Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34478.t1 | XP_013469685.1 | 96.5 | 959 | 30 | 1 | 1 | 959 | 118 | 1072 | 0.00E+00 | 1798.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34478.t1 | O65607 | 65.5 | 895 | 296 | 7 | 1 | 885 | 124 | 1015 | 0.0e+00 | 1127.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34478.t1 | A0A072VPI7 | 96.5 | 959 | 30 | 1 | 1 | 959 | 118 | 1072 | 0.0e+00 | 1798.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene34478 | MS.gene28806 | PPI |
MS.gene04418 | MS.gene34478 | PPI |
MS.gene05640 | MS.gene34478 | PPI |
MS.gene049266 | MS.gene34478 | PPI |
MS.gene07047 | MS.gene34478 | PPI |
MS.gene34478 | MS.gene050408 | PPI |
MS.gene04079 | MS.gene34478 | PPI |
MS.gene34478 | MS.gene072703 | PPI |
MS.gene34478 | MS.gene06380 | PPI |
MS.gene08109 | MS.gene34478 | PPI |
MS.gene34478 | MS.gene013296 | PPI |
MS.gene34478 | MS.gene40912 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34478.t1 | MTR_1g100683 | 96.976 | 959 | 25 | 1 | 1 | 959 | 118 | 1072 | 0.0 | 1917 |
MS.gene34478.t1 | MTR_1g100683 | 96.976 | 959 | 25 | 1 | 1 | 959 | 118 | 1072 | 0.0 | 1917 |
MS.gene34478.t1 | MTR_7g109470 | 29.025 | 944 | 528 | 29 | 1 | 880 | 356 | 1221 | 1.35e-75 | 271 |
MS.gene34478.t1 | MTR_4g111945 | 40.071 | 282 | 148 | 6 | 609 | 879 | 590 | 861 | 6.95e-51 | 194 |
MS.gene34478.t1 | MTR_5g093110 | 26.763 | 624 | 371 | 21 | 289 | 874 | 182 | 757 | 1.11e-43 | 171 |
MS.gene34478.t1 | MTR_6g086270 | 37.818 | 275 | 150 | 7 | 613 | 871 | 816 | 1085 | 9.06e-41 | 163 |
MS.gene34478.t1 | MTR_6g086270 | 27.103 | 321 | 194 | 12 | 46 | 360 | 388 | 674 | 1.23e-12 | 72.8 |
MS.gene34478.t1 | MTR_1g045670 | 32.632 | 190 | 116 | 3 | 682 | 871 | 766 | 943 | 1.14e-16 | 85.9 |
MS.gene34478.t1 | MTR_5g068600 | 28.194 | 227 | 130 | 5 | 682 | 904 | 432 | 629 | 2.33e-16 | 84.7 |
MS.gene34478.t1 | MTR_5g068600 | 28.634 | 227 | 129 | 5 | 682 | 904 | 332 | 529 | 2.87e-16 | 84.0 |
MS.gene34478.t1 | MTR_4g088920 | 33.071 | 127 | 83 | 2 | 682 | 807 | 428 | 553 | 2.10e-15 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34478.t1 | AT4G25540 | 62.073 | 965 | 336 | 11 | 1 | 953 | 124 | 1070 | 0.0 | 1175 |
MS.gene34478.t1 | AT4G02070 | 28.950 | 943 | 565 | 31 | 1 | 894 | 399 | 1285 | 3.53e-76 | 273 |
MS.gene34478.t1 | AT4G02070 | 28.950 | 943 | 565 | 31 | 1 | 894 | 396 | 1282 | 3.83e-76 | 273 |
MS.gene34478.t1 | AT3G18524 | 27.683 | 643 | 410 | 19 | 292 | 915 | 294 | 900 | 4.09e-58 | 216 |
MS.gene34478.t1 | AT4G17380 | 36.923 | 260 | 146 | 8 | 634 | 892 | 507 | 749 | 1.45e-40 | 161 |
MS.gene34478.t1 | AT3G24495 | 35.517 | 290 | 164 | 8 | 602 | 871 | 752 | 1038 | 2.74e-40 | 162 |
MS.gene34478.t1 | AT3G24495 | 25.067 | 375 | 231 | 12 | 1 | 361 | 287 | 625 | 1.14e-13 | 76.3 |
MS.gene34478.t1 | AT3G20475 | 35.294 | 289 | 169 | 9 | 599 | 880 | 484 | 761 | 6.00e-40 | 159 |
MS.gene34478.t1 | AT4G17380 | 42.458 | 179 | 97 | 4 | 634 | 812 | 507 | 679 | 1.62e-37 | 151 |
MS.gene34478.t1 | AT3G20475 | 37.037 | 270 | 152 | 10 | 599 | 861 | 484 | 742 | 4.74e-37 | 150 |
MS.gene34478.t1 | AT3G20475 | 36.882 | 263 | 148 | 10 | 599 | 854 | 484 | 735 | 9.97e-36 | 146 |
MS.gene34478.t1 | AT5G54090 | 30.252 | 238 | 139 | 5 | 682 | 908 | 438 | 659 | 7.70e-19 | 92.4 |
MS.gene34478.t1 | AT3G24320 | 32.850 | 207 | 125 | 4 | 667 | 871 | 503 | 697 | 6.10e-18 | 89.7 |
MS.gene34478.t1 | AT3G24320 | 32.850 | 207 | 125 | 4 | 667 | 871 | 748 | 942 | 7.95e-18 | 89.7 |
MS.gene34478.t1 | AT1G65070 | 31.250 | 160 | 104 | 4 | 667 | 822 | 385 | 542 | 7.99e-14 | 76.3 |
MS.gene34478.t1 | AT1G65070 | 29.570 | 186 | 118 | 5 | 648 | 822 | 359 | 542 | 1.01e-13 | 76.3 |
MS.gene34478.t1 | AT1G65070 | 29.570 | 186 | 118 | 5 | 648 | 822 | 359 | 542 | 1.03e-13 | 76.3 |
MS.gene34478.t1 | AT1G65070 | 29.570 | 186 | 118 | 5 | 648 | 822 | 359 | 542 | 1.26e-13 | 75.9 |
MS.gene34478.t1 | AT3G24495 | 25.067 | 375 | 231 | 12 | 1 | 361 | 287 | 625 | 1.62e-13 | 75.5 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTAAAAGTGCCTTTAAAT+TGG | 0.154160 | 1.2:+75481421 | MS.gene34478:CDS |
AATCACACTCTTACTATATT+TGG | 0.156585 | 1.2:+75479657 | MS.gene34478:CDS |
TTTACTTTAACCCAATTTAA+AGG | 0.163743 | 1.2:-75481432 | None:intergenic |
TCTCCTGCTGAGTTGCTTCT+TGG | 0.182974 | 1.2:+75474845 | MS.gene34478:CDS |
TTGGAATATATGTGTGTTTC+TGG | 0.185265 | 1.2:+75480797 | MS.gene34478:CDS |
TCGACGGGAGATGTTGTTTA+TGG | 0.202150 | 1.2:+75474767 | MS.gene34478:CDS |
GTTTACTAGTGCTTCTAATT+TGG | 0.208298 | 1.2:-75483363 | None:intergenic |
TGCCATTCTTTCAAGAAATA+AGG | 0.210957 | 1.2:+75481650 | MS.gene34478:CDS |
ACGGCTCGGAATGCGGAAAT+TGG | 0.216042 | 1.2:+75480778 | MS.gene34478:CDS |
GCATCCTCTACAAGTGTTAT+TGG | 0.222801 | 1.2:+75480470 | MS.gene34478:CDS |
GCTTGAGGCGGCGCATGATA+TGG | 0.233393 | 1.2:+75474604 | MS.gene34478:CDS |
TGTTGTGGAGAAGAGTATTT+TGG | 0.257117 | 1.2:+75474673 | MS.gene34478:CDS |
CACTGTCCGCATCAAGAATT+TGG | 0.274491 | 1.2:+75483458 | MS.gene34478:CDS |
GTTTCCAGGCTAGCAATCTT+TGG | 0.287281 | 1.2:-75482596 | None:intergenic |
GATCTATTATTAGTTATTAC+TGG | 0.290771 | 1.2:+75476555 | MS.gene34478:intron |
GATTGTCACTGGACCCAATA+TGG | 0.295792 | 1.2:+75482000 | MS.gene34478:CDS |
TGAGAATGCTGCTAGGGTTC+TGG | 0.296288 | 1.2:+75474379 | MS.gene34478:CDS |
CCTGACAAACCTCGACAAAA+TGG | 0.311412 | 1.2:-75474563 | None:intergenic |
AAGTCTCGCTCAATTCTTCT+AGG | 0.316427 | 1.2:-75482418 | None:intergenic |
CTCTTACTATATTTGGTTCC+AGG | 0.318033 | 1.2:+75479664 | MS.gene34478:CDS |
GTATATCAGGTGCCCGGCCC+AGG | 0.325648 | 1.2:-75479996 | None:intergenic |
AGCCTGGAAATTCAGTTTCC+AGG | 0.335870 | 1.2:-75482610 | None:intergenic |
TTGGATAATGAGTGACAAAT+AGG | 0.337443 | 1.2:-75482577 | None:intergenic |
TCTTGCTCTTGATCAATAAC+AGG | 0.342654 | 1.2:-75483428 | None:intergenic |
CTTGAGGCGGCGCATGATAT+GGG | 0.347667 | 1.2:+75474605 | MS.gene34478:CDS |
GTAATCCCACGCTGTATATC+AGG | 0.349821 | 1.2:-75480009 | None:intergenic |
GGTGTTTCTGAGAGAAGTTT+TGG | 0.350688 | 1.2:+75482734 | MS.gene34478:CDS |
TCCAATGCTGTCACTACTTC+AGG | 0.352461 | 1.2:-75481486 | None:intergenic |
GTTCCAGGCTTCTTAAACAT+TGG | 0.360925 | 1.2:+75479679 | MS.gene34478:CDS |
AACCTTATTTCTTGAAAGAA+TGG | 0.366750 | 1.2:-75481652 | None:intergenic |
GTTCAGATGCAAATTTGTTC+TGG | 0.369966 | 1.2:+75481782 | MS.gene34478:CDS |
TGAGTTGGCTGTCGAAGCTT+TGG | 0.374349 | 1.2:+75478643 | MS.gene34478:CDS |
TGTAAAAGTGCCTTTAAATT+GGG | 0.375046 | 1.2:+75481422 | MS.gene34478:CDS |
TACTGTCAGAAGCGCCCATC+CGG | 0.387453 | 1.2:-75482373 | None:intergenic |
TCCGCATTCCGAGCCGTTTG+CGG | 0.388107 | 1.2:-75480772 | None:intergenic |
GCGTGCATGCTTGTATCATT+TGG | 0.392560 | 1.2:-75481959 | None:intergenic |
GAAGAATCTTGGACGCTTTG+AGG | 0.394660 | 1.2:+75479909 | MS.gene34478:CDS |
TTCTGTGCTCAGGTGCTTTG+AGG | 0.396657 | 1.2:+75478708 | MS.gene34478:CDS |
GAGAATGCTGCTAGGGTTCT+GGG | 0.401026 | 1.2:+75474380 | MS.gene34478:CDS |
AGCTAATACACTTCAACAAC+TGG | 0.403145 | 1.2:+75478763 | MS.gene34478:CDS |
TTATCCAAAGATTGCTAGCC+TGG | 0.407892 | 1.2:+75482592 | MS.gene34478:CDS |
GTTAGCGCACATACTTTCAT+TGG | 0.412002 | 1.2:+75479963 | MS.gene34478:CDS |
ACTCTGCTTGCCAAGGAGAT+TGG | 0.413169 | 1.2:+75480528 | MS.gene34478:CDS |
AACAATGAATTGACTGAGCT+TGG | 0.417774 | 1.2:+75476709 | MS.gene34478:CDS |
CTTCAAATGGCGAATAGTTA+AGG | 0.418426 | 1.2:-75478666 | None:intergenic |
TGTAATGGTATGAAGAATCT+TGG | 0.419362 | 1.2:+75479898 | MS.gene34478:CDS |
TTCCAGGCTTCTTAAACATT+GGG | 0.420803 | 1.2:+75479680 | MS.gene34478:CDS |
ATTCGCCATTTGAAGGGATT+CGG | 0.423556 | 1.2:+75478674 | MS.gene34478:CDS |
AGTGACATCTTCATGATCAT+TGG | 0.425696 | 1.2:-75482690 | None:intergenic |
CTGGTTATACTTGATGAGCT+TGG | 0.425757 | 1.2:+75482473 | MS.gene34478:CDS |
CTTAACTATTCGCCATTTGA+AGG | 0.425842 | 1.2:+75478667 | MS.gene34478:CDS |
TGGAACAAAATTATTCTGTA+AGG | 0.426987 | 1.2:-75481939 | None:intergenic |
TTAAGTCCCATGGTTTGAAT+CGG | 0.432685 | 1.2:+75474534 | MS.gene34478:CDS |
CTGTTGCCTGCCGAGCTGCA+TGG | 0.436855 | 1.2:+75481538 | MS.gene34478:CDS |
TGAAAGTATGTGCGCTAACT+CGG | 0.437377 | 1.2:-75479959 | None:intergenic |
GATGTGAGGATTGGGATTGT+TGG | 0.441507 | 1.2:+75474734 | MS.gene34478:CDS |
AGCCTGGAAACTGAATTTCC+AGG | 0.441723 | 1.2:+75482608 | MS.gene34478:CDS |
TGGTTATACTTGATGAGCTT+GGG | 0.443899 | 1.2:+75482474 | MS.gene34478:CDS |
AGCAGAATACATGGTAGATC+AGG | 0.445656 | 1.2:+75483386 | MS.gene34478:CDS |
GAACAAATTTGCATCTGAAC+AGG | 0.446299 | 1.2:-75481779 | None:intergenic |
TGATATGCTGCTACAGAGCC+TGG | 0.451470 | 1.2:-75482626 | None:intergenic |
TGGACATTTAATCGAAAAGT+TGG | 0.456102 | 1.2:-75474446 | None:intergenic |
AAACTATTTCTCACCTCAGA+TGG | 0.458381 | 1.2:-75480057 | None:intergenic |
TGATTGACTTGTACCGCAAA+CGG | 0.460262 | 1.2:+75480759 | MS.gene34478:CDS |
ACGCTCCACACGAGCATTTG+AGG | 0.461836 | 1.2:-75476593 | None:intergenic |
GTTATCCCATGCAGCTCGGC+AGG | 0.468651 | 1.2:-75481544 | None:intergenic |
TAATTATTTGTTGTGTGTTG+TGG | 0.471022 | 1.2:+75474658 | MS.gene34478:CDS |
TACCCAATGTTTAAGAAGCC+TGG | 0.471739 | 1.2:-75479682 | None:intergenic |
GTGAGGAGGCTTGTCAGTGC+AGG | 0.472677 | 1.2:+75474470 | MS.gene34478:CDS |
TTTGAAAGAATTCTGTGCTC+AGG | 0.473475 | 1.2:+75478698 | MS.gene34478:CDS |
CAAAACCGAATCCCTTCAAA+TGG | 0.478795 | 1.2:-75478679 | None:intergenic |
GACTTGTACCGCAAACGGCT+CGG | 0.482281 | 1.2:+75480764 | MS.gene34478:CDS |
ATCTGAAATCGCAGAGTCCA+TGG | 0.488575 | 1.2:+75479870 | MS.gene34478:CDS |
TAAGTCCCATGGTTTGAATC+GGG | 0.490341 | 1.2:+75474535 | MS.gene34478:CDS |
ATCAGCAAAACTGCATGTCC+TGG | 0.492985 | 1.2:+75482337 | MS.gene34478:CDS |
TGGTGTAACTCACTTGATAG+AGG | 0.496881 | 1.2:+75480817 | MS.gene34478:CDS |
GTGAATTTACCTGTGCAAGC+TGG | 0.497088 | 1.2:-75482769 | None:intergenic |
AACTATTTCTCACCTCAGAT+GGG | 0.502885 | 1.2:-75480056 | None:intergenic |
ATTGTCACTGGACCCAATAT+GGG | 0.503569 | 1.2:+75482001 | MS.gene34478:CDS |
TAGATGTACAGAACGTTCAC+TGG | 0.510813 | 1.2:+75482454 | MS.gene34478:CDS |
TGTTGCCTGCCGAGCTGCAT+GGG | 0.510976 | 1.2:+75481539 | MS.gene34478:CDS |
TTGAGGCGGCGCATGATATG+GGG | 0.511532 | 1.2:+75474606 | MS.gene34478:CDS |
ACACAACAAATAATTATTCA+CGG | 0.511670 | 1.2:-75474651 | None:intergenic |
CACTGACAAGCCTCCTCACA+TGG | 0.514857 | 1.2:-75474466 | None:intergenic |
CACGCTGTATATCAGGTGCC+CGG | 0.515705 | 1.2:-75480002 | None:intergenic |
TCATATTTGTCCAATCTCCT+TGG | 0.516334 | 1.2:-75480538 | None:intergenic |
CTAGTGCTTGAACAGAAGCT+TGG | 0.516722 | 1.2:-75481602 | None:intergenic |
TCGCAAAGACATTAGTTAGC+AGG | 0.516902 | 1.2:+75483591 | MS.gene34478:CDS |
AAAGAATGGCAAGCGAATGC+AGG | 0.516950 | 1.2:-75481638 | None:intergenic |
TCTGATCGCTCTCATGGCTC+AGG | 0.523504 | 1.2:+75482054 | MS.gene34478:CDS |
ATTAAGACGAGCAGCAATCA+AGG | 0.523706 | 1.2:-75479842 | None:intergenic |
TGAATTTACCTGTGCAAGCT+GGG | 0.527013 | 1.2:-75482768 | None:intergenic |
CAAAACTGCATGTCCTGGAC+GGG | 0.528188 | 1.2:+75482342 | MS.gene34478:CDS |
TAAGGTTGCCCAGCTTGCAC+AGG | 0.528331 | 1.2:+75482760 | MS.gene34478:CDS |
GAGTCCATGGGAACTTGTAA+TGG | 0.530308 | 1.2:+75479883 | MS.gene34478:CDS |
GTCAGTGCAGGGTATAAAGT+TGG | 0.531280 | 1.2:+75474482 | MS.gene34478:CDS |
TCAAGGTTTGATCACACAAT+GGG | 0.532861 | 1.2:-75479825 | None:intergenic |
TCTCCAAGAAGCAACTCAGC+AGG | 0.533436 | 1.2:-75474848 | None:intergenic |
CTAGTAAACAGCAGAATACA+TGG | 0.536333 | 1.2:+75483377 | MS.gene34478:CDS |
CTTCGACAGCCAACTCAGGC+AGG | 0.536386 | 1.2:-75478637 | None:intergenic |
TCCCATGGTTTGAATCGGGC+CGG | 0.538865 | 1.2:+75474539 | MS.gene34478:CDS |
ATACTTGATGAGCTTGGGAG+AGG | 0.542558 | 1.2:+75482479 | MS.gene34478:CDS |
GAAAGTATGTGCGCTAACTC+GGG | 0.542970 | 1.2:-75479958 | None:intergenic |
TTGAATTATGGTGTGGAAGG+TGG | 0.544265 | 1.2:+75474707 | MS.gene34478:CDS |
ATAGCACAAAGAAAACAATT+CGG | 0.544679 | 1.2:+75481454 | MS.gene34478:CDS |
TGAGGCGGCGCATGATATGG+GGG | 0.545773 | 1.2:+75474607 | MS.gene34478:CDS |
GAGTACTGTCAGATTGTCAC+TGG | 0.546918 | 1.2:+75481989 | MS.gene34478:CDS |
GGACGGGATTTACACCCGGA+TGG | 0.546986 | 1.2:+75482358 | MS.gene34478:CDS |
TCCGGGTGTAAATCCCGTCC+AGG | 0.547902 | 1.2:-75482355 | None:intergenic |
AGTATCTCTGATCGCTCTCA+TGG | 0.548767 | 1.2:+75482048 | MS.gene34478:CDS |
TATATCAGGTGCCCGGCCCA+GGG | 0.549217 | 1.2:-75479995 | None:intergenic |
TGCTGATGATGCTGGTACAA+AGG | 0.549322 | 1.2:-75482321 | None:intergenic |
GACGGGATTTACACCCGGAT+GGG | 0.551654 | 1.2:+75482359 | MS.gene34478:CDS |
TACGAAGGCCACGCTTGAGG+CGG | 0.553669 | 1.2:+75474592 | MS.gene34478:CDS |
GACCGGCCCGATTCAAACCA+TGG | 0.555950 | 1.2:-75474541 | None:intergenic |
TTAACTATTCGCCATTTGAA+GGG | 0.556174 | 1.2:+75478668 | MS.gene34478:CDS |
TGAGAGCGATCAGAGATACT+TGG | 0.556186 | 1.2:-75482045 | None:intergenic |
CTCGCTCAATTCTTCTAGGA+AGG | 0.557105 | 1.2:-75482414 | None:intergenic |
ATCATGCGCCGCCTCAAGCG+TGG | 0.557718 | 1.2:-75474600 | None:intergenic |
CTGCATGGGATAACTTTCTG+AGG | 0.559444 | 1.2:+75481553 | MS.gene34478:CDS |
GGTGATGAACCTGCCTGAGT+TGG | 0.560257 | 1.2:+75478628 | MS.gene34478:CDS |
TCTGAAGCAGAAGAAAAGCT+TGG | 0.568542 | 1.2:+75482553 | MS.gene34478:CDS |
TCTGGGTATTTATGCTCACA+TGG | 0.570725 | 1.2:+75474397 | MS.gene34478:CDS |
TACAAGTACGCATGATGGCA+TGG | 0.572756 | 1.2:+75482502 | MS.gene34478:CDS |
TTCGATTAAATGTCCATGTG+AGG | 0.574732 | 1.2:+75474453 | MS.gene34478:CDS |
TTCAGCAAAAGCGCCTCCGT+TGG | 0.576824 | 1.2:-75476635 | None:intergenic |
ATAGGTAAATACAGCTCGAA+AGG | 0.576981 | 1.2:+75480703 | MS.gene34478:intron |
GAGGATTGGGATTGTTGGTG+TGG | 0.577876 | 1.2:+75474739 | MS.gene34478:CDS |
CGGCTTCAGCAACTTAACAT+AGG | 0.578965 | 1.2:+75480383 | MS.gene34478:CDS |
GTTGGTGTGGAGATATCGAC+GGG | 0.579122 | 1.2:+75474752 | MS.gene34478:CDS |
ATTTCTGTATTGCTTACGAA+GGG | 0.580218 | 1.2:-75478731 | None:intergenic |
ACCGCAAACGGCTCGGAATG+CGG | 0.582344 | 1.2:+75480771 | MS.gene34478:CDS |
AAGATGCTGAGAATGCTGCT+AGG | 0.582576 | 1.2:+75474372 | MS.gene34478:CDS |
GCAAAACTGCATGTCCTGGA+CGG | 0.584058 | 1.2:+75482341 | MS.gene34478:CDS |
CAGATGGGGTAGCAGTGCGA+TGG | 0.584605 | 1.2:-75480041 | None:intergenic |
AATGAAGACTCTGCTTGCCA+AGG | 0.585602 | 1.2:+75480521 | MS.gene34478:CDS |
ACCCTCCTCAAATGCTCGTG+TGG | 0.586421 | 1.2:+75476588 | MS.gene34478:CDS |
GCAGAGTCTTCATTTAGAGA+TGG | 0.587258 | 1.2:-75480512 | None:intergenic |
TCCTGAAGTAGTGACAGCAT+TGG | 0.587314 | 1.2:+75481485 | MS.gene34478:CDS |
AGATGCTGAGAATGCTGCTA+GGG | 0.587696 | 1.2:+75474373 | MS.gene34478:CDS |
GATTAAATGTCCATGTGAGG+AGG | 0.587869 | 1.2:+75474456 | MS.gene34478:CDS |
TCCTGGACGGGATTTACACC+CGG | 0.588888 | 1.2:+75482354 | MS.gene34478:CDS |
AAAGCTTCGACAGCCAACTC+AGG | 0.592282 | 1.2:-75478641 | None:intergenic |
ACCGGCCCGATTCAAACCAT+GGG | 0.592594 | 1.2:-75474540 | None:intergenic |
ACTGCTGCTATTAAGTCCCA+TGG | 0.594444 | 1.2:+75474524 | MS.gene34478:CDS |
CATTAGCCGAGCTATTGTCA+TGG | 0.594677 | 1.2:+75483337 | MS.gene34478:CDS |
ACTGTCAGAAGCGCCCATCC+GGG | 0.595251 | 1.2:-75482372 | None:intergenic |
TCTGAAATCGCAGAGTCCAT+GGG | 0.597436 | 1.2:+75479871 | MS.gene34478:CDS |
CATACCATTACAAGTTCCCA+TGG | 0.599441 | 1.2:-75479887 | None:intergenic |
TTGTCACTGGACCCAATATG+GGG | 0.599824 | 1.2:+75482002 | MS.gene34478:CDS |
AATCTGACAGTACTCTCTAT+CGG | 0.600944 | 1.2:-75481981 | None:intergenic |
ATTACCAATAACACTTGTAG+AGG | 0.603159 | 1.2:-75480474 | None:intergenic |
CATTTCTGTATTGCTTACGA+AGG | 0.606746 | 1.2:-75478732 | None:intergenic |
AGATAAAATAGCTTGAACAA+TGG | 0.606851 | 1.2:-75480351 | None:intergenic |
TGAGGAGGCTTGTCAGTGCA+GGG | 0.607620 | 1.2:+75474471 | MS.gene34478:CDS |
GAAAGTTATCCCATGCAGCT+CGG | 0.610699 | 1.2:-75481548 | None:intergenic |
CAAACCTCGACAAAATGGAC+CGG | 0.614082 | 1.2:-75474558 | None:intergenic |
CAAATTCTTGATGCGGACAG+TGG | 0.615135 | 1.2:-75483457 | None:intergenic |
TGGAAGCCATGACAATAGCT+CGG | 0.615635 | 1.2:-75483343 | None:intergenic |
GTATACGAAGGCCACGCTTG+AGG | 0.615784 | 1.2:+75474589 | MS.gene34478:CDS |
TATCTATATAAACTCGTACC+TGG | 0.617343 | 1.2:+75482713 | MS.gene34478:CDS |
AGAGGTACAAGTACGCATGA+TGG | 0.618922 | 1.2:+75482497 | MS.gene34478:CDS |
AAATTGAATTATGGTGTGGA+AGG | 0.618948 | 1.2:+75474704 | MS.gene34478:CDS |
AACTGAGGAGCAATTTCCAG+AGG | 0.619772 | 1.2:+75480568 | MS.gene34478:CDS |
TTTACTCGCATCATCGTGTG+AGG | 0.620272 | 1.2:-75482663 | None:intergenic |
ATCAAGGTTTGATCACACAA+TGG | 0.623420 | 1.2:-75479826 | None:intergenic |
CAGCAACTTAACATAGGAGA+GGG | 0.625229 | 1.2:+75480389 | MS.gene34478:CDS |
TCGCACTGCTACCCCATCTG+AGG | 0.626360 | 1.2:+75480044 | MS.gene34478:CDS |
TCACGAGATTGCTTCACCAA+CGG | 0.627672 | 1.2:+75476619 | MS.gene34478:CDS |
AAGTCAGCAGATGGTAGTGA+AGG | 0.628549 | 1.2:+75476732 | MS.gene34478:CDS |
AATGCTGTCACTACTTCAGG+AGG | 0.628596 | 1.2:-75481483 | None:intergenic |
TCTTTCAAAACAAACTGAGA+AGG | 0.632424 | 1.2:+75474874 | MS.gene34478:CDS |
TGCATGGGATAACTTTCTGA+GGG | 0.633306 | 1.2:+75481554 | MS.gene34478:CDS |
TGTTGGTGTGGAGATATCGA+CGG | 0.633351 | 1.2:+75474751 | MS.gene34478:CDS |
GGGGAGGGGAAGATGAGTGT+GGG | 0.633547 | 1.2:+75474627 | MS.gene34478:CDS |
GCTCGGCTAATGCAATGTGA+TGG | 0.638140 | 1.2:-75483326 | None:intergenic |
TAATACACTTCAACAACTGG+AGG | 0.638267 | 1.2:+75478766 | MS.gene34478:CDS |
TGAGCTTGGAAGTCAGCAGA+TGG | 0.640911 | 1.2:+75476723 | MS.gene34478:CDS |
GAGGCGGCGCATGATATGGG+GGG | 0.647351 | 1.2:+75474608 | MS.gene34478:CDS |
AACAGTGATGGATCTGCGAG+TGG | 0.647470 | 1.2:+75479615 | MS.gene34478:CDS |
TTTGTCAGGGTTGTATACGA+AGG | 0.649142 | 1.2:+75474577 | MS.gene34478:CDS |
GCTTCTGACAGTATTCAGCA+AGG | 0.649318 | 1.2:+75482383 | MS.gene34478:CDS |
ACTATTTCTCACCTCAGATG+GGG | 0.651307 | 1.2:-75480055 | None:intergenic |
CTCCACACGAGCATTTGAGG+AGG | 0.652649 | 1.2:-75476590 | None:intergenic |
CTTCTGACAGTATTCAGCAA+GGG | 0.653317 | 1.2:+75482384 | MS.gene34478:CDS |
GCTCTACCAAATTCTTGATG+CGG | 0.657214 | 1.2:-75483464 | None:intergenic |
AAATATGATCATTGCAACTG+AGG | 0.660596 | 1.2:+75480553 | MS.gene34478:CDS |
GTGATTCATAACTTGCAGCA+AGG | 0.661421 | 1.2:-75479640 | None:intergenic |
TCCACACGAGCATTTGAGGA+GGG | 0.663274 | 1.2:-75476589 | None:intergenic |
TCAGCAACTTAACATAGGAG+AGG | 0.666505 | 1.2:+75480388 | MS.gene34478:CDS |
CGGGCACCTGATATACAGCG+TGG | 0.670207 | 1.2:+75480003 | MS.gene34478:CDS |
GTCACTGGACCCAATATGGG+GGG | 0.673063 | 1.2:+75482004 | MS.gene34478:CDS |
GGGCACCTGATATACAGCGT+GGG | 0.676024 | 1.2:+75480004 | MS.gene34478:CDS |
ATGCTGTCACTACTTCAGGA+GGG | 0.678638 | 1.2:-75481482 | None:intergenic |
TGTCACTGGACCCAATATGG+GGG | 0.681502 | 1.2:+75482003 | MS.gene34478:CDS |
GTTGGTGAAGCAATCTCGTG+AGG | 0.685113 | 1.2:-75476617 | None:intergenic |
CGAGATTGCTTCACCAACGG+AGG | 0.686562 | 1.2:+75476622 | MS.gene34478:CDS |
AAACTTCTCTCAGAAACACC+AGG | 0.690326 | 1.2:-75482731 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 75474335 | 75483616 | 75474335 | ID=MS.gene34478 |
chr1.2 | mRNA | 75474335 | 75483616 | 75474335 | ID=MS.gene34478.t1;Parent=MS.gene34478 |
chr1.2 | exon | 75474335 | 75474895 | 75474335 | ID=MS.gene34478.t1.exon1;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75474335 | 75474895 | 75474335 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75476568 | 75476753 | 75476568 | ID=MS.gene34478.t1.exon2;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75476568 | 75476753 | 75476568 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75478626 | 75478787 | 75478626 | ID=MS.gene34478.t1.exon3;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75478626 | 75478787 | 75478626 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75479603 | 75479701 | 75479603 | ID=MS.gene34478.t1.exon4;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75479603 | 75479701 | 75479603 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75479817 | 75480065 | 75479817 | ID=MS.gene34478.t1.exon5;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75479817 | 75480065 | 75479817 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75480344 | 75480589 | 75480344 | ID=MS.gene34478.t1.exon6;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75480344 | 75480589 | 75480344 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75480707 | 75480838 | 75480707 | ID=MS.gene34478.t1.exon7;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75480707 | 75480838 | 75480707 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75481411 | 75481671 | 75481411 | ID=MS.gene34478.t1.exon8;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75481411 | 75481671 | 75481411 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75481743 | 75481814 | 75481743 | ID=MS.gene34478.t1.exon9;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75481743 | 75481814 | 75481743 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75481926 | 75482075 | 75481926 | ID=MS.gene34478.t1.exon10;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75481926 | 75482075 | 75481926 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75482314 | 75482781 | 75482314 | ID=MS.gene34478.t1.exon11;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75482314 | 75482781 | 75482314 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
chr1.2 | exon | 75483323 | 75483616 | 75483323 | ID=MS.gene34478.t1.exon12;Parent=MS.gene34478.t1 |
chr1.2 | CDS | 75483323 | 75483616 | 75483323 | ID=cds.MS.gene34478.t1;Parent=MS.gene34478.t1 |
Gene Sequence |
Protein sequence |