Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050408.t1 | XP_003625965.2 | 97.9 | 1042 | 19 | 1 | 84 | 1125 | 242 | 1280 | 0.00E+00 | 2019.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050408.t1 | O04716 | 69.4 | 953 | 282 | 2 | 124 | 1067 | 325 | 1276 | 0.0e+00 | 1333.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050408.t1 | G7KST2 | 97.9 | 1042 | 19 | 1 | 84 | 1125 | 242 | 1280 | 0.0e+00 | 2019.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050408 | MS.gene052665 | 0.824187 | 9.25E-54 | -1.69E-46 |
MS.gene050408 | MS.gene055861 | -0.811997 | 5.29E-51 | -1.69E-46 |
MS.gene050408 | MS.gene07047 | 0.981273 | 3.44E-152 | -1.69E-46 |
MS.gene050408 | MS.gene07050 | 0.922793 | 6.19E-89 | -1.69E-46 |
MS.gene050408 | MS.gene24268 | 0.805809 | 1.12E-49 | -1.69E-46 |
MS.gene050408 | MS.gene27918 | 0.817586 | 3.05E-52 | -1.69E-46 |
MS.gene050408 | MS.gene28806 | 0.844267 | 8.40E-59 | -1.69E-46 |
MS.gene050408 | MS.gene47875 | 0.819948 | 8.88E-53 | -1.69E-46 |
MS.gene050408 | MS.gene62682 | 0.829295 | 5.57E-55 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050408.t1 | MTR_7g109470 | 97.067 | 1125 | 26 | 3 | 1 | 1125 | 163 | 1280 | 0.0 | 2244 |
MS.gene050408.t1 | MTR_1g100683 | 28.497 | 958 | 547 | 28 | 182 | 1063 | 102 | 997 | 1.52e-77 | 277 |
MS.gene050408.t1 | MTR_1g100683 | 28.497 | 958 | 547 | 28 | 182 | 1063 | 102 | 997 | 1.52e-77 | 277 |
MS.gene050408.t1 | MTR_6g086270 | 44.109 | 331 | 169 | 7 | 775 | 1091 | 797 | 1125 | 1.19e-71 | 261 |
MS.gene050408.t1 | MTR_6g086270 | 35.471 | 499 | 280 | 15 | 137 | 628 | 279 | 742 | 2.61e-67 | 248 |
MS.gene050408.t1 | MTR_4g111945 | 28.642 | 611 | 360 | 20 | 485 | 1062 | 294 | 861 | 2.24e-50 | 194 |
MS.gene050408.t1 | MTR_5g093110 | 25.321 | 624 | 359 | 25 | 485 | 1054 | 184 | 754 | 5.65e-35 | 144 |
MS.gene050408.t1 | MTR_1g045670 | 33.929 | 224 | 135 | 3 | 865 | 1081 | 760 | 977 | 4.23e-26 | 117 |
MS.gene050408.t1 | MTR_5g068600 | 29.762 | 252 | 145 | 8 | 855 | 1103 | 318 | 540 | 1.25e-16 | 85.5 |
MS.gene050408.t1 | MTR_5g068600 | 29.762 | 252 | 145 | 8 | 855 | 1103 | 418 | 640 | 1.33e-16 | 85.5 |
MS.gene050408.t1 | MTR_4g088920 | 27.830 | 212 | 141 | 6 | 845 | 1054 | 403 | 604 | 3.67e-15 | 81.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050408.t1 | AT4G02070 | 65.655 | 1054 | 338 | 7 | 35 | 1067 | 226 | 1276 | 0.0 | 1400 |
MS.gene050408.t1 | AT4G02070 | 65.370 | 1054 | 338 | 8 | 35 | 1067 | 226 | 1273 | 0.0 | 1388 |
MS.gene050408.t1 | AT4G25540 | 28.437 | 953 | 573 | 27 | 176 | 1063 | 102 | 1010 | 6.16e-85 | 299 |
MS.gene050408.t1 | AT3G24495 | 43.988 | 341 | 169 | 7 | 775 | 1095 | 744 | 1082 | 2.36e-72 | 263 |
MS.gene050408.t1 | AT3G24495 | 33.333 | 486 | 293 | 10 | 133 | 614 | 221 | 679 | 4.77e-66 | 243 |
MS.gene050408.t1 | AT3G24495 | 33.333 | 486 | 293 | 10 | 133 | 614 | 221 | 679 | 5.95e-67 | 243 |
MS.gene050408.t1 | AT3G18524 | 31.909 | 351 | 222 | 6 | 742 | 1085 | 541 | 881 | 5.05e-44 | 174 |
MS.gene050408.t1 | AT4G17380 | 37.917 | 240 | 129 | 6 | 841 | 1071 | 525 | 753 | 2.48e-36 | 149 |
MS.gene050408.t1 | AT4G17380 | 46.405 | 153 | 76 | 3 | 841 | 993 | 525 | 671 | 9.60e-32 | 134 |
MS.gene050408.t1 | AT3G24320 | 39.583 | 192 | 110 | 3 | 865 | 1056 | 514 | 699 | 2.50e-28 | 123 |
MS.gene050408.t1 | AT3G24320 | 39.583 | 192 | 110 | 3 | 865 | 1056 | 759 | 944 | 3.51e-28 | 123 |
MS.gene050408.t1 | AT3G20475 | 30.640 | 297 | 188 | 9 | 794 | 1086 | 502 | 784 | 1.38e-27 | 121 |
MS.gene050408.t1 | AT3G20475 | 32.031 | 256 | 156 | 8 | 794 | 1045 | 502 | 743 | 2.40e-24 | 110 |
MS.gene050408.t1 | AT3G20475 | 31.452 | 248 | 152 | 8 | 794 | 1037 | 502 | 735 | 3.68e-22 | 103 |
MS.gene050408.t1 | AT5G54090 | 29.557 | 203 | 129 | 6 | 855 | 1054 | 424 | 615 | 1.21e-15 | 82.8 |
MS.gene050408.t1 | AT1G65070 | 25.084 | 299 | 209 | 7 | 760 | 1054 | 288 | 575 | 5.67e-13 | 73.9 |
MS.gene050408.t1 | AT1G65070 | 25.084 | 299 | 209 | 7 | 760 | 1054 | 288 | 575 | 6.06e-13 | 73.9 |
MS.gene050408.t1 | AT1G65070 | 25.084 | 299 | 209 | 7 | 760 | 1054 | 288 | 575 | 8.62e-13 | 73.6 |
MS.gene050408.t1 | AT1G65070 | 25.084 | 299 | 209 | 7 | 760 | 1054 | 288 | 575 | 3.53e-12 | 71.2 |
Find 241 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTTGCTTGGCTGTGATTT+TGG | 0.151082 | 7.1:+4764765 | MS.gene050408:CDS |
GCCTCCTTTATTCTTCTTAC+AGG | 0.162950 | 7.1:+4764706 | MS.gene050408:CDS |
GATCATCTGAAGAGAATTTA+TGG | 0.180715 | 7.1:+4761977 | MS.gene050408:CDS |
ATTGGCGCCTTTGAATAATT+TGG | 0.206877 | 7.1:+4759545 | MS.gene050408:CDS |
GCTCAGAAGTTTCACTTTCT+AGG | 0.220678 | 7.1:+4760081 | MS.gene050408:CDS |
AGAGTGGAAATGAAGTTAAT+AGG | 0.221825 | 7.1:+4759502 | MS.gene050408:CDS |
ACGAAGTCACCTTTCTTTAC+AGG | 0.240867 | 7.1:+4766232 | MS.gene050408:CDS |
TAATTCCAAATGTGGAATTC+TGG | 0.241545 | 7.1:+4761936 | MS.gene050408:CDS |
TCCTGAAGCTGCATATTTAA+TGG | 0.259152 | 7.1:+4761347 | MS.gene050408:CDS |
GGAAGCTGTTGCAGGTTTAA+AGG | 0.263336 | 7.1:+4762487 | MS.gene050408:CDS |
GACAAATTCCTCACAAAATC+TGG | 0.269200 | 7.1:-4760373 | None:intergenic |
AACCAATGTGTTACGGCGTT+TGG | 0.270484 | 7.1:+4762398 | MS.gene050408:CDS |
TATTATACGGCCGGAGTTAT+TGG | 0.272733 | 7.1:-4763584 | None:intergenic |
CAACTTTGATTGGAAGAGTT+TGG | 0.276106 | 7.1:-4766591 | None:intergenic |
TCAAAAGGCACATTAATAGA+TGG | 0.309098 | 7.1:+4761306 | MS.gene050408:CDS |
AGAAGAAGATATGGAATTAG+AGG | 0.319574 | 7.1:+4759371 | MS.gene050408:CDS |
GCCATTAAATATGCAGCTTC+AGG | 0.319588 | 7.1:-4761348 | None:intergenic |
TGGCACGGGTGCTCTCTTCT+AGG | 0.330298 | 7.1:+4763134 | MS.gene050408:CDS |
CAGATCTCTTATGTTGGTAT+TGG | 0.331238 | 7.1:+4763811 | MS.gene050408:intron |
CGCCGAAGCTCCATCTGTTC+AGG | 0.336095 | 7.1:-4761037 | None:intergenic |
CTCATCAACCCAACTTTGAT+TGG | 0.337658 | 7.1:-4766601 | None:intergenic |
AGCAGAAACGGAGAGTCTTC+AGG | 0.339726 | 7.1:+4762271 | MS.gene050408:CDS |
TGCTCTCTATTATTTGAAAC+AGG | 0.349767 | 7.1:+4762114 | MS.gene050408:CDS |
TTAAACCTGCAACAGCTTCC+TGG | 0.356135 | 7.1:-4762484 | None:intergenic |
CCTGCGTGGTCTTGAACTTA+TGG | 0.357425 | 7.1:+4763341 | MS.gene050408:CDS |
GTCTAGGACACCCTGTTCTT+AGG | 0.369436 | 7.1:+4764620 | MS.gene050408:CDS |
CTCCTTCATGAGGTATTATA+CGG | 0.373099 | 7.1:-4763597 | None:intergenic |
ATCTCCTGGACGCCTTCGTT+TGG | 0.373919 | 7.1:-4760317 | None:intergenic |
AGAATAAAGGAGGCCTGGTC+TGG | 0.374566 | 7.1:-4764697 | None:intergenic |
TCGTAATTCATTGGTGGCTC+TGG | 0.380170 | 7.1:+4765552 | MS.gene050408:CDS |
CCACCTATGGTTATGTCATT+AGG | 0.380822 | 7.1:-4764673 | None:intergenic |
GTTGACTTCCCACCCATGTT+AGG | 0.382734 | 7.1:-4764730 | None:intergenic |
ACCAATGTGTTACGGCGTTT+GGG | 0.383653 | 7.1:+4762399 | MS.gene050408:CDS |
GAGTGGAAATGAAGTTAATA+GGG | 0.383967 | 7.1:+4759503 | MS.gene050408:CDS |
ATTTCAAGGATGCCTTTGAT+TGG | 0.387401 | 7.1:+4763554 | MS.gene050408:CDS |
TACAGGGCTTCGTTAGGTAT+TGG | 0.390031 | 7.1:+4764096 | MS.gene050408:intron |
ACCTGACATGGAGCGGTTGC+TGG | 0.392250 | 7.1:+4763114 | MS.gene050408:CDS |
CAAACTCTTCCAATCAAAGT+TGG | 0.392529 | 7.1:+4766592 | MS.gene050408:CDS |
GAACGCCAGGAAGCTGTTGC+AGG | 0.394933 | 7.1:+4762479 | MS.gene050408:CDS |
GCTACAAGCAGAGTCATTCT+TGG | 0.395732 | 7.1:+4761444 | MS.gene050408:CDS |
AACATTAACACCGTAGCTCT+TGG | 0.401484 | 7.1:-4766274 | None:intergenic |
ATATCACGTGGAGTCAATAA+AGG | 0.405153 | 7.1:+4762457 | MS.gene050408:CDS |
AGAATATGATTCAGCTTGTA+AGG | 0.405787 | 7.1:+4763627 | MS.gene050408:CDS |
GCATCCCAGAATTCCACATT+TGG | 0.409996 | 7.1:-4761941 | None:intergenic |
AGGACCTGTAAGAAGAATAA+AGG | 0.411814 | 7.1:-4764710 | None:intergenic |
GCTCTGGATGAGCTTGGGCG+TGG | 0.413063 | 7.1:+4765568 | MS.gene050408:CDS |
GGGAGCTTCATTTGTACATA+AGG | 0.416496 | 7.1:-4764581 | None:intergenic |
GCCAGCAACCGCTCCATGTC+AGG | 0.418908 | 7.1:-4763115 | None:intergenic |
ACATTAACACCGTAGCTCTT+GGG | 0.420561 | 7.1:-4766273 | None:intergenic |
CATAAGGCCCCAACAAAACT+TGG | 0.422632 | 7.1:-4764565 | None:intergenic |
AGCTTGAATTGCAGTATATG+AGG | 0.422859 | 7.1:+4760686 | MS.gene050408:CDS |
TGATGATGAAGAAGAAGATA+TGG | 0.423869 | 7.1:+4759362 | MS.gene050408:CDS |
GTTAATGTTGCTCGGTTAGC+TGG | 0.424808 | 7.1:+4766288 | MS.gene050408:CDS |
CTTGAGATGATCTAACAAAC+TGG | 0.428020 | 7.1:-4763668 | None:intergenic |
CTTCATTTCCACTACCAACT+TGG | 0.428144 | 7.1:-4766203 | None:intergenic |
AATTCCAAATGTGGAATTCT+GGG | 0.429851 | 7.1:+4761937 | MS.gene050408:CDS |
AAGGTGTCACTCCTAAGAAC+AGG | 0.430782 | 7.1:-4764631 | None:intergenic |
ATACGTGGCCTCGAATTCTC+TGG | 0.432996 | 7.1:-4766541 | None:intergenic |
TCTTCTTCGCCAAGTTTGCT+TGG | 0.433375 | 7.1:+4764753 | MS.gene050408:CDS |
AAATCACAGCCAAGCAAACT+TGG | 0.436638 | 7.1:-4764762 | None:intergenic |
CAAATATCTCGAGATTCTCT+AGG | 0.439006 | 7.1:-4762243 | None:intergenic |
TTTCAAGGATGCCTTTGATT+GGG | 0.441751 | 7.1:+4763555 | MS.gene050408:CDS |
GGCATTTACAGGGCTTCGTT+AGG | 0.442920 | 7.1:+4764090 | MS.gene050408:intron |
CTGGGATGCTGATAGAACTT+TGG | 0.443715 | 7.1:+4761955 | MS.gene050408:CDS |
GCCAGCCATGATATTATCTC+TGG | 0.444404 | 7.1:-4765024 | None:intergenic |
CTCTGGATGAGCTTGGGCGT+GGG | 0.447621 | 7.1:+4765569 | MS.gene050408:CDS |
GAGGAATTTGTCAGGTGGCC+AGG | 0.448895 | 7.1:+4760384 | MS.gene050408:CDS |
GCAGGTTTCACAATTTCAAC+TGG | 0.449601 | 7.1:-4761845 | None:intergenic |
TTGGTGGCTCTGGATGAGCT+TGG | 0.451279 | 7.1:+4765562 | MS.gene050408:CDS |
TTCACTGAGAAATTCTTCTC+TGG | 0.453880 | 7.1:-4760838 | None:intergenic |
CAAAAGGCACATTAATAGAT+GGG | 0.457854 | 7.1:+4761307 | MS.gene050408:CDS |
CTACAAGCAGAGTCATTCTT+GGG | 0.468134 | 7.1:+4761445 | MS.gene050408:CDS |
CATGGATCTGAATCATTTCA+AGG | 0.469617 | 7.1:+4763540 | MS.gene050408:CDS |
TAAAGGAAAGAGTAGCAATA+AGG | 0.469819 | 7.1:+4759419 | MS.gene050408:CDS |
CTCAGTGAATGTAGAGAGAC+TGG | 0.470800 | 7.1:+4760852 | MS.gene050408:CDS |
AAACTCTTCCAATCAAAGTT+GGG | 0.471127 | 7.1:+4766593 | MS.gene050408:CDS |
ATGATTCGGAAGATGAAGAC+TGG | 0.471812 | 7.1:+4759307 | MS.gene050408:CDS |
TGGTGGCTCTGGATGAGCTT+GGG | 0.474116 | 7.1:+4765563 | MS.gene050408:CDS |
GCTCTATCTTGTCTGAGATC+AGG | 0.476786 | 7.1:+4761822 | MS.gene050408:CDS |
CATGGAGCGGTTGCTGGCAC+GGG | 0.477706 | 7.1:+4763120 | MS.gene050408:CDS |
ATCTAAGCAACTGCTCATCT+AGG | 0.478804 | 7.1:-4762141 | None:intergenic |
ATTGACTCCACGTGATATAA+CGG | 0.479752 | 7.1:-4762452 | None:intergenic |
CACCTGAACAGATGGAGCTT+CGG | 0.481803 | 7.1:+4761035 | MS.gene050408:CDS |
GATGGTGATTGAGGAGAATG+AGG | 0.484439 | 7.1:+4759224 | None:intergenic |
GGCCTCGAATTCTCTGGACT+TGG | 0.484449 | 7.1:-4766535 | None:intergenic |
ATCAGCCACTCGTAATTCAT+TGG | 0.488238 | 7.1:+4765543 | MS.gene050408:CDS |
CTCTCATGCTGAATCTGAAA+GGG | 0.489062 | 7.1:+4764151 | MS.gene050408:CDS |
ATTGCTAGTGATTACTATGA+AGG | 0.489400 | 7.1:+4764529 | MS.gene050408:CDS |
ACATGGAGCGGTTGCTGGCA+CGG | 0.489449 | 7.1:+4763119 | MS.gene050408:CDS |
TGTAGAGAGACTGGCTAGAA+AGG | 0.491181 | 7.1:+4760861 | MS.gene050408:CDS |
TAAAAGATGACTAAGCTGTC+TGG | 0.493182 | 7.1:-4763409 | None:intergenic |
GTGCGCTCTGACATTTCACT+TGG | 0.493379 | 7.1:-4761396 | None:intergenic |
TAAATATGCAGCTTCAGGAT+TGG | 0.495476 | 7.1:-4761343 | None:intergenic |
TAATAAAGTGGTTCTGTATG+AGG | 0.495859 | 7.1:+4763281 | MS.gene050408:CDS |
TTCAGATCCATGCTTACATC+AGG | 0.496298 | 7.1:-4763529 | None:intergenic |
GGCCTGGTCTGGACCACCTA+TGG | 0.496477 | 7.1:-4764686 | None:intergenic |
GAAGTTGTAGAGAGTGCTAA+AGG | 0.499551 | 7.1:+4759402 | MS.gene050408:CDS |
GCAGAAACGGAGAGTCTTCA+GGG | 0.500501 | 7.1:+4762272 | MS.gene050408:CDS |
GTTCTTAGGAGTGACACCTT+AGG | 0.502432 | 7.1:+4764634 | MS.gene050408:CDS |
ACCAGCTCCAGTAAAACATC+TGG | 0.503484 | 7.1:-4762046 | None:intergenic |
CAAGTTGGTAGTGGAAATGA+AGG | 0.504132 | 7.1:+4766204 | MS.gene050408:CDS |
GACTGAAACACCTGAACAGA+TGG | 0.505373 | 7.1:+4761027 | MS.gene050408:CDS |
TACTCAGTGCTGAAACAGAA+AGG | 0.506285 | 7.1:+4761873 | MS.gene050408:CDS |
TTCAGAAACTGCAACAATGC+TGG | 0.508469 | 7.1:+4765070 | MS.gene050408:CDS |
TCAGCACTGAGTAGTTTAGC+AGG | 0.508590 | 7.1:-4761863 | None:intergenic |
GACAATTCAAAACTTTCTGA+AGG | 0.508600 | 7.1:-4764969 | None:intergenic |
CGTGGGACCTCAACGTCTGA+TGG | 0.511144 | 7.1:+4765586 | MS.gene050408:CDS |
TGCCAAGTCCAGAGAATTCG+AGG | 0.511558 | 7.1:+4766533 | MS.gene050408:CDS |
TGGAAAGGACACATACCTAT+TGG | 0.515871 | 7.1:+4763831 | MS.gene050408:CDS |
TAAGAAGAATAAAGGAGGCC+TGG | 0.517562 | 7.1:-4764702 | None:intergenic |
TGGTAGTGGAAATGAAGGTT+TGG | 0.520746 | 7.1:+4766209 | MS.gene050408:CDS |
TCTTGCTTCAAAACCATACA+TGG | 0.521293 | 7.1:+4762204 | MS.gene050408:CDS |
AAGGAACAAAGGAAATTACT+TGG | 0.522279 | 7.1:+4763688 | MS.gene050408:CDS |
ATGGCATGCCAAGTTGGTAG+TGG | 0.522448 | 7.1:+4766195 | MS.gene050408:CDS |
AGCTGTTAAGCTCTCACCAT+TGG | 0.522564 | 7.1:+4759527 | MS.gene050408:CDS |
GCCAGAGATAATATCATGGC+TGG | 0.523474 | 7.1:+4765023 | MS.gene050408:CDS |
TGATGATGATAATGATGATT+CGG | 0.524108 | 7.1:+4759293 | MS.gene050408:CDS |
TCAATTAAACCAATGTGTTA+CGG | 0.526620 | 7.1:+4762391 | MS.gene050408:CDS |
GATGCCAAACGAAGGCGTCC+AGG | 0.527682 | 7.1:+4760313 | MS.gene050408:CDS |
GGCGCAGACAATGTTGCAAC+TGG | 0.527921 | 7.1:+4760027 | MS.gene050408:CDS |
TTTCACTTGGATTGTTCTCA+CGG | 0.528806 | 7.1:-4761383 | None:intergenic |
AAGCAGAGTCATTCTTGGGC+AGG | 0.530004 | 7.1:+4761449 | MS.gene050408:CDS |
TGTCTTCTAGGTTGTGAGAC+GGG | 0.530777 | 7.1:+4761266 | MS.gene050408:intron |
ACAGCATCAAGAACCATGTA+TGG | 0.531206 | 7.1:-4762217 | None:intergenic |
GGTTGATGAGATAATAGTCT+TGG | 0.531511 | 7.1:+4766614 | MS.gene050408:CDS |
CAGTTGGTGTCTGCAACTGC+TGG | 0.534677 | 7.1:+4764242 | MS.gene050408:CDS |
GAGCTTCGGCGCAAGGAGAA+CGG | 0.534768 | 7.1:+4761049 | MS.gene050408:CDS |
ATATTTGAGAATAGCAGAAA+CGG | 0.536056 | 7.1:+4762259 | MS.gene050408:CDS |
TGTTGCAGTTTCTGAAAGCT+CGG | 0.537660 | 7.1:-4765063 | None:intergenic |
ATATGCGCAGTGGTTTCAAA+AGG | 0.539354 | 7.1:+4761291 | MS.gene050408:CDS |
AAATTATTCAAAGGCGCCAA+TGG | 0.539998 | 7.1:-4759543 | None:intergenic |
TATCAGGAAGATGGTGATTG+AGG | 0.540522 | 7.1:+4759215 | None:intergenic |
GGCGCCTTTGAATAATTTGG+AGG | 0.541353 | 7.1:+4759548 | MS.gene050408:CDS |
TCTCTCATGCTGAATCTGAA+AGG | 0.542042 | 7.1:+4764150 | MS.gene050408:CDS |
AAGCTTCACTATAGATTGAT+CGG | 0.542729 | 7.1:-4766688 | None:intergenic |
AGCGGACAGCCTGTAAAGAA+AGG | 0.544754 | 7.1:-4766241 | None:intergenic |
CAAGGATGCCTTTGATTGGG+TGG | 0.545507 | 7.1:+4763558 | MS.gene050408:CDS |
TCTTCTTACAGGTCCTAACA+TGG | 0.545833 | 7.1:+4764717 | MS.gene050408:CDS |
TTTCTTTACAGGCTGTCCGC+TGG | 0.546981 | 7.1:+4766243 | MS.gene050408:CDS |
ATTTGTCGCAGAATATTCCT+CGG | 0.547040 | 7.1:+4763866 | MS.gene050408:CDS |
GGAGTCAATAAAGGAACGCC+AGG | 0.547592 | 7.1:+4762466 | MS.gene050408:CDS |
CTATGACAGATCTCTTATGT+TGG | 0.552864 | 7.1:+4763805 | MS.gene050408:intron |
TGATTCGGAAGATGAAGACT+GGG | 0.552892 | 7.1:+4759308 | MS.gene050408:CDS |
GTACGTAGCGTGCAGTGTCG+TGG | 0.553211 | 7.1:+4765761 | MS.gene050408:CDS |
TTTGAAATGGATGCACATGT+AGG | 0.554093 | 7.1:+4760655 | MS.gene050408:CDS |
CTCTTATGTTGGTATTGGAA+AGG | 0.556055 | 7.1:+4763816 | MS.gene050408:CDS |
GAGCACTAAAATCGTTATTG+TGG | 0.557499 | 7.1:-4762000 | None:intergenic |
CATTAACACCGTAGCTCTTG+GGG | 0.557755 | 7.1:-4766272 | None:intergenic |
ATTGGCTTCCACCCAATCAA+AGG | 0.558713 | 7.1:-4763566 | None:intergenic |
AGAGAATTCGAGGCCACGTA+TGG | 0.559797 | 7.1:+4766543 | MS.gene050408:CDS |
AGTGAAACTTCTGAGCTTCG+CGG | 0.561044 | 7.1:-4760074 | None:intergenic |
GCACAAGCTTGCTTGTCACT+CGG | 0.561258 | 7.1:+4763363 | MS.gene050408:CDS |
AACCATAGGTGGTCCAGACC+AGG | 0.561685 | 7.1:+4764684 | MS.gene050408:CDS |
TACAAAGGCACTCTTTCCTA+AGG | 0.561689 | 7.1:-4764650 | None:intergenic |
TTTGTCGCAGAATATTCCTC+GGG | 0.561787 | 7.1:+4763867 | MS.gene050408:CDS |
ACAGATGGAGCTTCGGCGCA+AGG | 0.563478 | 7.1:+4761042 | MS.gene050408:CDS |
AGCCACTCGTAATTCATTGG+TGG | 0.564226 | 7.1:+4765546 | MS.gene050408:CDS |
TTCATGAGGTATTATACGGC+CGG | 0.565363 | 7.1:-4763593 | None:intergenic |
TGGAAGGAATGCTAATAAAG+TGG | 0.565708 | 7.1:+4763269 | MS.gene050408:CDS |
GAATTAACTCATTCACTAGA+GGG | 0.566090 | 7.1:-4761919 | None:intergenic |
GCTCACATGGCATGCCAAGT+TGG | 0.566170 | 7.1:+4766189 | MS.gene050408:CDS |
TACATCTATGCTAAAAGTCT+AGG | 0.570534 | 7.1:+4764604 | MS.gene050408:CDS |
GGAATTAACTCATTCACTAG+AGG | 0.571162 | 7.1:-4761920 | None:intergenic |
GGAGAACGGCTCTAAAGATA+AGG | 0.572138 | 7.1:+4761063 | MS.gene050408:CDS |
GGTACTTGCCCCAAGAGCTA+CGG | 0.572527 | 7.1:+4766264 | MS.gene050408:CDS |
ACTCAGTGCTGAAACAGAAA+GGG | 0.573892 | 7.1:+4761874 | MS.gene050408:CDS |
TCCCAAACGCCGTAACACAT+TGG | 0.574302 | 7.1:-4762400 | None:intergenic |
AAAGGTCTGTCTCGCTCACA+TGG | 0.577448 | 7.1:+4766176 | MS.gene050408:intron |
ATGGTGATTGAGGAGAATGA+GGG | 0.579087 | 7.1:+4759225 | MS.gene050408:CDS |
AGCTTTCTGAAGCACAGAAG+TGG | 0.579708 | 7.1:-4766508 | None:intergenic |
GCTACGGTGTTAATGTTGCT+CGG | 0.580069 | 7.1:+4766280 | MS.gene050408:CDS |
GAATGAGTTAATTCCAAATG+TGG | 0.581557 | 7.1:+4761928 | MS.gene050408:CDS |
GCTTGAATTGCAGTATATGA+GGG | 0.582237 | 7.1:+4760687 | MS.gene050408:CDS |
CGTTCTGTATTTACCATACG+TGG | 0.582471 | 7.1:-4766556 | None:intergenic |
TTCTCTGGAAAACCACAATG+AGG | 0.585216 | 7.1:-4760823 | None:intergenic |
AGAAGTGCACTCTCAGCACT+TGG | 0.585933 | 7.1:+4762088 | MS.gene050408:CDS |
GCGCCTTTGAATAATTTGGA+GGG | 0.587149 | 7.1:+4759549 | MS.gene050408:CDS |
GGAAGAGACTGCTAAAGTCA+TGG | 0.587236 | 7.1:+4762420 | MS.gene050408:CDS |
ACAAAACTTGGTCTGCATGT+TGG | 0.587327 | 7.1:-4764553 | None:intergenic |
GTACCTAATGACATAACCAT+AGG | 0.587761 | 7.1:+4764670 | MS.gene050408:CDS |
ACAATTCAAAACTTTCTGAA+GGG | 0.588284 | 7.1:-4764968 | None:intergenic |
CATGAAAGCAGGGATGCTAG+TGG | 0.591004 | 7.1:+4763249 | MS.gene050408:intron |
TTACAGGTCCTAACATGGGT+GGG | 0.593036 | 7.1:+4764722 | MS.gene050408:CDS |
GCTTTCTGAAGCACAGAAGT+GGG | 0.593242 | 7.1:-4766507 | None:intergenic |
CATAAGTTCAAGACCACGCA+GGG | 0.593320 | 7.1:-4763340 | None:intergenic |
AGGTCTTCCTGATGTAAGCA+TGG | 0.593997 | 7.1:+4763522 | MS.gene050408:CDS |
GGCCGTATAATACCTCATGA+AGG | 0.595756 | 7.1:+4763595 | MS.gene050408:CDS |
GAAATGTCAGAGCGCACCTA+CGG | 0.597696 | 7.1:+4761402 | MS.gene050408:CDS |
TGCTGTATTGGAGAATGTTG+TGG | 0.597856 | 7.1:+4759338 | MS.gene050408:CDS |
AAATATCTCGAGATTCTCTA+GGG | 0.598045 | 7.1:-4762242 | None:intergenic |
TGTCTTGGTACAGAGATCGC+AGG | 0.600238 | 7.1:+4760290 | MS.gene050408:intron |
TCTTTGTCAACTCCTTCATG+AGG | 0.601102 | 7.1:-4763607 | None:intergenic |
GCAGTTAGAAAGACATCTGA+CGG | 0.602012 | 7.1:+4760006 | MS.gene050408:intron |
CAAAGTTACCTGACATGGAG+CGG | 0.602545 | 7.1:+4763107 | MS.gene050408:CDS |
CTCAGACAAGATAGAGCACA+AGG | 0.604443 | 7.1:-4761816 | None:intergenic |
AAAAGGCACATTAATAGATG+GGG | 0.608960 | 7.1:+4761308 | MS.gene050408:CDS |
AGATTATCTCAAAGATCCCA+AGG | 0.613826 | 7.1:+4765817 | MS.gene050408:CDS |
TCACCCTCCAAATTATTCAA+AGG | 0.615135 | 7.1:-4759552 | None:intergenic |
CTTACAGGTCCTAACATGGG+TGG | 0.616004 | 7.1:+4764721 | MS.gene050408:CDS |
TTTCGAAATTCTAGCGTGTG+AGG | 0.617291 | 7.1:-4763076 | None:intergenic |
GGTTATGTCATTAGGTACAA+AGG | 0.618898 | 7.1:-4764665 | None:intergenic |
AGTGCACTCTCAGCACTTGG+TGG | 0.620015 | 7.1:+4762091 | MS.gene050408:CDS |
GGCTTGTCCATCAGACGTTG+AGG | 0.620456 | 7.1:-4765593 | None:intergenic |
CAGTTTGTTAGATCATCTCA+AGG | 0.621088 | 7.1:+4763669 | MS.gene050408:CDS |
ACGCAAGAAAACTGCTAGCA+CGG | 0.621770 | 7.1:+4766718 | MS.gene050408:CDS |
CTTCTTACAGGTCCTAACAT+GGG | 0.624245 | 7.1:+4764718 | MS.gene050408:CDS |
TAGGGAGAGCAACCTCATTG+TGG | 0.625346 | 7.1:+4760811 | MS.gene050408:intron |
TAGATCATCTCAAGGAACAA+AGG | 0.627293 | 7.1:+4763677 | MS.gene050408:CDS |
ATTATCAAAGTTACCTGACA+TGG | 0.627362 | 7.1:+4763102 | MS.gene050408:CDS |
GGGTGCCAGAGATAATATCA+TGG | 0.627710 | 7.1:+4765019 | MS.gene050408:CDS |
TGCAAGACCGTTATATCACG+TGG | 0.628002 | 7.1:+4762445 | MS.gene050408:CDS |
GCGGAGCGCAAATCTTTCAG+AGG | 0.631888 | 7.1:-4760055 | None:intergenic |
AGACCACTGAAAACAGCACA+TGG | 0.633212 | 7.1:-4762184 | None:intergenic |
TCACACTCAGTGGAAGCAGT+TGG | 0.633973 | 7.1:+4764226 | MS.gene050408:CDS |
TGGGTGGAAGCCAATAACTC+CGG | 0.636891 | 7.1:+4763574 | MS.gene050408:CDS |
ATGTCTTCTAGGTTGTGAGA+CGG | 0.636937 | 7.1:+4761265 | MS.gene050408:intron |
GCTCTTGGGGCAAGTACCAG+CGG | 0.638844 | 7.1:-4766259 | None:intergenic |
GTCTTGGTACAGAGATCGCA+GGG | 0.639706 | 7.1:+4760291 | MS.gene050408:intron |
ACCTGTAAGAAGAATAAAGG+AGG | 0.640334 | 7.1:-4764707 | None:intergenic |
CCTAATGACATAACCATAGG+TGG | 0.642373 | 7.1:+4764673 | MS.gene050408:CDS |
GAGTTTATTTCAGCCCTGCG+TGG | 0.642478 | 7.1:+4763327 | MS.gene050408:CDS |
AAAGCAGGGATGCTAGTGGA+AGG | 0.642520 | 7.1:+4763253 | MS.gene050408:intron |
CCATAAGTTCAAGACCACGC+AGG | 0.655964 | 7.1:-4763341 | None:intergenic |
ATCGCAGGGATGCCAAACGA+AGG | 0.657353 | 7.1:+4760305 | MS.gene050408:CDS |
GGAGTTCAAGTCAAAACACA+TGG | 0.657430 | 7.1:+4760497 | MS.gene050408:CDS |
TTTGTGAGGAATTTGTCAGG+TGG | 0.659493 | 7.1:+4760379 | MS.gene050408:CDS |
GGGAGAAGAAAGTCCCAAAG+AGG | 0.662744 | 7.1:+4759245 | MS.gene050408:CDS |
TTTGTGAACATCACACTCAG+TGG | 0.665331 | 7.1:+4764216 | MS.gene050408:CDS |
AAATTCCTCACAAAATCTGG+AGG | 0.671639 | 7.1:-4760370 | None:intergenic |
AGCCACCAATGAATTACGAG+TGG | 0.674310 | 7.1:-4765548 | None:intergenic |
CACGTATGGTAAATACAGAA+CGG | 0.676522 | 7.1:+4766557 | MS.gene050408:CDS |
AGGTGTCACTCCTAAGAACA+GGG | 0.676676 | 7.1:-4764630 | None:intergenic |
GATTCGGAAGATGAAGACTG+GGG | 0.682741 | 7.1:+4759309 | MS.gene050408:CDS |
ATTCGGAAGATGAAGACTGG+GGG | 0.689165 | 7.1:+4759310 | MS.gene050408:CDS |
TTTGGTGAATGCAGAAACAA+TGG | 0.691100 | 7.1:+4760472 | MS.gene050408:intron |
GAGACGGGAAATATGCGCAG+TGG | 0.691857 | 7.1:+4761281 | MS.gene050408:CDS |
TGTTAATAATTTGAGCTGCG+AGG | 0.692395 | 7.1:+4766656 | MS.gene050408:CDS |
GAACGTCTCTCATAATCCCG+AGG | 0.697284 | 7.1:-4763883 | None:intergenic |
GGTGAATGCAGAAACAATGG+TGG | 0.700703 | 7.1:+4760475 | MS.gene050408:intron |
ATCAACTACACAAACACCGT+AGG | 0.705252 | 7.1:-4761418 | None:intergenic |
GTGAATGCAGAAACAATGGT+GGG | 0.716883 | 7.1:+4760476 | MS.gene050408:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 4759225 | 4766746 | 4759225 | ID=MS.gene050408 |
chr7.1 | mRNA | 4759225 | 4766746 | 4759225 | ID=MS.gene050408.t1;Parent=MS.gene050408 |
chr7.1 | exon | 4759225 | 4759570 | 4759225 | ID=MS.gene050408.t1.exon1;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4759225 | 4759570 | 4759225 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4760010 | 4760106 | 4760010 | ID=MS.gene050408.t1.exon2;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4760010 | 4760106 | 4760010 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4760303 | 4760405 | 4760303 | ID=MS.gene050408.t1.exon3;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4760303 | 4760405 | 4760303 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4760486 | 4760539 | 4760486 | ID=MS.gene050408.t1.exon4;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4760486 | 4760539 | 4760486 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4760634 | 4760708 | 4760634 | ID=MS.gene050408.t1.exon5;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4760634 | 4760708 | 4760634 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4760814 | 4760882 | 4760814 | ID=MS.gene050408.t1.exon6;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4760814 | 4760882 | 4760814 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4761001 | 4761084 | 4761001 | ID=MS.gene050408.t1.exon7;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4761001 | 4761084 | 4761001 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4761276 | 4761470 | 4761276 | ID=MS.gene050408.t1.exon8;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4761276 | 4761470 | 4761276 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4761791 | 4762293 | 4761791 | ID=MS.gene050408.t1.exon9;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4761791 | 4762293 | 4761791 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4762379 | 4762508 | 4762379 | ID=MS.gene050408.t1.exon10;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4762379 | 4762508 | 4762379 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4763064 | 4763155 | 4763064 | ID=MS.gene050408.t1.exon11;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4763064 | 4763155 | 4763064 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4763260 | 4763438 | 4763260 | ID=MS.gene050408.t1.exon12;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4763260 | 4763438 | 4763260 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4763518 | 4763720 | 4763518 | ID=MS.gene050408.t1.exon13;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4763518 | 4763720 | 4763518 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4763814 | 4763915 | 4763814 | ID=MS.gene050408.t1.exon14;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4763814 | 4763915 | 4763814 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4764101 | 4764263 | 4764101 | ID=MS.gene050408.t1.exon15;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4764101 | 4764263 | 4764101 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4764503 | 4764792 | 4764503 | ID=MS.gene050408.t1.exon16;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4764503 | 4764792 | 4764503 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4764954 | 4765091 | 4764954 | ID=MS.gene050408.t1.exon17;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4764954 | 4765091 | 4764954 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4765541 | 4765620 | 4765541 | ID=MS.gene050408.t1.exon18;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4765541 | 4765620 | 4765541 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4765739 | 4765838 | 4765739 | ID=MS.gene050408.t1.exon19;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4765739 | 4765838 | 4765739 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4766180 | 4766309 | 4766180 | ID=MS.gene050408.t1.exon20;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4766180 | 4766309 | 4766180 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
chr7.1 | exon | 4766502 | 4766746 | 4766502 | ID=MS.gene050408.t1.exon21;Parent=MS.gene050408.t1 |
chr7.1 | CDS | 4766502 | 4766746 | 4766502 | ID=cds.MS.gene050408.t1;Parent=MS.gene050408.t1 |
Gene Sequence |
Protein sequence |