AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056354

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056354.t1 MTR_4g066380 89.744 351 17 3 1 351 1 332 0.0 589
MS.gene056354.t1 MTR_4g067010 84.302 344 28 4 1 343 1 319 0.0 568
MS.gene056354.t1 MTR_4g066460 83.721 344 36 4 1 342 1 326 0.0 550
MS.gene056354.t1 MTR_6g047570 66.384 354 90 9 1 344 1 335 5.33e-155 439
MS.gene056354.t1 MTR_0011s0260 63.904 374 90 7 1 344 1 359 1.55e-143 410
MS.gene056354.t1 MTR_0011s0210 63.904 374 90 7 1 344 1 359 3.76e-142 407
MS.gene056354.t1 MTR_0250s0040 58.154 325 70 7 23 343 1 263 2.34e-118 343
MS.gene056354.t1 MTR_0246s0020 55.039 387 122 9 1 344 1 378 4.04e-115 339
MS.gene056354.t1 MTR_0246s0020 52.632 380 126 10 1 337 1 369 6.94e-102 305
MS.gene056354.t1 MTR_4g098035 48.913 368 135 11 1 343 1 340 2.45e-95 287
MS.gene056354.t1 MTR_0246s0050 48.266 346 127 10 22 343 2 319 6.90e-88 267
MS.gene056354.t1 MTR_6g047550 57.480 254 70 6 1 234 1 236 3.43e-82 251
MS.gene056354.t1 MTR_5g014520 43.988 341 145 13 17 341 20 330 5.28e-66 212
MS.gene056354.t1 MTR_5g014560 47.598 229 99 6 121 341 89 304 4.67e-54 180
MS.gene056354.t1 MTR_5g014600 34.659 352 182 11 13 340 7 334 4.45e-45 157
MS.gene056354.t1 MTR_4g097940 41.232 211 115 4 137 343 123 328 3.97e-44 155
MS.gene056354.t1 MTR_4g097920 40.284 211 117 4 137 343 108 313 6.69e-44 154
MS.gene056354.t1 MTR_4g097920 40.284 211 117 4 137 343 123 328 1.05e-43 154
MS.gene056354.t1 MTR_2g010450 41.905 210 111 3 138 343 151 353 1.69e-42 151
MS.gene056354.t1 MTR_4g009540 42.708 192 95 5 163 341 142 331 3.81e-42 149
MS.gene056354.t1 MTR_2g104490 37.193 285 153 10 60 339 43 306 1.28e-41 147
MS.gene056354.t1 MTR_2g104550 41.709 199 111 3 147 340 113 311 3.41e-41 147
MS.gene056354.t1 MTR_4g092700 35.496 262 151 4 94 343 78 333 1.84e-40 145
MS.gene056354.t1 MTR_5g014640 36.090 266 149 5 87 340 67 323 8.48e-40 143
MS.gene056354.t1 MTR_8g009020 40.306 196 103 3 158 341 130 323 1.31e-39 143
MS.gene056354.t1 MTR_4g097950 45.699 186 89 4 168 342 67 251 1.76e-39 140
MS.gene056354.t1 MTR_4g009110 34.959 246 146 4 108 341 107 350 2.77e-39 142
MS.gene056354.t1 MTR_2g104650 44.385 187 95 4 160 338 81 266 2.53e-36 133
MS.gene056354.t1 MTR_2g104490 37.860 243 134 8 82 320 58 287 1.80e-35 131
MS.gene056354.t1 MTR_7g080780 36.986 219 128 4 130 348 114 322 1.38e-34 129
MS.gene056354.t1 MTR_4g009540 42.604 169 86 4 163 320 142 310 1.55e-34 129
MS.gene056354.t1 MTR_7g080780 36.986 219 128 4 130 348 127 335 1.85e-34 129
MS.gene056354.t1 MTR_2g104560 38.660 194 100 6 160 342 41 226 2.90e-34 126
MS.gene056354.t1 MTR_8g069740 41.954 174 92 4 154 319 93 265 9.10e-34 125
MS.gene056354.t1 MTR_8g009010 33.613 238 114 4 100 336 73 267 1.55e-29 115
MS.gene056354.t1 MTR_2g104530 33.990 203 119 4 138 336 78 269 4.32e-29 114
MS.gene056354.t1 MTR_2g104500 33.463 257 133 11 93 341 46 272 1.39e-27 109
MS.gene056354.t1 MTR_2g104590 36.757 185 90 5 160 338 58 221 1.52e-27 108
MS.gene056354.t1 MTR_4g009510 37.059 170 93 5 173 339 45 203 2.57e-25 101
MS.gene056354.t1 MTR_7g451650 36.601 153 76 2 194 339 57 195 2.66e-23 96.3
MS.gene056354.t1 MTR_5g014550 47.619 126 55 3 201 319 54 175 5.84e-23 95.1
MS.gene056354.t1 MTR_4g009420 35.294 170 78 4 178 339 50 195 3.62e-22 93.2
MS.gene056354.t1 MTR_7g050350 35.374 147 74 2 200 339 1 133 3.53e-21 88.6
MS.gene056354.t1 MTR_7g451650 35.374 147 74 2 200 339 1 133 3.53e-21 88.6
MS.gene056354.t1 MTR_8g024790 30.769 169 107 4 143 304 263 428 2.79e-17 83.2
MS.gene056354.t1 MTR_8g067280 31.138 167 91 2 162 304 443 609 6.41e-17 82.4
MS.gene056354.t1 MTR_1g072320 31.250 144 84 2 171 301 470 611 1.27e-16 81.6
MS.gene056354.t1 MTR_5g030430 31.138 167 97 3 156 304 474 640 2.17e-15 77.8
MS.gene056354.t1 MTR_7g451650 33.333 138 71 2 194 324 57 180 5.12e-15 73.2
MS.gene056354.t1 MTR_3g030700 28.191 188 127 2 140 319 165 352 8.00e-15 75.1
MS.gene056354.t1 MTR_8g064700 26.596 188 118 5 142 317 219 398 2.69e-14 73.9
MS.gene056354.t1 MTR_8g024770 29.605 152 73 4 155 277 246 392 4.37e-14 73.6
MS.gene056354.t1 MTR_7g117670 30.189 159 102 2 167 321 394 547 7.28e-14 73.2
MS.gene056354.t1 MTR_3g498695 27.363 201 132 3 157 344 284 483 8.02e-14 72.8
MS.gene056354.t1 MTR_4g009420 31.250 160 70 4 194 345 65 192 8.02e-14 70.1
MS.gene056354.t1 MTR_7g096350 28.804 184 111 4 75 238 239 422 3.32e-13 70.9
MS.gene056354.t1 MTR_3g498695 27.363 201 131 4 157 344 284 482 5.75e-13 70.1
MS.gene056354.t1 MTR_8g027495 45.000 80 36 2 167 238 450 529 1.48e-12 68.9
MS.gene056354.t1 MTR_3g104100 26.452 155 101 2 173 314 197 351 1.43e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056354.t1 AT4G37850 38.491 265 126 8 110 343 70 328 4.80e-40 144
MS.gene056354.t1 AT4G37850 38.491 265 126 8 110 343 70 328 4.80e-40 144
MS.gene056354.t1 AT2G22760 39.362 188 107 3 160 340 108 295 3.93e-38 138
MS.gene056354.t1 AT2G22750 33.333 357 188 14 8 342 4 332 1.16e-33 127
MS.gene056354.t1 AT2G22750 42.051 195 103 4 157 342 111 304 1.27e-33 126
MS.gene056354.t1 AT2G22750 42.051 195 103 4 157 342 135 328 1.41e-33 127
MS.gene056354.t1 AT2G22760 40.120 167 94 2 160 320 108 274 4.27e-33 124
MS.gene056354.t1 AT2G22750 33.333 357 187 15 8 342 4 331 2.01e-32 124
MS.gene056354.t1 AT2G22750 42.051 195 102 5 157 342 111 303 2.28e-32 123
MS.gene056354.t1 AT2G22770 36.702 188 101 1 170 339 131 318 2.98e-32 123
MS.gene056354.t1 AT5G46760 32.161 199 103 7 156 324 396 592 1.95e-20 92.8
MS.gene056354.t1 AT4G17880 32.620 187 95 3 140 304 375 552 2.77e-19 89.4
MS.gene056354.t1 AT1G32640 30.303 198 124 6 155 344 432 623 2.57e-17 83.6
MS.gene056354.t1 AT2G46510 47.297 74 29 1 163 226 377 450 2.34e-14 74.7
MS.gene056354.t1 AT1G01260 29.375 160 91 3 161 317 420 560 2.39e-14 74.7
MS.gene056354.t1 AT1G01260 29.375 160 91 3 161 317 420 560 2.39e-14 74.7
MS.gene056354.t1 AT1G01260 29.375 160 91 3 161 317 420 560 2.39e-14 74.7
MS.gene056354.t1 AT4G16430 39.216 102 58 1 156 253 301 402 4.08e-14 73.6
MS.gene056354.t1 AT4G09820 30.769 130 73 1 160 289 352 464 3.69e-13 70.9
MS.gene056354.t1 AT5G46830 41.667 96 42 2 167 248 335 430 1.26e-12 69.3
MS.gene056354.t1 AT4G00870 34.188 117 65 2 172 279 250 363 3.20e-12 67.8
MS.gene056354.t1 AT5G41315 28.272 191 105 7 171 333 441 627 1.37e-11 66.2
MS.gene056354.t1 AT5G41315 28.272 191 105 7 171 333 446 632 1.48e-11 66.2
MS.gene056354.t1 AT5G41315 28.272 191 105 7 171 333 449 635 1.49e-11 65.9
MS.gene056354.t1 AT1G12860 28.729 181 119 4 173 344 269 448 3.68e-11 64.7
MS.gene056354.t1 AT3G26744 29.091 165 104 3 172 323 308 472 7.33e-11 63.5
MS.gene056354.t1 AT3G26744 29.091 165 104 3 172 323 308 472 7.33e-11 63.5
MS.gene056354.t1 AT3G26744 29.091 165 104 3 172 323 308 472 7.33e-11 63.5
MS.gene056354.t1 AT1G63650 27.219 169 97 4 171 316 405 570 9.62e-11 63.5
MS.gene056354.t1 AT1G63650 27.219 169 97 4 171 316 405 570 9.62e-11 63.5
MS.gene056354.t1 AT1G63650 27.219 169 97 4 171 316 405 570 9.62e-11 63.5

Find 62 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTACTAGGGGTTGAATTT+GGG 0.150044 4.1:-34511301 None:intergenic
GAGTTACTAGGGGTTGAATT+TGG 0.197664 4.1:-34511302 None:intergenic
ATGGCAATATTGAAGTTTAT+TGG 0.239576 4.1:+34515337 MS.gene056354:CDS
CAGCAGCTGGTTAACTGATT+TGG 0.268145 4.1:+34510703 MS.gene056354:CDS
TCTTGTTCCTAACCTTAAAA+AGG 0.274757 4.1:+34511532 MS.gene056354:CDS
ATTGATGATACTTTCATTGC+TGG 0.287035 4.1:-34510680 None:intergenic
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 4.1:+34514858 MS.gene056354:CDS
CATCAGCATCAAGGAAATTC+AGG 0.338727 4.1:-34511058 None:intergenic
GATGGTGATGGAGAAATATT+TGG 0.350142 4.1:-34511236 None:intergenic
CTGCAAGAGCAATGAAGGTT+TGG 0.363766 4.1:-34511508 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4.1:+34511343 MS.gene056354:CDS
GATAGTGTTGAATGTGTTGT+TGG 0.376948 4.1:+34514825 MS.gene056354:CDS
TAGGAAAACAAATGTTAATT+CGG 0.382863 4.1:+34514877 MS.gene056354:CDS
AACAGCAGTGTCTTACCCTT+TGG 0.407087 4.1:+34514975 MS.gene056354:CDS
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 4.1:-34514852 None:intergenic
ATCGCTACATAGGCATGGTT+TGG 0.411442 4.1:-34514781 None:intergenic
TGCAAGAGCAATGAAGGTTT+GGG 0.438568 4.1:-34511507 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4.1:+34511377 MS.gene056354:CDS
CAAACAACAATGTTTAACTC+TGG 0.449913 4.1:+34511130 MS.gene056354:CDS
GGGGCTTCTAGTTAAAATAA+TGG 0.460369 4.1:+34514920 MS.gene056354:CDS
GTTACTAGGGGTTGAATTTG+GGG 0.462134 4.1:-34511300 None:intergenic
AAAGAGGAGTTAGATGGTGA+TGG 0.464747 4.1:-34511248 None:intergenic
AAACAACAATGTTTAACTCT+GGG 0.467228 4.1:+34511131 MS.gene056354:CDS
TTGATGATACTTTCATTGCT+GGG 0.467665 4.1:-34510679 None:intergenic
TGACTTGCTGAGATTATTTG+TGG 0.472239 4.1:-34511162 None:intergenic
GCTGAGATTATTTGTGGAAG+TGG 0.485912 4.1:-34511156 None:intergenic
AAGAGCTGCAAGAGCAATGA+AGG 0.494766 4.1:-34511513 None:intergenic
GAATTTCCTTGATGCTGATG+TGG 0.495795 4.1:+34511061 MS.gene056354:CDS
AACTGAAAAGAGGAGTTAGA+TGG 0.496291 4.1:-34511254 None:intergenic
GCCCCTTGTGCTCCTGACAT+TGG 0.496432 4.1:-34514902 None:intergenic
GTTAATTCGGATCCAATGTC+AGG 0.504253 4.1:+34514890 MS.gene056354:CDS
GGTAACTACCTGAGCAATGA+TGG 0.506977 4.1:-34515018 None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG 0.511731 4.1:+34511440 MS.gene056354:CDS
AATTTCCTTGATGCTGATGT+GGG 0.525240 4.1:+34511062 MS.gene056354:CDS
AAATTACTTCCAATTCATGA+AGG 0.528093 4.1:-34515376 None:intergenic
AATTACTTCCAATTCATGAA+GGG 0.543001 4.1:-34515375 None:intergenic
TTCCTTGATGCTGATGTGGG+AGG 0.543559 4.1:+34511065 MS.gene056354:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 4.1:+34515010 MS.gene056354:CDS
AGAAACCTCAAAAGGGTCGT+TGG 0.545529 4.1:+34511385 MS.gene056354:CDS
TCCTTGATGCTGATGTGGGA+GGG 0.545678 4.1:+34511066 MS.gene056354:CDS
TACTAGGGGTTGAATTTGGG+GGG 0.550250 4.1:-34511298 None:intergenic
TTACTAGGGGTTGAATTTGG+GGG 0.551376 4.1:-34511299 None:intergenic
AAGAATCTTCATCGCTACAT+AGG 0.552826 4.1:-34514791 None:intergenic
AATATTGAAGTTTATTGGTG+AGG 0.565962 4.1:+34515342 MS.gene056354:CDS
ATTACTTCCAATTCATGAAG+GGG 0.568338 4.1:-34515374 None:intergenic
ACCCTCCCACATCAGCATCA+AGG 0.568582 4.1:-34511067 None:intergenic
GATCCAATGTCAGGAGCACA+AGG 0.570337 4.1:+34514899 MS.gene056354:CDS
AAGTATCATCAATCAGCAGC+TGG 0.573007 4.1:+34510690 MS.gene056354:CDS
TGGTATTTGAAACTGAAAAG+AGG 0.585974 4.1:-34511264 None:intergenic
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4.1:+34511378 MS.gene056354:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 4.1:-34514991 None:intergenic
TCCAATGTCAGGAGCACAAG+GGG 0.592712 4.1:+34514901 MS.gene056354:CDS
TCTTCATCGCTACATAGGCA+TGG 0.604952 4.1:-34514786 None:intergenic
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4.1:+34514842 MS.gene056354:CDS
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 4.1:-34514990 None:intergenic
CGAATACAATATATTTGCTG+AGG 0.624364 4.1:+34511028 MS.gene056354:CDS
AACAACAATGTTTAACTCTG+GGG 0.649069 4.1:+34511132 MS.gene056354:CDS
ACTTGTGAAGAACGTACGCA+TGG 0.654553 4.1:+34515318 MS.gene056354:CDS
TCATGGTAGAGATCACATCA+TGG 0.685356 4.1:+34511457 MS.gene056354:CDS
ATCCAATGTCAGGAGCACAA+GGG 0.690136 4.1:+34514900 MS.gene056354:CDS
AATTCATGAAGGGGTAACGT+AGG 0.690316 4.1:-34515365 None:intergenic
TGATCTCTACCATGAGCACG+AGG 0.691122 4.1:-34511449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAATAGGA+AGG + chr4.1:34513980-34513999 MS.gene056354:intron 10.0%
!! AAAAATAATTAAGGAATTAA+TGG + chr4.1:34514006-34514025 MS.gene056354:intron 10.0%
!! AAAAATGATTGTTAATTTAT+TGG + chr4.1:34514047-34514066 MS.gene056354:intron 10.0%
!! AAAAGTAGTAATTAATTTAA+GGG - chr4.1:34513243-34513262 None:intergenic 10.0%
!! AAAATAATTAAGGAATTAAT+GGG + chr4.1:34514007-34514026 MS.gene056354:intron 10.0%
!! AAACAATTAAATAAAATCAA+AGG - chr4.1:34512176-34512195 None:intergenic 10.0%
!! AACAATTAAATAAAATCAAA+GGG - chr4.1:34512175-34512194 None:intergenic 10.0%
!! GGTAAAAAAAAAAAAAAAAT+AGG + chr4.1:34513976-34513995 MS.gene056354:intron 10.0%
!! TATTTGTTTATAAATGTAAT+CGG - chr4.1:34512978-34512997 None:intergenic 10.0%
!!! AATATAAGTGAATATTTTTT+TGG - chr4.1:34513378-34513397 None:intergenic 10.0%
!!! CGATTATTAATTAATTATTT+TGG + chr4.1:34510745-34510764 MS.gene056354:intron 10.0%
!! AAAGTATATGATCTATATAT+AGG + chr4.1:34513025-34513044 MS.gene056354:intron 15.0%
!! AATATTAAAAGTAAGTAAGT+TGG - chr4.1:34513273-34513292 None:intergenic 15.0%
!! ATCTAAAAAATTACTTCATT+CGG + chr4.1:34513072-34513091 MS.gene056354:intron 15.0%
!! ATTTGTTTATAAATGTAATC+GGG - chr4.1:34512977-34512996 None:intergenic 15.0%
!! CAAAAGTAGTAATTAATTTA+AGG - chr4.1:34513244-34513263 None:intergenic 15.0%
!! CACTTATATTTCTTATAAAA+AGG + chr4.1:34513388-34513407 MS.gene056354:intron 15.0%
!! CACTTATATTTCTTATAAAA+AGG - chr4.1:34513407-34513388 None:intergenic 15.0%
!! TATAATAATAGTAATAGTGA+TGG - chr4.1:34515096-34515115 None:intergenic 15.0%
!!! AAATTGTAGAGTATTTTATT+TGG - chr4.1:34512808-34512827 None:intergenic 15.0%
!!! AATTGTAGAGTATTTTATTT+GGG - chr4.1:34512807-34512826 None:intergenic 15.0%
!!! AATTTTTTTTTTTTGACAAG+AGG - chr4.1:34511782-34511801 None:intergenic 15.0%
!!! ATTTTATGATCTCTAATAAT+TGG - chr4.1:34514249-34514268 None:intergenic 15.0%
!!! TATTTTGACCAATATATAAA+GGG - chr4.1:34511812-34511831 None:intergenic 15.0%
!!! TCAATAAAATCACATTTTTA+AGG - chr4.1:34513588-34513607 None:intergenic 15.0%
!!! TCTATGTTTATTCTTATTTA+AGG - chr4.1:34510889-34510908 None:intergenic 15.0%
!!! TTATTTTGACCATATATTAA+CGG - chr4.1:34513647-34513666 None:intergenic 15.0%
!! AAAATTGTGAATTGACATAT+GGG - chr4.1:34511658-34511677 None:intergenic 20.0%
!! AAATGGAAAATGTTAACTTA+AGG + chr4.1:34512340-34512359 MS.gene056354:intron 20.0%
!! AAATTCTTGATAAAAAGCTT+CGG + chr4.1:34512288-34512307 MS.gene056354:intron 20.0%
!! AACAATTAGAATTATCATGA+GGG + chr4.1:34513518-34513537 MS.gene056354:intron 20.0%
!! AACATATTAATTCTCTTACT+TGG - chr4.1:34514139-34514158 None:intergenic 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr4.1:34512589-34512608 None:intergenic 20.0%
!! AATGGAAAATGTTAACTTAA+GGG + chr4.1:34512341-34512360 MS.gene056354:intron 20.0%
!! AATGTTTAATGGCAATTTAA+AGG - chr4.1:34515047-34515066 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr4.1:34512591-34512610 None:intergenic 20.0%
!! ACATATTAATTCTCTTACTT+GGG - chr4.1:34514138-34514157 None:intergenic 20.0%
!! ACATTCTTATCTTTCTATAA+AGG + chr4.1:34512085-34512104 MS.gene056354:intron 20.0%
!! AGTAAGAGAATTAATATGTT+TGG + chr4.1:34514139-34514158 MS.gene056354:intron 20.0%
!! AGTGGTAAAAAAATGTTTAA+TGG - chr4.1:34515058-34515077 None:intergenic 20.0%
!! ATTCAATTAACCTAAAAAGT+TGG - chr4.1:34513001-34513020 None:intergenic 20.0%
!! ATTCTCTGTCATAATAAATA+AGG + chr4.1:34513290-34513309 MS.gene056354:intron 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr4.1:34512590-34512609 None:intergenic 20.0%
!! GGACAAAAATAAAATCAAAT+GGG - chr4.1:34512507-34512526 None:intergenic 20.0%
!! TAAAATTGTGAATTGACATA+TGG - chr4.1:34511659-34511678 None:intergenic 20.0%
!! TAACATTTCCCTTTATATAT+TGG + chr4.1:34511801-34511820 MS.gene056354:intron 20.0%
!! TAGGAAAACAAATGTTAATT+CGG + chr4.1:34514877-34514896 MS.gene056354:CDS 20.0%
!! TGCTGTTCTATAAAATAAAA+TGG + chr4.1:34512323-34512342 MS.gene056354:intron 20.0%
!! TTAGAGATAAAGATAAATCT+TGG + chr4.1:34514595-34514614 MS.gene056354:intron 20.0%
!! TTCTCTGTCATAATAAATAA+GGG + chr4.1:34513291-34513310 MS.gene056354:intron 20.0%
!! TTTAATACACATACTAACAA+AGG + chr4.1:34512632-34512651 MS.gene056354:intron 20.0%
!! TTTGTTTATAAATGTAATCG+GGG - chr4.1:34512976-34512995 None:intergenic 20.0%
!!! AATTAATTTAAGGGTATTCA+CGG - chr4.1:34513234-34513253 None:intergenic 20.0%
!!! ATTTTTTTGGTCCTTTTTAT+AGG - chr4.1:34513365-34513384 None:intergenic 20.0%
!!! CACTTTAGTTCAAAATAAAT+AGG + chr4.1:34513550-34513569 MS.gene056354:intron 20.0%
!!! CTATTTTGACCAATATATAA+AGG - chr4.1:34511813-34511832 None:intergenic 20.0%
!!! CTTGAATTTTTTTTTTTTGC+AGG + chr4.1:34510998-34511017 MS.gene056354:intron 20.0%
!!! GTAGTTTTTATAATAATGAC+CGG - chr4.1:34511854-34511873 None:intergenic 20.0%
!!! GTTTATTCTTATTTAAGGTT+AGG - chr4.1:34510884-34510903 None:intergenic 20.0%
!!! TAAACAAATACCAACTTTTT+AGG + chr4.1:34512988-34513007 MS.gene056354:intron 20.0%
!!! TTAACTTTTCCGTTAATATA+TGG + chr4.1:34513635-34513654 MS.gene056354:intron 20.0%
!!! TTAAGTATAGTACCTTTTTA+AGG - chr4.1:34511547-34511566 None:intergenic 20.0%
!!! TTGATTTTGTTTATTTGCAA+CGG + chr4.1:34513604-34513623 MS.gene056354:intron 20.0%
!!! TTTTCTTCTTCTTTTGATTT+TGG + chr4.1:34515203-34515222 MS.gene056354:intron 20.0%
!!! TTTTTTTTTTTTGCAGGAAA+TGG + chr4.1:34511004-34511023 MS.gene056354:intron 20.0%
! AAACAACAATGTTTAACTCT+GGG + chr4.1:34511131-34511150 MS.gene056354:CDS 25.0%
! AAAGTATACTACTACTTTCA+AGG - chr4.1:34512853-34512872 None:intergenic 25.0%
! AAGAAATGTGAAAAATGCAA+AGG + chr4.1:34512714-34512733 MS.gene056354:intron 25.0%
! AATATATTATACTCCCTCTT+CGG + chr4.1:34513142-34513161 MS.gene056354:intron 25.0%
! AATATTGAAGTTTATTGGTG+AGG + chr4.1:34515342-34515361 MS.gene056354:CDS 25.0%
! AATTCTTGATAAAAAGCTTC+GGG + chr4.1:34512289-34512308 MS.gene056354:intron 25.0%
! AGAAATGTGAAAAATGCAAA+GGG + chr4.1:34512715-34512734 MS.gene056354:intron 25.0%
! AGTTATATAAATAGTGCACA+TGG + chr4.1:34513666-34513685 MS.gene056354:intron 25.0%
! ATGATTCAATCACAAATGTA+AGG - chr4.1:34514109-34514128 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG - chr4.1:34512543-34512562 None:intergenic 25.0%
! ATGGCAATATTGAAGTTTAT+TGG + chr4.1:34515337-34515356 MS.gene056354:CDS 25.0%
! CAAAAAAATGAAGCCTAATA+CGG + chr4.1:34514441-34514460 MS.gene056354:intron 25.0%
! CAAAAATAAAATCAAATGGG+TGG - chr4.1:34512504-34512523 None:intergenic 25.0%
! CAACAATTAGAATTATCATG+AGG + chr4.1:34513517-34513536 MS.gene056354:intron 25.0%
! CTCATGATAATTCTAATTGT+TGG - chr4.1:34513519-34513538 None:intergenic 25.0%
! GGAAGGAGAAAAAATAATTA+AGG + chr4.1:34513997-34514016 MS.gene056354:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG - chr4.1:34512508-34512527 None:intergenic 25.0%
! TGATTCAATCACAAATGTAA+GGG - chr4.1:34514108-34514127 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG - chr4.1:34512542-34512561 None:intergenic 25.0%
! TTAATACAGCAACAAATTGT+AGG + chr4.1:34513487-34513506 MS.gene056354:intron 25.0%
! TTAATGGCAATTTAAAGGAT+GGG - chr4.1:34515042-34515061 None:intergenic 25.0%
! TTTAATGGCAATTTAAAGGA+TGG - chr4.1:34515043-34515062 None:intergenic 25.0%
! TTTGGTAAGAAAATCACATA+TGG + chr4.1:34510721-34510740 MS.gene056354:intron 25.0%
!! AATATTTTATAGTTGGGTGA+AGG + chr4.1:34515274-34515293 MS.gene056354:intron 25.0%
!! ACTGCTACTTCAAAAAAATA+TGG + chr4.1:34512201-34512220 MS.gene056354:intron 25.0%
!! ATATTTTATAGTTGGGTGAA+GGG + chr4.1:34515275-34515294 MS.gene056354:intron 25.0%
!! CTGCTACTTCAAAAAAATAT+GGG + chr4.1:34512202-34512221 MS.gene056354:intron 25.0%
!! GTGATTCATATTTTCCAATT+CGG - chr4.1:34511360-34511379 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr4.1:34512579-34512598 None:intergenic 25.0%
!! TGTTTTCTACAATATTTGCT+TGG + chr4.1:34515172-34515191 MS.gene056354:intron 25.0%
!!! AACTAAGTAGTTGATAATTG+AGG - chr4.1:34511603-34511622 None:intergenic 25.0%
!!! AATCACATTTTTAAGGAATG+TGG - chr4.1:34513581-34513600 None:intergenic 25.0%
!!! AGCAAAAAAACGTACTTTTT+AGG - chr4.1:34511962-34511981 None:intergenic 25.0%
!!! GTTTTAATGAATACTTACTC+TGG - chr4.1:34513448-34513467 None:intergenic 25.0%
!!! TAATTGAGGATTTTAAGAGT+TGG - chr4.1:34511589-34511608 None:intergenic 25.0%
!!! TATAGTACCTTTTTAAGGTT+AGG - chr4.1:34511542-34511561 None:intergenic 25.0%
!!! TTTTACCACTTTTAAACTCT+TGG + chr4.1:34515068-34515087 MS.gene056354:intron 25.0%
AAATGTGAAAAATGCAAAGG+GGG + chr4.1:34512717-34512736 MS.gene056354:intron 30.0%
AACAACAATGTTTAACTCTG+GGG + chr4.1:34511132-34511151 MS.gene056354:CDS 30.0%
AAGCAAAAAATACTCCTCTT+CGG - chr4.1:34513415-34513434 None:intergenic 30.0%
AGATATAAGGGACAATTTCA+TGG - chr4.1:34515240-34515259 None:intergenic 30.0%
ATAAAACAATGCTACATAGC+AGG - chr4.1:34514526-34514545 None:intergenic 30.0%
CAAAAACCTCAAAAAGCAAA+AGG + chr4.1:34511426-34511445 MS.gene056354:CDS 30.0%
CAAACAACAATGTTTAACTC+TGG + chr4.1:34511130-34511149 MS.gene056354:CDS 30.0%
CATACTAACAAAGGACAATT+TGG + chr4.1:34512641-34512660 MS.gene056354:intron 30.0%
CATCTAGTAATTTGAAAAGG+GGG - chr4.1:34512540-34512559 None:intergenic 30.0%
CTTCAAACACACTTGAAAAT+TGG + chr4.1:34513330-34513349 MS.gene056354:intron 30.0%
CTTTCTATAAAGGAAAATGC+TGG + chr4.1:34512095-34512114 MS.gene056354:intron 30.0%
CTTTGACATGTATTTATGAG+CGG + chr4.1:34513694-34513713 MS.gene056354:intron 30.0%
GAAAGAGCTTAAAAATCGTT+TGG + chr4.1:34514713-34514732 MS.gene056354:CDS 30.0%
GAAATGTGAAAAATGCAAAG+GGG + chr4.1:34512716-34512735 MS.gene056354:intron 30.0%
GACATAAATCATTAAGACCA+AGG + chr4.1:34513118-34513137 MS.gene056354:intron 30.0%
GATTACATAGATACTTCTTC+CGG + chr4.1:34511832-34511851 MS.gene056354:intron 30.0%
GCATCTAGTAATTTGAAAAG+GGG - chr4.1:34512541-34512560 None:intergenic 30.0%
GCTGTATTAATTACTACAAG+TGG - chr4.1:34513477-34513496 None:intergenic 30.0%
GGTCAATGTTACCTATAAAA+AGG + chr4.1:34513351-34513370 MS.gene056354:intron 30.0%
GGTTTAGAAAACAAATACTC+CGG + chr4.1:34514068-34514087 MS.gene056354:intron 30.0%
TAAAACAATGCTACATAGCA+GGG - chr4.1:34514525-34514544 None:intergenic 30.0%
TATGAAATGAGTGATGTATG+TGG - chr4.1:34511937-34511956 None:intergenic 30.0%
TCAAGATTTGTCTCAACATT+TGG + chr4.1:34510948-34510967 MS.gene056354:intron 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr4.1:34511532-34511551 MS.gene056354:CDS 30.0%
TGAGACAAATCTTGAAGATT+TGG - chr4.1:34510943-34510962 None:intergenic 30.0%
! ACGGAAGATTTTAAATGTAG+AGG - chr4.1:34513215-34513234 None:intergenic 30.0%
! AGCGGATAAAGTACTAATAT+AGG + chr4.1:34513712-34513731 MS.gene056354:intron 30.0%
! ATTGATGATACTTTCATTGC+TGG - chr4.1:34510683-34510702 None:intergenic 30.0%
! CGAATACAATATATTTGCTG+AGG + chr4.1:34511028-34511047 MS.gene056354:CDS 30.0%
! GATATTTAGTTCCAGTTGAT+AGG - chr4.1:34512911-34512930 None:intergenic 30.0%
! GGGAGTATAATATATTTCCT+TGG - chr4.1:34513138-34513157 None:intergenic 30.0%
! TGGTATTTGAAACTGAAAAG+AGG - chr4.1:34511267-34511286 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG - chr4.1:34511356-34511375 None:intergenic 30.0%
! TTGATGATACTTTCATTGCT+GGG - chr4.1:34510682-34510701 None:intergenic 30.0%
!! AAGGGTTTTGATATATACTC+CGG - chr4.1:34514090-34514109 None:intergenic 30.0%
!! ATCCTTAACTTGTATCCTTA+GGG + chr4.1:34512766-34512785 MS.gene056354:intron 30.0%
!! ATTTTGTTTATTTGCAACGG+AGG + chr4.1:34513607-34513626 MS.gene056354:intron 30.0%
!! CTTCTTTTAAAGATGAGTAG+TGG + chr4.1:34513924-34513943 MS.gene056354:intron 30.0%
!! TTTTGTTTATTTGCAACGGA+GGG + chr4.1:34513608-34513627 MS.gene056354:intron 30.0%
!!! AATTTTTTAGGCTCCGTATT+AGG - chr4.1:34514457-34514476 None:intergenic 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG - chr4.1:34511315-34511334 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG - chr4.1:34511316-34511335 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG - chr4.1:34511317-34511336 None:intergenic 30.0%
AACTGAAAAGAGGAGTTAGA+TGG - chr4.1:34511257-34511276 None:intergenic 35.0%
AAGAATCTTCATCGCTACAT+AGG - chr4.1:34514794-34514813 None:intergenic 35.0%
AATGTGAAAAATGCAAAGGG+GGG + chr4.1:34512718-34512737 MS.gene056354:intron 35.0%
AATTTCCTTGATGCTGATGT+GGG + chr4.1:34511062-34511081 MS.gene056354:CDS 35.0%
ACTCAACAGAAACCTCAAAA+GGG + chr4.1:34511378-34511397 MS.gene056354:CDS 35.0%
AGAGAAAGTAGTAGTGTACA+TGG + chr4.1:34511995-34512014 MS.gene056354:intron 35.0%
AGTGGTATGTAATTCGATGT+CGG - chr4.1:34514366-34514385 None:intergenic 35.0%
AGTTACTAGGGGTTGAATTT+GGG - chr4.1:34511304-34511323 None:intergenic 35.0%
ATGTACACTACTACTTTCTC+TGG - chr4.1:34511996-34512015 None:intergenic 35.0%
CAAATGGGTGGTTACATTAA+GGG - chr4.1:34512492-34512511 None:intergenic 35.0%
CATCGAAGAAATGATGTATG+TGG + chr4.1:34511884-34511903 MS.gene056354:intron 35.0%
CTTATAAAAAGGACCGAAGA+GGG - chr4.1:34513418-34513399 None:intergenic 35.0%
GTCGTTGGAAAAAGAAAACA+TGG + chr4.1:34511400-34511419 MS.gene056354:CDS 35.0%
GTGAAATTTCCAGAATGTGT+TGG + chr4.1:34512138-34512157 MS.gene056354:intron 35.0%
TACCCTAAGGATACAAGTTA+AGG - chr4.1:34512771-34512790 None:intergenic 35.0%
TCAAATGGGTGGTTACATTA+AGG - chr4.1:34512493-34512512 None:intergenic 35.0%
TCTTATAAAAAGGACCGAAG+AGG + chr4.1:34513398-34513417 MS.gene056354:intron 35.0%
TCTTATAAAAAGGACCGAAG+AGG - chr4.1:34513417-34513398 None:intergenic 35.0%
TGAAAAGGGGGTTACATTTA+GGG - chr4.1:34512528-34512547 None:intergenic 35.0%
TGGAACCAAGAGTTTAAAAG+TGG - chr4.1:34515076-34515095 None:intergenic 35.0%
TTGAAAAGGGGGTTACATTT+AGG - chr4.1:34512529-34512548 None:intergenic 35.0%
! GATAGTGTTGAATGTGTTGT+TGG + chr4.1:34514825-34514844 MS.gene056354:CDS 35.0%
! GGGGCTTCTAGTTAAAATAA+TGG + chr4.1:34514920-34514939 MS.gene056354:CDS 35.0%
! TAATGCTAACTTGTACCCTA+AGG - chr4.1:34512784-34512803 None:intergenic 35.0%
!! GATCCTTAACTTGTATCCTT+AGG + chr4.1:34512765-34512784 MS.gene056354:intron 35.0%
!! GATGGTGATGGAGAAATATT+TGG - chr4.1:34511239-34511258 None:intergenic 35.0%
!! TGACTTGCTGAGATTATTTG+TGG - chr4.1:34511165-34511184 None:intergenic 35.0%
!! TGATTGGTCTAACAAAGTCT+CGG + chr4.1:34512262-34512281 MS.gene056354:intron 35.0%
!!! TTTAGGCCCTCGAATTTTTT+AGG - chr4.1:34514469-34514488 None:intergenic 35.0%
AAAGAGGAGTTAGATGGTGA+TGG - chr4.1:34511251-34511270 None:intergenic 40.0%
AAGTATCATCAATCAGCAGC+TGG + chr4.1:34510690-34510709 MS.gene056354:CDS 40.0%
ACGGAGCCTAAAAAATTCGA+GGG + chr4.1:34514460-34514479 MS.gene056354:intron 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr4.1:34514855-34514874 None:intergenic 40.0%
ACTTCAGAATATCCGTCACA+AGG + chr4.1:34510850-34510869 MS.gene056354:intron 40.0%
AGAATGTTGCCAACACATTC+TGG - chr4.1:34512150-34512169 None:intergenic 40.0%
AGACCAATCACAATTCATGC+TGG - chr4.1:34512252-34512271 None:intergenic 40.0%
AGCGCAAGGAGTCATAATAT+AGG + chr4.1:34512041-34512060 MS.gene056354:intron 40.0%
CACTCAACAGAAACCTCAAA+AGG + chr4.1:34511377-34511396 MS.gene056354:CDS 40.0%
CATCAGCATCAAGGAAATTC+AGG - chr4.1:34511061-34511080 None:intergenic 40.0%
CTTCAGAATATCCGTCACAA+GGG + chr4.1:34510851-34510870 MS.gene056354:intron 40.0%
GAATTTCCTTGATGCTGATG+TGG + chr4.1:34511061-34511080 MS.gene056354:CDS 40.0%
GACATGTATTTATGAGCGCA+AGG + chr4.1:34512027-34512046 MS.gene056354:intron 40.0%
GAGTTACTAGGGGTTGAATT+TGG - chr4.1:34511305-34511324 None:intergenic 40.0%
GAGTTTATGAACCCGAAACA+CGG + chr4.1:34512882-34512901 MS.gene056354:intron 40.0%
GCTGAGATTATTTGTGGAAG+TGG - chr4.1:34511159-34511178 None:intergenic 40.0%
GTTAATTCGGATCCAATGTC+AGG + chr4.1:34514890-34514909 MS.gene056354:CDS 40.0%
GTTACTAGGGGTTGAATTTG+GGG - chr4.1:34511303-34511322 None:intergenic 40.0%
TACGGAGCCTAAAAAATTCG+AGG + chr4.1:34514459-34514478 MS.gene056354:intron 40.0%
TCATGGTAGAGATCACATCA+TGG + chr4.1:34511457-34511476 MS.gene056354:CDS 40.0%
TCGAGTGTAGAATCTCCAAA+GGG - chr4.1:34514993-34515012 None:intergenic 40.0%
TGCAAGAGCAATGAAGGTTT+GGG - chr4.1:34511510-34511529 None:intergenic 40.0%
TTACTAGGGGTTGAATTTGG+GGG - chr4.1:34511302-34511321 None:intergenic 40.0%
! CACATTCTGGAAATTTCACG+AGG - chr4.1:34512137-34512156 None:intergenic 40.0%
! TTTTTCCAACGACCCTTTTG+AGG - chr4.1:34511393-34511412 None:intergenic 40.0%
!! GATTGGTCTAACAAAGTCTC+GGG + chr4.1:34512263-34512282 MS.gene056354:intron 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG + chr4.1:34514842-34514861 MS.gene056354:CDS 40.0%
!! TTGTGACGGATATTCTGAAG+TGG - chr4.1:34510851-34510870 None:intergenic 40.0%
AACAGCAGTGTCTTACCCTT+TGG + chr4.1:34514975-34514994 MS.gene056354:CDS 45.0%
AAGAGCTGCAAGAGCAATGA+AGG - chr4.1:34511516-34511535 None:intergenic 45.0%
AATCACAATTCATGCTGGCC+CGG - chr4.1:34512247-34512266 None:intergenic 45.0%
ACTTGTGAAGAACGTACGCA+TGG + chr4.1:34515318-34515337 MS.gene056354:CDS 45.0%
AGAAACCTCAAAAGGGTCGT+TGG + chr4.1:34511385-34511404 MS.gene056354:CDS 45.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr4.1:34511343-34511362 MS.gene056354:CDS 45.0%
ATCGCTACATAGGCATGGTT+TGG - chr4.1:34514784-34514803 None:intergenic 45.0%
ATGTTCACTCGAAGCTCAAG+TGG - chr4.1:34514384-34514403 None:intergenic 45.0%
CAGCAGCTGGTTAACTGATT+TGG + chr4.1:34510703-34510722 MS.gene056354:CDS 45.0%
CGACATTACCATCATTGCTC+AGG + chr4.1:34515010-34515029 MS.gene056354:CDS 45.0%
CTGCAAGAGCAATGAAGGTT+TGG - chr4.1:34511511-34511530 None:intergenic 45.0%
GCAAAGGGGGGTTACATTAA+GGG + chr4.1:34512730-34512749 MS.gene056354:intron 45.0%
GGTAACTACCTGAGCAATGA+TGG - chr4.1:34515021-34515040 None:intergenic 45.0%
GTCGAGTGTAGAATCTCCAA+AGG - chr4.1:34514994-34515013 None:intergenic 45.0%
TACTAGGGGTTGAATTTGGG+GGG - chr4.1:34511301-34511320 None:intergenic 45.0%
TAGGCTTATGTCCCTTGTGA+CGG - chr4.1:34510865-34510884 None:intergenic 45.0%
TCTTCATCGCTACATAGGCA+TGG - chr4.1:34514789-34514808 None:intergenic 45.0%
TGCAAAGGGGGGTTACATTA+AGG + chr4.1:34512729-34512748 MS.gene056354:intron 45.0%
TGGGTGGTTACATTAAGGGA+CGG - chr4.1:34512488-34512507 None:intergenic 45.0%
TGGTTACATTAAGGGACGGA+GGG - chr4.1:34512484-34512503 None:intergenic 45.0%
TTTATGAACCCGAAACACGG+TGG + chr4.1:34512885-34512904 MS.gene056354:intron 45.0%
TTTGGGGGGTTGTCATAAGA+TGG - chr4.1:34511287-34511306 None:intergenic 45.0%
! ATCCAATGTCAGGAGCACAA+GGG + chr4.1:34514900-34514919 MS.gene056354:CDS 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG + chr4.1:34514858-34514877 MS.gene056354:CDS 45.0%
!!! AACCACGATGCCGTTTTTTC+CGG + chr4.1:34512225-34512244 MS.gene056354:intron 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr4.1:34511435-34511454 None:intergenic 45.0%
!! ATAAATAATATTAGATATAA+GGG - chr4.1:34515252-34515271 None:intergenic 5.0%
!! ATATAATAAAAAAATGAAAA+AGG + chr4.1:34513955-34513974 MS.gene056354:intron 5.0%
!! TATAAATAATATTAGATATA+AGG - chr4.1:34515253-34515272 None:intergenic 5.0%
!!! TAAAAGTAAAATTATTTTTT+TGG + chr4.1:34512379-34512398 MS.gene056354:intron 5.0%
!!! TTATATAATATTTTATAGTT+GGG + chr4.1:34515268-34515287 MS.gene056354:intron 5.0%
!!! TTATATTTTAAAAATATTGA+AGG + chr4.1:34511724-34511743 MS.gene056354:intron 5.0%
!!! TTTATATAATATTTTATAGT+TGG + chr4.1:34515267-34515286 MS.gene056354:intron 5.0%
AAACACGGTGGCCTATCAAC+TGG + chr4.1:34512897-34512916 MS.gene056354:intron 50.0%
AAATGCTGGATAACGCGAGG+TGG + chr4.1:34512109-34512128 MS.gene056354:intron 50.0%
ACAATGCTACATAGCAGGGC+TGG - chr4.1:34514521-34514540 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG + chr4.1:34512734-34512753 MS.gene056354:intron 50.0%
GGAAAATGCTGGATAACGCG+AGG + chr4.1:34512106-34512125 MS.gene056354:intron 50.0%
GGGCCAGCATGAATTGTGAT+TGG + chr4.1:34512246-34512265 MS.gene056354:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG + chr4.1:34512738-34512757 MS.gene056354:intron 50.0%
GTGGTTACATTAAGGGACGG+AGG - chr4.1:34512485-34512504 None:intergenic 50.0%
TCATGCTGGCCCGGAAAAAA+CGG - chr4.1:34512238-34512257 None:intergenic 50.0%
TCCTTGATGCTGATGTGGGA+GGG + chr4.1:34511066-34511085 MS.gene056354:CDS 50.0%
TGATCTCTACCATGAGCACG+AGG - chr4.1:34511452-34511471 None:intergenic 50.0%
TTCCTTGATGCTGATGTGGG+AGG + chr4.1:34511065-34511084 MS.gene056354:CDS 50.0%
TTGATAGGCCACCGTGTTTC+GGG - chr4.1:34512896-34512915 None:intergenic 50.0%
! AGGGACGGAGGGAGTATAAA+AGG - chr4.1:34512473-34512492 None:intergenic 50.0%
! GATCCAATGTCAGGAGCACA+AGG + chr4.1:34514899-34514918 MS.gene056354:CDS 50.0%
! GTTGATAGGCCACCGTGTTT+CGG - chr4.1:34512897-34512916 None:intergenic 50.0%
! TCCAATGTCAGGAGCACAAG+GGG + chr4.1:34514901-34514920 MS.gene056354:CDS 50.0%
!! ACATAGCAGGGCTGGTCTAA+GGG - chr4.1:34514513-34514532 None:intergenic 50.0%
!! TACATAGCAGGGCTGGTCTA+AGG - chr4.1:34514514-34514533 None:intergenic 50.0%
!!! ACCACGATGCCGTTTTTTCC+GGG + chr4.1:34512226-34512245 MS.gene056354:intron 50.0%
ACCCTCCCACATCAGCATCA+AGG - chr4.1:34511070-34511089 None:intergenic 55.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr4.1:34511440-34511459 MS.gene056354:CDS 55.0%
GCCACTAAAGCAGGGGCTTT+AGG - chr4.1:34514486-34514505 None:intergenic 55.0%
GCCTAAAGCCCCTGCTTTAG+TGG + chr4.1:34514482-34514501 MS.gene056354:intron 55.0%
GGGGTTACATTAAGGGACGG+AGG + chr4.1:34512737-34512756 MS.gene056354:intron 55.0%
!! ATAGCAGGGCTGGTCTAAGG+GGG - chr4.1:34514511-34514530 None:intergenic 55.0%
!! CATAGCAGGGCTGGTCTAAG+GGG - chr4.1:34514512-34514531 None:intergenic 55.0%
AAGGGGGCTGCCACTAAAGC+AGG - chr4.1:34514495-34514514 None:intergenic 60.0%
AGGGGGCTGCCACTAAAGCA+GGG - chr4.1:34514494-34514513 None:intergenic 60.0%
GCCCCTTGTGCTCCTGACAT+TGG - chr4.1:34514905-34514924 None:intergenic 60.0%
GCCCGGAAAAAACGGCATCG+TGG - chr4.1:34512230-34512249 None:intergenic 60.0%
GGGGGCTGCCACTAAAGCAG+GGG - chr4.1:34514493-34514512 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 34510662 34515384 34510662 ID=MS.gene056354
chr4.1 mRNA 34510662 34515384 34510662 ID=MS.gene056354.t1;Parent=MS.gene056354
chr4.1 exon 34510662 34510724 34510662 ID=MS.gene056354.t1.exon1;Parent=MS.gene056354.t1
chr4.1 CDS 34510662 34510724 34510662 ID=cds.MS.gene056354.t1;Parent=MS.gene056354.t1
chr4.1 exon 34511020 34511553 34511020 ID=MS.gene056354.t1.exon2;Parent=MS.gene056354.t1
chr4.1 CDS 34511020 34511553 34511020 ID=cds.MS.gene056354.t1;Parent=MS.gene056354.t1
chr4.1 exon 34514672 34515031 34514672 ID=MS.gene056354.t1.exon3;Parent=MS.gene056354.t1
chr4.1 CDS 34514672 34515031 34514672 ID=cds.MS.gene056354.t1;Parent=MS.gene056354.t1
chr4.1 exon 34515286 34515384 34515286 ID=MS.gene056354.t1.exon4;Parent=MS.gene056354.t1
chr4.1 CDS 34515286 34515384 34515286 ID=cds.MS.gene056354.t1;Parent=MS.gene056354.t1
Gene Sequence

>MS.gene056354

ATGGAGGAAATCAACAACCCAGCAATGAAAGTATCATCAATCAGCAGCTGGTTAACTGATTTGGTAAGAAAATCACATATGGTCGATTATTAATTAATTATTTTGGCTTTAATTAAGTTAAATGTAAGCTAAGTGAAGTTTGAGTTTGAGATCTAACGTAATTTGTGAGTTTGAGATCTTTGTCTTCCACTTCAGAATATCCGTCACAAGGGACATAAGCCTAACCTTAAATAAGAATAAACATAGATCTGAAATATAATTTCAAATATATTTGTAGACCAAATCTTCAAGATTTGTCTCAACATTTGGAATAACATAGTCATTAATTAATTAACACTTGAATTTTTTTTTTTTGCAGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTGAATTTCCTTGATGCTGATGTGGGAGGGTTTCTTTCACAAGACATGTCTAATGTATTTCAAGAACAAAACAAACAACAATGTTTAACTCTGGGGTCCACTTCCACAAATAATCTCAGCAAGTCATTCATTCATGAAACAATTGATAATAATGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTATGACAACCCCCCAAATTCAACCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCGTTGGAAAAAGAAAACATGGAAACAAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAGAGATCACATCATGGCTGAGAGAAATCGAAGAGAGAAACTCACCCAAACCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGGTACTATACTTAATTTTCACTTACTCTATTAGCCAACTCTTAAAATCCTCAATTATCAACTACTTAGTTGATAAATACATATTGCGTTGTAGTTGATCATTCCCATATGTCAATTCACAATTTTAATAATTAATATCTTTAATTATTTATCATAACAAATTATAAAAAGTTTATATTTTAAAAATATTGAAGGTGATAAATCGAGCAACTTATATATTAAGATTTCCTCTTGTCAAAAAAAAAAAATTAACATTTCCCTTTATATATTGGTCAAAATAGATTACATAGATACTTCTTCCGGTCATTATTATAAAAACTACTTTATAGATTCATCGAAGAAATGATGTATGTGGTCTATATTAAAGTGTAGAATATGTAGACCACATACATCACTCATTTCATATACCTAAAAAGTACGTTTTTTTGCTTATAATAGTGACCAGAGAAAGTAGTAGTGTACATGGTCAATGTATGACATGTATTTATGAGCGCAAGGAGTCATAATATAGGAAAATTAATTATATATTTATTACATTCTTATCTTTCTATAAAGGAAAATGCTGGATAACGCGAGGTGGAGCCTCGTGAAATTTCCAGAATGTGTTGGCAACATTCTGACCCTTTGATTTTATTTAATTGTTTCAATAACTGCTACTTCAAAAAAATATGGGAACCACGATGCCGTTTTTTCCGGGCCAGCATGAATTGTGATTGGTCTAACAAAGTCTCGGGACAAATTCTTGATAAAAAGCTTCGGGACAAATAGCATTGCTGTTCTATAAAATAAAATGGAAAATGTTAACTTAAGGGCATAAGTTAAGATGCTAAAAGTAAAATTATTTTTTTGGAAATTGTGTATTTAATATTATAAAAATTTAAATATTTATACTTTCAATACAAAATTTATTACTTATTTCCTTTTATACTCCCTCCGTCCCTTAATGTAACCACCCATTTGATTTTATTTTTGTCCCTAAATGTAACCCCCTTTTCAAATTACTAGATGCATTTATTACTTTTTTCCTAAACATACCCCTAATTAATACTACTAACTTGTCTTGAAATATGAATAGTCAAATTTAATACACATACTAACAAAGGACAATTTGGTAATATTAATACACAAAAGAGACACATTAATTACACTGACAACTTTTCTTAAGAAATGTGAAAAATGCAAAGGGGGGTTACATTAAGGGACGGAGGGAGTAGATCCTTAACTTGTATCCTTAGGGTACAAGTTAGCATTACCCAAATAAAATACTCTACAATTTTATTACATTCAATGCAATAGCACCTTGAAAGTAGTAGTATACTTTAGAATTGATGAGTTTATGAACCCGAAACACGGTGGCCTATCAACTGGAACTAAATATCAACTAGAAAAATACAGTATGTTTTAGAAAGTAGCACATACTTCCCCGATTACATTTATAAACAAATACCAACTTTTTAGGTTAATTGAATATCTAAAGTATATGATCTATATATAGGTCAGATACATTAGTTATTCGATGAATCTAAAAAATTACTTCATTCGGTCTTTTTTATAAGAAACAAAAGAGACATAAATCATTAAGACCAAGGAAATATATTATACTCCCTCTTCGGTCCTTTTTATAAGAAATATAAGTGAATAGTTATTTTCATTTAATACACCTCTACATTTAAAATCTTCCGTGAATACCCTTAAATTAATTACTACTTTTGATTCAACCAACTTACTTACTTTTAATATTCTCTGTCATAATAAATAAGGGCACAAATGAAATTTAACTTCAAACACACTTGAAAATTGGTCAATGTTACCTATAAAAAGGACCAAAAAAATATTCACTTATATTTCTTATAAAAAGGACCGAAGAGGAGTATTTTTTGCTTATAAATATAACCAGAGTAAGTATTCATTAAAACTATACTCCACTTGTAGTAATTAATACAGCAACAAATTGTAGGTTGTGACCAACAATTAGAATTATCATGAGGGTAAATTAGACACTTTAGTTCAAAATAAATAGGACAGACCACATTCCTTAAAAATGTGATTTTATTGATTTTGTTTATTTGCAACGGAGGGAGTATTAACTTTTCCGTTAATATATGGTCAAAATAAGTTATATAAATAGTGCACATGGTCAAACTTTGACATGTATTTATGAGCGGATAAAGTACTAATATAGGAAAAATAATTACATATTTATTACATTCTTATCTTTCTTTAAAATAAAACAAATCAATTTTATTTAAGAGCAAATCTATCTTTTAACATTATTATTTTTTGACTCTTTATTTTTCTCTTCTTTTTATATTTTCTTTGTTAGTTTTTTACATTTTTTATTATATTTTCTCTTTCGATTACTCTTCTTCTTTCTTCTTTTAAAGATGAGTAGTGGAAAGAAAAATATAATAAAAAAATGAAAAAGGTAAAAAAAAAAAAAAAATAGGAAGGAGAAAAAATAATTAAGGAATTAATGGGTTAGTTTATTATATCATAAAAATGATTGTTAATTTATTGGTTTAGAAAACAAATACTCCGGAGTATATATCAAAACCCTTACATTTGTGATTGAATCATAAAAGTCCCAAGTAAGAGAATTAATATGTTTGGTTGTTGTATTGAATTTGTTGACAATTACTCTGTGCGCGCGCGCGCGTGCGTGTTGAAAATAATATTTAATATAGACATTATTTACCAATTATTAGAGATCATAAAATAACAAAATAATATTAAAATGATACAAATATAAATTAATTTTTTACTTTTACAAACTTTGATCACACACTACTTGTCTTAATATATTTAGAACAACCGACATCGAATTACATACCACTTGAGCTTCGAGTGAACATGTTTACAAAATTTGACGTACGAAAATATTTTCAAAGACAAAAAAATGAAGCCTAATACGGAGCCTAAAAAATTCGAGGGCCTAAAGCCCCTGCTTTAGTGGCAGCCCCCTTAGACCAGCCCTGCTATGTAGCATTGTTTTATAATTTTATTCTTCATCATATATAACTACTCAAGATAAATCTCTTATATTTTAGAGATAAAGATAAATCTTGGTTACACTGTTTTGTGTTAAACTACTCACTAATTGAATCTGTAAAAATCTGCTAGATGGACAAGCTATCTGTACTAGTTGACACTATTAAATACATGAAAGAGCTTAAAAATCGTTTGGAAGTTGTCGAAGAACAAAACAAGAAAGCAAAAAAAAAATCATCGACCAAACCATGCCTATGTAGCGATGAAGATTCTTCATCATGTGATGATAGTGTTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAATGTTAATTCGGATCCAATGTCAGGAGCACAAGGGGCTTCTAGTTAAAATAATGGTCGAAATTCAAAGATTTCAACTATTTGTTGTAAACAGCAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAGGTAGTTACCCATCCTTTAAATTGCCATTAAACATTTTTTTACCACTTTTAAACTCTTGGTTCCATCACTATTACTATTATTATATTGACAAATAGTTTTTTTAATTGTTATTATCTTATAATAAGTATTTTATTCTAAGTTGTTTTCTACAATATTTGCTTGGTATATTCATTTTCTTCTTCTTTTGATTTTGGTCTTTTTTTCTCCATGAAATTGTCCCTTATATCTAATATTATTTATATAATATTTTATAGTTGGGTGAAGGGTACAACTTGAGCACAAAAGAACTTGTGAAGAACGTACGCATGGCAATATTGAAGTTTATTGGTGAGGCCTACGTTACCCCTTCATGA
Protein sequence

>MS.gene056354.t1

MEEINNPAMKVSSISSWLTDLEMDEYNIFAEECNLNFLDADVGGFLSQDMSNVFQEQNKQQCLTLGSTSTNNLSKSFIHETIDNNDKINESLSPNISPSPSNSSFQFQIPSYDNPPNSTPSNSKENETISVSPTELENMNHSTETSKGSLEKENMETKTSKSKRPRAHGRDHIMAERNRREKLTQTFIALAALVPNLKKMDKLSVLVDTIKYMKELKNRLEVVEEQNKKAKKKSSTKPCLCSDEDSSSCDDSVECVVGSPFQVEARVLGKQMLIRIQCQEHKGLLVKIMVEIQRFQLFVVNSSVLPFGDSTLDITIIAQLGEGYNLSTKELVKNVRMAILKFIGEAYVTPS