Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34409.t1 | AAK63815.1 | 99 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 2.30E-85 | 325.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34409.t1 | P11432 | 76.4 | 199 | 44 | 1 | 1 | 199 | 1 | 196 | 2.2e-73 | 276.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34409.t1 | Q94F86 | 99.0 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 1.6e-85 | 325.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051617 | MS.gene34409 | 0.80272 | 4.91E-49 | -1.69E-46 |
MS.gene051734 | MS.gene34409 | 0.811635 | 6.34E-51 | -1.69E-46 |
MS.gene052188 | MS.gene34409 | 0.811991 | 5.31E-51 | -1.69E-46 |
MS.gene052469 | MS.gene34409 | 0.827451 | 1.55E-54 | -1.69E-46 |
MS.gene052870 | MS.gene34409 | 0.841676 | 4.11E-58 | -1.69E-46 |
MS.gene052872 | MS.gene34409 | 0.835475 | 1.64E-56 | -1.69E-46 |
MS.gene053449 | MS.gene34409 | 0.805237 | 1.47E-49 | -1.69E-46 |
MS.gene054349 | MS.gene34409 | 0.809859 | 1.54E-50 | -1.69E-46 |
MS.gene05494 | MS.gene34409 | 0.802614 | 5.16E-49 | -1.69E-46 |
MS.gene055539 | MS.gene34409 | 0.826595 | 2.49E-54 | -1.69E-46 |
MS.gene055741 | MS.gene34409 | 0.803073 | 4.15E-49 | -1.69E-46 |
MS.gene055744 | MS.gene34409 | 0.805076 | 1.59E-49 | -1.69E-46 |
MS.gene056876 | MS.gene34409 | 0.805121 | 1.56E-49 | -1.69E-46 |
MS.gene057927 | MS.gene34409 | 0.80131 | 9.56E-49 | -1.69E-46 |
MS.gene059717 | MS.gene34409 | 0.828564 | 8.38E-55 | -1.69E-46 |
MS.gene060981 | MS.gene34409 | 0.808751 | 2.66E-50 | -1.69E-46 |
MS.gene061154 | MS.gene34409 | 0.806752 | 7.06E-50 | -1.69E-46 |
MS.gene061231 | MS.gene34409 | 0.813331 | 2.70E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34409.t1 | MTR_1g102780 | 97.000 | 200 | 5 | 1 | 1 | 199 | 1 | 200 | 2.25e-138 | 385 |
MS.gene34409.t1 | MTR_1g102800 | 91.960 | 199 | 14 | 1 | 1 | 199 | 1 | 197 | 5.32e-110 | 313 |
MS.gene34409.t1 | MTR_1g102570 | 88.333 | 180 | 19 | 1 | 20 | 199 | 21 | 198 | 4.52e-109 | 310 |
MS.gene34409.t1 | MTR_1g102830 | 81.667 | 180 | 19 | 2 | 20 | 199 | 21 | 186 | 2.51e-101 | 290 |
MS.gene34409.t1 | MTR_1g102810 | 78.142 | 183 | 26 | 2 | 17 | 199 | 14 | 182 | 1.69e-98 | 283 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34409.t1 | AT3G22840 | 53.731 | 201 | 85 | 4 | 1 | 199 | 1 | 195 | 2.72e-62 | 192 |
MS.gene34409.t1 | AT4G14690 | 50.990 | 202 | 87 | 4 | 1 | 199 | 1 | 193 | 8.78e-57 | 178 |
Find 56 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGAAGGGATGTTGTTAAAT+TGG | 0.214729 | 1.2:+76355379 | None:intergenic |
GGTGCTGATGGTGGTGTAAT+TGG | 0.245963 | 1.2:+76355091 | None:intergenic |
TGGTGGAATTCCATGGTTCT+TGG | 0.288858 | 1.2:-76354746 | MS.gene34409:CDS |
GGTGGAATTCCATGGTTCTT+GGG | 0.299911 | 1.2:-76354745 | MS.gene34409:CDS |
GTTGGTTGTGGTTGTGGTGG+TGG | 0.344690 | 1.2:+76355064 | None:intergenic |
TGTGGTTGTGGTGGTGGAGT+TGG | 0.352890 | 1.2:+76355070 | None:intergenic |
ATTGGGTCTACAGGCACCTT+TGG | 0.360861 | 1.2:+76355109 | None:intergenic |
TATGTTGGGTTTGATTGCTT+TGG | 0.370659 | 1.2:-76354605 | MS.gene34409:CDS |
AATGGAAGGTTGGCTATGAT+TGG | 0.393839 | 1.2:-76354832 | MS.gene34409:CDS |
GGTCTGTTTGATCAAATATC+TGG | 0.404965 | 1.2:-76354769 | MS.gene34409:CDS |
CCATTGATTCTCTCAGGTGC+TGG | 0.411549 | 1.2:+76354850 | None:intergenic |
GGTGGTGGAGTTGGTGCTGA+TGG | 0.417357 | 1.2:+76355079 | None:intergenic |
AACCTTCCATTGATTCTCTC+AGG | 0.436061 | 1.2:+76354844 | None:intergenic |
GTGCTGATGGTGGTGTAATT+GGG | 0.440700 | 1.2:+76355092 | None:intergenic |
GTATAGGTTGGTTGTGGTTG+TGG | 0.448474 | 1.2:+76355058 | None:intergenic |
GAATGGTAGAATTGCTATGT+TGG | 0.450278 | 1.2:-76354620 | MS.gene34409:CDS |
CTAGCATTTCTTCTCAAGCT+TGG | 0.450671 | 1.2:+76355348 | None:intergenic |
CACCTTTGGTGAACGTGTAT+AGG | 0.459386 | 1.2:+76355042 | None:intergenic |
TTGTTAAATTGGTTAACTCT+AGG | 0.463045 | 1.2:+76355390 | None:intergenic |
GTGGAATTCCATGGTTCTTG+GGG | 0.468120 | 1.2:-76354744 | MS.gene34409:CDS |
GGTGGAGTTGGTGCTGATGG+TGG | 0.468618 | 1.2:+76355082 | None:intergenic |
CGGATTTGATGGCATTTGGT+GGG | 0.485102 | 1.2:-76354873 | MS.gene34409:CDS |
TCGGATTTGATGGCATTTGG+TGG | 0.487791 | 1.2:-76354874 | MS.gene34409:CDS |
GAAATGCTAGCCTCAAAGTT+CGG | 0.488413 | 1.2:-76355335 | MS.gene34409:CDS |
AATGGTAGAATTGCTATGTT+GGG | 0.492247 | 1.2:-76354619 | MS.gene34409:CDS |
TCTAGGCCTGCTAGAAATGC+TGG | 0.515845 | 1.2:+76355407 | None:intergenic |
GGTGGTGTAATTGGGTCTAC+AGG | 0.516474 | 1.2:+76355100 | None:intergenic |
CCAGCACCTGAGAGAATCAA+TGG | 0.516939 | 1.2:-76354850 | MS.gene34409:CDS |
TAGGTTGGTTGTGGTTGTGG+TGG | 0.520190 | 1.2:+76355061 | None:intergenic |
CAGCCATGGACCGAACTTTG+AGG | 0.527132 | 1.2:+76355325 | None:intergenic |
CGAAAACATTACCTCAGCCA+TGG | 0.528935 | 1.2:+76355311 | None:intergenic |
CAAAGTTCGGTCCATGGCTG+AGG | 0.533870 | 1.2:-76355322 | MS.gene34409:intron |
GGTGGAGATAGCAAATGGAC+AGG | 0.537366 | 1.2:-76354791 | MS.gene34409:CDS |
AGTGTGGAGTCTAAGTCAAA+AGG | 0.538159 | 1.2:-76354670 | MS.gene34409:CDS |
CCATGACCAGCATTTCTAGC+AGG | 0.549312 | 1.2:-76355413 | MS.gene34409:CDS |
CCTGCTAGAAATGCTGGTCA+TGG | 0.550870 | 1.2:+76355413 | None:intergenic |
GAACGTGTATAGGTTGGTTG+TGG | 0.557227 | 1.2:+76355052 | None:intergenic |
TGAGAGAATCAATGGAAGGT+TGG | 0.560259 | 1.2:-76354842 | MS.gene34409:CDS |
TAGACTCCACACTAACCCCT+TGG | 0.562091 | 1.2:+76354680 | None:intergenic |
TAGCCTCAAAGTTCGGTCCA+TGG | 0.581082 | 1.2:-76355328 | MS.gene34409:CDS |
AAGCTTGGCATATACACAGA+AGG | 0.589450 | 1.2:+76355363 | None:intergenic |
CTATAGAAATCTATTACACA+AGG | 0.595515 | 1.2:+76354554 | None:intergenic |
AACCTATACACGTTCACCAA+AGG | 0.599727 | 1.2:-76355044 | MS.gene34409:intron |
TGTCCTCAGATGCTGAGTTG+TGG | 0.599794 | 1.2:-76354642 | MS.gene34409:CDS |
ATTCCACAACTCAGCATCTG+AGG | 0.606044 | 1.2:+76354639 | None:intergenic |
TTTGATCAAATATCTGGTGG+TGG | 0.612951 | 1.2:-76354763 | MS.gene34409:CDS |
TTTGGTGAACGTGTATAGGT+TGG | 0.617927 | 1.2:+76355046 | None:intergenic |
AGCTTGGCATATACACAGAA+GGG | 0.622653 | 1.2:+76355364 | None:intergenic |
TATCTGGTGGTGGAATTCCA+TGG | 0.624337 | 1.2:-76354753 | MS.gene34409:CDS |
CTGTTTGATCAAATATCTGG+TGG | 0.626873 | 1.2:-76354766 | MS.gene34409:CDS |
AGGGCAGAAAGAGCAACCAA+AGG | 0.630670 | 1.2:-76355125 | MS.gene34409:CDS |
ACACTTGTCCCCAAGAACCA+TGG | 0.633615 | 1.2:+76354736 | None:intergenic |
GTGGAGATAGCAAATGGACA+GGG | 0.635471 | 1.2:-76354790 | MS.gene34409:CDS |
TCAGATGCTGAGTTGTGGAA+TGG | 0.641735 | 1.2:-76354637 | MS.gene34409:CDS |
CACCTGAGAGAATCAATGGA+AGG | 0.646646 | 1.2:-76354846 | MS.gene34409:CDS |
TATAGAAATCTATTACACAA+GGG | 0.717921 | 1.2:+76354555 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAATAATGATGAAAATA+TGG | - | chr1.2:76355102-76355121 | MS.gene34409:CDS | 10.0% |
!! | CATCATTATTATTTATTAAA+AGG | + | chr1.2:76355096-76355115 | None:intergenic | 10.0% |
!!! | AGTTTTTCATTACATTTATC+AGG | - | chr1.2:76354868-76354887 | MS.gene34409:CDS | 20.0% |
! | TTCATTACATTTATCAGGAA+GGG | - | chr1.2:76354873-76354892 | MS.gene34409:CDS | 25.0% |
! | TTGTTAAATTGGTTAACTCT+AGG | + | chr1.2:76354630-76354649 | None:intergenic | 25.0% |
! | TTTCATTACATTTATCAGGA+AGG | - | chr1.2:76354872-76354891 | MS.gene34409:CDS | 25.0% |
!! | CGAAAACAGATTTAACTTTA+AGG | - | chr1.2:76354727-76354746 | MS.gene34409:CDS | 25.0% |
!! | GCTTTTACAGAATATGTTAA+GGG | - | chr1.2:76355434-76355453 | MS.gene34409:CDS | 25.0% |
AATGGTAGAATTGCTATGTT+GGG | - | chr1.2:76355398-76355417 | MS.gene34409:CDS | 30.0% | |
TGCATAATGCAACAAGTTAA+TGG | - | chr1.2:76354783-76354802 | MS.gene34409:CDS | 30.0% | |
! | GGCTTTTACAGAATATGTTA+AGG | - | chr1.2:76355433-76355452 | MS.gene34409:CDS | 30.0% |
!! | CTTTGATTCCATTTTTCCAA+GGG | - | chr1.2:76355321-76355340 | MS.gene34409:intron | 30.0% |
!! | TCTTTGATTCCATTTTTCCA+AGG | - | chr1.2:76355320-76355339 | MS.gene34409:intron | 30.0% |
!! | TTTGATTCCATTTTTCCAAG+GGG | - | chr1.2:76355322-76355341 | MS.gene34409:intron | 30.0% |
CAGAAGGGATGTTGTTAAAT+TGG | + | chr1.2:76354641-76354660 | None:intergenic | 35.0% | |
CTGTTTGATCAAATATCTGG+TGG | - | chr1.2:76355251-76355270 | MS.gene34409:intron | 35.0% | |
GAATGGTAGAATTGCTATGT+TGG | - | chr1.2:76355397-76355416 | MS.gene34409:CDS | 35.0% | |
GGTCTGTTTGATCAAATATC+TGG | - | chr1.2:76355248-76355267 | MS.gene34409:intron | 35.0% | |
TATGTTGGGTTTGATTGCTT+TGG | - | chr1.2:76355412-76355431 | MS.gene34409:CDS | 35.0% | |
TTTACTACTATGCTCACCTT+TGG | + | chr1.2:76354992-76355011 | None:intergenic | 35.0% | |
TTTGATCAAATATCTGGTGG+TGG | - | chr1.2:76355254-76355273 | MS.gene34409:intron | 35.0% | |
! | CACAAAGTTTTCGGATTTGA+TGG | - | chr1.2:76355133-76355152 | MS.gene34409:intron | 35.0% |
!! | TTTTCGGATTTGATGGCATT+TGG | - | chr1.2:76355140-76355159 | MS.gene34409:intron | 35.0% |
!!! | ATTGGTTTTGTAGCTGCTAT+GGG | - | chr1.2:76355203-76355222 | MS.gene34409:intron | 35.0% |
AACCTATACACGTTCACCAA+AGG | - | chr1.2:76354973-76354992 | MS.gene34409:intron | 40.0% | |
AAGCTTGGCATATACACAGA+AGG | + | chr1.2:76354657-76354676 | None:intergenic | 40.0% | |
ACACTAACCCCTTGGAAAAA+TGG | + | chr1.2:76355332-76355351 | None:intergenic | 40.0% | |
AGCTTGGCATATACACAGAA+GGG | + | chr1.2:76354656-76354675 | None:intergenic | 40.0% | |
AGTGTGGAGTCTAAGTCAAA+AGG | - | chr1.2:76355347-76355366 | MS.gene34409:CDS | 40.0% | |
CTAGCATTTCTTCTCAAGCT+TGG | + | chr1.2:76354672-76354691 | None:intergenic | 40.0% | |
TGAGAGAATCAATGGAAGGT+TGG | - | chr1.2:76355175-76355194 | MS.gene34409:intron | 40.0% | |
TTTGGTGAACGTGTATAGGT+TGG | + | chr1.2:76354974-76354993 | None:intergenic | 40.0% | |
! | AATGGAAGGTTGGCTATGAT+TGG | - | chr1.2:76355185-76355204 | MS.gene34409:intron | 40.0% |
! | GAAATGCTAGCCTCAAAGTT+CGG | - | chr1.2:76354682-76354701 | MS.gene34409:CDS | 40.0% |
! | GCAGATGAGCACAAAGTTTT+CGG | - | chr1.2:76355124-76355143 | MS.gene34409:CDS | 40.0% |
!! | AACCTTCCATTGATTCTCTC+AGG | + | chr1.2:76355176-76355195 | None:intergenic | 40.0% |
!! | ATTTTTCCAAGGGGTTAGTG+TGG | - | chr1.2:76355331-76355350 | MS.gene34409:CDS | 40.0% |
!!! | GATTGGTTTTGTAGCTGCTA+TGG | - | chr1.2:76355202-76355221 | MS.gene34409:intron | 40.0% |
!!! | TTGGTTTTGTAGCTGCTATG+GGG | - | chr1.2:76355204-76355223 | MS.gene34409:intron | 40.0% |
ATTCCACAACTCAGCATCTG+AGG | + | chr1.2:76355381-76355400 | None:intergenic | 45.0% | |
CACCTGAGAGAATCAATGGA+AGG | - | chr1.2:76355171-76355190 | MS.gene34409:intron | 45.0% | |
CACCTTTGGTGAACGTGTAT+AGG | + | chr1.2:76354978-76354997 | None:intergenic | 45.0% | |
CGAAAACATTACCTCAGCCA+TGG | + | chr1.2:76354709-76354728 | None:intergenic | 45.0% | |
GGTGGAATTCCATGGTTCTT+GGG | - | chr1.2:76355272-76355291 | MS.gene34409:intron | 45.0% | |
GTGGAATTCCATGGTTCTTG+GGG | - | chr1.2:76355273-76355292 | MS.gene34409:intron | 45.0% | |
GTGGAGATAGCAAATGGACA+GGG | - | chr1.2:76355227-76355246 | MS.gene34409:intron | 45.0% | |
TCAGATGCTGAGTTGTGGAA+TGG | - | chr1.2:76355380-76355399 | MS.gene34409:CDS | 45.0% | |
TGGTGGAATTCCATGGTTCT+TGG | - | chr1.2:76355271-76355290 | MS.gene34409:intron | 45.0% | |
! | CGGATTTGATGGCATTTGGT+GGG | - | chr1.2:76355144-76355163 | MS.gene34409:intron | 45.0% |
! | TCGGATTTGATGGCATTTGG+TGG | - | chr1.2:76355143-76355162 | MS.gene34409:intron | 45.0% |
!! | GAACGTGTATAGGTTGGTTG+TGG | + | chr1.2:76354968-76354987 | None:intergenic | 45.0% |
!! | GTATAGGTTGGTTGTGGTTG+TGG | + | chr1.2:76354962-76354981 | None:intergenic | 45.0% |
!! | GTGCTGATGGTGGTGTAATT+GGG | + | chr1.2:76354928-76354947 | None:intergenic | 45.0% |
!! | TATCTGGTGGTGGAATTCCA+TGG | - | chr1.2:76355264-76355283 | MS.gene34409:intron | 45.0% |
!!! | TGGTTTTGTAGCTGCTATGG+GGG | - | chr1.2:76355205-76355224 | MS.gene34409:intron | 45.0% |
!! | ATCATTATTATTTATTAAAA+GGG | + | chr1.2:76355095-76355114 | None:intergenic | 5.0% |
ACACTTGTCCCCAAGAACCA+TGG | + | chr1.2:76355284-76355303 | None:intergenic | 50.0% | |
AGGGCAGAAAGAGCAACCAA+AGG | - | chr1.2:76354892-76354911 | MS.gene34409:CDS | 50.0% | |
ATGGGGGTGGAGATAGCAAA+TGG | - | chr1.2:76355221-76355240 | MS.gene34409:intron | 50.0% | |
ATTGGGTCTACAGGCACCTT+TGG | + | chr1.2:76354911-76354930 | None:intergenic | 50.0% | |
CCAGCACCTGAGAGAATCAA+TGG | - | chr1.2:76355167-76355186 | MS.gene34409:intron | 50.0% | |
CCTGCTAGAAATGCTGGTCA+TGG | + | chr1.2:76354607-76354626 | None:intergenic | 50.0% | |
GGTGGAGATAGCAAATGGAC+AGG | - | chr1.2:76355226-76355245 | MS.gene34409:intron | 50.0% | |
GGTGGTGTAATTGGGTCTAC+AGG | + | chr1.2:76354920-76354939 | None:intergenic | 50.0% | |
TAGACTCCACACTAACCCCT+TGG | + | chr1.2:76355340-76355359 | None:intergenic | 50.0% | |
TAGCCTCAAAGTTCGGTCCA+TGG | - | chr1.2:76354689-76354708 | MS.gene34409:CDS | 50.0% | |
TCTAGGCCTGCTAGAAATGC+TGG | + | chr1.2:76354613-76354632 | None:intergenic | 50.0% | |
TGTCCTCAGATGCTGAGTTG+TGG | - | chr1.2:76355375-76355394 | MS.gene34409:CDS | 50.0% | |
! | TTTTGTAGCTGCTATGGGGG+TGG | - | chr1.2:76355208-76355227 | MS.gene34409:intron | 50.0% |
!! | CCATGACCAGCATTTCTAGC+AGG | - | chr1.2:76354604-76354623 | MS.gene34409:CDS | 50.0% |
!! | CCATTGATTCTCTCAGGTGC+TGG | + | chr1.2:76355170-76355189 | None:intergenic | 50.0% |
!! | GGTGCTGATGGTGGTGTAAT+TGG | + | chr1.2:76354929-76354948 | None:intergenic | 50.0% |
!! | TAGGTTGGTTGTGGTTGTGG+TGG | + | chr1.2:76354959-76354978 | None:intergenic | 50.0% |
CAAAGTTCGGTCCATGGCTG+AGG | - | chr1.2:76354695-76354714 | MS.gene34409:CDS | 55.0% | |
CAGCCATGGACCGAACTTTG+AGG | + | chr1.2:76354695-76354714 | None:intergenic | 55.0% | |
GTTGGTTGTGGTTGTGGTGG+TGG | + | chr1.2:76354956-76354975 | None:intergenic | 55.0% | |
!! | TGTGGTTGTGGTGGTGGAGT+TGG | + | chr1.2:76354950-76354969 | None:intergenic | 55.0% |
!! | GGTGGAGTTGGTGCTGATGG+TGG | + | chr1.2:76354938-76354957 | None:intergenic | 60.0% |
!! | GGTGGTGGAGTTGGTGCTGA+TGG | + | chr1.2:76354941-76354960 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 76354567 | 76355472 | 76354567 | ID=MS.gene34409 |
chr1.2 | mRNA | 76354567 | 76355472 | 76354567 | ID=MS.gene34409.t1;Parent=MS.gene34409 |
chr1.2 | exon | 76355323 | 76355472 | 76355323 | ID=MS.gene34409.t1.exon1;Parent=MS.gene34409.t1 |
chr1.2 | CDS | 76355323 | 76355472 | 76355323 | ID=cds.MS.gene34409.t1;Parent=MS.gene34409.t1 |
chr1.2 | exon | 76355045 | 76355149 | 76355045 | ID=MS.gene34409.t1.exon2;Parent=MS.gene34409.t1 |
chr1.2 | CDS | 76355045 | 76355149 | 76355045 | ID=cds.MS.gene34409.t1;Parent=MS.gene34409.t1 |
chr1.2 | exon | 76354567 | 76354911 | 76354567 | ID=MS.gene34409.t1.exon3;Parent=MS.gene34409.t1 |
chr1.2 | CDS | 76354567 | 76354911 | 76354567 | ID=cds.MS.gene34409.t1;Parent=MS.gene34409.t1 |
Gene Sequence |
Protein sequence |