Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33599.t1 | KEH40533.1 | 93.1 | 305 | 20 | 1 | 14 | 318 | 49 | 352 | 9.40E-166 | 592.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33599.t1 | Q7Y1X1 | 66.1 | 301 | 100 | 2 | 18 | 317 | 82 | 381 | 1.6e-118 | 427.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33599.t1 | A0A072VGH1 | 93.1 | 305 | 20 | 1 | 14 | 318 | 49 | 352 | 6.8e-166 | 592.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene33599 | 0.810623 | 1.05E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene33599 | 0.813181 | 2.92E-51 | -1.69E-46 |
| MS.gene056354 | MS.gene33599 | 0.806893 | 6.59E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene33599 | 0.807965 | 3.91E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene33599 | 0.803504 | 3.38E-49 | -1.69E-46 |
| MS.gene059685 | MS.gene33599 | 0.827027 | 1.96E-54 | -1.69E-46 |
| MS.gene060823 | MS.gene33599 | 0.810466 | 1.14E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene33599 | -0.80018 | 1.63E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33599.t1 | MTR_1g030265 | 93.115 | 305 | 20 | 1 | 14 | 318 | 49 | 352 | 0.0 | 585 |
| MS.gene33599.t1 | MTR_1g030230 | 86.711 | 301 | 39 | 1 | 18 | 318 | 80 | 379 | 0.0 | 541 |
| MS.gene33599.t1 | MTR_1g030268 | 85.570 | 298 | 40 | 2 | 18 | 315 | 88 | 382 | 0.0 | 516 |
| MS.gene33599.t1 | MTR_1g030275 | 81.728 | 301 | 52 | 2 | 18 | 318 | 87 | 384 | 0.0 | 506 |
| MS.gene33599.t1 | MTR_1g030220 | 73.000 | 300 | 80 | 1 | 18 | 317 | 88 | 386 | 9.07e-166 | 467 |
| MS.gene33599.t1 | MTR_1g030340 | 65.563 | 302 | 100 | 3 | 18 | 317 | 90 | 389 | 2.96e-141 | 404 |
| MS.gene33599.t1 | MTR_1g030268 | 87.097 | 217 | 27 | 1 | 18 | 234 | 88 | 303 | 3.95e-133 | 382 |
| MS.gene33599.t1 | MTR_7g087190 | 56.766 | 303 | 128 | 2 | 18 | 317 | 91 | 393 | 7.66e-126 | 365 |
| MS.gene33599.t1 | MTR_8g089805 | 55.369 | 298 | 129 | 3 | 17 | 311 | 19 | 315 | 2.69e-120 | 349 |
| MS.gene33599.t1 | MTR_8g089805 | 55.892 | 297 | 127 | 3 | 18 | 311 | 88 | 383 | 1.03e-119 | 350 |
| MS.gene33599.t1 | MTR_7g033165 | 47.059 | 306 | 150 | 6 | 18 | 317 | 81 | 380 | 1.01e-89 | 273 |
| MS.gene33599.t1 | MTR_6g007090 | 43.322 | 307 | 150 | 7 | 18 | 315 | 87 | 378 | 1.60e-78 | 244 |
| MS.gene33599.t1 | MTR_7g113860 | 44.781 | 297 | 151 | 7 | 18 | 308 | 10 | 299 | 3.26e-76 | 236 |
| MS.gene33599.t1 | MTR_7g113860 | 44.781 | 297 | 151 | 7 | 19 | 309 | 79 | 368 | 3.32e-75 | 236 |
| MS.gene33599.t1 | MTR_7g113860 | 44.932 | 296 | 150 | 7 | 19 | 308 | 85 | 373 | 3.97e-75 | 236 |
| MS.gene33599.t1 | MTR_6g007100 | 39.073 | 302 | 160 | 6 | 19 | 316 | 81 | 362 | 3.58e-72 | 227 |
| MS.gene33599.t1 | MTR_8g038680 | 41.100 | 309 | 159 | 6 | 18 | 315 | 76 | 372 | 1.07e-71 | 226 |
| MS.gene33599.t1 | MTR_7g116870 | 39.274 | 303 | 171 | 6 | 18 | 315 | 81 | 375 | 8.37e-71 | 224 |
| MS.gene33599.t1 | MTR_6g007095 | 41.118 | 304 | 157 | 6 | 19 | 314 | 90 | 379 | 1.07e-68 | 227 |
| MS.gene33599.t1 | MTR_6g007095 | 38.562 | 306 | 153 | 6 | 19 | 316 | 419 | 697 | 3.89e-64 | 214 |
| MS.gene33599.t1 | MTR_1g082390 | 43.403 | 288 | 151 | 8 | 19 | 301 | 81 | 361 | 3.42e-68 | 217 |
| MS.gene33599.t1 | MTR_8g028160 | 38.636 | 308 | 170 | 6 | 18 | 315 | 84 | 382 | 5.34e-67 | 215 |
| MS.gene33599.t1 | MTR_7g033155 | 37.072 | 321 | 171 | 7 | 18 | 315 | 86 | 398 | 1.00e-66 | 214 |
| MS.gene33599.t1 | MTR_7g033150 | 37.097 | 310 | 175 | 7 | 18 | 315 | 83 | 384 | 4.84e-65 | 210 |
| MS.gene33599.t1 | MTR_7g033165 | 47.748 | 222 | 109 | 4 | 18 | 234 | 81 | 300 | 6.79e-64 | 204 |
| MS.gene33599.t1 | MTR_7g111780 | 38.538 | 301 | 163 | 7 | 18 | 316 | 85 | 365 | 2.14e-62 | 202 |
| MS.gene33599.t1 | MTR_7g111780 | 37.676 | 284 | 156 | 5 | 34 | 316 | 3 | 266 | 7.84e-59 | 190 |
| MS.gene33599.t1 | MTR_8g012540 | 38.909 | 275 | 143 | 7 | 18 | 280 | 76 | 337 | 2.62e-51 | 173 |
| MS.gene33599.t1 | MTR_2g015590 | 32.886 | 298 | 176 | 6 | 18 | 307 | 84 | 365 | 5.38e-40 | 144 |
| MS.gene33599.t1 | MTR_2g015650 | 33.663 | 303 | 170 | 12 | 18 | 309 | 84 | 366 | 4.91e-37 | 136 |
| MS.gene33599.t1 | MTR_2g015580 | 33.000 | 300 | 172 | 9 | 18 | 307 | 100 | 380 | 4.08e-36 | 134 |
| MS.gene33599.t1 | MTR_3g463930 | 31.475 | 305 | 184 | 10 | 18 | 309 | 95 | 387 | 1.05e-35 | 133 |
| MS.gene33599.t1 | MTR_3g463960 | 31.596 | 307 | 174 | 11 | 18 | 309 | 95 | 380 | 3.66e-35 | 131 |
| MS.gene33599.t1 | MTR_3g463950 | 31.596 | 307 | 174 | 11 | 18 | 309 | 95 | 380 | 3.66e-35 | 131 |
| MS.gene33599.t1 | MTR_3g463970 | 31.596 | 307 | 174 | 11 | 18 | 309 | 95 | 380 | 3.66e-35 | 131 |
| MS.gene33599.t1 | MTR_3g463940 | 31.596 | 307 | 174 | 11 | 18 | 309 | 95 | 380 | 3.66e-35 | 131 |
| MS.gene33599.t1 | MTR_2g015670 | 32.333 | 300 | 164 | 12 | 18 | 309 | 84 | 352 | 1.35e-34 | 129 |
| MS.gene33599.t1 | MTR_2g015630 | 31.408 | 277 | 164 | 7 | 40 | 309 | 111 | 368 | 1.26e-33 | 127 |
| MS.gene33599.t1 | MTR_2g079090 | 29.470 | 302 | 173 | 10 | 18 | 309 | 80 | 351 | 7.95e-33 | 124 |
| MS.gene33599.t1 | MTR_4g104240 | 30.565 | 301 | 174 | 11 | 19 | 309 | 94 | 369 | 2.84e-32 | 124 |
| MS.gene33599.t1 | MTR_2g079080 | 29.139 | 302 | 174 | 10 | 18 | 309 | 80 | 351 | 3.50e-32 | 123 |
| MS.gene33599.t1 | MTR_0029s0100 | 29.470 | 302 | 173 | 10 | 18 | 309 | 80 | 351 | 3.23e-31 | 120 |
| MS.gene33599.t1 | MTR_3g438030 | 31.410 | 312 | 178 | 12 | 18 | 314 | 81 | 371 | 7.97e-31 | 119 |
| MS.gene33599.t1 | MTR_0029s0050 | 29.139 | 302 | 174 | 10 | 18 | 309 | 80 | 351 | 1.04e-30 | 119 |
| MS.gene33599.t1 | MTR_3g069780 | 30.921 | 304 | 177 | 11 | 18 | 309 | 81 | 363 | 1.24e-29 | 116 |
| MS.gene33599.t1 | MTR_3g069520 | 31.529 | 314 | 176 | 13 | 18 | 314 | 78 | 369 | 2.83e-29 | 115 |
| MS.gene33599.t1 | MTR_2g043980 | 30.619 | 307 | 162 | 11 | 18 | 309 | 83 | 353 | 4.82e-28 | 112 |
| MS.gene33599.t1 | MTR_8g014910 | 29.329 | 283 | 170 | 8 | 20 | 299 | 91 | 346 | 1.86e-27 | 110 |
| MS.gene33599.t1 | MTR_4g056160 | 29.861 | 288 | 174 | 8 | 20 | 304 | 86 | 348 | 2.22e-27 | 110 |
| MS.gene33599.t1 | MTR_4g056280 | 29.720 | 286 | 164 | 8 | 20 | 299 | 89 | 343 | 2.69e-27 | 109 |
| MS.gene33599.t1 | MTR_1g082410 | 30.272 | 294 | 115 | 11 | 23 | 314 | 104 | 309 | 2.80e-27 | 108 |
| MS.gene33599.t1 | MTR_3g448360 | 30.492 | 305 | 179 | 10 | 18 | 309 | 79 | 363 | 3.97e-27 | 109 |
| MS.gene33599.t1 | MTR_8g031430 | 28.070 | 285 | 180 | 7 | 18 | 302 | 90 | 349 | 5.41e-27 | 108 |
| MS.gene33599.t1 | MTR_8g079050 | 26.948 | 308 | 189 | 9 | 3 | 302 | 81 | 360 | 8.26e-27 | 108 |
| MS.gene33599.t1 | MTR_2g100620 | 29.371 | 286 | 168 | 10 | 19 | 299 | 89 | 345 | 1.00e-26 | 108 |
| MS.gene33599.t1 | MTR_8g031420 | 28.417 | 278 | 174 | 8 | 18 | 295 | 88 | 340 | 3.64e-25 | 103 |
| MS.gene33599.t1 | MTR_2g033930 | 31.982 | 222 | 127 | 8 | 90 | 306 | 149 | 351 | 1.18e-24 | 102 |
| MS.gene33599.t1 | MTR_8g031390 | 28.058 | 278 | 174 | 9 | 18 | 295 | 90 | 341 | 9.71e-24 | 100 |
| MS.gene33599.t1 | MTR_8g087890 | 25.676 | 296 | 184 | 6 | 25 | 312 | 89 | 356 | 4.07e-23 | 98.6 |
| MS.gene33599.t1 | MTR_5g074270 | 28.188 | 298 | 177 | 12 | 24 | 315 | 96 | 362 | 5.30e-23 | 98.2 |
| MS.gene33599.t1 | MTR_8g031400 | 28.772 | 285 | 178 | 9 | 18 | 302 | 90 | 349 | 7.48e-23 | 97.8 |
| MS.gene33599.t1 | MTR_1g025720 | 28.520 | 277 | 164 | 8 | 25 | 295 | 97 | 345 | 1.31e-22 | 97.1 |
| MS.gene33599.t1 | MTR_1g025780 | 28.159 | 277 | 168 | 8 | 25 | 299 | 105 | 352 | 1.46e-22 | 96.7 |
| MS.gene33599.t1 | MTR_2g084585 | 27.839 | 273 | 168 | 7 | 30 | 299 | 97 | 343 | 1.61e-22 | 96.7 |
| MS.gene33599.t1 | MTR_8g022810 | 27.645 | 293 | 170 | 10 | 18 | 299 | 94 | 355 | 2.79e-22 | 96.3 |
| MS.gene33599.t1 | MTR_7g116500 | 29.352 | 293 | 159 | 10 | 23 | 303 | 94 | 350 | 5.31e-22 | 95.5 |
| MS.gene33599.t1 | MTR_3g114120 | 28.782 | 271 | 159 | 8 | 25 | 291 | 111 | 351 | 5.75e-22 | 95.1 |
| MS.gene33599.t1 | MTR_0565s0010 | 26.333 | 300 | 181 | 8 | 25 | 313 | 91 | 361 | 7.85e-22 | 94.7 |
| MS.gene33599.t1 | MTR_2g015590 | 29.740 | 269 | 168 | 7 | 18 | 276 | 84 | 341 | 1.18e-21 | 94.0 |
| MS.gene33599.t1 | MTR_1g025760 | 26.502 | 283 | 167 | 10 | 19 | 293 | 138 | 387 | 1.66e-21 | 94.4 |
| MS.gene33599.t1 | MTR_1g025910 | 27.536 | 276 | 171 | 8 | 25 | 299 | 100 | 347 | 2.26e-21 | 93.6 |
| MS.gene33599.t1 | MTR_5g084750 | 27.068 | 266 | 159 | 8 | 35 | 294 | 102 | 338 | 5.44e-21 | 92.4 |
| MS.gene33599.t1 | MTR_5g084770 | 28.125 | 288 | 168 | 12 | 18 | 295 | 80 | 338 | 6.95e-21 | 92.0 |
| MS.gene33599.t1 | MTR_1108s0010 | 30.088 | 226 | 133 | 6 | 81 | 303 | 3 | 206 | 8.17e-21 | 89.4 |
| MS.gene33599.t1 | MTR_1g069175 | 29.766 | 299 | 168 | 12 | 23 | 312 | 95 | 360 | 1.18e-20 | 91.7 |
| MS.gene33599.t1 | MTR_4g122200 | 27.241 | 290 | 176 | 8 | 24 | 306 | 95 | 356 | 1.43e-20 | 91.3 |
| MS.gene33599.t1 | MTR_3g082830 | 26.298 | 289 | 176 | 11 | 24 | 304 | 97 | 356 | 1.48e-20 | 91.3 |
| MS.gene33599.t1 | MTR_7g008060 | 26.897 | 290 | 170 | 9 | 23 | 303 | 81 | 337 | 1.59e-20 | 90.9 |
| MS.gene33599.t1 | MTR_7g116520 | 28.239 | 301 | 169 | 10 | 23 | 312 | 95 | 359 | 2.24e-20 | 90.9 |
| MS.gene33599.t1 | MTR_3g114090 | 26.354 | 277 | 170 | 8 | 19 | 291 | 95 | 341 | 3.07e-20 | 90.1 |
| MS.gene33599.t1 | MTR_1g025680 | 27.240 | 279 | 169 | 8 | 19 | 293 | 93 | 341 | 3.38e-20 | 90.9 |
| MS.gene33599.t1 | MTR_4g019880 | 27.491 | 291 | 167 | 10 | 23 | 302 | 93 | 350 | 3.62e-20 | 90.1 |
| MS.gene33599.t1 | MTR_2g033920 | 27.931 | 290 | 174 | 9 | 24 | 306 | 95 | 356 | 4.90e-20 | 89.7 |
| MS.gene33599.t1 | MTR_5g074210 | 30.233 | 172 | 102 | 5 | 145 | 315 | 64 | 218 | 5.86e-20 | 87.0 |
| MS.gene33599.t1 | MTR_5g022630 | 29.433 | 282 | 162 | 12 | 25 | 298 | 109 | 361 | 6.83e-20 | 89.4 |
| MS.gene33599.t1 | MTR_5g078210 | 27.007 | 274 | 157 | 10 | 40 | 304 | 102 | 341 | 6.84e-20 | 89.4 |
| MS.gene33599.t1 | MTR_1g025700 | 26.087 | 276 | 168 | 9 | 25 | 293 | 110 | 356 | 7.01e-20 | 89.4 |
| MS.gene33599.t1 | MTR_2g044100 | 27.148 | 291 | 186 | 10 | 18 | 305 | 97 | 364 | 7.94e-20 | 89.4 |
| MS.gene33599.t1 | MTR_7g116510 | 26.117 | 291 | 172 | 9 | 23 | 303 | 86 | 343 | 1.05e-19 | 89.0 |
| MS.gene33599.t1 | MTR_8g012520 | 37.008 | 127 | 48 | 3 | 105 | 231 | 7 | 101 | 1.23e-19 | 84.0 |
| MS.gene33599.t1 | MTR_5g009100 | 26.159 | 302 | 189 | 11 | 18 | 312 | 98 | 372 | 1.46e-19 | 88.6 |
| MS.gene33599.t1 | MTR_6g021530 | 26.014 | 296 | 175 | 10 | 23 | 307 | 91 | 353 | 1.47e-19 | 88.6 |
| MS.gene33599.t1 | MTR_5g084790 | 26.217 | 267 | 162 | 8 | 35 | 295 | 104 | 341 | 1.48e-19 | 88.2 |
| MS.gene33599.t1 | MTR_7g116570 | 25.952 | 289 | 174 | 8 | 23 | 303 | 95 | 351 | 1.54e-19 | 88.6 |
| MS.gene33599.t1 | MTR_3g024510 | 27.402 | 281 | 163 | 9 | 25 | 295 | 97 | 346 | 1.68e-19 | 88.2 |
| MS.gene33599.t1 | MTR_5g093090 | 28.522 | 291 | 167 | 12 | 24 | 305 | 91 | 349 | 4.69e-19 | 87.0 |
| MS.gene33599.t1 | MTR_3g464730 | 26.619 | 278 | 166 | 10 | 25 | 295 | 92 | 338 | 5.95e-19 | 86.7 |
| MS.gene33599.t1 | MTR_3g052480 | 28.413 | 271 | 160 | 9 | 36 | 302 | 112 | 352 | 6.67e-19 | 86.7 |
| MS.gene33599.t1 | MTR_3g098270 | 25.581 | 301 | 181 | 9 | 18 | 308 | 88 | 355 | 1.02e-18 | 86.3 |
| MS.gene33599.t1 | MTR_5g022640 | 26.829 | 287 | 177 | 9 | 24 | 306 | 107 | 364 | 1.03e-18 | 85.9 |
| MS.gene33599.t1 | MTR_3g052490 | 29.391 | 279 | 158 | 13 | 36 | 307 | 111 | 357 | 1.26e-18 | 85.9 |
| MS.gene33599.t1 | MTR_8g075220 | 26.855 | 283 | 173 | 10 | 24 | 299 | 103 | 358 | 1.31e-18 | 85.9 |
| MS.gene33599.t1 | MTR_0127s0040 | 26.818 | 220 | 137 | 5 | 100 | 313 | 33 | 234 | 5.35e-18 | 82.0 |
| MS.gene33599.t1 | MTR_3g052580 | 28.231 | 294 | 169 | 13 | 24 | 307 | 90 | 351 | 9.33e-18 | 83.6 |
| MS.gene33599.t1 | MTR_3g052580 | 28.231 | 294 | 169 | 13 | 24 | 307 | 91 | 352 | 1.05e-17 | 83.2 |
| MS.gene33599.t1 | MTR_3g005660 | 25.260 | 289 | 188 | 8 | 25 | 307 | 95 | 361 | 1.77e-17 | 82.4 |
| MS.gene33599.t1 | MTR_3g435540 | 25.000 | 284 | 178 | 9 | 23 | 299 | 81 | 336 | 1.93e-17 | 82.4 |
| MS.gene33599.t1 | MTR_8g031390 | 26.482 | 253 | 164 | 8 | 18 | 270 | 90 | 320 | 4.95e-17 | 80.5 |
| MS.gene33599.t1 | MTR_1g024890 | 26.621 | 293 | 167 | 10 | 23 | 303 | 93 | 349 | 1.11e-16 | 80.1 |
| MS.gene33599.t1 | MTR_4g087985 | 25.839 | 298 | 172 | 11 | 24 | 302 | 99 | 366 | 1.28e-16 | 80.1 |
| MS.gene33599.t1 | MTR_2g015080 | 25.965 | 285 | 168 | 10 | 25 | 296 | 103 | 357 | 1.54e-16 | 79.7 |
| MS.gene33599.t1 | MTR_8g022790 | 27.138 | 269 | 161 | 8 | 37 | 302 | 109 | 345 | 2.33e-16 | 79.3 |
| MS.gene33599.t1 | MTR_1g079540 | 27.397 | 292 | 166 | 12 | 23 | 303 | 92 | 348 | 2.99e-16 | 79.0 |
| MS.gene33599.t1 | MTR_8g075200 | 25.087 | 287 | 168 | 11 | 24 | 299 | 104 | 354 | 6.27e-16 | 78.2 |
| MS.gene33599.t1 | MTR_5g083040 | 29.048 | 210 | 126 | 7 | 100 | 302 | 157 | 350 | 1.92e-15 | 76.6 |
| MS.gene33599.t1 | MTR_0009s0250 | 28.319 | 226 | 139 | 5 | 23 | 245 | 90 | 295 | 3.73e-15 | 75.5 |
| MS.gene33599.t1 | MTR_3g005650 | 24.834 | 302 | 188 | 10 | 18 | 312 | 81 | 350 | 1.15e-14 | 74.3 |
| MS.gene33599.t1 | MTR_5g087690 | 25.329 | 304 | 184 | 11 | 18 | 310 | 93 | 364 | 1.69e-14 | 73.9 |
| MS.gene33599.t1 | MTR_2g461580 | 24.545 | 220 | 135 | 3 | 101 | 316 | 157 | 349 | 5.79e-14 | 72.0 |
| MS.gene33599.t1 | MTR_4g108690 | 22.837 | 289 | 188 | 9 | 18 | 299 | 80 | 340 | 2.59e-13 | 70.1 |
| MS.gene33599.t1 | MTR_8g075230 | 24.912 | 285 | 175 | 10 | 18 | 295 | 93 | 345 | 3.83e-13 | 69.7 |
| MS.gene33599.t1 | MTR_5g078210 | 30.935 | 139 | 85 | 3 | 101 | 234 | 152 | 284 | 4.71e-13 | 69.3 |
| MS.gene33599.t1 | MTR_8g074560 | 23.103 | 290 | 167 | 11 | 29 | 302 | 103 | 352 | 5.79e-13 | 69.3 |
| MS.gene33599.t1 | MTR_6g049230 | 35.644 | 101 | 62 | 1 | 146 | 246 | 73 | 170 | 9.13e-13 | 66.2 |
| MS.gene33599.t1 | MTR_2g033920 | 27.982 | 218 | 133 | 7 | 24 | 234 | 95 | 295 | 1.48e-12 | 67.4 |
| MS.gene33599.t1 | MTR_2g017965 | 24.731 | 279 | 167 | 13 | 25 | 295 | 93 | 336 | 1.85e-12 | 67.8 |
| MS.gene33599.t1 | MTR_2g043990 | 29.258 | 229 | 113 | 10 | 18 | 233 | 145 | 337 | 2.16e-12 | 67.4 |
| MS.gene33599.t1 | MTR_2g058390 | 44.444 | 63 | 35 | 0 | 102 | 164 | 7 | 69 | 3.04e-12 | 61.6 |
| MS.gene33599.t1 | MTR_2g017955 | 22.945 | 292 | 184 | 9 | 25 | 307 | 92 | 351 | 5.77e-11 | 63.2 |
| MS.gene33599.t1 | MTR_1g092750 | 24.113 | 282 | 164 | 9 | 27 | 296 | 96 | 339 | 7.90e-11 | 62.8 |
| MS.gene33599.t1 | MTR_4g036385 | 29.060 | 117 | 72 | 2 | 183 | 299 | 22 | 127 | 8.48e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33599.t1 | AT3G26430 | 52.145 | 303 | 141 | 3 | 18 | 317 | 79 | 380 | 2.00e-112 | 331 |
| MS.gene33599.t1 | AT1G67830 | 51.974 | 304 | 134 | 4 | 18 | 318 | 78 | 372 | 6.95e-112 | 329 |
| MS.gene33599.t1 | AT5G14450 | 46.645 | 313 | 143 | 6 | 18 | 318 | 89 | 389 | 1.23e-93 | 283 |
| MS.gene33599.t1 | AT3G27950 | 45.752 | 306 | 141 | 8 | 19 | 315 | 81 | 370 | 1.95e-78 | 244 |
| MS.gene33599.t1 | AT1G54790 | 44.674 | 291 | 150 | 8 | 23 | 308 | 85 | 369 | 2.11e-74 | 234 |
| MS.gene33599.t1 | AT1G54790 | 44.674 | 291 | 150 | 8 | 23 | 308 | 86 | 370 | 5.37e-74 | 233 |
| MS.gene33599.t1 | AT1G54790 | 41.009 | 317 | 150 | 9 | 23 | 308 | 85 | 395 | 1.16e-68 | 220 |
| MS.gene33599.t1 | AT3G05180 | 41.297 | 293 | 162 | 5 | 24 | 312 | 92 | 378 | 5.38e-67 | 214 |
| MS.gene33599.t1 | AT1G56670 | 39.867 | 301 | 162 | 7 | 19 | 317 | 90 | 373 | 1.78e-65 | 210 |
| MS.gene33599.t1 | AT4G01130 | 38.487 | 304 | 176 | 7 | 18 | 315 | 82 | 380 | 1.08e-64 | 209 |
| MS.gene33599.t1 | AT4G01130 | 38.462 | 299 | 173 | 7 | 23 | 315 | 1 | 294 | 1.38e-64 | 206 |
| MS.gene33599.t1 | AT1G09390 | 39.130 | 299 | 163 | 6 | 19 | 315 | 87 | 368 | 4.76e-63 | 204 |
| MS.gene33599.t1 | AT3G62280 | 37.171 | 304 | 160 | 9 | 17 | 313 | 84 | 363 | 7.97e-54 | 180 |
| MS.gene33599.t1 | AT1G28600 | 34.416 | 308 | 174 | 8 | 18 | 317 | 85 | 372 | 8.37e-46 | 160 |
| MS.gene33599.t1 | AT4G01130 | 38.288 | 222 | 127 | 6 | 18 | 234 | 82 | 298 | 9.80e-44 | 153 |
| MS.gene33599.t1 | AT1G56670 | 38.710 | 217 | 123 | 4 | 19 | 234 | 90 | 297 | 7.47e-42 | 147 |
| MS.gene33599.t1 | AT1G28580 | 31.333 | 300 | 179 | 7 | 18 | 308 | 10 | 291 | 6.16e-41 | 145 |
| MS.gene33599.t1 | AT1G28650 | 33.775 | 302 | 167 | 8 | 18 | 307 | 91 | 371 | 7.43e-41 | 147 |
| MS.gene33599.t1 | AT1G28610 | 32.776 | 299 | 173 | 8 | 18 | 307 | 85 | 364 | 1.89e-40 | 145 |
| MS.gene33599.t1 | AT1G28580 | 31.333 | 300 | 179 | 7 | 18 | 308 | 91 | 372 | 3.19e-40 | 145 |
| MS.gene33599.t1 | AT1G31550 | 32.890 | 301 | 172 | 8 | 18 | 308 | 90 | 370 | 1.13e-39 | 144 |
| MS.gene33599.t1 | AT1G28640 | 31.788 | 302 | 173 | 7 | 18 | 307 | 89 | 369 | 4.41e-39 | 142 |
| MS.gene33599.t1 | AT1G28670 | 33.893 | 298 | 173 | 8 | 18 | 307 | 89 | 370 | 1.10e-38 | 141 |
| MS.gene33599.t1 | AT1G28590 | 32.000 | 300 | 177 | 7 | 18 | 308 | 90 | 371 | 1.98e-37 | 138 |
| MS.gene33599.t1 | AT1G31550 | 31.667 | 300 | 174 | 8 | 18 | 308 | 90 | 367 | 3.50e-36 | 134 |
| MS.gene33599.t1 | AT2G27360 | 31.494 | 308 | 181 | 9 | 18 | 315 | 87 | 374 | 4.62e-35 | 131 |
| MS.gene33599.t1 | AT1G28660 | 30.921 | 304 | 172 | 9 | 18 | 307 | 89 | 368 | 1.34e-34 | 130 |
| MS.gene33599.t1 | AT1G28660 | 31.475 | 305 | 170 | 10 | 18 | 307 | 89 | 369 | 5.24e-34 | 128 |
| MS.gene33599.t1 | AT1G28570 | 29.139 | 302 | 183 | 8 | 18 | 308 | 88 | 369 | 1.37e-33 | 127 |
| MS.gene33599.t1 | AT5G45910 | 31.579 | 304 | 177 | 10 | 18 | 307 | 83 | 369 | 5.35e-33 | 125 |
| MS.gene33599.t1 | AT3G62280 | 35.556 | 225 | 129 | 6 | 17 | 238 | 84 | 295 | 7.34e-33 | 123 |
| MS.gene33599.t1 | AT2G23540 | 28.846 | 312 | 178 | 11 | 3 | 302 | 92 | 371 | 2.16e-30 | 119 |
| MS.gene33599.t1 | AT3G48460 | 27.483 | 302 | 182 | 8 | 18 | 307 | 92 | 368 | 7.20e-30 | 117 |
| MS.gene33599.t1 | AT1G28570 | 30.882 | 204 | 128 | 3 | 110 | 308 | 11 | 206 | 1.15e-28 | 110 |
| MS.gene33599.t1 | AT1G28570 | 27.083 | 288 | 188 | 6 | 27 | 308 | 26 | 297 | 1.29e-28 | 112 |
| MS.gene33599.t1 | AT5G03980 | 30.688 | 189 | 119 | 3 | 110 | 295 | 127 | 306 | 4.98e-25 | 103 |
| MS.gene33599.t1 | AT3G16370 | 30.292 | 274 | 161 | 9 | 25 | 295 | 94 | 340 | 4.38e-24 | 100 |
| MS.gene33599.t1 | AT3G50400 | 26.752 | 314 | 183 | 12 | 3 | 302 | 78 | 358 | 5.85e-24 | 100 |
| MS.gene33599.t1 | AT4G18970 | 25.725 | 276 | 175 | 6 | 25 | 295 | 87 | 337 | 4.60e-23 | 98.2 |
| MS.gene33599.t1 | AT5G15720 | 25.243 | 309 | 194 | 8 | 1 | 295 | 25 | 310 | 5.61e-23 | 97.4 |
| MS.gene33599.t1 | AT4G18970 | 25.725 | 276 | 175 | 6 | 25 | 295 | 87 | 337 | 9.33e-23 | 98.2 |
| MS.gene33599.t1 | AT5G22810 | 28.472 | 288 | 170 | 9 | 19 | 299 | 92 | 350 | 1.29e-22 | 97.1 |
| MS.gene33599.t1 | AT5G03820 | 27.018 | 285 | 175 | 9 | 20 | 299 | 92 | 348 | 1.33e-22 | 97.1 |
| MS.gene33599.t1 | AT5G15720 | 26.354 | 277 | 174 | 7 | 24 | 295 | 90 | 341 | 2.15e-22 | 96.3 |
| MS.gene33599.t1 | AT5G03820 | 27.018 | 285 | 175 | 9 | 20 | 299 | 120 | 376 | 2.26e-22 | 96.7 |
| MS.gene33599.t1 | AT1G75900 | 27.273 | 275 | 166 | 9 | 25 | 295 | 107 | 351 | 3.03e-22 | 95.9 |
| MS.gene33599.t1 | AT5G03810 | 25.347 | 288 | 175 | 9 | 20 | 299 | 89 | 344 | 3.26e-22 | 95.9 |
| MS.gene33599.t1 | AT1G59406 | 27.273 | 275 | 172 | 9 | 25 | 299 | 94 | 340 | 4.80e-22 | 95.1 |
| MS.gene33599.t1 | AT1G59030 | 27.273 | 275 | 172 | 9 | 25 | 299 | 94 | 340 | 4.80e-22 | 95.1 |
| MS.gene33599.t1 | AT1G58725 | 27.273 | 275 | 172 | 9 | 25 | 299 | 94 | 340 | 4.80e-22 | 95.1 |
| MS.gene33599.t1 | AT1G29670 | 25.725 | 276 | 174 | 7 | 25 | 295 | 90 | 339 | 2.73e-21 | 93.2 |
| MS.gene33599.t1 | AT5G45670 | 26.449 | 276 | 173 | 7 | 25 | 295 | 88 | 338 | 4.86e-21 | 92.8 |
| MS.gene33599.t1 | AT5G40990 | 27.586 | 290 | 183 | 8 | 18 | 302 | 90 | 357 | 4.92e-21 | 92.8 |
| MS.gene33599.t1 | AT2G42990 | 27.407 | 270 | 161 | 10 | 35 | 298 | 100 | 340 | 6.46e-21 | 92.0 |
| MS.gene33599.t1 | AT5G42170 | 27.437 | 277 | 169 | 10 | 25 | 299 | 114 | 360 | 6.87e-21 | 92.4 |
| MS.gene33599.t1 | AT1G29670 | 25.725 | 276 | 174 | 7 | 25 | 295 | 158 | 407 | 7.47e-21 | 92.8 |
| MS.gene33599.t1 | AT1G75880 | 27.622 | 286 | 167 | 9 | 20 | 299 | 115 | 366 | 8.59e-21 | 92.0 |
| MS.gene33599.t1 | AT1G75880 | 27.622 | 286 | 166 | 10 | 20 | 299 | 115 | 365 | 9.38e-21 | 92.0 |
| MS.gene33599.t1 | AT3G04290 | 28.814 | 295 | 158 | 11 | 23 | 303 | 90 | 346 | 2.38e-20 | 90.9 |
| MS.gene33599.t1 | AT4G28780 | 26.990 | 289 | 171 | 8 | 23 | 303 | 92 | 348 | 3.22e-20 | 90.5 |
| MS.gene33599.t1 | AT4G10950 | 25.497 | 302 | 191 | 9 | 18 | 312 | 123 | 397 | 3.71e-20 | 90.5 |
| MS.gene33599.t1 | AT5G45950 | 26.408 | 284 | 171 | 11 | 18 | 295 | 92 | 343 | 4.57e-20 | 89.7 |
| MS.gene33599.t1 | AT2G04570 | 25.524 | 286 | 182 | 10 | 24 | 304 | 87 | 346 | 4.69e-20 | 89.7 |
| MS.gene33599.t1 | AT4G26790 | 27.473 | 273 | 159 | 11 | 35 | 299 | 101 | 342 | 6.68e-20 | 89.4 |
| MS.gene33599.t1 | AT4G26790 | 27.473 | 273 | 159 | 11 | 35 | 299 | 101 | 342 | 6.68e-20 | 89.4 |
| MS.gene33599.t1 | AT4G10950 | 25.589 | 297 | 187 | 9 | 23 | 312 | 124 | 393 | 7.01e-20 | 89.7 |
| MS.gene33599.t1 | AT1G20120 | 28.028 | 289 | 172 | 12 | 25 | 306 | 142 | 401 | 2.30e-19 | 88.2 |
| MS.gene33599.t1 | AT1G20130 | 27.857 | 280 | 166 | 10 | 25 | 295 | 268 | 520 | 2.63e-19 | 88.6 |
| MS.gene33599.t1 | AT1G20130 | 27.857 | 280 | 166 | 10 | 25 | 295 | 248 | 500 | 2.70e-19 | 88.6 |
| MS.gene33599.t1 | AT5G63170 | 27.698 | 278 | 148 | 11 | 20 | 291 | 91 | 321 | 5.97e-19 | 86.3 |
| MS.gene33599.t1 | AT1G53990 | 28.070 | 285 | 178 | 8 | 23 | 302 | 86 | 348 | 7.70e-19 | 86.3 |
| MS.gene33599.t1 | AT1G54030 | 28.014 | 282 | 149 | 8 | 18 | 292 | 103 | 337 | 7.79e-19 | 87.0 |
| MS.gene33599.t1 | AT1G06990 | 24.638 | 276 | 176 | 9 | 24 | 295 | 100 | 347 | 2.31e-18 | 85.1 |
| MS.gene33599.t1 | AT1G53940 | 28.421 | 285 | 177 | 9 | 23 | 302 | 97 | 359 | 2.79e-18 | 84.7 |
| MS.gene33599.t1 | AT5G33370 | 26.557 | 305 | 169 | 12 | 15 | 303 | 82 | 347 | 3.54e-18 | 84.3 |
| MS.gene33599.t1 | AT1G75890 | 25.623 | 281 | 170 | 10 | 20 | 295 | 111 | 357 | 4.01e-18 | 84.3 |
| MS.gene33599.t1 | AT1G75890 | 25.623 | 281 | 170 | 10 | 20 | 295 | 140 | 386 | 4.31e-18 | 84.3 |
| MS.gene33599.t1 | AT5G18430 | 25.347 | 288 | 176 | 8 | 23 | 302 | 90 | 346 | 7.85e-18 | 83.6 |
| MS.gene33599.t1 | AT5G37690 | 26.056 | 284 | 167 | 10 | 24 | 299 | 90 | 338 | 8.23e-18 | 83.2 |
| MS.gene33599.t1 | AT5G37690 | 26.056 | 284 | 167 | 10 | 24 | 299 | 82 | 330 | 9.05e-18 | 83.2 |
| MS.gene33599.t1 | AT1G20132 | 30.846 | 201 | 112 | 8 | 103 | 295 | 189 | 370 | 1.09e-17 | 83.2 |
| MS.gene33599.t1 | AT3G53100 | 26.667 | 270 | 165 | 9 | 35 | 299 | 101 | 342 | 1.10e-17 | 82.8 |
| MS.gene33599.t1 | AT1G58520 | 26.182 | 275 | 168 | 10 | 25 | 299 | 94 | 333 | 1.29e-17 | 82.8 |
| MS.gene33599.t1 | AT1G58525 | 26.182 | 275 | 168 | 10 | 25 | 299 | 94 | 333 | 1.29e-17 | 82.8 |
| MS.gene33599.t1 | AT2G30220 | 25.338 | 296 | 187 | 10 | 3 | 293 | 76 | 342 | 2.86e-17 | 81.6 |
| MS.gene33599.t1 | AT1G29660 | 24.555 | 281 | 172 | 8 | 25 | 295 | 90 | 340 | 3.39e-17 | 81.6 |
| MS.gene33599.t1 | AT3G14225 | 29.021 | 286 | 174 | 9 | 23 | 302 | 95 | 357 | 3.72e-17 | 81.6 |
| MS.gene33599.t1 | AT2G30310 | 24.830 | 294 | 187 | 9 | 3 | 291 | 77 | 341 | 3.81e-17 | 81.6 |
| MS.gene33599.t1 | AT1G33811 | 24.286 | 280 | 179 | 7 | 25 | 295 | 93 | 348 | 4.86e-17 | 81.3 |
| MS.gene33599.t1 | AT1G75890 | 24.828 | 290 | 174 | 10 | 20 | 295 | 111 | 370 | 5.84e-17 | 81.3 |
| MS.gene33599.t1 | AT2G19050 | 26.027 | 292 | 166 | 11 | 25 | 307 | 90 | 340 | 6.44e-17 | 80.9 |
| MS.gene33599.t1 | AT5G45960 | 26.549 | 226 | 147 | 9 | 28 | 246 | 110 | 323 | 7.71e-17 | 80.9 |
| MS.gene33599.t1 | AT5G08460 | 25.413 | 303 | 187 | 10 | 23 | 313 | 106 | 381 | 1.00e-16 | 80.5 |
| MS.gene33599.t1 | AT1G58430 | 24.549 | 277 | 175 | 8 | 19 | 290 | 94 | 341 | 1.89e-16 | 79.3 |
| MS.gene33599.t1 | AT1G53920 | 23.723 | 274 | 184 | 7 | 18 | 289 | 101 | 351 | 2.58e-16 | 79.3 |
| MS.gene33599.t1 | AT3G14225 | 29.514 | 288 | 174 | 11 | 23 | 302 | 95 | 361 | 2.68e-16 | 79.3 |
| MS.gene33599.t1 | AT2G24560 | 27.305 | 282 | 161 | 12 | 19 | 290 | 93 | 340 | 4.18e-16 | 78.6 |
| MS.gene33599.t1 | AT2G31550 | 28.000 | 175 | 106 | 6 | 135 | 304 | 58 | 217 | 4.74e-16 | 76.3 |
| MS.gene33599.t1 | AT2G19060 | 25.902 | 305 | 167 | 13 | 18 | 307 | 81 | 341 | 6.33e-16 | 77.8 |
| MS.gene33599.t1 | AT1G71691 | 24.823 | 282 | 181 | 8 | 18 | 295 | 106 | 360 | 7.40e-16 | 77.8 |
| MS.gene33599.t1 | AT1G71691 | 24.742 | 291 | 188 | 9 | 19 | 305 | 6 | 269 | 1.21e-15 | 76.3 |
| MS.gene33599.t1 | AT1G73610 | 26.259 | 278 | 161 | 8 | 25 | 299 | 99 | 335 | 1.48e-15 | 76.6 |
| MS.gene33599.t1 | AT2G31540 | 28.000 | 175 | 106 | 6 | 135 | 304 | 199 | 358 | 2.30e-15 | 76.3 |
| MS.gene33599.t1 | AT5G55050 | 30.144 | 209 | 118 | 8 | 101 | 301 | 171 | 359 | 4.01e-15 | 75.9 |
| MS.gene33599.t1 | AT3G14820 | 24.727 | 275 | 172 | 8 | 26 | 295 | 93 | 337 | 4.01e-15 | 75.5 |
| MS.gene33599.t1 | AT5G15720 | 25.463 | 216 | 143 | 5 | 24 | 234 | 90 | 292 | 7.16e-15 | 74.3 |
| MS.gene33599.t1 | AT1G23500 | 28.390 | 236 | 131 | 8 | 71 | 302 | 138 | 339 | 7.41e-15 | 74.7 |
| MS.gene33599.t1 | AT1G54020 | 25.000 | 292 | 172 | 9 | 24 | 312 | 9 | 256 | 1.58e-14 | 73.2 |
| MS.gene33599.t1 | AT1G54020 | 25.000 | 292 | 172 | 9 | 24 | 312 | 9 | 256 | 1.58e-14 | 73.2 |
| MS.gene33599.t1 | AT1G54020 | 25.000 | 292 | 172 | 9 | 24 | 312 | 9 | 256 | 1.58e-14 | 73.2 |
| MS.gene33599.t1 | AT5G41890 | 25.000 | 312 | 195 | 12 | 3 | 302 | 75 | 359 | 1.95e-14 | 73.6 |
| MS.gene33599.t1 | AT1G71250 | 24.422 | 303 | 182 | 11 | 18 | 308 | 92 | 359 | 4.17e-14 | 72.8 |
| MS.gene33599.t1 | AT1G71120 | 23.986 | 296 | 168 | 8 | 23 | 302 | 88 | 342 | 4.27e-14 | 72.4 |
| MS.gene33599.t1 | AT1G54020 | 24.497 | 298 | 183 | 8 | 18 | 312 | 84 | 342 | 4.37e-14 | 72.8 |
| MS.gene33599.t1 | AT1G54020 | 27.273 | 220 | 137 | 8 | 98 | 312 | 6 | 207 | 1.24e-13 | 69.7 |
| MS.gene33599.t1 | AT3G43550 | 26.190 | 210 | 138 | 6 | 25 | 234 | 94 | 286 | 2.04e-13 | 69.7 |
| MS.gene33599.t1 | AT1G74460 | 25.564 | 266 | 160 | 9 | 37 | 295 | 98 | 332 | 2.93e-13 | 70.1 |
| MS.gene33599.t1 | AT1G54010 | 24.749 | 299 | 186 | 10 | 18 | 312 | 87 | 350 | 2.98e-13 | 70.1 |
| MS.gene33599.t1 | AT4G16233 | 31.746 | 126 | 75 | 1 | 181 | 306 | 4 | 118 | 4.36e-13 | 65.9 |
| MS.gene33599.t1 | AT2G40250 | 33.645 | 107 | 66 | 2 | 144 | 246 | 207 | 312 | 1.57e-12 | 67.8 |
| MS.gene33599.t1 | AT2G19050 | 26.108 | 203 | 122 | 6 | 25 | 221 | 90 | 270 | 4.64e-12 | 65.9 |
| MS.gene33599.t1 | AT1G20135 | 24.286 | 280 | 165 | 9 | 20 | 296 | 92 | 327 | 1.00e-11 | 65.5 |
| MS.gene33599.t1 | AT2G24560 | 27.049 | 244 | 146 | 10 | 3 | 236 | 77 | 298 | 1.78e-11 | 64.3 |
| MS.gene33599.t1 | AT4G30140 | 28.095 | 210 | 122 | 7 | 104 | 307 | 154 | 340 | 5.53e-11 | 63.2 |
Find 72 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTACCATTTATGTTTA+TGG | 0.138517 | 1.1:-15888252 | None:intergenic |
| TGGATGTGTACCTTTAATTT+TGG | 0.167825 | 1.1:+15887784 | MS.gene33599:CDS |
| TATAAAATTCTTTACTATAT+CGG | 0.215235 | 1.1:-15887462 | None:intergenic |
| ACCAATATCAAATGTGTATA+AGG | 0.220968 | 1.1:-15887375 | None:intergenic |
| AACCATCTACTAGAATAATA+TGG | 0.227325 | 1.1:+15888297 | MS.gene33599:CDS |
| ATTTAGGGGCAAGGTCATTT+TGG | 0.232450 | 1.1:+15887741 | MS.gene33599:CDS |
| TTTGGAATAATAATCTTCTT+TGG | 0.255011 | 1.1:-15887351 | None:intergenic |
| ATCTAGAACATATACAATTT+AGG | 0.266079 | 1.1:+15887725 | MS.gene33599:intron |
| TACTGAACCTGAAGGGAAAA+TGG | 0.271054 | 1.1:-15887131 | None:intergenic |
| GGAAAATTGGCCAAAATTAA+AGG | 0.278464 | 1.1:-15887794 | None:intergenic |
| CTTTATAGCAGATGGAAAAT+TGG | 0.280511 | 1.1:-15887807 | None:intergenic |
| TTGGAATAATAATCTTCTTT+GGG | 0.286703 | 1.1:-15887350 | None:intergenic |
| TCCCATATTATTCTAGTAGA+TGG | 0.294746 | 1.1:-15888299 | None:intergenic |
| TACCTAAAACAAGGTTCATT+AGG | 0.300155 | 1.1:+15887174 | MS.gene33599:CDS |
| ATCCTCCCATTCCACTAAAT+AGG | 0.303807 | 1.1:+15888390 | MS.gene33599:CDS |
| GATGTAGATGGGTTTGTTAT+TGG | 0.308914 | 1.1:-15886877 | None:intergenic |
| GCCTTATACACATTTGATAT+TGG | 0.309552 | 1.1:+15887374 | MS.gene33599:CDS |
| AGTCCATATCTTGATTCTCT+TGG | 0.320911 | 1.1:+15887017 | MS.gene33599:CDS |
| ATCAAGATATGGACTTAGAT+AGG | 0.323465 | 1.1:-15887009 | None:intergenic |
| CCTATATAGTGTGATGTAGA+TGG | 0.325887 | 1.1:-15886889 | None:intergenic |
| TCTAGAACATATACAATTTA+GGG | 0.329938 | 1.1:+15887726 | MS.gene33599:intron |
| CTGTAACATGCCCTATTTAG+TGG | 0.330204 | 1.1:-15888401 | None:intergenic |
| GGAGCAACCATAAACATAAA+TGG | 0.333844 | 1.1:+15888245 | MS.gene33599:CDS |
| GTCTTTGATCAAATCTCTAC+TGG | 0.362400 | 1.1:+15888356 | MS.gene33599:CDS |
| ATCAAATGTGTATAAGGCTT+TGG | 0.373582 | 1.1:-15887369 | None:intergenic |
| ATAAAATTCTTTACTATATC+GGG | 0.374442 | 1.1:-15887461 | None:intergenic |
| TCCTCCCATTCCACTAAATA+GGG | 0.392622 | 1.1:+15888391 | MS.gene33599:CDS |
| ACCTAAAACAAGGTTCATTA+GGG | 0.406556 | 1.1:+15887175 | MS.gene33599:CDS |
| ATACATAACACTGGACCAAT+TGG | 0.419424 | 1.1:+15887764 | MS.gene33599:CDS |
| GTCCATATCTTGATTCTCTT+GGG | 0.422681 | 1.1:+15887018 | MS.gene33599:CDS |
| ACCATCTACTAGAATAATAT+GGG | 0.442115 | 1.1:+15888298 | MS.gene33599:CDS |
| CCATCTACATCACACTATAT+AGG | 0.446253 | 1.1:+15886889 | MS.gene33599:CDS |
| GGTCAAAATGATCTTACTGC+TGG | 0.466959 | 1.1:+15887395 | MS.gene33599:CDS |
| ACAAGGTTCATTAGGGATCA+AGG | 0.468253 | 1.1:+15887182 | MS.gene33599:CDS |
| CATGCCCTATTTAGTGGAAT+GGG | 0.472312 | 1.1:-15888395 | None:intergenic |
| ATTAAAGGTACACATCCAAT+TGG | 0.476146 | 1.1:-15887779 | None:intergenic |
| AAGCCCTAGCTCATCTTCGC+AGG | 0.481072 | 1.1:+15887894 | MS.gene33599:CDS |
| ACATGCCCTATTTAGTGGAA+TGG | 0.489175 | 1.1:-15888396 | None:intergenic |
| AATGGTACAAACACTGTTGT+GGG | 0.499739 | 1.1:+15888263 | MS.gene33599:CDS |
| TACAACTATAACATTAGTGC+TGG | 0.500660 | 1.1:+15888218 | MS.gene33599:CDS |
| CTAGGTATGATATTACTAGT+AGG | 0.500699 | 1.1:-15887095 | None:intergenic |
| GGTGCAAACTTTGCAACAGC+AGG | 0.502492 | 1.1:+15887056 | MS.gene33599:CDS |
| TAACTATCCTTTATAGCAGA+TGG | 0.504462 | 1.1:-15887815 | None:intergenic |
| CTAGTGGCTTGTTGTGGCAA+TGG | 0.508528 | 1.1:+15888188 | MS.gene33599:CDS |
| GACCCAAGAGAATCAAGATA+TGG | 0.518864 | 1.1:-15887020 | None:intergenic |
| AAATGGTACAAACACTGTTG+TGG | 0.519598 | 1.1:+15888262 | MS.gene33599:CDS |
| GATCCCTGCGAAGATGAGCT+AGG | 0.520958 | 1.1:-15887898 | None:intergenic |
| CTATATAGTGTGATGTAGAT+GGG | 0.535053 | 1.1:-15886888 | None:intergenic |
| TCTGCTATAAAGGATAGTTA+TGG | 0.535982 | 1.1:+15887818 | MS.gene33599:CDS |
| TATAACATTAGTGCTGGCTG+TGG | 0.541420 | 1.1:+15888224 | MS.gene33599:CDS |
| TCAAGATATGGACTTAGATA+GGG | 0.548964 | 1.1:-15887008 | None:intergenic |
| TGGAATAATAATCTTCTTTG+GGG | 0.555591 | 1.1:-15887349 | None:intergenic |
| CTTGGGTCAAACTTCACACA+TGG | 0.560034 | 1.1:+15887035 | MS.gene33599:CDS |
| ACATATACAATTTAGGGGCA+AGG | 0.581070 | 1.1:+15887732 | MS.gene33599:CDS |
| AGGGTTTGAACTTCCACTAG+TGG | 0.582113 | 1.1:+15888172 | MS.gene33599:intron |
| ATCCCTGCGAAGATGAGCTA+GGG | 0.588235 | 1.1:-15887897 | None:intergenic |
| CTTCCACTAGTGGCTTGTTG+TGG | 0.588534 | 1.1:+15888182 | MS.gene33599:CDS |
| ACATATGTGATTGCTGCTAG+TGG | 0.594418 | 1.1:-15887923 | None:intergenic |
| TTGCCACAACAAGCCACTAG+TGG | 0.603337 | 1.1:-15888185 | None:intergenic |
| AAGATTTCATACCTAAAACA+AGG | 0.612054 | 1.1:+15887165 | MS.gene33599:CDS |
| AGCCCTAGCTCATCTTCGCA+GGG | 0.617389 | 1.1:+15887895 | MS.gene33599:CDS |
| GCCCTATTTAGTGGAATGGG+AGG | 0.622277 | 1.1:-15888392 | None:intergenic |
| ACACTATATAGGAGCTCACA+TGG | 0.628900 | 1.1:+15886900 | MS.gene33599:CDS |
| GTGCAAACTTTGCAACAGCA+GGG | 0.631688 | 1.1:+15887057 | MS.gene33599:CDS |
| TCTACTAGAATAATATGGGA+TGG | 0.641361 | 1.1:+15888302 | MS.gene33599:CDS |
| ACTAGTAATATCATACCTAG+TGG | 0.650422 | 1.1:+15887098 | MS.gene33599:CDS |
| AATGGACTAAACATTCCACT+AGG | 0.660611 | 1.1:-15887113 | None:intergenic |
| TTGAATGTACTGAACCTGAA+GGG | 0.661770 | 1.1:-15887138 | None:intergenic |
| GTGGCTTGTTGTGGCAATGG+AGG | 0.663762 | 1.1:+15888191 | MS.gene33599:CDS |
| ATTGAATGTACTGAACCTGA+AGG | 0.669376 | 1.1:-15887139 | None:intergenic |
| CTAGAACATATACAATTTAG+GGG | 0.696032 | 1.1:+15887727 | MS.gene33599:intron |
| GGATGGTACTCATTACACAG+AGG | 0.801423 | 1.1:+15888319 | MS.gene33599:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATTCTTTACTATAT+CGG | - | chr1.1:15887465-15887484 | None:intergenic | 10.0% |
| !!! | AATTATTTCTATATTTATGA+AGG | + | chr1.1:15886937-15886956 | MS.gene33599:intron | 10.0% |
| !!! | ATTATTTCTATATTTATGAA+GGG | + | chr1.1:15886938-15886957 | MS.gene33599:intron | 10.0% |
| !! | ATAAAATTCTTTACTATATC+GGG | - | chr1.1:15887464-15887483 | None:intergenic | 15.0% |
| !!! | GTAAATTTTGAAATTAAGAA+AGG | - | chr1.1:15887300-15887319 | None:intergenic | 15.0% |
| !! | AAAATAGGATCAATTTGATT+TGG | - | chr1.1:15888004-15888023 | None:intergenic | 20.0% |
| !! | TAAATCTTCATTAACATGTA+GGG | + | chr1.1:15888153-15888172 | MS.gene33599:intron | 20.0% |
| !! | TGAAATTAAGAAAGGAAAAA+AGG | - | chr1.1:15887292-15887311 | None:intergenic | 20.0% |
| !! | TTAAATCTTCATTAACATGT+AGG | + | chr1.1:15888152-15888171 | MS.gene33599:intron | 20.0% |
| !! | TTCCAAAATCCAAAAAAATA+CGG | + | chr1.1:15887974-15887993 | MS.gene33599:CDS | 20.0% |
| !! | TTGGAATAATAATCTTCTTT+GGG | - | chr1.1:15887353-15887372 | None:intergenic | 20.0% |
| !!! | ATCTAGAACATATACAATTT+AGG | + | chr1.1:15887725-15887744 | MS.gene33599:intron | 20.0% |
| !!! | GAATTTTATAGAGAATATCA+AGG | + | chr1.1:15887475-15887494 | MS.gene33599:CDS | 20.0% |
| !!! | TCTAGAACATATACAATTTA+GGG | + | chr1.1:15887726-15887745 | MS.gene33599:intron | 20.0% |
| !!! | TTTGGAATAATAATCTTCTT+TGG | - | chr1.1:15887354-15887373 | None:intergenic | 20.0% |
| ! | AACCATCTACTAGAATAATA+TGG | + | chr1.1:15888297-15888316 | MS.gene33599:CDS | 25.0% |
| ! | AAGATTTCATACCTAAAACA+AGG | + | chr1.1:15887165-15887184 | MS.gene33599:CDS | 25.0% |
| ! | AATTTCAAAATTTACTTGCC+AGG | + | chr1.1:15887305-15887324 | MS.gene33599:intron | 25.0% |
| ! | ACCAATATCAAATGTGTATA+AGG | - | chr1.1:15887378-15887397 | None:intergenic | 25.0% |
| ! | ACCATCTACTAGAATAATAT+GGG | + | chr1.1:15888298-15888317 | MS.gene33599:CDS | 25.0% |
| ! | ATATACCCTAACTTGAAAAT+AGG | - | chr1.1:15888019-15888038 | None:intergenic | 25.0% |
| ! | ATTACTAAAATGCAACTTTC+TGG | + | chr1.1:15887700-15887719 | MS.gene33599:intron | 25.0% |
| ! | CAAGTTAGGGTATATATATT+TGG | + | chr1.1:15888024-15888043 | MS.gene33599:intron | 25.0% |
| ! | CTAGAACATATACAATTTAG+GGG | + | chr1.1:15887727-15887746 | MS.gene33599:intron | 25.0% |
| ! | GTTTGTACCATTTATGTTTA+TGG | - | chr1.1:15888255-15888274 | None:intergenic | 25.0% |
| ! | TAGATAAAGTTAGCAGAAAA+GGG | - | chr1.1:15887511-15887530 | None:intergenic | 25.0% |
| ! | TGGAATAATAATCTTCTTTG+GGG | - | chr1.1:15887352-15887371 | None:intergenic | 25.0% |
| !!! | ATTGATCCTATTTTCAAGTT+AGG | + | chr1.1:15888010-15888029 | MS.gene33599:intron | 25.0% |
| !!! | TTGATCCTATTTTCAAGTTA+GGG | + | chr1.1:15888011-15888030 | MS.gene33599:intron | 25.0% |
| ACCTAAAACAAGGTTCATTA+GGG | + | chr1.1:15887175-15887194 | MS.gene33599:CDS | 30.0% | |
| ACTAGTAATATCATACCTAG+TGG | + | chr1.1:15887098-15887117 | MS.gene33599:CDS | 30.0% | |
| ATCAAATGTGTATAAGGCTT+TGG | - | chr1.1:15887372-15887391 | None:intergenic | 30.0% | |
| ATCAAGATATGGACTTAGAT+AGG | - | chr1.1:15887012-15887031 | None:intergenic | 30.0% | |
| CTAGGTATGATATTACTAGT+AGG | - | chr1.1:15887098-15887117 | None:intergenic | 30.0% | |
| CTATATAGTGTGATGTAGAT+GGG | - | chr1.1:15886891-15886910 | None:intergenic | 30.0% | |
| CTTTATAGCAGATGGAAAAT+TGG | - | chr1.1:15887810-15887829 | None:intergenic | 30.0% | |
| GCCTTATACACATTTGATAT+TGG | + | chr1.1:15887374-15887393 | MS.gene33599:CDS | 30.0% | |
| GGAAAATTGGCCAAAATTAA+AGG | - | chr1.1:15887797-15887816 | None:intergenic | 30.0% | |
| GGGTATATATATTTGGATTG+CGG | + | chr1.1:15888031-15888050 | MS.gene33599:intron | 30.0% | |
| GTAGATAAAGTTAGCAGAAA+AGG | - | chr1.1:15887512-15887531 | None:intergenic | 30.0% | |
| TAACTATCCTTTATAGCAGA+TGG | - | chr1.1:15887818-15887837 | None:intergenic | 30.0% | |
| TACAACTATAACATTAGTGC+TGG | + | chr1.1:15888218-15888237 | MS.gene33599:CDS | 30.0% | |
| TACCTAAAACAAGGTTCATT+AGG | + | chr1.1:15887174-15887193 | MS.gene33599:CDS | 30.0% | |
| TCAAGATATGGACTTAGATA+GGG | - | chr1.1:15887011-15887030 | None:intergenic | 30.0% | |
| TCCCATATTATTCTAGTAGA+TGG | - | chr1.1:15888302-15888321 | None:intergenic | 30.0% | |
| TCTACTAGAATAATATGGGA+TGG | + | chr1.1:15888302-15888321 | MS.gene33599:CDS | 30.0% | |
| TCTGCTATAAAGGATAGTTA+TGG | + | chr1.1:15887818-15887837 | MS.gene33599:CDS | 30.0% | |
| TTTGTGTCCTTAATTAAGCT+CGG | - | chr1.1:15887265-15887284 | None:intergenic | 30.0% | |
| ! | ATTAAAGGTACACATCCAAT+TGG | - | chr1.1:15887782-15887801 | None:intergenic | 30.0% |
| ! | CAATTTTCCATCTGCTATAA+AGG | + | chr1.1:15887808-15887827 | MS.gene33599:CDS | 30.0% |
| ! | TCATTTTGGATACATAACAC+TGG | + | chr1.1:15887755-15887774 | MS.gene33599:CDS | 30.0% |
| !! | TGGATGTGTACCTTTAATTT+TGG | + | chr1.1:15887784-15887803 | MS.gene33599:CDS | 30.0% |
| !!! | CACCGTATTTTTTTGGATTT+TGG | - | chr1.1:15887979-15887998 | None:intergenic | 30.0% |
| AAATGGTACAAACACTGTTG+TGG | + | chr1.1:15888262-15888281 | MS.gene33599:CDS | 35.0% | |
| AATGGTACAAACACTGTTGT+GGG | + | chr1.1:15888263-15888282 | MS.gene33599:CDS | 35.0% | |
| ACATATACAATTTAGGGGCA+AGG | + | chr1.1:15887732-15887751 | MS.gene33599:CDS | 35.0% | |
| AGTCCATATCTTGATTCTCT+TGG | + | chr1.1:15887017-15887036 | MS.gene33599:CDS | 35.0% | |
| ATACATAACACTGGACCAAT+TGG | + | chr1.1:15887764-15887783 | MS.gene33599:CDS | 35.0% | |
| ATTGAATGTACTGAACCTGA+AGG | - | chr1.1:15887142-15887161 | None:intergenic | 35.0% | |
| CCATCTACATCACACTATAT+AGG | + | chr1.1:15886889-15886908 | MS.gene33599:CDS | 35.0% | |
| CCTATATAGTGTGATGTAGA+TGG | - | chr1.1:15886892-15886911 | None:intergenic | 35.0% | |
| GGAGCAACCATAAACATAAA+TGG | + | chr1.1:15888245-15888264 | MS.gene33599:CDS | 35.0% | |
| GTCCATATCTTGATTCTCTT+GGG | + | chr1.1:15887018-15887037 | MS.gene33599:CDS | 35.0% | |
| GTCTTTGATCAAATCTCTAC+TGG | + | chr1.1:15888356-15888375 | MS.gene33599:CDS | 35.0% | |
| TGTGATTCCGAGCTTAATTA+AGG | + | chr1.1:15887255-15887274 | MS.gene33599:intron | 35.0% | |
| TTCAAAATTTACTTGCCAGG+AGG | + | chr1.1:15887308-15887327 | MS.gene33599:intron | 35.0% | |
| TTGAATGTACTGAACCTGAA+GGG | - | chr1.1:15887141-15887160 | None:intergenic | 35.0% | |
| !! | AATGGACTAAACATTCCACT+AGG | - | chr1.1:15887116-15887135 | None:intergenic | 35.0% |
| !! | ACGTTGACTCGCTATAATTA+TGG | + | chr1.1:15888097-15888116 | MS.gene33599:intron | 35.0% |
| !! | GATGTAGATGGGTTTGTTAT+TGG | - | chr1.1:15886880-15886899 | None:intergenic | 35.0% |
| !!! | GATCTTACTGCTGGATTTTT+TGG | + | chr1.1:15887404-15887423 | MS.gene33599:CDS | 35.0% |
| !!! | TCCCTAATGAACCTTGTTTT+AGG | - | chr1.1:15887179-15887198 | None:intergenic | 35.0% |
| !!! | TTTGGCTCACCGTATTTTTT+TGG | - | chr1.1:15887986-15888005 | None:intergenic | 35.0% |
| !!! | TTTTGGAAAAGAGAGTGCTT+TGG | - | chr1.1:15887962-15887981 | None:intergenic | 35.0% |
| AATGTTGCAAATACACCTCC+TGG | - | chr1.1:15887326-15887345 | None:intergenic | 40.0% | |
| ACAAGGTTCATTAGGGATCA+AGG | + | chr1.1:15887182-15887201 | MS.gene33599:CDS | 40.0% | |
| ACACTATATAGGAGCTCACA+TGG | + | chr1.1:15886900-15886919 | MS.gene33599:CDS | 40.0% | |
| ACATATGTGATTGCTGCTAG+TGG | - | chr1.1:15887926-15887945 | None:intergenic | 40.0% | |
| ACATGCCCTATTTAGTGGAA+TGG | - | chr1.1:15888399-15888418 | None:intergenic | 40.0% | |
| ATCCTCCCATTCCACTAAAT+AGG | + | chr1.1:15888390-15888409 | MS.gene33599:CDS | 40.0% | |
| CATGCCCTATTTAGTGGAAT+GGG | - | chr1.1:15888398-15888417 | None:intergenic | 40.0% | |
| CTGTAACATGCCCTATTTAG+TGG | - | chr1.1:15888404-15888423 | None:intergenic | 40.0% | |
| GACCCAAGAGAATCAAGATA+TGG | - | chr1.1:15887023-15887042 | None:intergenic | 40.0% | |
| GGTCAAAATGATCTTACTGC+TGG | + | chr1.1:15887395-15887414 | MS.gene33599:CDS | 40.0% | |
| TACTGAACCTGAAGGGAAAA+TGG | - | chr1.1:15887134-15887153 | None:intergenic | 40.0% | |
| TCCTCCCATTCCACTAAATA+GGG | + | chr1.1:15888391-15888410 | MS.gene33599:CDS | 40.0% | |
| ! | ATTTAGGGGCAAGGTCATTT+TGG | + | chr1.1:15887741-15887760 | MS.gene33599:CDS | 40.0% |
| ! | GTTTAGTCCATTTTCCCTTC+AGG | + | chr1.1:15887124-15887143 | MS.gene33599:CDS | 40.0% |
| !! | TATAACATTAGTGCTGGCTG+TGG | + | chr1.1:15888224-15888243 | MS.gene33599:CDS | 40.0% |
| AGGGTTTGAACTTCCACTAG+TGG | + | chr1.1:15888172-15888191 | MS.gene33599:intron | 45.0% | |
| CTTGGGTCAAACTTCACACA+TGG | + | chr1.1:15887035-15887054 | MS.gene33599:CDS | 45.0% | |
| GGATGGTACTCATTACACAG+AGG | + | chr1.1:15888319-15888338 | MS.gene33599:CDS | 45.0% | |
| GTGCAAACTTTGCAACAGCA+GGG | + | chr1.1:15887057-15887076 | MS.gene33599:CDS | 45.0% | |
| !! | ATATATATATATATATAACA+AGG | - | chr1.1:15887624-15887643 | None:intergenic | 5.0% |
| !! | TATATATATATATATAACAA+GGG | - | chr1.1:15887623-15887642 | None:intergenic | 5.0% |
| ATCCCTGCGAAGATGAGCTA+GGG | - | chr1.1:15887900-15887919 | None:intergenic | 50.0% | |
| GCCCTATTTAGTGGAATGGG+AGG | - | chr1.1:15888395-15888414 | None:intergenic | 50.0% | |
| GGTGCAAACTTTGCAACAGC+AGG | + | chr1.1:15887056-15887075 | MS.gene33599:CDS | 50.0% | |
| TTGCCACAACAAGCCACTAG+TGG | - | chr1.1:15888188-15888207 | None:intergenic | 50.0% | |
| !! | CTAGTGGCTTGTTGTGGCAA+TGG | + | chr1.1:15888188-15888207 | MS.gene33599:CDS | 50.0% |
| !! | CTTCCACTAGTGGCTTGTTG+TGG | + | chr1.1:15888182-15888201 | MS.gene33599:CDS | 50.0% |
| AAGCCCTAGCTCATCTTCGC+AGG | + | chr1.1:15887894-15887913 | MS.gene33599:CDS | 55.0% | |
| AGCCCTAGCTCATCTTCGCA+GGG | + | chr1.1:15887895-15887914 | MS.gene33599:CDS | 55.0% | |
| GATCCCTGCGAAGATGAGCT+AGG | - | chr1.1:15887901-15887920 | None:intergenic | 55.0% | |
| !! | GTGGCTTGTTGTGGCAATGG+AGG | + | chr1.1:15888191-15888210 | MS.gene33599:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 15886870 | 15888430 | 15886870 | ID=MS.gene33599 |
| chr1.1 | mRNA | 15886870 | 15888430 | 15886870 | ID=MS.gene33599.t1;Parent=MS.gene33599 |
| chr1.1 | exon | 15886870 | 15886921 | 15886870 | ID=MS.gene33599.t1.exon1;Parent=MS.gene33599.t1 |
| chr1.1 | CDS | 15886870 | 15886921 | 15886870 | ID=cds.MS.gene33599.t1;Parent=MS.gene33599.t1 |
| chr1.1 | exon | 15886991 | 15887203 | 15886991 | ID=MS.gene33599.t1.exon2;Parent=MS.gene33599.t1 |
| chr1.1 | CDS | 15886991 | 15887203 | 15886991 | ID=cds.MS.gene33599.t1;Parent=MS.gene33599.t1 |
| chr1.1 | exon | 15887327 | 15887496 | 15887327 | ID=MS.gene33599.t1.exon3;Parent=MS.gene33599.t1 |
| chr1.1 | CDS | 15887327 | 15887496 | 15887327 | ID=cds.MS.gene33599.t1;Parent=MS.gene33599.t1 |
| chr1.1 | exon | 15887731 | 15887995 | 15887731 | ID=MS.gene33599.t1.exon4;Parent=MS.gene33599.t1 |
| chr1.1 | CDS | 15887731 | 15887995 | 15887731 | ID=cds.MS.gene33599.t1;Parent=MS.gene33599.t1 |
| chr1.1 | exon | 15888174 | 15888430 | 15888174 | ID=MS.gene33599.t1.exon5;Parent=MS.gene33599.t1 |
| chr1.1 | CDS | 15888174 | 15888430 | 15888174 | ID=cds.MS.gene33599.t1;Parent=MS.gene33599.t1 |
| Gene Sequence |
| Protein sequence |
