AlfalfaGEDB | MS.gene35870

M. sativa cultivar XinJiangDaYe / MS.gene35870

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
PFAM: PF00787.27 PF09325.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35870.t1	XP_003615868.1	97.7	564	13	0	1	564	1	564	1.80E-300	1041.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35870.t1	B9DFS6	68.0	587	149	11	1	564	1	571	1.2e-199	697.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35870.t1	G7JZQ0	97.7	564	13	0	1	564	1	564	1.3e-300	1041.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05016	MS.gene35870	0.808846	2.53E-50	-1.69E-46
MS.gene050384	MS.gene35870	0.812369	4.39E-51	-1.69E-46
MS.gene050386	MS.gene35870	0.816977	4.19E-52	-1.69E-46
MS.gene050689	MS.gene35870	0.827196	1.79E-54	-1.69E-46
MS.gene050807	MS.gene35870	0.815231	1.03E-51	-1.69E-46
MS.gene051328	MS.gene35870	0.806852	6.73E-50	-1.69E-46
MS.gene051577	MS.gene35870	0.825514	4.50E-54	-1.69E-46
MS.gene052307	MS.gene35870	0.813083	3.06E-51	-1.69E-46
MS.gene052397	MS.gene35870	0.816962	4.22E-52	-1.69E-46
MS.gene052516	MS.gene35870	0.83151	1.60E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35870.t1	MTR_5g073280	97.695	564	13	0	1	564	1	564	0.0	1130
MS.gene35870.t1	MTR_5g083370	62.271	546	161	8	21	564	13	515	0.0	651
MS.gene35870.t1	MTR_1g059650	25.714	420	253	11	135	550	27	391	2.32e-28	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35870.t1	AT5G07120	67.577	586	153	10	1	564	1	571	0.0	751
MS.gene35870.t1	AT5G07120	67.577	586	153	10	1	564	1	571	0.0	751
MS.gene35870.t1	AT5G58440	66.780	590	162	10	1	563	1	583	0.0	735
MS.gene35870.t1	AT5G07120	67.260	562	147	10	1	540	1	547	0.0	712
MS.gene35870.t1	AT5G06140	25.768	423	249	9	135	550	25	389	4.68e-31	125

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Find 129 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGATCGGAACCCAC+CGG	0.622040	5.1:-56446708	None:intergenic
AAAGTTGTTGAAGACACAAG+TGG	0.605480	5.1:+56451826	MS.gene35870:CDS
AAATCCCTCCCACCTTTCGC+CGG	0.548404	5.1:-56447383	None:intergenic
AAGCTGCCGAAGCAGTTGAT+GGG	0.478618	5.1:+56447326	MS.gene35870:CDS
AAGCTGTTTCGGAATCTCAG+AGG	0.673178	5.1:+56448048	MS.gene35870:CDS
AAGGCCGGATAAGAGTATTG+TGG	0.649282	5.1:+56447112	MS.gene35870:CDS
AAGGCTTGATAGAGAGAGGC+AGG	0.522653	5.1:+56451530	MS.gene35870:CDS
AAGGTGGGAGGGATTTGTTG+AGG	0.594759	5.1:+56447390	MS.gene35870:CDS
AATCAATGGTGCTTCTCAGC+AGG	0.506291	5.1:+56447532	MS.gene35870:CDS
AATTCGAATTCGATTGTGCC+TGG	0.532154	5.1:+56446939	MS.gene35870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTTGGTCATCTGTAA+AGG	+	chr5.1:56450260-56450279	MS.gene35870:intron	30.0%
ACAATAGAAGTGAACTTGAA+AGG	+	chr5.1:56451511-56451530	MS.gene35870:CDS	30.0%
AGAAAACATTTCATCTGCTT+GGG	+	chr5.1:56449393-56449412	MS.gene35870:intron	30.0%
AGTTTCTTGCAAAGAAAGAA+AGG	+	chr5.1:56447489-56447508	MS.gene35870:CDS	30.0%
ATTAGATTAGGTTCCTATAG+TGG	+	chr5.1:56449429-56449448	MS.gene35870:intron	30.0%
CAAATATATGTACCATAGCT+TGG	+	chr5.1:56448222-56448241	MS.gene35870:intron	30.0%
GAAAGGATTTGTAGTTAATC+AGG	+	chr5.1:56451572-56451591	MS.gene35870:CDS	30.0%
GAACTTGAACAACAAATCAA+TGG	+	chr5.1:56447518-56447537	MS.gene35870:CDS	30.0%
GACACAAAATACAACTTTGA+TGG	-	chr5.1:56448755-56448774	None:intergenic	30.0%
GACTTCTTAAACATGTTGAA+AGG	+	chr5.1:56451555-56451574	MS.gene35870:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	56446495	56451866	56446495	ID=MS.gene35870
chr5.1	mRNA	56446495	56451866	56446495	ID=MS.gene35870.t1;Parent=MS.gene35870
chr5.1	exon	56446495	56447553	56446495	ID=MS.gene35870.t1.exon1;Parent=MS.gene35870.t1
chr5.1	CDS	56446495	56447553	56446495	ID=cds.MS.gene35870.t1;Parent=MS.gene35870.t1
chr5.1	exon	56447954	56448163	56447954	ID=MS.gene35870.t1.exon2;Parent=MS.gene35870.t1
chr5.1	CDS	56447954	56448163	56447954	ID=cds.MS.gene35870.t1;Parent=MS.gene35870.t1
chr5.1	exon	56448341	56448601	56448341	ID=MS.gene35870.t1.exon3;Parent=MS.gene35870.t1
chr5.1	CDS	56448341	56448601	56448341	ID=cds.MS.gene35870.t1;Parent=MS.gene35870.t1
chr5.1	exon	56451507	56451593	56451507	ID=MS.gene35870.t1.exon4;Parent=MS.gene35870.t1
chr5.1	CDS	56451507	56451593	56451507	ID=cds.MS.gene35870.t1;Parent=MS.gene35870.t1
chr5.1	exon	56451790	56451866	56451790	ID=MS.gene35870.t1.exon5;Parent=MS.gene35870.t1
chr5.1	CDS	56451790	56451866	56451790	ID=cds.MS.gene35870.t1;Parent=MS.gene35870.t1

Gene Sequence

>MS.gene35870

ATGATGGACTCCGAAAATAACAACACCACAGAGGAACATTTTCACCCTCTTTCAGAAACAAACGATGAATTAGAAAATCTCATTCTACACGAAAAGAACGAAAACGATTCGTTAACGAGTAAATCATACTCTAACTACCGGAGCGTGATGTCCACGCTCTCTGATTCTCACAATTCACAAAACCACCCTCTCTCATCGCCGAGCTTCGTTTCACCGGTGGGTTCCGATCCACTTTTATCTCCGCCGCAGCATCACCGCGAATTTCAAAACCCTAATTCACCTAACGCAGACGCAATTTTCACTTCCTTCGACGGTGAATCATCTTCCAATGGTGTTAATACTCCGACACGAAGTTTCTCCGATGGAGGAGTTTTTTCGAGATCGGAGTCTTTGAATTCGGAGTATTTGAGAATTACGGTTTCGAATCCGGTTAAGGAGCAAGAGAATTCGAATTCGATTGTGCCTGGTAGTAATAGTTATGTTACGTATTTGATTACGACGAGGACGAATTTACCGGATTTTGGAGGGAACGAATTCGGTGTTCGGAGAAGGTTTAAAGATGTGGTTACGCTTTCTGATCGGTTATCGGAGGCGTATCGCGGGTTTTTTATACCGCCAAGGCCGGATAAGAGTATTGTGGAGAGTCAGGTGATGCAAAAGCAGGAGTTTGTTGAGCAGAGGAGAGTGGCATTGGAGAAATATTTGAGGAGATTGGCGGATCATCCGATGATTCGGAAGAGTGATGAGTTTAGAGTGTTTTTGCAGGTTCAAGGGAAGCTTCCGTTGGTGGGTTCGACGGATGTGGCTTCGAGGGTTTTGGATGGCGCGGTGAAGCTGCCGAAGCAGTTGATGGGGGAGAGTGTTATTGCTCCTAGTGAGGTTGTGCAACCGGCGAAAGGTGGGAGGGATTTGTTGAGGTTGTTTAAGGAGTTGAAGCAGTCTATGGCGAATGATTGGGGTGGTTCTAAGCCGCTTGTTGTCGAGGAAGATAAGGAGTTTCTTGCAAAGAAAGAAAGGGTTCATGAACTTGAACAACAAATCAATGGTGCTTCTCAGCAGGTGTAATTTTCACTGTCATTTTCAATTTCAGCTTATTAGAGTGACTATGTTTATACTTCTATGAGTCTGTTTGGATTGACTTATTTGAACTGAACCACTGGCATTAGCACCTGCGAGATTGTTTGGGAGAGTTCATAGAAACAACTTATGACATGTCCATAAACTGTTTTTAGCTTATTTTCATAAGCTCTGTAGGTTTAGGACAACTTATGTAAACAGCTCACATGAAAACAATTTGACGTCATTTTATATTTTGTTACAGAATTAGCTTATACATAAGCACTTATGTTTGTCCATGTGTTTGATAGCTTGTCACTTAGATTATTTTATTGATGTTATGAGGATGTGGTTAAGTTTGTACTTGTTGTAGAGTTTCTCATCGCGAGACAATTTTGTGCAGGCCGAATCACTTGTTAAAGCACAGCAAGATATGGGAGAGACAATGGGTGAATTAGGGTTGGCGTTTATTAAATTAACAAAATTTGAGAATGAAGAAGCTGTTTCGGAATCTCAGAGGGTACGAGCTACTGACATGAAAGGTGTAGCAACAGCTGCTGTGAAAGCTAGTAGATTATTTCGAGAATTAAATTCTCAGACCGTGAAGCATTTGGTATATAATTTTTCAATTATACATTTGTTCTTGTTGTTTTCTACTTAGAAAATTCTTTCAAATATATGTACCATAGCTTGGCATATTCTTACAAAGGCATTGCACTTTCCTTAATAATAACGGGCAATCCACTAAATAGGTTTAATTGTTGATGATTTTCCATTTTATGCATAGCAGGATACACTTCACGAATATCTTGGATTAATGTTGTCTGTTCATAGTGCATTCACTGATCGCACAAGTGCACTATTGACAGTACAAACTCTTCTATCAGAACTTTCTTCCTTGCAATCAAGAGCAGAAAAACTTGAAGCGGCTTCATCTAAAATATTTGGGGGTGACAAATCAAGGACTCGGAAGTTAGAGGAGCTACAGGATACCATAAGAGCCACTGAAGATGCCAAAAATGTTGCAATCAGAGAATATGAGCGGATCAAGGTAGAGGTTTAATTGTTTTTTTTGATTTGGTTCTTAAGCTAGATACGTTTTCTTCATATAACATTACACTTCCTGAATAGTTTGCGATTTAAAATGGCATATGTTTCAATCTTCTAAAATTCAGTTGATTACGTTTCTTGTTCCTGAGATCCATCAAAGTTGTATTTTGTGTCCTATACTCCCATGATTGGTCATTTGTTATCCTTTACAAATATGATTGCTATTAATAAAAAAATATTTTTCAATTGTTACGAAGTAGAGATACAAATCTTCTAAAAAAATTTGTATTTTGTAGACAAAAGTGTTTGTGTAAGTTTGTAGATCGAACTCCTGCTATATGCATCTACATTGAAAAATGTTTCAAGAGTGTTAAGATGTTAGAATTGTTAGGGTATTATTAGTCTTATTGTTTGTGGGCTTGGACTTGTACTAGCAGTATTGTCACTTGACCTAATTTTTCATGTAAATTTAAGTATTTGGTTTGGGTTAGAAGTTATAACATATCTCATCTATTTTAATGATATTTTTGGATTACTATTATTGACTAACCTTTTCTCTTTTCTTCCCTGACCCAAAACTTGAATTCTTAACTTGGTATCATTTACCAGGGTCTCCTTTCTCTTTTTTGAGTTCATTACATTGATCACATTCTCTCGTCTGTTCCTAATTCCTATATTATTCTCTCCGCTATTCATGTATTATTCTCTCCTCTGTTGATTGCATGATAACATAAAGTTTGGGAATCAGTTCAGAGGTCATGGCCACCTTTGAAGTGAAAGGTTGAAGACTACAGAAAACATTTCATCTGCTTGGGATGTGTGTGGAGTATTAGATTAGGTTCCTATAGTGGTATATTATTTTTTTGTTTGAAAACTCGGTGTCCAGCCCAAGGACCGACTAATCTGAGGAGTCCAATTCCACCGTCCACTTGCGGAGGTCCCATTTAAAGCATAGCTCTATATGGATTTAGCCCACTGAAATTGGCACCAGGGGGATCAAACGCGAGACCTTGAGATGAGCACACTCCAAGGTCCCAAACCAAGACCTTTAGGCCAACCCTAATGGGTTCCTATGGTTTTATCTGTCTCATGTTTGCAGGTTTATACTTGTATCAGCAAGCTTCCGTATTGTATACTACAGTTATTAGGTTATTGGTCATTTTGTTAGTAAGCTTTGGCTTGTAGTAGTACTGTAAGTTGTAGCGTTGATACGTGACCTAATTACTACTCACTAGTATAAATTGGAGTTTTAGGTTTTGGGATTTAATTCATTCAATGTGCTGAATTTATAGGGTCCAGACCTTTTGGTGTTGAGGGAGGACAAAATAAATTGATTTCTCTCCGTTATATAGTTCGTTCATCATCTTAAATTGATTTCCCTCCCTTTTTGGCCAAGGGCCTTCTCTCTCTCTCTCTCTCTTTTTTGTTTAGATGACTTTGTTCCAACTTGGGATTTTCTCTAGTTGATAACTGAATTACTATTATGCCTCTGCCTAGCTTGTTTGGACGCTGTTCTGTTATTTTTATTCTTAGATCTTCTCCTTACTGCATCTTTGCACGACCTGTTTGGATTTGAAATTTGAACAACGTTGCTACTTGAAGACTGTGGACTGTGGAGTAATTTTATATGGTCTATTTTGTCAAGGATATGAAAATATGAAAACTTTGGTCATCTGTAAAGGACCTTACTCAGTGTTCTGGTTATTTGATTAGAGGTGGGTTGTATGATAACTTAAAGTCAAAGGCTCCATAAACCATTTCATCTACTCGTGACGTGTGTGGATGAGATAGAACCCAAGATTTGTGGTTCAGGGGGAGTACAAGGTTCCAAAGGTCTTTGGCTAGAAAGGCTGGTGTTATCTGCTCATGTTTGCTGGTTTATATTTGTAACAACTAAAGCTTACAGGGGAGGCTTGTATATTACAGTTATTAGGTTGTTAGGTACTTGAACTAATTACTAGTTAGGTTCTAGATTTAGGGACTTAATTCATTCAATGTGTTGAAGTTATAGCGTTGAGACGTTTAGGTATAGAGGCAGGACAAAATAATAAATTTTTGGATAAGTTACATTGATATTAATGTAAATGAGATGGTGGATGTTATCTTAAAAGACAAAGCACAAATCCTTATAGAATACTTGAGTCGTAATCTTTATTAAATAAAGCATTATATACTCGAAAATAGTGAAACTTATCCTTAGAGATAATCTAAGATACTTTAAATTATTCTAAGATACAACCAAAATATTAAAGATGGATGATATGTTCTGACATCATCTATGAATTATATTACGAGTCTCTTATAGTTAGCTGCTTTCCCCTCTTTTCCTGATTCTCTTACATTAAAATTTAAAACTGAAATTCTTCACTCTAAGAATATGTTGCTCTATATATTTATTTGTAAAATCCCATCTGGTTAGTCGAAAATCTTCAATTAGGAAATCCTACTATTGTGAAACATTATCATAAGCTATAGCAAATACTGTATTCAACAAACTGGCTATGTAATATGATTTCAGTGGGACCTAGTGTTCTGTCTGCTGCATCGCTTCGCATTATATATTAATTTTATGTACAGAAGACTACATGCAAAATGAATATGCACTTCTTGTCTTCTGTTCGGTCAGGAACCTACTTTTAATGGATGATGTTTTATCTCTCTTTTTGTTTTACTTATTCATGGAAAAACATCTTTTAGTTTAGTCTTTCATGCATTCTGGTTTGGGTCTTCCAGACTTCATCATCTTATAATTATTATGTTTTAAAATGTTATACCTGGCATTTCTGGTAGATGTTTGGTTATTAGATTTTGTTTTTTTCAATTTCTTTTGTGTTATATTTAATTGTTTTCCTCTTGTCTATTTCCTCTGTTGCTTTGTTTAATGAATGATGATGATGCCAATGCAGGAAAACAATAGAAGTGAACTTGAAAGGCTTGATAGAGAGAGGCAGGCTGACTTCTTAAACATGTTGAAAGGATTTGTAGTTAATCAGGTATGATTTAATATTTGTTCGTTTTATGTTCCTTCTTGAATGATCTGTGTTCATCGGTGTGTAAGCAGGTCTAATCTTATGGAAACAGAAAGCTTTATATTTCATTTAATTTTTATTAATTTGTCGCTGTGCTGCTAGTTTGTTGATGTTATTTTTTCTTAGTTTCATTCATCATCTGATTAACTTAAGTTAATAGGTGGGATATGCTGAGAAAATAGCTAATGTCTGGACTAAAGTTGTTGAAGACACAAGTGGATATGCAGAAGAAAGCAC

Protein sequence

>MS.gene35870.t1

MMDSENNNTTEEHFHPLSETNDELENLILHEKNENDSLTSKSYSNYRSVMSTLSDSHNSQNHPLSSPSFVSPVGSDPLLSPPQHHREFQNPNSPNADAIFTSFDGESSSNGVNTPTRSFSDGGVFSRSESLNSEYLRITVSNPVKEQENSNSIVPGSNSYVTYLITTRTNLPDFGGNEFGVRRRFKDVVTLSDRLSEAYRGFFIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLADHPMIRKSDEFRVFLQVQGKLPLVGSTDVASRVLDGAVKLPKQLMGESVIAPSEVVQPAKGGRDLLRLFKELKQSMANDWGGSKPLVVEEDKEFLAKKERVHELEQQINGASQQAESLVKAQQDMGETMGELGLAFIKLTKFENEEAVSESQRVRATDMKGVATAAVKASRLFRELNSQTVKHLDTLHEYLGLMLSVHSAFTDRTSALLTVQTLLSELSSLQSRAEKLEAASSKIFGGDKSRTRKLEELQDTIRATEDAKNVAIREYERIKENNRSELERLDRERQADFLNMLKGFVVNQVGYAEKIANVWTKVVEDTSGYAEES