Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33803.t1 | XP_013457028.1 | 86.3 | 322 | 42 | 1 | 1 | 320 | 55 | 376 | 4.90E-154 | 553.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33803.t1 | A0A072UMP5 | 86.3 | 322 | 42 | 1 | 1 | 320 | 55 | 376 | 3.5e-154 | 553.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene33803 | 0.80606 | 9.88E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene33803 | -0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene051946 | MS.gene33803 | 0.820491 | 6.67E-53 | -1.69E-46 |
| MS.gene05234 | MS.gene33803 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene33803 | 0.815482 | 9.04E-52 | -1.69E-46 |
| MS.gene054146 | MS.gene33803 | 0.814347 | 1.61E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene33803 | -0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene33803 | 0.804941 | 1.70E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene33803 | 0.815619 | 8.43E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene33803 | -0.815332 | 9.76E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene33803 | -0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene33803 | 0.813011 | 3.18E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene33803 | 0.800633 | 1.32E-48 | -1.69E-46 |
| MS.gene06077 | MS.gene33803 | -0.80124 | 9.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33803.t1 | MTR_4g088760 | 89.752 | 322 | 31 | 1 | 1 | 320 | 55 | 376 | 0.0 | 610 |
| MS.gene33803.t1 | MTR_4g088770 | 86.420 | 324 | 40 | 3 | 1 | 320 | 1 | 324 | 0.0 | 570 |
| MS.gene33803.t1 | MTR_2g013780 | 55.556 | 324 | 133 | 8 | 1 | 320 | 1 | 317 | 3.41e-120 | 348 |
| MS.gene33803.t1 | MTR_2g013880 | 48.718 | 312 | 148 | 6 | 6 | 314 | 10 | 312 | 6.58e-101 | 299 |
| MS.gene33803.t1 | MTR_4g078310 | 54.393 | 239 | 97 | 6 | 85 | 320 | 61 | 290 | 5.03e-83 | 253 |
| MS.gene33803.t1 | MTR_5g008720 | 32.906 | 234 | 140 | 5 | 66 | 287 | 12 | 240 | 6.95e-43 | 148 |
| MS.gene33803.t1 | MTR_4g132963 | 35.088 | 171 | 91 | 2 | 107 | 277 | 90 | 240 | 2.51e-31 | 119 |
| MS.gene33803.t1 | MTR_4g132940 | 35.088 | 171 | 91 | 2 | 107 | 277 | 90 | 240 | 2.51e-31 | 119 |
| MS.gene33803.t1 | MTR_7g083080 | 32.203 | 177 | 113 | 3 | 120 | 295 | 110 | 280 | 1.07e-30 | 118 |
| MS.gene33803.t1 | MTR_4g132970 | 35.294 | 170 | 90 | 3 | 108 | 277 | 112 | 261 | 1.59e-30 | 117 |
| MS.gene33803.t1 | MTR_1g041155 | 36.220 | 127 | 75 | 2 | 146 | 272 | 153 | 273 | 3.06e-29 | 115 |
| MS.gene33803.t1 | MTR_8g012240 | 36.090 | 133 | 84 | 1 | 146 | 277 | 131 | 263 | 1.58e-28 | 112 |
| MS.gene33803.t1 | MTR_2g025520 | 35.294 | 153 | 90 | 3 | 146 | 295 | 134 | 280 | 2.55e-27 | 109 |
| MS.gene33803.t1 | MTR_7g053310 | 37.594 | 133 | 81 | 2 | 146 | 277 | 120 | 251 | 1.06e-26 | 107 |
| MS.gene33803.t1 | MTR_1g076500 | 37.190 | 121 | 70 | 1 | 150 | 270 | 179 | 293 | 2.31e-26 | 107 |
| MS.gene33803.t1 | MTR_1g070970 | 28.649 | 185 | 109 | 4 | 146 | 313 | 167 | 345 | 1.27e-25 | 105 |
| MS.gene33803.t1 | MTR_7g095960 | 36.667 | 120 | 70 | 1 | 158 | 277 | 172 | 285 | 1.98e-25 | 104 |
| MS.gene33803.t1 | MTR_8g093440 | 29.787 | 141 | 96 | 2 | 148 | 285 | 22 | 162 | 6.12e-25 | 100 |
| MS.gene33803.t1 | MTR_8g093440 | 29.787 | 141 | 96 | 2 | 148 | 285 | 84 | 224 | 1.47e-24 | 100 |
| MS.gene33803.t1 | MTR_5g008720 | 27.389 | 157 | 99 | 4 | 66 | 212 | 12 | 163 | 4.28e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33803.t1 | AT4G32480 | 43.158 | 285 | 144 | 4 | 36 | 320 | 21 | 287 | 7.36e-79 | 242 |
| MS.gene33803.t1 | AT2G20670 | 46.186 | 236 | 122 | 4 | 88 | 320 | 61 | 294 | 8.25e-73 | 227 |
| MS.gene33803.t1 | AT3G07350 | 41.549 | 142 | 82 | 1 | 143 | 283 | 132 | 273 | 1.03e-37 | 136 |
| MS.gene33803.t1 | AT4G14620 | 33.500 | 200 | 107 | 4 | 79 | 277 | 94 | 268 | 1.18e-31 | 121 |
| MS.gene33803.t1 | AT3G25240 | 30.476 | 210 | 139 | 3 | 75 | 277 | 38 | 247 | 1.67e-30 | 117 |
| MS.gene33803.t1 | AT2G39650 | 28.947 | 190 | 127 | 3 | 87 | 276 | 59 | 240 | 5.08e-30 | 115 |
| MS.gene33803.t1 | AT2G39650 | 30.168 | 179 | 120 | 2 | 98 | 276 | 5 | 178 | 7.54e-30 | 114 |
| MS.gene33803.t1 | AT2G38820 | 35.484 | 124 | 74 | 2 | 147 | 270 | 160 | 277 | 2.56e-28 | 111 |
| MS.gene33803.t1 | AT3G22970 | 36.719 | 128 | 75 | 1 | 150 | 277 | 61 | 182 | 3.70e-28 | 110 |
| MS.gene33803.t1 | AT3G22970 | 38.462 | 117 | 66 | 1 | 159 | 275 | 181 | 291 | 4.58e-27 | 109 |
| MS.gene33803.t1 | AT1G62420 | 31.333 | 150 | 92 | 3 | 137 | 284 | 103 | 243 | 1.40e-24 | 101 |
| MS.gene33803.t1 | AT1G12030 | 32.061 | 131 | 82 | 2 | 148 | 277 | 112 | 236 | 1.14e-23 | 99.0 |
| MS.gene33803.t1 | AT3G54550 | 30.070 | 143 | 90 | 2 | 147 | 285 | 145 | 281 | 1.98e-23 | 98.2 |
| MS.gene33803.t1 | AT1G77160 | 29.412 | 136 | 84 | 2 | 147 | 270 | 26 | 161 | 1.49e-19 | 85.5 |
| MS.gene33803.t1 | AT1G77160 | 29.412 | 136 | 84 | 2 | 147 | 270 | 81 | 216 | 2.63e-19 | 86.3 |
| MS.gene33803.t1 | AT1G77145 | 29.412 | 136 | 84 | 2 | 147 | 270 | 76 | 211 | 5.30e-19 | 85.5 |
| MS.gene33803.t1 | AT1G77145 | 34.343 | 99 | 61 | 1 | 176 | 270 | 56 | 154 | 9.71e-16 | 75.1 |
Find 52 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGAGAAAGGAGATATT+AGG | 0.188794 | 4.4:+24022891 | MS.gene33803:CDS |
| AATGGTTAGGTCCATTTAAA+AGG | 0.208758 | 4.4:+24023128 | MS.gene33803:CDS |
| GTGCCATTTGTAATACTAAA+TGG | 0.269606 | 4.4:+24022206 | MS.gene33803:CDS |
| TTTAACAAATTCACTTTCAT+TGG | 0.286998 | 4.4:+24023156 | MS.gene33803:CDS |
| GATGCCTTTGGCTTCTGCTT+TGG | 0.308657 | 4.4:-24023202 | None:intergenic |
| ATAAATACATGCAAGCTAAA+TGG | 0.328450 | 4.4:+24023110 | MS.gene33803:CDS |
| CAACAGAACTTGTTCTGTAT+AGG | 0.353289 | 4.4:-24022027 | None:intergenic |
| TTAACAGCAGTATGCACATT+AGG | 0.362716 | 4.4:-24023256 | None:intergenic |
| CAAAGAGAAAGGAGATATTA+GGG | 0.363806 | 4.4:+24022892 | MS.gene33803:CDS |
| CCTCTATGTCCCGTGTTACT+AGG | 0.364191 | 4.4:+24021443 | MS.gene33803:CDS |
| GTCTCTAGCCAGCTTCAAAA+TGG | 0.376095 | 4.4:+24022172 | MS.gene33803:CDS |
| GATGATTGTGATGTGGGTTT+AGG | 0.377840 | 4.4:+24021559 | MS.gene33803:CDS |
| ACGGTTAACATTGATGCCTT+TGG | 0.384691 | 4.4:-24023214 | None:intergenic |
| CATAATCAAGATTATGTGTA+TGG | 0.427742 | 4.4:+24023033 | MS.gene33803:CDS |
| TTTCTTGATGATTGTGATGT+GGG | 0.428946 | 4.4:+24021553 | MS.gene33803:CDS |
| TTAACAAATTCACTTTCATT+GGG | 0.435046 | 4.4:+24023157 | MS.gene33803:CDS |
| TGAAGGTAACAATGATGAAA+AGG | 0.447535 | 4.4:+24021669 | MS.gene33803:CDS |
| CAATATGCAGAAACAAATCT+TGG | 0.470143 | 4.4:+24021514 | MS.gene33803:CDS |
| CTTTCGAGCACAATTTGAGA+TGG | 0.476688 | 4.4:+24022931 | MS.gene33803:CDS |
| AATTTACATAATCTTCCATC+AGG | 0.482120 | 4.4:+24022232 | MS.gene33803:CDS |
| TGTCCATTTAGTATTACAAA+TGG | 0.482896 | 4.4:-24022209 | None:intergenic |
| GATCAATTACCTGCAAAAGC+TGG | 0.486219 | 4.4:-24021717 | None:intergenic |
| GTTTCATCATGATAATCATA+TGG | 0.507505 | 4.4:+24021603 | MS.gene33803:CDS |
| GTTACTAGGTATTTGCCTGT+TGG | 0.508009 | 4.4:+24021457 | MS.gene33803:CDS |
| TACATGCAAGCTAAATGGTT+AGG | 0.510493 | 4.4:+24023115 | MS.gene33803:CDS |
| TTTCGAGCACAATTTGAGAT+GGG | 0.513578 | 4.4:+24022932 | MS.gene33803:CDS |
| GTTCTGTTGAAATAAGCATA+AGG | 0.516383 | 4.4:+24022041 | MS.gene33803:CDS |
| ATTTCTTGATGATTGTGATG+TGG | 0.528604 | 4.4:+24021552 | MS.gene33803:CDS |
| AATTCCCTACGAAAACCAAC+AGG | 0.540238 | 4.4:-24021472 | None:intergenic |
| TCATGATAATCATATGGAGC+TGG | 0.540787 | 4.4:+24021609 | MS.gene33803:CDS |
| TATAATACAAGCAAAGAGAA+AGG | 0.545101 | 4.4:+24022881 | MS.gene33803:CDS |
| TTACCTGCAAAAGCTGGAGT+TGG | 0.546418 | 4.4:-24021711 | None:intergenic |
| AAACTGCCTGAGGTTTATGT+AGG | 0.548204 | 4.4:+24022989 | MS.gene33803:CDS |
| AGAACTTGTTCTGTATAGGT+TGG | 0.552925 | 4.4:-24022023 | None:intergenic |
| AAATGTGAGAGGGTTAATGA+AGG | 0.598347 | 4.4:+24021652 | MS.gene33803:CDS |
| CAGGCAAATACCTAGTAACA+CGG | 0.599782 | 4.4:-24021453 | None:intergenic |
| TCTAGCCAGCTTCAAAATGG+TGG | 0.603969 | 4.4:+24022175 | MS.gene33803:CDS |
| AAATTGGAGTGCATTTGCAG+TGG | 0.605257 | 4.4:+24022103 | MS.gene33803:CDS |
| ACAAAATGCACATGGGACCA+TGG | 0.611544 | 4.4:+24023080 | MS.gene33803:CDS |
| AGATGATGATAAATGTGAGA+GGG | 0.614187 | 4.4:+24021642 | MS.gene33803:CDS |
| AATATTCTCTAATAAATCAA+CGG | 0.615399 | 4.4:-24023233 | None:intergenic |
| AAGATGATGATAAATGTGAG+AGG | 0.616437 | 4.4:+24021641 | MS.gene33803:CDS |
| TTTCATTGGGATATTCTGAG+AGG | 0.630945 | 4.4:+24023170 | MS.gene33803:CDS |
| CAGGCAGTTTCCTCACAAGA+CGG | 0.640039 | 4.4:-24022976 | None:intergenic |
| CCTAGTAACACGGGACATAG+AGG | 0.641395 | 4.4:-24021443 | None:intergenic |
| TAGTCCAAAGCAGAAGCCAA+AGG | 0.641419 | 4.4:+24023198 | MS.gene33803:CDS |
| GAAAGAAAACAAAATGCACA+TGG | 0.645963 | 4.4:+24023072 | MS.gene33803:CDS |
| AAGACTATAACCGTCTTGTG+AGG | 0.648618 | 4.4:+24022966 | MS.gene33803:CDS |
| TCTTGTGAGGAAACTGCCTG+AGG | 0.665039 | 4.4:+24022979 | MS.gene33803:CDS |
| AAAGAAAACAAAATGCACAT+GGG | 0.675749 | 4.4:+24023073 | MS.gene33803:CDS |
| TGCATTTGCAGTGGACAGAG+TGG | 0.676752 | 4.4:+24022112 | MS.gene33803:CDS |
| AGGCAAATACCTAGTAACAC+GGG | 0.687681 | 4.4:-24021452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAGCTATTTTAATAATAA+TGG | + | chr4.4:24022490-24022509 | MS.gene33803:intron | 10.0% |
| !!! | TATTTTAATAATAATGGATT+AGG | + | chr4.4:24022496-24022515 | MS.gene33803:intron | 10.0% |
| !!! | TTTTTATAATCTATAACAAA+CGG | + | chr4.4:24022742-24022761 | MS.gene33803:intron | 10.0% |
| !! | AAATATAGATCATAAATCAA+TGG | - | chr4.4:24021742-24021761 | None:intergenic | 15.0% |
| !! | AATATTCTCTAATAAATCAA+CGG | - | chr4.4:24023236-24023255 | None:intergenic | 15.0% |
| !! | ATTATAATAGTGTAATTGTT+AGG | - | chr4.4:24022828-24022847 | None:intergenic | 15.0% |
| !!! | ATGAAAAGGATAAAATTTTT+TGG | + | chr4.4:24021683-24021702 | MS.gene33803:CDS | 15.0% |
| !!! | CTATTTAATTTCAAAATGTA+AGG | - | chr4.4:24022769-24022788 | None:intergenic | 15.0% |
| !!! | TATATTTTTTCAAAAGTAAC+AGG | + | chr4.4:24022532-24022551 | MS.gene33803:intron | 15.0% |
| !!! | TGAAAAGGATAAAATTTTTT+GGG | + | chr4.4:24021684-24021703 | MS.gene33803:CDS | 15.0% |
| !! | AAAAATAAATGGATCGAAAT+TGG | + | chr4.4:24022087-24022106 | MS.gene33803:CDS | 20.0% |
| !! | AAATGAATTATCACAAATCA+AGG | - | chr4.4:24021826-24021845 | None:intergenic | 20.0% |
| !! | AATCAAGAGGAAAAAATTTA+GGG | + | chr4.4:24022621-24022640 | MS.gene33803:intron | 20.0% |
| !! | AATTAAATCAAATTACCTGA+TGG | - | chr4.4:24022250-24022269 | None:intergenic | 20.0% |
| !! | ACAAGACAAATAAAACTTAT+GGG | + | chr4.4:24022652-24022671 | MS.gene33803:intron | 20.0% |
| !! | GAAGCAATTGAAAAAATAAA+TGG | + | chr4.4:24022076-24022095 | MS.gene33803:CDS | 20.0% |
| !! | TACAAGACAAATAAAACTTA+TGG | + | chr4.4:24022651-24022670 | MS.gene33803:intron | 20.0% |
| !! | TACACTATTATAATTATGCA+GGG | + | chr4.4:24022834-24022853 | MS.gene33803:intron | 20.0% |
| !! | TTAACAAATTCACTTTCATT+GGG | + | chr4.4:24023157-24023176 | MS.gene33803:CDS | 20.0% |
| !! | TTACAACTTCATGATAAAAA+AGG | + | chr4.4:24021872-24021891 | MS.gene33803:intron | 20.0% |
| !! | TTACACTATTATAATTATGC+AGG | + | chr4.4:24022833-24022852 | MS.gene33803:intron | 20.0% |
| !! | TTTAACAAATTCACTTTCAT+TGG | + | chr4.4:24023156-24023175 | MS.gene33803:CDS | 20.0% |
| !!! | ATAATAATGGATTAGGTATT+AGG | + | chr4.4:24022503-24022522 | MS.gene33803:intron | 20.0% |
| !!! | ATATTAAGTTGATCACAAAA+AGG | - | chr4.4:24022711-24022730 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCATTTTTTGAGA+CGG | + | chr4.4:24022338-24022357 | MS.gene33803:intron | 20.0% |
| !!! | GAGTAACTTTTTTTAATAAG+AGG | - | chr4.4:24022559-24022578 | None:intergenic | 20.0% |
| !!! | TCTAAGATGTTATGTTTTTT+TGG | + | chr4.4:24022577-24022596 | MS.gene33803:intron | 20.0% |
| ! | AAAGAAAACAAAATGCACAT+GGG | + | chr4.4:24023073-24023092 | MS.gene33803:CDS | 25.0% |
| ! | AATTTACATAATCTTCCATC+AGG | + | chr4.4:24022232-24022251 | MS.gene33803:CDS | 25.0% |
| ! | ACACTATTATAATTATGCAG+GGG | + | chr4.4:24022835-24022854 | MS.gene33803:intron | 25.0% |
| ! | AGGTTAAAATATATCATGTG+AGG | - | chr4.4:24022399-24022418 | None:intergenic | 25.0% |
| ! | ATAAATACATGCAAGCTAAA+TGG | + | chr4.4:24023110-24023129 | MS.gene33803:CDS | 25.0% |
| ! | CAATCAAGAGGAAAAAATTT+AGG | + | chr4.4:24022620-24022639 | MS.gene33803:intron | 25.0% |
| ! | CATAATCAAGATTATGTGTA+TGG | + | chr4.4:24023033-24023052 | MS.gene33803:CDS | 25.0% |
| ! | GCACTAAATCAAAATCAATT+TGG | - | chr4.4:24022000-24022019 | None:intergenic | 25.0% |
| ! | GTTTCATCATGATAATCATA+TGG | + | chr4.4:24021603-24021622 | MS.gene33803:CDS | 25.0% |
| ! | TAATGATCCTGATTAATGAT+AGG | - | chr4.4:24022474-24022493 | None:intergenic | 25.0% |
| ! | TATAATACAAGCAAAGAGAA+AGG | + | chr4.4:24022881-24022900 | MS.gene33803:CDS | 25.0% |
| ! | TGTCCATTTAGTATTACAAA+TGG | - | chr4.4:24022212-24022231 | None:intergenic | 25.0% |
| !! | ATGTATTTATGTTTTCTCCA+TGG | - | chr4.4:24023100-24023119 | None:intergenic | 25.0% |
| !! | TATTTTCTTCTTGTGCTAAT+AGG | + | chr4.4:24021780-24021799 | MS.gene33803:intron | 25.0% |
| !!! | CTAAATTTTTTCCTCTTGAT+TGG | - | chr4.4:24022622-24022641 | None:intergenic | 25.0% |
| !!! | CTTAGGGTTTTTTTTTGAAA+GGG | - | chr4.4:24022429-24022448 | None:intergenic | 25.0% |
| !!! | GTTAAAGTGTTCCTTTTAAA+TGG | - | chr4.4:24023142-24023161 | None:intergenic | 25.0% |
| !!! | TTGTTAGCTTTATTTTTGAG+AGG | + | chr4.4:24021961-24021980 | MS.gene33803:intron | 25.0% |
| !!! | TTTTTTGAAAGGGACTTTTA+AGG | - | chr4.4:24022419-24022438 | None:intergenic | 25.0% |
| AAGATGATGATAAATGTGAG+AGG | + | chr4.4:24021641-24021660 | MS.gene33803:CDS | 30.0% | |
| AATGGTTAGGTCCATTTAAA+AGG | + | chr4.4:24023128-24023147 | MS.gene33803:CDS | 30.0% | |
| AGAGAAAGGTAAAAAAGCTT+AGG | - | chr4.4:24022446-24022465 | None:intergenic | 30.0% | |
| AGATGATGATAAATGTGAGA+GGG | + | chr4.4:24021642-24021661 | MS.gene33803:CDS | 30.0% | |
| CAAAGAGAAAGGAGATATTA+GGG | + | chr4.4:24022892-24022911 | MS.gene33803:CDS | 30.0% | |
| CAATATGCAGAAACAAATCT+TGG | + | chr4.4:24021514-24021533 | MS.gene33803:CDS | 30.0% | |
| GAAAGAAAACAAAATGCACA+TGG | + | chr4.4:24023072-24023091 | MS.gene33803:CDS | 30.0% | |
| GAGAAAGGTAAAAAAGCTTA+GGG | - | chr4.4:24022445-24022464 | None:intergenic | 30.0% | |
| GTTCTGTTGAAATAAGCATA+AGG | + | chr4.4:24022041-24022060 | MS.gene33803:CDS | 30.0% | |
| TGAAGGTAACAATGATGAAA+AGG | + | chr4.4:24021669-24021688 | MS.gene33803:CDS | 30.0% | |
| ! | ATTTCTTGATGATTGTGATG+TGG | + | chr4.4:24021552-24021571 | MS.gene33803:CDS | 30.0% |
| ! | TTTCTTGATGATTGTGATGT+GGG | + | chr4.4:24021553-24021572 | MS.gene33803:CDS | 30.0% |
| ! | TTTTGGCCATGTAATTAAGT+GGG | + | chr4.4:24022594-24022613 | MS.gene33803:intron | 30.0% |
| !! | GTGCCATTTGTAATACTAAA+TGG | + | chr4.4:24022206-24022225 | MS.gene33803:CDS | 30.0% |
| !! | TTTTTGGCCATGTAATTAAG+TGG | + | chr4.4:24022593-24022612 | MS.gene33803:intron | 30.0% |
| !!! | GCTTAGGGTTTTTTTTTGAA+AGG | - | chr4.4:24022430-24022449 | None:intergenic | 30.0% |
| AAATGTGAGAGGGTTAATGA+AGG | + | chr4.4:24021652-24021671 | MS.gene33803:CDS | 35.0% | |
| AATGATAGGACTACAGAGAA+AGG | - | chr4.4:24022460-24022479 | None:intergenic | 35.0% | |
| CTGTAGTCCTATCATTAATC+AGG | + | chr4.4:24022464-24022483 | MS.gene33803:intron | 35.0% | |
| GCAAAGAGAAAGGAGATATT+AGG | + | chr4.4:24022891-24022910 | MS.gene33803:CDS | 35.0% | |
| TACATGCAAGCTAAATGGTT+AGG | + | chr4.4:24023115-24023134 | MS.gene33803:CDS | 35.0% | |
| TCATGATAATCATATGGAGC+TGG | + | chr4.4:24021609-24021628 | MS.gene33803:CDS | 35.0% | |
| TGATTTCCCACTTGAACAAA+GGG | + | chr4.4:24021927-24021946 | MS.gene33803:intron | 35.0% | |
| TTAACAGCAGTATGCACATT+AGG | - | chr4.4:24023259-24023278 | None:intergenic | 35.0% | |
| TTGGAACCCACTTAATTACA+TGG | - | chr4.4:24022603-24022622 | None:intergenic | 35.0% | |
| TTTCATTGGGATATTCTGAG+AGG | + | chr4.4:24023170-24023189 | MS.gene33803:CDS | 35.0% | |
| ! | AGAACTTGTTCTGTATAGGT+TGG | - | chr4.4:24022026-24022045 | None:intergenic | 35.0% |
| ! | CAACAGAACTTGTTCTGTAT+AGG | - | chr4.4:24022030-24022049 | None:intergenic | 35.0% |
| ! | TTTCGAGCACAATTTGAGAT+GGG | + | chr4.4:24022932-24022951 | MS.gene33803:CDS | 35.0% |
| !!! | TAAAACCACCATTTTGAAGC+TGG | - | chr4.4:24022183-24022202 | None:intergenic | 35.0% |
| AAACTGCCTGAGGTTTATGT+AGG | + | chr4.4:24022989-24023008 | MS.gene33803:CDS | 40.0% | |
| AAATTGGAGTGCATTTGCAG+TGG | + | chr4.4:24022103-24022122 | MS.gene33803:CDS | 40.0% | |
| AAGACTATAACCGTCTTGTG+AGG | + | chr4.4:24022966-24022985 | MS.gene33803:CDS | 40.0% | |
| AATTCCCTACGAAAACCAAC+AGG | - | chr4.4:24021475-24021494 | None:intergenic | 40.0% | |
| ACGGTTAACATTGATGCCTT+TGG | - | chr4.4:24023217-24023236 | None:intergenic | 40.0% | |
| AGGCAAATACCTAGTAACAC+GGG | - | chr4.4:24021455-24021474 | None:intergenic | 40.0% | |
| ATTACGACCCTTTGTTCAAG+TGG | - | chr4.4:24021937-24021956 | None:intergenic | 40.0% | |
| CAGGCAAATACCTAGTAACA+CGG | - | chr4.4:24021456-24021475 | None:intergenic | 40.0% | |
| CTTTCGAGCACAATTTGAGA+TGG | + | chr4.4:24022931-24022950 | MS.gene33803:CDS | 40.0% | |
| GATCAATTACCTGCAAAAGC+TGG | - | chr4.4:24021720-24021739 | None:intergenic | 40.0% | |
| GATGATTGTGATGTGGGTTT+AGG | + | chr4.4:24021559-24021578 | MS.gene33803:CDS | 40.0% | |
| GTGATTTCCCACTTGAACAA+AGG | + | chr4.4:24021926-24021945 | MS.gene33803:intron | 40.0% | |
| GTTACTAGGTATTTGCCTGT+TGG | + | chr4.4:24021457-24021476 | MS.gene33803:CDS | 40.0% | |
| TTACGACCCTTTGTTCAAGT+GGG | - | chr4.4:24021936-24021955 | None:intergenic | 40.0% | |
| ! | GCTTTTCCTACATAAACCTC+AGG | - | chr4.4:24022998-24023017 | None:intergenic | 40.0% |
| ! | TTAAGTGGGTTCCAATCAAG+AGG | + | chr4.4:24022608-24022627 | MS.gene33803:intron | 40.0% |
| !!! | ATTTGCCTGTTGGTTTTCGT+AGG | + | chr4.4:24021467-24021486 | MS.gene33803:CDS | 40.0% |
| !!! | TTTGCCTGTTGGTTTTCGTA+GGG | + | chr4.4:24021468-24021487 | MS.gene33803:CDS | 40.0% |
| ACAAAATGCACATGGGACCA+TGG | + | chr4.4:24023080-24023099 | MS.gene33803:CDS | 45.0% | |
| GTCTCTAGCCAGCTTCAAAA+TGG | + | chr4.4:24022172-24022191 | MS.gene33803:CDS | 45.0% | |
| TAGTCCAAAGCAGAAGCCAA+AGG | + | chr4.4:24023198-24023217 | MS.gene33803:CDS | 45.0% | |
| TCTAGCCAGCTTCAAAATGG+TGG | + | chr4.4:24022175-24022194 | MS.gene33803:CDS | 45.0% | |
| TTACCTGCAAAAGCTGGAGT+TGG | - | chr4.4:24021714-24021733 | None:intergenic | 45.0% | |
| !! | TGCAGGGGAGCATACATTTT+TGG | + | chr4.4:24022850-24022869 | MS.gene33803:intron | 45.0% |
| !! | AATAATAAAAGTAAAATTAA+AGG | - | chr4.4:24021853-24021872 | None:intergenic | 5.0% |
| CAGGCAGTTTCCTCACAAGA+CGG | - | chr4.4:24022979-24022998 | None:intergenic | 50.0% | |
| CCTAGTAACACGGGACATAG+AGG | - | chr4.4:24021446-24021465 | None:intergenic | 50.0% | |
| TCTTGTGAGGAAACTGCCTG+AGG | + | chr4.4:24022979-24022998 | MS.gene33803:CDS | 50.0% | |
| TGCATTTGCAGTGGACAGAG+TGG | + | chr4.4:24022112-24022131 | MS.gene33803:CDS | 50.0% | |
| ! | CAACCAACTCCAGCTTTTGC+AGG | + | chr4.4:24021708-24021727 | MS.gene33803:CDS | 50.0% |
| ! | CCTCTATGTCCCGTGTTACT+AGG | + | chr4.4:24021443-24021462 | MS.gene33803:CDS | 50.0% |
| ! | GATGCCTTTGGCTTCTGCTT+TGG | - | chr4.4:24023205-24023224 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24021433 | 24023288 | 24021433 | ID=MS.gene33803 |
| chr4.4 | mRNA | 24021433 | 24023288 | 24021433 | ID=MS.gene33803.t1;Parent=MS.gene33803 |
| chr4.4 | exon | 24021433 | 24021729 | 24021433 | ID=MS.gene33803.t1.exon1;Parent=MS.gene33803.t1 |
| chr4.4 | CDS | 24021433 | 24021729 | 24021433 | ID=cds.MS.gene33803.t1;Parent=MS.gene33803.t1 |
| chr4.4 | exon | 24022022 | 24022253 | 24022022 | ID=MS.gene33803.t1.exon2;Parent=MS.gene33803.t1 |
| chr4.4 | CDS | 24022022 | 24022253 | 24022022 | ID=cds.MS.gene33803.t1;Parent=MS.gene33803.t1 |
| chr4.4 | exon | 24022855 | 24023288 | 24022855 | ID=MS.gene33803.t1.exon3;Parent=MS.gene33803.t1 |
| chr4.4 | CDS | 24022855 | 24023288 | 24022855 | ID=cds.MS.gene33803.t1;Parent=MS.gene33803.t1 |
| Gene Sequence |
| Protein sequence |
