Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33515.t1 | PNY17631.1 | 88.1 | 176 | 21 | 0 | 1 | 176 | 39 | 214 | 4.90E-86 | 327.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33515.t1 | Q84VY3 | 68.8 | 173 | 54 | 0 | 1 | 173 | 55 | 227 | 1.4e-68 | 260.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33515.t1 | A0A2K3PQT1 | 88.1 | 176 | 21 | 0 | 1 | 176 | 39 | 214 | 3.6e-86 | 327.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene33515 | 0.801937 | 7.11E-49 | -1.69E-46 |
| MS.gene050298 | MS.gene33515 | 0.82326 | 1.52E-53 | -1.69E-46 |
| MS.gene050563 | MS.gene33515 | 0.84646 | 2.14E-59 | -1.69E-46 |
| MS.gene050584 | MS.gene33515 | 0.840338 | 9.23E-58 | -1.69E-46 |
| MS.gene050585 | MS.gene33515 | 0.832241 | 1.06E-55 | -1.69E-46 |
| MS.gene050587 | MS.gene33515 | 0.860292 | 2.29E-63 | -1.69E-46 |
| MS.gene05143 | MS.gene33515 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene33515 | 0.828123 | 1.07E-54 | -1.69E-46 |
| MS.gene052142 | MS.gene33515 | 0.837572 | 4.80E-57 | -1.69E-46 |
| MS.gene052698 | MS.gene33515 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene053383 | MS.gene33515 | 0.846413 | 2.21E-59 | -1.69E-46 |
| MS.gene05456 | MS.gene33515 | 0.891529 | 3.66E-74 | -1.69E-46 |
| MS.gene055359 | MS.gene33515 | 0.82272 | 2.04E-53 | -1.69E-46 |
| MS.gene057881 | MS.gene33515 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene33515 | 0.840781 | 7.07E-58 | -1.69E-46 |
| MS.gene059768 | MS.gene33515 | 0.837173 | 6.08E-57 | -1.69E-46 |
| MS.gene060691 | MS.gene33515 | 0.851666 | 7.65E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33515.t1 | MTR_3g090010 | 77.228 | 202 | 42 | 1 | 1 | 202 | 38 | 235 | 1.18e-111 | 324 |
| MS.gene33515.t1 | MTR_3g090020 | 73.762 | 202 | 49 | 1 | 1 | 202 | 34 | 231 | 8.69e-107 | 311 |
| MS.gene33515.t1 | MTR_3g090100 | 72.772 | 202 | 51 | 1 | 1 | 202 | 34 | 231 | 1.26e-106 | 311 |
| MS.gene33515.t1 | MTR_1g029150 | 76.301 | 173 | 41 | 0 | 1 | 173 | 55 | 227 | 4.90e-96 | 285 |
| MS.gene33515.t1 | MTR_3g089025 | 67.822 | 202 | 61 | 1 | 1 | 202 | 37 | 234 | 3.87e-95 | 282 |
| MS.gene33515.t1 | MTR_5g024130 | 68.786 | 173 | 52 | 1 | 1 | 173 | 62 | 232 | 7.86e-83 | 251 |
| MS.gene33515.t1 | MTR_4g087440 | 68.786 | 173 | 52 | 1 | 1 | 173 | 62 | 232 | 8.66e-83 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33515.t1 | AT1G43800 | 68.786 | 173 | 54 | 0 | 1 | 173 | 55 | 227 | 1.94e-87 | 263 |
| MS.gene33515.t1 | AT3G02630 | 68.208 | 173 | 53 | 1 | 1 | 173 | 64 | 234 | 5.18e-81 | 247 |
| MS.gene33515.t1 | AT3G02610 | 67.052 | 173 | 56 | 1 | 1 | 173 | 76 | 247 | 1.08e-79 | 244 |
| MS.gene33515.t1 | AT3G02610 | 67.052 | 173 | 56 | 1 | 1 | 173 | 74 | 245 | 1.09e-79 | 244 |
| MS.gene33515.t1 | AT5G16230 | 67.059 | 170 | 55 | 1 | 4 | 173 | 69 | 237 | 7.41e-79 | 241 |
| MS.gene33515.t1 | AT5G16240 | 66.474 | 173 | 56 | 1 | 1 | 173 | 62 | 232 | 2.63e-78 | 240 |
| MS.gene33515.t1 | AT2G43710 | 67.052 | 173 | 55 | 1 | 1 | 173 | 70 | 240 | 3.37e-78 | 240 |
| MS.gene33515.t1 | AT2G43710 | 67.052 | 173 | 55 | 1 | 1 | 173 | 70 | 240 | 3.49e-78 | 240 |
| MS.gene33515.t1 | AT3G02620 | 65.143 | 175 | 60 | 1 | 1 | 175 | 66 | 239 | 4.68e-78 | 239 |
| MS.gene33515.t1 | AT3G02620 | 65.143 | 175 | 60 | 1 | 1 | 175 | 69 | 242 | 4.98e-78 | 239 |
| MS.gene33515.t1 | AT5G16230 | 66.049 | 162 | 54 | 1 | 12 | 173 | 1 | 161 | 1.09e-74 | 228 |
| MS.gene33515.t1 | AT3G02620 | 65.244 | 164 | 56 | 1 | 12 | 175 | 1 | 163 | 1.46e-73 | 226 |
Find 59 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGATCAAGTGAAGGCATTA+AGG | 0.300188 | 3.3:-75711485 | MS.gene33515:CDS |
| AAAACATATCTCTATCTTTC+GGG | 0.321851 | 3.3:-75711264 | MS.gene33515:CDS |
| GGGTCGGGTTGATATGTTCA+TGG | 0.349549 | 3.3:-75711244 | MS.gene33515:CDS |
| CAAAACATATCTCTATCTTT+CGG | 0.357765 | 3.3:-75711265 | MS.gene33515:CDS |
| CCAACATTCCTCCACTGGTT+TGG | 0.368196 | 3.3:+75711557 | None:intergenic |
| TTGCTTATGGTGTAGGATAT+AGG | 0.368907 | 3.3:-75710406 | MS.gene33515:intron |
| GGGCTGTATGGACACGCTCT+TGG | 0.392310 | 3.3:-75711320 | MS.gene33515:CDS |
| CGATCAAGTGAAGGCATTAA+GGG | 0.400225 | 3.3:-75711484 | MS.gene33515:CDS |
| TTTCAAGTCATTAGAGAGTT+GGG | 0.400750 | 3.3:-75711604 | MS.gene33515:CDS |
| ACAGAAAAGTGGCTCGCTCT+TGG | 0.405583 | 3.3:+75710341 | None:intergenic |
| CATTGCCAACGTACCAATCA+TGG | 0.428195 | 3.3:-75711395 | MS.gene33515:CDS |
| GCACCAATCCATGGGCTGTA+TGG | 0.441370 | 3.3:-75711332 | MS.gene33515:CDS |
| CTTGGACGGCTGAGGAGAAT+AGG | 0.445934 | 3.3:-75711302 | MS.gene33515:CDS |
| AAAACTACAAAATAATCGTT+TGG | 0.448525 | 3.3:+75711444 | None:intergenic |
| ATATCTCTATCTTTCGGGTC+GGG | 0.456137 | 3.3:-75711259 | MS.gene33515:CDS |
| TCCTCCACTGGTTTGGCTAG+TGG | 0.461572 | 3.3:+75711564 | None:intergenic |
| CCAGTCTGTTAAACCATGAT+TGG | 0.462427 | 3.3:+75711382 | None:intergenic |
| GGCTGCCAACATTCCTCCAC+TGG | 0.466668 | 3.3:+75711552 | None:intergenic |
| GCATAAGCAAAAGCCTTGTA+TGG | 0.479543 | 3.3:+75710370 | None:intergenic |
| GTACGTTGGCAATGCTTCCT+CGG | 0.500450 | 3.3:+75711404 | None:intergenic |
| ATCCAATACTTAATTAGAGC+TGG | 0.502293 | 3.3:-75711210 | MS.gene33515:CDS |
| ATGGTGTAGGATATAGGAAC+AGG | 0.502877 | 3.3:-75710400 | MS.gene33515:intron |
| TGCCAGCTCTAATTAAGTAT+TGG | 0.509971 | 3.3:+75711208 | None:intergenic |
| CCAATCATGGTTTAACAGAC+TGG | 0.510965 | 3.3:-75711382 | MS.gene33515:CDS |
| CATATCTCTATCTTTCGGGT+CGG | 0.512882 | 3.3:-75711260 | MS.gene33515:CDS |
| ATGGTTTAACAGACTGGATG+GGG | 0.515527 | 3.3:-75711376 | MS.gene33515:CDS |
| CTGGTTCAAGCACCAATCCA+TGG | 0.522757 | 3.3:-75711341 | MS.gene33515:CDS |
| TCATGGTTTAACAGACTGGA+TGG | 0.523384 | 3.3:-75711378 | MS.gene33515:CDS |
| CCAAACCAGTGGAGGAATGT+TGG | 0.526760 | 3.3:-75711557 | MS.gene33515:CDS |
| GATGGGGTTGGAGACGAGAC+TGG | 0.544491 | 3.3:-75711360 | MS.gene33515:CDS |
| TCCGACGGTAGTGAAGAGTC+TGG | 0.546524 | 3.3:+75711516 | None:intergenic |
| TTTAACAGACTGGATGGGGT+TGG | 0.546711 | 3.3:-75711372 | MS.gene33515:CDS |
| CAGCATGGCTCGACTCGCTA+AGG | 0.548473 | 3.3:-75710312 | MS.gene33515:CDS |
| CATGGTTTAACAGACTGGAT+GGG | 0.552177 | 3.3:-75711377 | MS.gene33515:CDS |
| TGTATGGACACGCTCTTGGA+CGG | 0.555722 | 3.3:-75711316 | MS.gene33515:CDS |
| AAAAGTGGCTCGCTCTTGGA+AGG | 0.559887 | 3.3:+75710345 | None:intergenic |
| ATACTTAATTAGAGCTGGCA+TGG | 0.560206 | 3.3:-75711205 | MS.gene33515:intron |
| GAGCGTGTCCATACAGCCCA+TGG | 0.565706 | 3.3:+75711324 | None:intergenic |
| CCAACGCTTGCATGTATATG+TGG | 0.573043 | 3.3:-75710278 | MS.gene33515:CDS |
| TGTCCATACAGCCCATGGAT+TGG | 0.576962 | 3.3:+75711329 | None:intergenic |
| CCACATATACATGCAAGCGT+TGG | 0.581994 | 3.3:+75710278 | None:intergenic |
| TTAAACCATGATTGGTACGT+TGG | 0.582627 | 3.3:+75711390 | None:intergenic |
| TGGTTCAAGCACCAATCCAT+GGG | 0.582779 | 3.3:-75711340 | MS.gene33515:CDS |
| GACACGCTCTTGGACGGCTG+AGG | 0.585462 | 3.3:-75711310 | MS.gene33515:CDS |
| AACAGGAAGTAATCCATACA+AGG | 0.590466 | 3.3:-75710383 | MS.gene33515:CDS |
| GCCAGACTCTTCACTACCGT+CGG | 0.590866 | 3.3:-75711517 | MS.gene33515:CDS |
| GCCACTAGCCAAACCAGTGG+AGG | 0.597505 | 3.3:-75711565 | MS.gene33515:CDS |
| TGCTGCGTCTGACAGAAAAG+TGG | 0.603958 | 3.3:+75710330 | None:intergenic |
| GATCATTGCAAAACTTCTAG+AGG | 0.605970 | 3.3:-75710210 | None:intergenic |
| GAAGGCATTAAGGGATCGAA+CGG | 0.611309 | 3.3:-75711475 | MS.gene33515:CDS |
| ACGGCTGAGGAGAATAGGCA+TGG | 0.622537 | 3.3:-75711297 | MS.gene33515:CDS |
| GCTCGACTCGCTAAGGAGAG+AGG | 0.626899 | 3.3:-75710305 | MS.gene33515:CDS |
| TGAGTTCATCGATCAAGTGA+AGG | 0.637744 | 3.3:-75711493 | MS.gene33515:CDS |
| GCCACGAGATTGCATATGAG+AGG | 0.641136 | 3.3:-75710232 | MS.gene33515:CDS |
| TCCTCTCATATGCAATCTCG+TGG | 0.655385 | 3.3:+75710231 | None:intergenic |
| TGATCGATGAACTCATCCGA+CGG | 0.705040 | 3.3:+75711501 | None:intergenic |
| GCTGCCACTAGCCAAACCAG+TGG | 0.706140 | 3.3:-75711568 | MS.gene33515:CDS |
| GAGTCTGGCAACAAATCATG+TGG | 0.719794 | 3.3:+75711531 | None:intergenic |
| AGTGGGTGACATGATCACCG+AGG | 0.783297 | 3.3:-75711421 | MS.gene33515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATCATAAATGAAATAA+CGG | + | chr3.3:75711075-75711094 | None:intergenic | 15.0% |
| !! | TAAAATTAATTGATTGCTTA+TGG | - | chr3.3:75711421-75711440 | MS.gene33515:CDS | 15.0% |
| !! | TATTTCATTTATGATTAAGA+TGG | - | chr3.3:75711076-75711095 | MS.gene33515:intron | 15.0% |
| !!! | AGTCTAAAATAATTGTTATA+TGG | - | chr3.3:75711117-75711136 | MS.gene33515:intron | 15.0% |
| !!! | ATGATATTTTTTATACACAT+CGG | + | chr3.3:75710795-75710814 | None:intergenic | 15.0% |
| !! | AAAACTACAAAATAATCGTT+TGG | + | chr3.3:75710399-75710418 | None:intergenic | 20.0% |
| !! | AAAAGTGGAAGAAATATTAT+AGG | - | chr3.3:75711022-75711041 | MS.gene33515:intron | 20.0% |
| !! | ATTACCAAAAAAATTGTATG+TGG | + | chr3.3:75711215-75711234 | None:intergenic | 20.0% |
| !! | TTACCAAAAAAATTGTATGT+GGG | + | chr3.3:75711214-75711233 | None:intergenic | 20.0% |
| !!! | ATATCTTTCCATATTCATTT+TGG | - | chr3.3:75710954-75710973 | MS.gene33515:intron | 20.0% |
| !!! | CTTGAAAATTTCTTTCTTTT+CGG | + | chr3.3:75710223-75710242 | None:intergenic | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | - | chr3.3:75710402-75710421 | MS.gene33515:intron | 20.0% |
| !!! | TATCTTTCCATATTCATTTT+GGG | - | chr3.3:75710955-75710974 | MS.gene33515:intron | 20.0% |
| !!! | TGGTAAAGATTTAAAAGTAT+GGG | + | chr3.3:75710983-75711002 | None:intergenic | 20.0% |
| !!! | TTGAAAATTTCTTTCTTTTC+GGG | + | chr3.3:75710222-75710241 | None:intergenic | 20.0% |
| ! | AAAACATATCTCTATCTTTC+GGG | - | chr3.3:75710576-75710595 | MS.gene33515:intron | 25.0% |
| ! | AATTTGTGTGGATCAATTTA+CGG | - | chr3.3:75710838-75710857 | MS.gene33515:intron | 25.0% |
| ! | ATCATCCATGTAAAAAAACA+GGG | + | chr3.3:75711381-75711400 | None:intergenic | 25.0% |
| ! | ATTCTTACTTTGTTCCTTAA+AGG | - | chr3.3:75711295-75711314 | MS.gene33515:CDS | 25.0% |
| ! | CAAAACATATCTCTATCTTT+CGG | - | chr3.3:75710575-75710594 | MS.gene33515:intron | 25.0% |
| ! | CTGGTAAAGATTTAAAAGTA+TGG | + | chr3.3:75710984-75711003 | None:intergenic | 25.0% |
| ! | TACCAAAAAAATTGTATGTG+GGG | + | chr3.3:75711213-75711232 | None:intergenic | 25.0% |
| ! | TATCATCCATGTAAAAAAAC+AGG | + | chr3.3:75711382-75711401 | None:intergenic | 25.0% |
| ! | TTAAAATCAGAGAAGATATC+TGG | + | chr3.3:75711003-75711022 | None:intergenic | 25.0% |
| ! | TTCTTACTTTGTTCCTTAAA+GGG | - | chr3.3:75711296-75711315 | MS.gene33515:CDS | 25.0% |
| !! | ATCTTTCCATATTCATTTTG+GGG | - | chr3.3:75710956-75710975 | MS.gene33515:intron | 25.0% |
| !!! | ACAATTTTTTTGGTAATGCT+TGG | - | chr3.3:75711218-75711237 | MS.gene33515:CDS | 25.0% |
| !!! | CGATTATTTTGTAGTTTTAG+TGG | - | chr3.3:75710401-75710420 | MS.gene33515:intron | 25.0% |
| !!! | TCTTCTCTGATTTTAAAAAG+TGG | - | chr3.3:75711007-75711026 | MS.gene33515:intron | 25.0% |
| ATCCAATACTTAATTAGAGC+TGG | - | chr3.3:75710630-75710649 | MS.gene33515:intron | 30.0% | |
| CATTCAAATGTGAATTTGTG+TGG | - | chr3.3:75710826-75710845 | MS.gene33515:intron | 30.0% | |
| GTAAAAAAACAGGGTAATGT+AGG | + | chr3.3:75711372-75711391 | None:intergenic | 30.0% | |
| TAATTGATTGCTTATGGTGT+AGG | - | chr3.3:75711427-75711446 | MS.gene33515:CDS | 30.0% | |
| ! | TAGACTTTTACAAAGAGAGA+GGG | + | chr3.3:75711103-75711122 | None:intergenic | 30.0% |
| ! | TTAGACTTTTACAAAGAGAG+AGG | + | chr3.3:75711104-75711123 | None:intergenic | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | - | chr3.3:75710236-75710255 | MS.gene33515:CDS | 30.0% |
| !! | TCCATCCATATGATTTTGAT+CGG | + | chr3.3:75711335-75711354 | None:intergenic | 30.0% |
| !!! | CATTACCCTGTTTTTTTACA+TGG | - | chr3.3:75711373-75711392 | MS.gene33515:CDS | 30.0% |
| !!! | TTCCCCACATACAATTTTTT+TGG | - | chr3.3:75711208-75711227 | MS.gene33515:CDS | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | - | chr3.3:75710235-75710254 | MS.gene33515:CDS | 30.0% |
| AACAGGAAGTAATCCATACA+AGG | - | chr3.3:75711457-75711476 | MS.gene33515:CDS | 35.0% | |
| ATACTTAATTAGAGCTGGCA+TGG | - | chr3.3:75710635-75710654 | MS.gene33515:intron | 35.0% | |
| ATCCATTCTACACATTGGAT+CGG | - | chr3.3:75711253-75711272 | MS.gene33515:CDS | 35.0% | |
| ATGTGTAGAATGGATGAATG+TGG | + | chr3.3:75711248-75711267 | None:intergenic | 35.0% | |
| CATGCAAATACTCACATAAG+AGG | + | chr3.3:75710913-75710932 | None:intergenic | 35.0% | |
| CATTCATCCATTCTACACAT+TGG | - | chr3.3:75711248-75711267 | MS.gene33515:CDS | 35.0% | |
| TTAAACCATGATTGGTACGT+TGG | + | chr3.3:75710453-75710472 | None:intergenic | 35.0% | |
| TTGCTTATGGTGTAGGATAT+AGG | - | chr3.3:75711434-75711453 | MS.gene33515:CDS | 35.0% | |
| ! | AGACTTTTACAAAGAGAGAG+GGG | + | chr3.3:75711102-75711121 | None:intergenic | 35.0% |
| ! | TGCCAGCTCTAATTAAGTAT+TGG | + | chr3.3:75710635-75710654 | None:intergenic | 35.0% |
| !! | CCATCCATATGATTTTGATC+GGG | + | chr3.3:75711334-75711353 | None:intergenic | 35.0% |
| AAACAGGGTAATGTAGGTGA+TGG | + | chr3.3:75711366-75711385 | None:intergenic | 40.0% | |
| ATGGGACCCCAAAATGAATA+TGG | + | chr3.3:75710965-75710984 | None:intergenic | 40.0% | |
| ATGGTGTAGGATATAGGAAC+AGG | - | chr3.3:75711440-75711459 | MS.gene33515:CDS | 40.0% | |
| ATGGTTTAACAGACTGGATG+GGG | - | chr3.3:75710464-75710483 | MS.gene33515:intron | 40.0% | |
| CATGGTTTAACAGACTGGAT+GGG | - | chr3.3:75710463-75710482 | MS.gene33515:intron | 40.0% | |
| CCAATCATGGTTTAACAGAC+TGG | - | chr3.3:75710458-75710477 | MS.gene33515:intron | 40.0% | |
| CCAGTCTGTTAAACCATGAT+TGG | + | chr3.3:75710461-75710480 | None:intergenic | 40.0% | |
| CCCGATCAAAATCATATGGA+TGG | - | chr3.3:75711331-75711350 | MS.gene33515:CDS | 40.0% | |
| TCATGGTTTAACAGACTGGA+TGG | - | chr3.3:75710462-75710481 | MS.gene33515:intron | 40.0% | |
| TGAGTTCATCGATCAAGTGA+AGG | - | chr3.3:75710347-75710366 | MS.gene33515:CDS | 40.0% | |
| ! | ATATCTCTATCTTTCGGGTC+GGG | - | chr3.3:75710581-75710600 | MS.gene33515:intron | 40.0% |
| ! | CATATCTCTATCTTTCGGGT+CGG | - | chr3.3:75710580-75710599 | MS.gene33515:intron | 40.0% |
| ! | GCATAAGCAAAAGCCTTGTA+TGG | + | chr3.3:75711473-75711492 | None:intergenic | 40.0% |
| ! | TCCTTAAAGGGTGTGAATGT+GGG | - | chr3.3:75711308-75711327 | MS.gene33515:CDS | 40.0% |
| ! | TTCCTTAAAGGGTGTGAATG+TGG | - | chr3.3:75711307-75711326 | MS.gene33515:CDS | 40.0% |
| !! | CGATCAAGTGAAGGCATTAA+GGG | - | chr3.3:75710356-75710375 | MS.gene33515:CDS | 40.0% |
| !! | TCGATCAAGTGAAGGCATTA+AGG | - | chr3.3:75710355-75710374 | MS.gene33515:CDS | 40.0% |
| CATTGCCAACGTACCAATCA+TGG | - | chr3.3:75710445-75710464 | MS.gene33515:intron | 45.0% | |
| CCAACGCTTGCATGTATATG+TGG | - | chr3.3:75711562-75711581 | MS.gene33515:CDS | 45.0% | |
| CCACATATACATGCAAGCGT+TGG | + | chr3.3:75711565-75711584 | None:intergenic | 45.0% | |
| GACCGATCCAATGTGTAGAA+TGG | + | chr3.3:75711258-75711277 | None:intergenic | 45.0% | |
| GAGTCTGGCAACAAATCATG+TGG | + | chr3.3:75710312-75710331 | None:intergenic | 45.0% | |
| TCCTCTCATATGCAATCTCG+TGG | + | chr3.3:75711612-75711631 | None:intergenic | 45.0% | |
| TGATCGATGAACTCATCCGA+CGG | + | chr3.3:75710342-75710361 | None:intergenic | 45.0% | |
| TGGGCCCGATCAAAATCATA+TGG | - | chr3.3:75711327-75711346 | MS.gene33515:CDS | 45.0% | |
| TGGTTCAAGCACCAATCCAT+GGG | - | chr3.3:75710500-75710519 | MS.gene33515:intron | 45.0% | |
| TTTAACAGACTGGATGGGGT+TGG | - | chr3.3:75710468-75710487 | MS.gene33515:intron | 45.0% | |
| !! | GAAGGCATTAAGGGATCGAA+CGG | - | chr3.3:75710365-75710384 | MS.gene33515:CDS | 45.0% |
| AAAAGTGGCTCGCTCTTGGA+AGG | + | chr3.3:75711498-75711517 | None:intergenic | 50.0% | |
| ACAGAAAAGTGGCTCGCTCT+TGG | + | chr3.3:75711502-75711521 | None:intergenic | 50.0% | |
| CCAAACCAGTGGAGGAATGT+TGG | - | chr3.3:75710283-75710302 | MS.gene33515:CDS | 50.0% | |
| CTGGTTCAAGCACCAATCCA+TGG | - | chr3.3:75710499-75710518 | MS.gene33515:intron | 50.0% | |
| GCCACGAGATTGCATATGAG+AGG | - | chr3.3:75711608-75711627 | MS.gene33515:CDS | 50.0% | |
| GCCCACATTCACACCCTTTA+AGG | + | chr3.3:75711312-75711331 | None:intergenic | 50.0% | |
| GTACGTTGGCAATGCTTCCT+CGG | + | chr3.3:75710439-75710458 | None:intergenic | 50.0% | |
| TGCTGCGTCTGACAGAAAAG+TGG | + | chr3.3:75711513-75711532 | None:intergenic | 50.0% | |
| TGTATGGACACGCTCTTGGA+CGG | - | chr3.3:75710524-75710543 | MS.gene33515:intron | 50.0% | |
| TGTCCATACAGCCCATGGAT+TGG | + | chr3.3:75710514-75710533 | None:intergenic | 50.0% | |
| ! | CCAACATTCCTCCACTGGTT+TGG | + | chr3.3:75710286-75710305 | None:intergenic | 50.0% |
| ! | CTTTTCTGTCAGACGCAGCA+TGG | - | chr3.3:75711513-75711532 | MS.gene33515:CDS | 50.0% |
| !! | GGGTCGGGTTGATATGTTCA+TGG | - | chr3.3:75710596-75710615 | MS.gene33515:intron | 50.0% |
| ACGGCTGAGGAGAATAGGCA+TGG | - | chr3.3:75710543-75710562 | MS.gene33515:intron | 55.0% | |
| AGTGGGTGACATGATCACCG+AGG | - | chr3.3:75710419-75710438 | MS.gene33515:intron | 55.0% | |
| CTTGGACGGCTGAGGAGAAT+AGG | - | chr3.3:75710538-75710557 | MS.gene33515:intron | 55.0% | |
| GCCAGACTCTTCACTACCGT+CGG | - | chr3.3:75710323-75710342 | MS.gene33515:CDS | 55.0% | |
| TCCGACGGTAGTGAAGAGTC+TGG | + | chr3.3:75710327-75710346 | None:intergenic | 55.0% | |
| ! | GCACCAATCCATGGGCTGTA+TGG | - | chr3.3:75710508-75710527 | MS.gene33515:intron | 55.0% |
| !! | TCCTCCACTGGTTTGGCTAG+TGG | + | chr3.3:75710279-75710298 | None:intergenic | 55.0% |
| GAGCGTGTCCATACAGCCCA+TGG | + | chr3.3:75710519-75710538 | None:intergenic | 60.0% | |
| GATGGGGTTGGAGACGAGAC+TGG | - | chr3.3:75710480-75710499 | MS.gene33515:intron | 60.0% | |
| GCCACTAGCCAAACCAGTGG+AGG | - | chr3.3:75710275-75710294 | MS.gene33515:CDS | 60.0% | |
| GCTGCCACTAGCCAAACCAG+TGG | - | chr3.3:75710272-75710291 | MS.gene33515:CDS | 60.0% | |
| GGCTGCCAACATTCCTCCAC+TGG | + | chr3.3:75710291-75710310 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | - | chr3.3:75710520-75710539 | MS.gene33515:intron | 60.0% | |
| ! | CAGCATGGCTCGACTCGCTA+AGG | - | chr3.3:75711528-75711547 | MS.gene33515:CDS | 60.0% |
| ! | GCTCGACTCGCTAAGGAGAG+AGG | - | chr3.3:75711535-75711554 | MS.gene33515:CDS | 60.0% |
| GACACGCTCTTGGACGGCTG+AGG | - | chr3.3:75710530-75710549 | MS.gene33515:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75710213 | 75711649 | 75710213 | ID=MS.gene33515 |
| chr3.3 | mRNA | 75710213 | 75711649 | 75710213 | ID=MS.gene33515.t1;Parent=MS.gene33515 |
| chr3.3 | exon | 75711206 | 75711649 | 75711206 | ID=MS.gene33515.t1.exon1;Parent=MS.gene33515.t1 |
| chr3.3 | CDS | 75711206 | 75711649 | 75711206 | ID=cds.MS.gene33515.t1;Parent=MS.gene33515.t1 |
| chr3.3 | exon | 75710213 | 75710413 | 75710213 | ID=MS.gene33515.t1.exon2;Parent=MS.gene33515.t1 |
| chr3.3 | CDS | 75710213 | 75710413 | 75710213 | ID=cds.MS.gene33515.t1;Parent=MS.gene33515.t1 |
| Gene Sequence |
| Protein sequence |
