |
| ! | TGTCGCTCATTGATGGTTGC+AGG | - | chr1.3:8391540-8391559 | MS.gene33133:intron | 50.0% |
| !! | AGCTCAGTCGGTTCCCTTTT+AGG | - | chr1.3:8393786-8393805 | MS.gene33133:intron | 50.0% |
| !! | CTTTTGCTTTTGGGTGGGTG+GGG | - | chr1.3:8391052-8391071 | MS.gene33133:intron | 50.0% |
| !! | GCTTTTGCTTTTGGGTGGGT+GGG | - | chr1.3:8391051-8391070 | MS.gene33133:intron | 50.0% |
| !! | TGGCGCTTTTGCTTTTGGGT+GGG | - | chr1.3:8391047-8391066 | MS.gene33133:intron | 50.0% |
| !! | TTGGCGCTTTTGCTTTTGGG+TGG | - | chr1.3:8391046-8391065 | MS.gene33133:intron | 50.0% |
| CCGGTCTTTGAGCATTTGGG+TGG | - | chr1.3:8390901-8390920 | MS.gene33133:intron | 55.0% | |
| GGATGGCCCATCTTTCTCAC+AGG | - | chr1.3:8392432-8392451 | MS.gene33133:intron | 55.0% | |
| GGTTTAGGTGGTGCTCTTGC+TGG | - | chr1.3:8390304-8390323 | MS.gene33133:CDS | 55.0% | |
| GTCAAACGCAACCTGAACCG+CGG | + | chr1.3:8390959-8390978 | None:intergenic | 55.0% | |
| TATCTACTAGGCCGCGGTTC+AGG | - | chr1.3:8390945-8390964 | MS.gene33133:intron | 55.0% | |
| TCCAGCACTCCCTGCTGTTA+AGG | + | chr1.3:8391637-8391656 | None:intergenic | 55.0% | |
| TTTGCCAAGTGGCTATGCGC+AGG | + | chr1.3:8393292-8393311 | None:intergenic | 55.0% | |
| TTTGGGTGGTCGCGACTTCA+AGG | - | chr1.3:8390915-8390934 | MS.gene33133:intron | 55.0% | |
| !! | CGCTTTTGCTTTTGGGTGGG+TGG | - | chr1.3:8391050-8391069 | MS.gene33133:intron | 55.0% |
| AGGCGGAGCTTCCTTGTGAC+AGG | + | chr1.3:8393374-8393393 | None:intergenic | 60.0% | |
| CATGGCATCCCCCTGTCACA+AGG | - | chr1.3:8393360-8393379 | MS.gene33133:intron | 60.0% | |
| CGGAGCTTCCTTGTGACAGG+GGG | + | chr1.3:8393371-8393390 | None:intergenic | 60.0% | |
| CTTGTGACAGGGGGATGCCA+TGG | + | chr1.3:8393362-8393381 | None:intergenic | 60.0% | |
| GAAGCTCCGCCTCTACCTCA+AGG | - | chr1.3:8393382-8393401 | MS.gene33133:intron | 60.0% | |
| GCGGAGCTTCCTTGTGACAG+GGG | + | chr1.3:8393372-8393391 | None:intergenic | 60.0% | |
| GGCGGAGCTTCCTTGTGACA+GGG | + | chr1.3:8393373-8393392 | None:intergenic | 60.0% | |
| GGTGGTGCTCTTGCTGGTGT+TGG | - | chr1.3:8390310-8390329 | MS.gene33133:CDS | 60.0% | |
| TGCGCAGGCCTGTTAAGCAG+AGG | + | chr1.3:8393277-8393296 | None:intergenic | 60.0% | |
| TGGATGCCGGCAAGGCTATG+TGG | - | chr1.3:8392299-8392318 | MS.gene33133:intron | 60.0% | |
| ! | GCCTTAACAGCAGGGAGTGC+TGG | - | chr1.3:8391633-8391652 | MS.gene33133:intron | 60.0% |
| !! | AACAGCAGGGAGTGCTGGAG+TGG | - | chr1.3:8391638-8391657 | MS.gene33133:intron | 60.0% |
| CAGGCCTGCGCATAGCCACT+TGG | - | chr1.3:8393285-8393304 | MS.gene33133:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 8390118 | 8394367 | 8390118 | ID=MS.gene33133 |
| chr1.3 | mRNA | 8390118 | 8394367 | 8390118 | ID=MS.gene33133.t1;Parent=MS.gene33133 |
| chr1.3 | exon | 8393989 | 8394367 | 8393989 | ID=MS.gene33133.t1.exon1;Parent=MS.gene33133.t1 |
| chr1.3 | CDS | 8393989 | 8394367 | 8393989 | ID=cds.MS.gene33133.t1;Parent=MS.gene33133.t1 |
| chr1.3 | exon | 8392664 | 8392923 | 8392664 | ID=MS.gene33133.t1.exon2;Parent=MS.gene33133.t1 |
| chr1.3 | CDS | 8392664 | 8392923 | 8392664 | ID=cds.MS.gene33133.t1;Parent=MS.gene33133.t1 |
| chr1.3 | exon | 8392458 | 8392553 | 8392458 | ID=MS.gene33133.t1.exon3;Parent=MS.gene33133.t1 |
| chr1.3 | CDS | 8392458 | 8392553 | 8392458 | ID=cds.MS.gene33133.t1;Parent=MS.gene33133.t1 |
| chr1.3 | exon | 8392032 | 8392202 | 8392032 | ID=MS.gene33133.t1.exon4;Parent=MS.gene33133.t1 |
| chr1.3 | CDS | 8392032 | 8392202 | 8392032 | ID=cds.MS.gene33133.t1;Parent=MS.gene33133.t1 |
| chr1.3 | exon | 8390118 | 8390726 | 8390118 | ID=MS.gene33133.t1.exon5;Parent=MS.gene33133.t1 |
| chr1.3 | CDS | 8390118 | 8390726 | 8390118 | ID=cds.MS.gene33133.t1;Parent=MS.gene33133.t1 |
| Gene Sequence |
| Protein sequence |
