Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33454.t1 | CAA65771.1 | 99.6 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 2.60E-134 | 488 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33454.t1 | O65100 | 78.0 | 255 | 51 | 1 | 1 | 250 | 1 | 255 | 2.6e-103 | 376.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33454.t1 | Q9ZP90 | 99.6 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 1.8e-134 | 488.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052792 | MS.gene33454 | 0.906638 | 1.20E-80 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33454 | MS.gene94217 | PPI |
MS.gene07505 | MS.gene33454 | PPI |
MS.gene86821 | MS.gene33454 | PPI |
MS.gene33454 | MS.gene004968 | PPI |
MS.gene76087 | MS.gene33454 | PPI |
MS.gene33454 | MS.gene071223 | PPI |
MS.gene33454 | MS.gene29686 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33454.t1 | MTR_4g014540 | 99.200 | 250 | 2 | 0 | 1 | 250 | 1 | 250 | 0.0 | 506 |
MS.gene33454.t1 | MTR_7g069980 | 76.680 | 253 | 54 | 2 | 1 | 250 | 1 | 251 | 2.73e-133 | 376 |
MS.gene33454.t1 | MTR_5g083170 | 71.889 | 217 | 60 | 1 | 35 | 250 | 28 | 244 | 3.58e-107 | 310 |
MS.gene33454.t1 | MTR_5g083170 | 70.732 | 164 | 47 | 1 | 35 | 197 | 28 | 191 | 6.00e-75 | 226 |
MS.gene33454.t1 | MTR_5g072560 | 75.806 | 124 | 30 | 0 | 126 | 249 | 18 | 141 | 1.97e-63 | 195 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33454.t1 | AT5G01600 | 68.293 | 246 | 66 | 2 | 11 | 250 | 16 | 255 | 1.72e-116 | 333 |
MS.gene33454.t1 | AT2G40300 | 70.982 | 224 | 63 | 1 | 28 | 249 | 34 | 257 | 1.50e-111 | 321 |
MS.gene33454.t1 | AT3G56090 | 78.351 | 194 | 42 | 0 | 56 | 249 | 62 | 255 | 4.68e-107 | 310 |
MS.gene33454.t1 | AT3G11050 | 70.673 | 208 | 61 | 0 | 43 | 250 | 43 | 250 | 7.01e-103 | 299 |
MS.gene33454.t1 | AT3G61010 | 70.000 | 50 | 15 | 0 | 97 | 146 | 369 | 418 | 1.01e-15 | 76.3 |
MS.gene33454.t1 | AT3G61010 | 70.000 | 50 | 15 | 0 | 97 | 146 | 369 | 418 | 1.01e-15 | 76.3 |
Find 43 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATTGCTCATAATGTTTCTT+TGG | 0.198410 | 4.2:-86703168 | MS.gene33454:CDS |
TGTGGAGAACAGGTTCTTTA+AGG | 0.220356 | 4.2:-86702633 | MS.gene33454:intron |
CATGGAATTGGCTCTGTCTT+TGG | 0.276046 | 4.2:-86701812 | MS.gene33454:CDS |
AATGCACCAACGGCATTAAC+TGG | 0.362157 | 4.2:-86703242 | MS.gene33454:CDS |
GGCTCTGTCTTTGGAGAAGT+TGG | 0.374649 | 4.2:-86701803 | MS.gene33454:CDS |
AGAATTTGATCATGCTGAAA+AGG | 0.375272 | 4.2:-86702141 | MS.gene33454:CDS |
AAAGAAACATTATGAGCAAT+AGG | 0.377860 | 4.2:+86703170 | None:intergenic |
TGAAAAGCTCATGAAATATC+AGG | 0.391882 | 4.2:-86702582 | MS.gene33454:intron |
TCTGAGGGAGGGCTCACAAT+AGG | 0.396058 | 4.2:+86702161 | None:intergenic |
TTCTTCTTTGAATCTTCCTA+TGG | 0.409275 | 4.2:-86703309 | MS.gene33454:CDS |
CTGAGGGAGGGCTCACAATA+GGG | 0.446437 | 4.2:+86702162 | None:intergenic |
TCTTTGAATCTTCCTATGGA+TGG | 0.467506 | 4.2:-86703305 | MS.gene33454:CDS |
GTGACTCAACTGAGATTAGT+TGG | 0.480672 | 4.2:-86701041 | MS.gene33454:CDS |
CAGAGACAACGTTGCTCTCA+AGG | 0.486549 | 4.2:-86702749 | MS.gene33454:CDS |
TGATTTGTTTAGAACATTCG+TGG | 0.499706 | 4.2:-86702203 | MS.gene33454:intron |
TTCCTATGGATGGTGATAAG+AGG | 0.508563 | 4.2:-86703295 | MS.gene33454:CDS |
TCGATGAAATCTGCCAATTG+AGG | 0.510833 | 4.2:+86701596 | None:intergenic |
AGGTGAAAAGATCGAAACTT+TGG | 0.511973 | 4.2:+86703370 | None:intergenic |
TCTTTCTTGACTTCTTCAAA+CGG | 0.514880 | 4.2:+86703206 | None:intergenic |
TCGTAACAATGATCCTCAAT+TGG | 0.517803 | 4.2:-86701609 | MS.gene33454:CDS |
GAATTTGATCATGCTGAAAA+GGG | 0.518739 | 4.2:-86702140 | MS.gene33454:CDS |
CAACTGAGATTAGTTGGAAA+GGG | 0.526186 | 4.2:-86701035 | MS.gene33454:CDS |
TTCAGCATGATCAAATTCTG+AGG | 0.562649 | 4.2:+86702145 | None:intergenic |
TCAACTGAGATTAGTTGGAA+AGG | 0.563711 | 4.2:-86701036 | MS.gene33454:CDS |
TTTGAGAAATGACCCACGAT+AGG | 0.571890 | 4.2:+86703344 | None:intergenic |
TCAGCATGATCAAATTCTGA+GGG | 0.576489 | 4.2:+86702146 | None:intergenic |
CAAAGACAGAGCCAATTCCA+TGG | 0.587636 | 4.2:+86701813 | None:intergenic |
TGCTGCTGCAAATGCACCAA+CGG | 0.590613 | 4.2:-86703252 | MS.gene33454:CDS |
AGAGACAACGTTGCTCTCAA+GGG | 0.594095 | 4.2:-86702748 | MS.gene33454:CDS |
GAAAAGGGAGATGCATTGTA+TGG | 0.595467 | 4.2:-86702125 | MS.gene33454:intron |
TTCCTCTTATCACCATCCAT+AGG | 0.596094 | 4.2:+86703293 | None:intergenic |
GAACATTCGTGGTGGAAGAG+TGG | 0.598139 | 4.2:-86702192 | MS.gene33454:CDS |
CAAAGTATGCAAACAAGGAG+TGG | 0.600070 | 4.2:+86702773 | None:intergenic |
TCTGTCAAAGTATGCAAACA+AGG | 0.605468 | 4.2:+86702768 | None:intergenic |
AAATGACCCACGATAGGTGA+AGG | 0.609219 | 4.2:+86703350 | None:intergenic |
AGATTAGTTGGAAAGGGTCA+CGG | 0.615348 | 4.2:-86701029 | MS.gene33454:intron |
GTTCTTTAAGGAATCTAGTG+AGG | 0.615734 | 4.2:-86702621 | MS.gene33454:CDS |
CATGATCAAATTCTGAGGGA+GGG | 0.620152 | 4.2:+86702150 | None:intergenic |
GCATGATCAAATTCTGAGGG+AGG | 0.620192 | 4.2:+86702149 | None:intergenic |
ATAACACCAGTTAATGCCGT+TGG | 0.628331 | 4.2:+86703236 | None:intergenic |
AAACAAGGAGTGGTACACAT+AGG | 0.671283 | 4.2:+86702783 | None:intergenic |
TGATAAGAGGAAGAACGTGA+AGG | 0.682141 | 4.2:-86703282 | MS.gene33454:CDS |
TTTGTTTAGAACATTCGTGG+TGG | 0.691243 | 4.2:-86702200 | MS.gene33454:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGTATGTAAATTTTTATAA+TGG | - | chr4.2:86702226-86702245 | MS.gene33454:intron | 10.0% |
!! | TGATATAAAATATATGAATG+AGG | - | chr4.2:86703319-86703338 | MS.gene33454:CDS | 15.0% |
!! | TTAACATATAATGAATTTAG+AGG | + | chr4.2:86701991-86702010 | None:intergenic | 15.0% |
!! | TTATGTTTCATGAATATAAT+AGG | - | chr4.2:86702638-86702657 | MS.gene33454:intron | 15.0% |
!! | AAAACAACAACAAAAAAAGA+AGG | + | chr4.2:86702437-86702456 | None:intergenic | 20.0% |
!! | ACTTTATGAATAAATAGCAA+TGG | + | chr4.2:86701216-86701235 | None:intergenic | 20.0% |
!! | ATGAAAAACAAAAACCAATT+GGG | - | chr4.2:86702831-86702850 | MS.gene33454:intron | 20.0% |
!! | ATGTTTAGGTATAAATATCA+TGG | + | chr4.2:86702813-86702832 | None:intergenic | 20.0% |
!! | ATTATAATATTCATCATACG+AGG | + | chr4.2:86702036-86702055 | None:intergenic | 20.0% |
!! | TAAGAACAAGAAGAAAAAAT+TGG | + | chr4.2:86703166-86703185 | None:intergenic | 20.0% |
!! | TAATCTAAAAACATCTTCAA+TGG | + | chr4.2:86703042-86703061 | None:intergenic | 20.0% |
!! | TATTCATGAAACATAATTCT+TGG | + | chr4.2:86702634-86702653 | None:intergenic | 20.0% |
!! | TTAAATATAATCACATGTGT+CGG | - | chr4.2:86702279-86702298 | MS.gene33454:intron | 20.0% |
!!! | AATTTTCAGCTAATTATGTT+AGG | - | chr4.2:86701328-86701347 | MS.gene33454:intron | 20.0% |
!!! | ATTGTTAAGTAGTAACTTTT+TGG | - | chr4.2:86701804-86701823 | MS.gene33454:CDS | 20.0% |
!!! | TAATGGTAGTTTTAAGTATA+TGG | - | chr4.2:86702243-86702262 | MS.gene33454:intron | 20.0% |
!!! | TTGTAGCTTATTTCTTAATA+TGG | - | chr4.2:86701596-86701615 | MS.gene33454:CDS | 20.0% |
! | AAAGAAACATTATGAGCAAT+AGG | + | chr4.2:86701110-86701129 | None:intergenic | 25.0% |
! | AAGATTCAAAGAAGAAAAAG+TGG | + | chr4.2:86700964-86700983 | None:intergenic | 25.0% |
! | ACTTAAAAAGTGAATCATGT+TGG | - | chr4.2:86701728-86701747 | MS.gene33454:intron | 25.0% |
! | ATACACATATTGAGATCAAA+TGG | - | chr4.2:86702599-86702618 | MS.gene33454:CDS | 25.0% |
! | CATGAAAAACAAAAACCAAT+TGG | - | chr4.2:86702830-86702849 | MS.gene33454:intron | 25.0% |
! | GAGTCAGCATAAATAATTAA+AGG | + | chr4.2:86702399-86702418 | None:intergenic | 25.0% |
! | TATTACCAAAGTAATGTAAG+TGG | + | chr4.2:86703288-86703307 | None:intergenic | 25.0% |
! | TATTGCTCATAATGTTTCTT+TGG | - | chr4.2:86701109-86701128 | MS.gene33454:intron | 25.0% |
! | TGAAAAACAAAAACCAATTG+GGG | - | chr4.2:86702832-86702851 | MS.gene33454:intron | 25.0% |
! | TGATCTCAATATGTGTATAT+AGG | + | chr4.2:86702597-86702616 | None:intergenic | 25.0% |
! | TGTTTCATGAATATAATAGG+TGG | - | chr4.2:86702641-86702660 | MS.gene33454:intron | 25.0% |
! | TTATACAAAAGAATCATGCT+TGG | + | chr4.2:86701854-86701873 | None:intergenic | 25.0% |
! | TTATCTTGATGTTATTGTTG+TGG | - | chr4.2:86701910-86701929 | MS.gene33454:intron | 25.0% |
!! | TTTTTGTGAATTTTTGTGTG+TGG | - | chr4.2:86701626-86701645 | MS.gene33454:intron | 25.0% |
!!! | CTTTTTTTTGACTGTCATTA+AGG | - | chr4.2:86702885-86702904 | MS.gene33454:intron | 25.0% |
!!! | GGTTTTTGTTTTTCATGTTT+AGG | + | chr4.2:86702827-86702846 | None:intergenic | 25.0% |
!!! | TAAGGTTTTTGAAATCTCTA+TGG | - | chr4.2:86702903-86702922 | MS.gene33454:intron | 25.0% |
!!! | TAATAGCTTGAAATTTTAGC+AGG | - | chr4.2:86701871-86701890 | MS.gene33454:intron | 25.0% |
AAACATCTTCAATGGAATCA+AGG | + | chr4.2:86703034-86703053 | None:intergenic | 30.0% | |
AAGTAACAACCTATGATAAC+AGG | + | chr4.2:86701355-86701374 | None:intergenic | 30.0% | |
AGAATTTGATCATGCTGAAA+AGG | - | chr4.2:86702136-86702155 | MS.gene33454:CDS | 30.0% | |
AGTAACAACCTATGATAACA+GGG | + | chr4.2:86701354-86701373 | None:intergenic | 30.0% | |
ATAATGATGTAAATGCAGTG+TGG | - | chr4.2:86701459-86701478 | MS.gene33454:intron | 30.0% | |
ATTCAAAAACAGAGAGAAAG+AGG | + | chr4.2:86702535-86702554 | None:intergenic | 30.0% | |
GAATTTGATCATGCTGAAAA+GGG | - | chr4.2:86702137-86702156 | MS.gene33454:CDS | 30.0% | |
GTTTCAACTTGACAACTTAA+TGG | + | chr4.2:86702739-86702758 | None:intergenic | 30.0% | |
TACAAGAAGAAGCTTATAGA+GGG | + | chr4.2:86701581-86701600 | None:intergenic | 30.0% | |
TCTTTCTTGACTTCTTCAAA+CGG | + | chr4.2:86701074-86701093 | None:intergenic | 30.0% | |
TGAAAAGCTCATGAAATATC+AGG | - | chr4.2:86701695-86701714 | MS.gene33454:intron | 30.0% | |
TGGTATAGTGGTAAATAACA+TGG | - | chr4.2:86701824-86701843 | MS.gene33454:intron | 30.0% | |
TTCTTCTTTGAATCTTCCTA+TGG | - | chr4.2:86700968-86700987 | MS.gene33454:intron | 30.0% | |
! | TATATGTATTTTCCTTGCAC+AGG | - | chr4.2:86703184-86703203 | MS.gene33454:CDS | 30.0% |
!! | GTAGTAACTTTTTGGTATAG+TGG | - | chr4.2:86701812-86701831 | MS.gene33454:CDS | 30.0% |
!! | TGATTTGTTTAGAACATTCG+TGG | - | chr4.2:86702074-86702093 | MS.gene33454:intron | 30.0% |
!!! | CATTTGTTTTTGTTGCTTGT+AGG | - | chr4.2:86703352-86703371 | MS.gene33454:CDS | 30.0% |
AAGCTCATGAAATATCAGGT+TGG | - | chr4.2:86701699-86701718 | MS.gene33454:intron | 35.0% | |
AGAAAACACCAAGTTACTCT+TGG | + | chr4.2:86703100-86703119 | None:intergenic | 35.0% | |
AGGTGAAAAGATCGAAACTT+TGG | + | chr4.2:86700910-86700929 | None:intergenic | 35.0% | |
CTACAAGAAGAAGCTTATAG+AGG | + | chr4.2:86701582-86701601 | None:intergenic | 35.0% | |
TACCAAAGTAATGTAAGTGG+AGG | + | chr4.2:86703285-86703304 | None:intergenic | 35.0% | |
TCAGCATGATCAAATTCTGA+GGG | + | chr4.2:86702134-86702153 | None:intergenic | 35.0% | |
TCGTAACAATGATCCTCAAT+TGG | - | chr4.2:86702668-86702687 | MS.gene33454:intron | 35.0% | |
TCTCATTGCAATTCTAAGCT+TGG | + | chr4.2:86702998-86703017 | None:intergenic | 35.0% | |
TCTGTCAAAGTATGCAAACA+AGG | + | chr4.2:86701512-86701531 | None:intergenic | 35.0% | |
TCTTTGAATCTTCCTATGGA+TGG | - | chr4.2:86700972-86700991 | MS.gene33454:intron | 35.0% | |
TTCAGCATGATCAAATTCTG+AGG | + | chr4.2:86702135-86702154 | None:intergenic | 35.0% | |
TTCCTCCACTTACATTACTT+TGG | - | chr4.2:86703280-86703299 | MS.gene33454:CDS | 35.0% | |
! | AATTTTTGTGTGTGGAGAAC+AGG | - | chr4.2:86701634-86701653 | MS.gene33454:intron | 35.0% |
! | CAACTGAGATTAGTTGGAAA+GGG | - | chr4.2:86703242-86703261 | MS.gene33454:CDS | 35.0% |
! | GCAATTCTAAGCTTGGTAAT+TGG | + | chr4.2:86702991-86703010 | None:intergenic | 35.0% |
! | GTTCTTTAAGGAATCTAGTG+AGG | - | chr4.2:86701656-86701675 | MS.gene33454:intron | 35.0% |
! | TAATTGATTCAACCTGTGCA+AGG | + | chr4.2:86703199-86703218 | None:intergenic | 35.0% |
! | TCAACTGAGATTAGTTGGAA+AGG | - | chr4.2:86703241-86703260 | MS.gene33454:CDS | 35.0% |
! | TTTGTTTAGAACATTCGTGG+TGG | - | chr4.2:86702077-86702096 | MS.gene33454:intron | 35.0% |
!! | GGTTTTGTATCATCCTTACT+TGG | + | chr4.2:86701560-86701579 | None:intergenic | 35.0% |
!! | TTTTGATTCAGCCATGGAAT+TGG | - | chr4.2:86702453-86702472 | MS.gene33454:intron | 35.0% |
!!! | GGAATCAAGGTTTTAAACAG+TGG | + | chr4.2:86703021-86703040 | None:intergenic | 35.0% |
!!! | TTGTTGTTTTGATTCAGCCA+TGG | - | chr4.2:86702447-86702466 | MS.gene33454:intron | 35.0% |
AAACAAGGAGTGGTACACAT+AGG | + | chr4.2:86701497-86701516 | None:intergenic | 40.0% | |
ACATACATGTGTCAGTGTCT+AGG | + | chr4.2:86702214-86702233 | None:intergenic | 40.0% | |
ATAACACCAGTTAATGCCGT+TGG | + | chr4.2:86701044-86701063 | None:intergenic | 40.0% | |
ATGTTAGGCCCTGTTATCAT+AGG | - | chr4.2:86701343-86701362 | MS.gene33454:intron | 40.0% | |
CAAAGTATGCAAACAAGGAG+TGG | + | chr4.2:86701507-86701526 | None:intergenic | 40.0% | |
GAAAAGGGAGATGCATTGTA+TGG | - | chr4.2:86702152-86702171 | MS.gene33454:CDS | 40.0% | |
GTGACTCAACTGAGATTAGT+TGG | - | chr4.2:86703236-86703255 | MS.gene33454:CDS | 40.0% | |
TCGATGAAATCTGCCAATTG+AGG | + | chr4.2:86702684-86702703 | None:intergenic | 40.0% | |
TGATAAGAGGAAGAACGTGA+AGG | - | chr4.2:86700995-86701014 | MS.gene33454:intron | 40.0% | |
TGTGGAGAACAGGTTCTTTA+AGG | - | chr4.2:86701644-86701663 | MS.gene33454:intron | 40.0% | |
TTCCTATGGATGGTGATAAG+AGG | - | chr4.2:86700982-86701001 | MS.gene33454:intron | 40.0% | |
TTCCTCTTATCACCATCCAT+AGG | + | chr4.2:86700987-86701006 | None:intergenic | 40.0% | |
TTTGAGAAATGACCCACGAT+AGG | + | chr4.2:86700936-86700955 | None:intergenic | 40.0% | |
! | AGATTAGTTGGAAAGGGTCA+CGG | - | chr4.2:86703248-86703267 | MS.gene33454:CDS | 40.0% |
! | CATGATCAAATTCTGAGGGA+GGG | + | chr4.2:86702130-86702149 | None:intergenic | 40.0% |
! | CTTTAGCTCCAAGAGTAACT+TGG | - | chr4.2:86703089-86703108 | MS.gene33454:intron | 40.0% |
! | TTTCATCGAGAGCGAGTTTT+TGG | - | chr4.2:86702695-86702714 | MS.gene33454:intron | 40.0% |
! | TTTTCACCTTCACCTATCGT+GGG | - | chr4.2:86700921-86700940 | MS.gene33454:intron | 40.0% |
!! | TTTTGTTGCTTGTAGGTGTG+TGG | - | chr4.2:86703359-86703378 | MS.gene33454:CDS | 40.0% |
AAATGACCCACGATAGGTGA+AGG | + | chr4.2:86700930-86700949 | None:intergenic | 45.0% | |
AATGCACCAACGGCATTAAC+TGG | - | chr4.2:86701035-86701054 | MS.gene33454:CDS | 45.0% | |
AATTGCAGTCAGTCCCCAAT+TGG | + | chr4.2:86702848-86702867 | None:intergenic | 45.0% | |
AGAGACAACGTTGCTCTCAA+GGG | - | chr4.2:86701529-86701548 | MS.gene33454:intron | 45.0% | |
CAAAGACAGAGCCAATTCCA+TGG | + | chr4.2:86702467-86702486 | None:intergenic | 45.0% | |
! | CTTTTCACCTTCACCTATCG+TGG | - | chr4.2:86700920-86700939 | MS.gene33454:intron | 45.0% |
! | GCATGATCAAATTCTGAGGG+AGG | + | chr4.2:86702131-86702150 | None:intergenic | 45.0% |
!! | CATGGAATTGGCTCTGTCTT+TGG | - | chr4.2:86702465-86702484 | MS.gene33454:intron | 45.0% |
CAGAGACAACGTTGCTCTCA+AGG | - | chr4.2:86701528-86701547 | MS.gene33454:intron | 50.0% | |
CTCAAGGGACTTGCCAAGTA+AGG | - | chr4.2:86701544-86701563 | MS.gene33454:intron | 50.0% | |
TGCTGCTGCAAATGCACCAA+CGG | - | chr4.2:86701025-86701044 | MS.gene33454:intron | 50.0% | |
! | GAACATTCGTGGTGGAAGAG+TGG | - | chr4.2:86702085-86702104 | MS.gene33454:intron | 50.0% |
! | GGCTCTGTCTTTGGAGAAGT+TGG | - | chr4.2:86702474-86702493 | MS.gene33454:intron | 50.0% |
!!! | GAGCGAGTTTTTGGTAGAGC+AGG | - | chr4.2:86702704-86702723 | MS.gene33454:intron | 50.0% |
CTGAGGGAGGGCTCACAATA+GGG | + | chr4.2:86702118-86702137 | None:intergenic | 55.0% | |
CTGCAGATCGAGAACGTGCA+TGG | + | chr4.2:86702330-86702349 | None:intergenic | 55.0% | |
TCTGAGGGAGGGCTCACAAT+AGG | + | chr4.2:86702119-86702138 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 86700891 | 86703408 | 86700891 | ID=MS.gene33454 |
chr4.2 | mRNA | 86700891 | 86703408 | 86700891 | ID=MS.gene33454.t1;Parent=MS.gene33454 |
chr4.2 | exon | 86703116 | 86703408 | 86703116 | ID=MS.gene33454.t1.exon1;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86703116 | 86703408 | 86703116 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
chr4.2 | exon | 86702739 | 86702822 | 86702739 | ID=MS.gene33454.t1.exon2;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86702739 | 86702822 | 86702739 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
chr4.2 | exon | 86702583 | 86702643 | 86702583 | ID=MS.gene33454.t1.exon3;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86702583 | 86702643 | 86702583 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
chr4.2 | exon | 86702126 | 86702213 | 86702126 | ID=MS.gene33454.t1.exon4;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86702126 | 86702213 | 86702126 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
chr4.2 | exon | 86701774 | 86701835 | 86701774 | ID=MS.gene33454.t1.exon5;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86701774 | 86701835 | 86701774 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
chr4.2 | exon | 86701574 | 86701639 | 86701574 | ID=MS.gene33454.t1.exon6;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86701574 | 86701639 | 86701574 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
chr4.2 | exon | 86701030 | 86701093 | 86701030 | ID=MS.gene33454.t1.exon7;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86701030 | 86701093 | 86701030 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
chr4.2 | exon | 86700891 | 86700925 | 86700891 | ID=MS.gene33454.t1.exon8;Parent=MS.gene33454.t1 |
chr4.2 | CDS | 86700891 | 86700925 | 86700891 | ID=cds.MS.gene33454.t1;Parent=MS.gene33454.t1 |
Gene Sequence |
Protein sequence |