AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35924


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35924.t1 MTR_2g088190 95.129 349 17 0 1 349 1 349 0.0 677
MS.gene35924.t1 MTR_2g088220 86.571 350 46 1 1 349 1 350 0.0 597
MS.gene35924.t1 MTR_2g088200 84.286 350 54 1 1 349 1 350 0.0 586
MS.gene35924.t1 MTR_8g010030 39.766 342 201 4 6 347 5 341 2.65e-80 249
MS.gene35924.t1 MTR_7g406860 39.067 343 204 4 5 347 6 343 3.62e-80 248
MS.gene35924.t1 MTR_8g009820 42.857 350 180 9 5 347 63 399 8.38e-77 241
MS.gene35924.t1 MTR_8g009980 40.751 346 194 7 5 347 4 341 1.16e-75 237
MS.gene35924.t1 MTR_8g010020 45.185 270 140 4 80 347 46 309 3.64e-73 229
MS.gene35924.t1 MTR_8g009830 40.173 346 194 8 5 347 4 339 3.89e-72 228
MS.gene35924.t1 MTR_8g009840 40.816 343 186 10 5 342 4 334 2.53e-69 226
MS.gene35924.t1 MTR_0011s0280 34.582 347 213 8 5 345 3 341 1.05e-64 209
MS.gene35924.t1 MTR_8g010000 36.888 347 181 8 5 347 4 316 1.14e-62 202
MS.gene35924.t1 MTR_4g082970 37.216 352 202 9 3 347 8 347 6.23e-62 202
MS.gene35924.t1 MTR_8g007325 41.150 226 115 8 5 223 4 218 1.17e-37 135
MS.gene35924.t1 MTR_5g095030 39.370 127 75 1 221 347 11 135 1.05e-25 100
MS.gene35924.t1 MTR_4g086410 30.645 248 156 6 106 347 385 622 1.96e-24 104
MS.gene35924.t1 MTR_4g086400 30.242 248 157 6 106 347 245 482 1.17e-23 102
MS.gene35924.t1 MTR_4g086400 30.242 248 157 6 106 347 385 622 2.04e-23 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35924.t1 AT5G16970 41.176 340 176 9 19 347 16 342 1.35e-76 239
MS.gene35924.t1 AT1G65560 40.688 349 195 7 4 347 6 347 3.89e-76 238
MS.gene35924.t1 AT3G03080 40.625 352 187 10 5 347 9 347 4.50e-73 230
MS.gene35924.t1 AT5G16990 40.299 335 185 8 19 347 15 340 5.90e-73 230
MS.gene35924.t1 AT1G26320 40.000 345 190 9 5 342 9 343 8.50e-72 227
MS.gene35924.t1 AT5G17000 40.785 331 174 8 26 347 25 342 2.01e-71 226
MS.gene35924.t1 AT5G37940 39.053 338 187 8 19 347 23 350 3.62e-70 223
MS.gene35924.t1 AT5G16960 39.826 344 186 8 11 347 14 343 1.71e-69 221
MS.gene35924.t1 AT5G16960 39.826 344 186 8 11 347 14 343 1.71e-69 221
MS.gene35924.t1 AT5G37980 39.571 326 181 7 31 347 32 350 3.18e-69 221
MS.gene35924.t1 AT5G38000 39.264 326 182 7 31 347 32 350 4.39e-69 220
MS.gene35924.t1 AT1G26320 39.420 345 187 10 5 342 9 338 2.66e-68 218
MS.gene35924.t1 AT1G65560 44.118 272 148 3 78 347 2 271 2.84e-67 213
MS.gene35924.t1 AT5G38000 39.172 314 175 7 31 335 32 338 3.97e-65 210
MS.gene35924.t1 AT3G59845 37.921 356 201 9 1 347 1 345 9.94e-64 206
MS.gene35924.t1 AT5G16980 44.954 218 118 1 130 347 21 236 3.15e-62 199
MS.gene35924.t1 AT5G16980 44.954 218 118 1 130 347 21 236 3.15e-62 199
MS.gene35924.t1 AT5G16980 44.954 218 118 1 130 347 87 302 1.50e-61 199
MS.gene35924.t1 AT5G38000 37.117 326 170 8 31 347 32 331 1.69e-58 192
MS.gene35924.t1 AT3G59845 43.172 227 127 1 121 347 19 243 3.44e-56 183
MS.gene35924.t1 AT5G17000 40.865 208 103 7 26 224 25 221 8.45e-36 130
MS.gene35924.t1 AT1G49670 30.242 248 157 6 106 347 381 618 4.09e-22 97.8
MS.gene35924.t1 AT1G49670 28.897 263 164 6 106 347 381 641 7.60e-19 88.2
MS.gene35924.t1 AT4G21580 28.295 258 170 8 94 346 44 291 2.29e-13 70.1
MS.gene35924.t1 AT4G21580 28.295 258 170 8 94 346 77 324 2.75e-13 70.1

Find 81 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTATCTCGGTTCTTT+AGG 0.209039 2.1:+13589173 MS.gene35924:CDS
AAGCTCATCAAAGAGAATTT+TGG 0.226510 2.1:+13590414 MS.gene35924:CDS
GTTGATATTGTGGAATAAAA+AGG 0.237797 2.1:-13588753 None:intergenic
AAATCATATTTGCATCGTTT+TGG 0.310312 2.1:+13591554 MS.gene35924:CDS
AACACATTGGATCCTGGCTT+TGG 0.311058 2.1:-13589669 None:intergenic
CGAATTGGACATGGGAGATT+TGG 0.315863 2.1:+13588540 None:intergenic
GTGTTCATATCTGCTGCTTC+TGG 0.322794 2.1:+13589687 MS.gene35924:CDS
CTCACTGTATTTACTATCCT+TGG 0.324250 2.1:-13589048 None:intergenic
GTGATTGTTCCGCGAAGATA+TGG 0.324490 2.1:-13588715 None:intergenic
ATTTCTAATGCCTTCTCTTT+CGG 0.329200 2.1:-13591483 None:intergenic
TCAACGGCTAGATGGTCTTC+AGG 0.338735 2.1:-13588670 None:intergenic
GGTGAGGATGGAAGGCTATA+TGG 0.372074 2.1:+13591529 MS.gene35924:CDS
TCCACAATATCAACTTAATC+AGG 0.375511 2.1:+13588762 MS.gene35924:CDS
TCCGAGGTTGGAACACCTTC+AGG 0.383872 2.1:-13588598 None:intergenic
TTACAACATTTGCAGTTGTA+AGG 0.385135 2.1:+13589015 MS.gene35924:CDS
AAAAGTTGTTGTTCAAGTTA+AGG 0.388021 2.1:+13591703 MS.gene35924:CDS
ACACATTGGATCCTGGCTTT+GGG 0.390179 2.1:-13589668 None:intergenic
GATGATATCTCAATATAATA+AGG 0.417882 2.1:+13591323 MS.gene35924:CDS
GGTGGGAAAGGAGGTGAGGA+TGG 0.424678 2.1:+13591517 MS.gene35924:CDS
CCAAAGAGTAAAATCAATAT+CGG 0.426147 2.1:+13591626 MS.gene35924:CDS
CCTGGGTTCGCAGCATGGTT+AGG 0.428468 2.1:+13589627 MS.gene35924:CDS
TTTCTAATTATATGAAAAGA+AGG 0.431114 2.1:-13589122 None:intergenic
ACAATCACCGGCACCCTTGA+AGG 0.439753 2.1:+13588730 MS.gene35924:CDS
TAAATAATTTCAGGAGTACC+TGG 0.440097 2.1:+13589609 MS.gene35924:intron
GGAGAGTTTCAACGGCTAGA+TGG 0.442497 2.1:-13588678 None:intergenic
CGCAGCATGGTTAGGAATAG+AGG 0.456840 2.1:+13589635 MS.gene35924:CDS
TGTAGGGTCATTGGCAGCAC+TGG 0.462075 2.1:+13589753 MS.gene35924:CDS
AGGTAAACATCAATACCATC+AGG 0.462166 2.1:-13591225 None:intergenic
GGAAAGGAGGTGAGGATGGA+AGG 0.464290 2.1:+13591521 MS.gene35924:CDS
GATAGTGAAATCCCATTAGC+AGG 0.467976 2.1:-13589152 None:intergenic
TTGCTAAGATACGAGGATGT+AGG 0.473300 2.1:+13589736 MS.gene35924:CDS
ATGCTAGAATACCACTTTGT+GGG 0.481843 2.1:+13591301 MS.gene35924:CDS
CGAGACCATATCCATTCAAA+AGG 0.487436 2.1:-13589079 None:intergenic
ATACGAGGATGTAGGGTCAT+TGG 0.487753 2.1:+13589744 MS.gene35924:CDS
TCCGTTGATCCATATCTTCG+CGG 0.487808 2.1:+13588706 MS.gene35924:CDS
GTACTAGGAGACCCAAAGCC+AGG 0.490910 2.1:+13589657 MS.gene35924:CDS
CAACGGCTAGATGGTCTTCA+GGG 0.493384 2.1:-13588669 None:intergenic
TCTGCTGCTTCTGGTGCTGT+TGG 0.500057 2.1:+13589696 MS.gene35924:CDS
GGTGCTGTTGGTATGAATGC+TGG 0.505825 2.1:+13589708 MS.gene35924:CDS
TCCTGAAGGTGTTCCAACCT+CGG 0.512018 2.1:+13588597 MS.gene35924:CDS
TTCTAGCATTCTTGTTGACA+TGG 0.514997 2.1:-13591287 None:intergenic
GTCTTCAGGGATTGAATCAT+CGG 0.517771 2.1:-13588656 None:intergenic
TGGTTAGGAATAGAGGTACT+AGG 0.520082 2.1:+13589642 MS.gene35924:CDS
TGCTAAGATACGAGGATGTA+GGG 0.520424 2.1:+13589737 MS.gene35924:CDS
AGTTTAAGATGATCCGAGGT+TGG 0.522459 2.1:-13588610 None:intergenic
TCTTCTGAACATGGTGGGAA+AGG 0.523236 2.1:+13591505 MS.gene35924:CDS
AATGCTAGAATACCACTTTG+TGG 0.527279 2.1:+13591300 MS.gene35924:CDS
ATTTCACTATCAAATTATCT+CGG 0.529600 2.1:+13589164 MS.gene35924:CDS
TACAACATTTGCAGTTGTAA+GGG 0.533855 2.1:+13589016 MS.gene35924:CDS
GATATGAACACATTGGATCC+TGG 0.535102 2.1:-13589675 None:intergenic
CAGCACTGGCTCTGATGAGA+AGG 0.546270 2.1:+13589767 MS.gene35924:CDS
ATTTGGTAGAAAACAAAGAA+TGG 0.556601 2.1:+13588557 MS.gene35924:CDS
TATCTTCGCGGAACAATCAC+CGG 0.558813 2.1:+13588718 MS.gene35924:CDS
CATTAGAAATCTTCTGAACA+TGG 0.559955 2.1:+13591496 MS.gene35924:CDS
GATATGGATCAACGGAGAGA+AGG 0.573244 2.1:-13588699 None:intergenic
AGAAATCTTCTGAACATGGT+GGG 0.577910 2.1:+13591500 MS.gene35924:CDS
CCTAACCATGCTGCGAACCC+AGG 0.583354 2.1:-13589627 None:intergenic
ACCTGATTAAGTTGATATTG+TGG 0.584585 2.1:-13588763 None:intergenic
AGCAGCAGATATGAACACAT+TGG 0.591491 2.1:-13589682 None:intergenic
GAGTACCTGGGTTCGCAGCA+TGG 0.592297 2.1:+13589622 MS.gene35924:CDS
TGTAAGGGTAATTCGATCCA+AGG 0.592533 2.1:+13589031 MS.gene35924:CDS
AAATAATTTCAGGAGTACCT+GGG 0.593770 2.1:+13589610 MS.gene35924:intron
AAGGATAGTAAATACAGTGA+GGG 0.594157 2.1:+13589050 MS.gene35924:CDS
TCTGAACATGGTGGGAAAGG+AGG 0.598581 2.1:+13591508 MS.gene35924:CDS
AGGATAGTAAATACAGTGAG+GGG 0.615694 2.1:+13589051 MS.gene35924:CDS
GGAGAGAAGGAGAGTTTCAA+CGG 0.616397 2.1:-13588686 None:intergenic
GTTTACCTTGACAATGTTGG+TGG 0.618276 2.1:+13591240 MS.gene35924:CDS
GTAGCTGCATACTGTCCTGA+AGG 0.620585 2.1:+13588583 MS.gene35924:CDS
GATGTTTACCTTGACAATGT+TGG 0.620700 2.1:+13591237 MS.gene35924:CDS
TAGGTTTGGACCGAAAGAGA+AGG 0.627714 2.1:+13591473 MS.gene35924:intron
TGAGATATCATCCCACAAAG+TGG 0.634211 2.1:-13591312 None:intergenic
GGTAAACATCAATACCATCA+GGG 0.638329 2.1:-13591224 None:intergenic
TAGAAATCTTCTGAACATGG+TGG 0.647455 2.1:+13591499 MS.gene35924:CDS
GCGGAGTTTAAGATGATCCG+AGG 0.648505 2.1:-13588614 None:intergenic
CAAGGATAGTAAATACAGTG+AGG 0.660082 2.1:+13589049 MS.gene35924:CDS
TCCGCGAAGATATGGATCAA+CGG 0.662990 2.1:-13588707 None:intergenic
GGATAGTAAATACAGTGAGG+GGG 0.664890 2.1:+13589052 MS.gene35924:CDS
GAATTACGACTTGCTTAAAG+CGG 0.671434 2.1:-13590481 None:intergenic
ACATGGTGGGAAAGGAGGTG+AGG 0.678852 2.1:+13591513 MS.gene35924:CDS
GGTCAGCTTGCTAAGATACG+AGG 0.707694 2.1:+13589729 MS.gene35924:CDS
CAAGAGAAAGAGAAACAGTG+CGG 0.754469 2.1:-13588633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTATTTATTAGAATTA+GGG + chr2.1:13588786-13588805 MS.gene35924:intron 10.0%
!! ATATATATATATATATTTGC+AGG + chr2.1:13588989-13589008 MS.gene35924:intron 10.0%
!! TAAAATGAAATTTGTATTTA+AGG + chr2.1:13589532-13589551 MS.gene35924:intron 10.0%
!! TACATTTATTTATTAGAATT+AGG + chr2.1:13588785-13588804 MS.gene35924:intron 10.0%
!! TATTATATAAAGAAAATAAG+TGG - chr2.1:13589806-13589825 None:intergenic 10.0%
!!! AAATTTTTGAAGTATAAAAT+TGG + chr2.1:13590818-13590837 MS.gene35924:intron 10.0%
!!! AATTAGAAAATTGAAATTTT+TGG - chr2.1:13591430-13591449 None:intergenic 10.0%
!!! AATTTTTGAAGTATAAAATT+GGG + chr2.1:13590819-13590838 MS.gene35924:intron 10.0%
!!! ATTAGAAAATTGAAATTTTT+GGG - chr2.1:13591429-13591448 None:intergenic 10.0%
!!! CTTATTTTCTTTATATAATA+TGG + chr2.1:13589806-13589825 MS.gene35924:intron 10.0%
!!! GTATTTTTTTTAATAAAAAG+TGG + chr2.1:13588893-13588912 MS.gene35924:intron 10.0%
!!! TTTTATTCAATTAGTTTAAA+AGG + chr2.1:13589279-13589298 MS.gene35924:intron 10.0%
!!! TTTTTATGTGAAATTTTATA+GGG - chr2.1:13591097-13591116 None:intergenic 10.0%
!! AAAAAAATACTCATATTTGA+TGG + chr2.1:13589487-13589506 MS.gene35924:intron 15.0%
!! TTAGTAAATTGTTATAATGT+TGG + chr2.1:13591448-13591467 MS.gene35924:intron 15.0%
!! TTTCTAATTATATGAAAAGA+AGG - chr2.1:13589125-13589144 None:intergenic 15.0%
!!! ATTTCTAAAAAAAAATTGGT+GGG + chr2.1:13590588-13590607 MS.gene35924:intron 15.0%
!!! ATTTTTGAAGTATAAAATTG+GGG + chr2.1:13590820-13590839 MS.gene35924:intron 15.0%
!!! CTTTTTATGTGAAATTTTAT+AGG - chr2.1:13591098-13591117 None:intergenic 15.0%
!!! TCATTTAACGTTTTTTAAAT+CGG - chr2.1:13590674-13590693 None:intergenic 15.0%
!! AAAAAGATAGCTAATACATT+TGG - chr2.1:13590076-13590095 None:intergenic 20.0%
!! AAGAATACATAAAGAGAAAA+AGG - chr2.1:13590509-13590528 None:intergenic 20.0%
!! AATTGTTATAATGTTGGTAT+AGG + chr2.1:13591454-13591473 MS.gene35924:intron 20.0%
!! ATTTCACTATCAAATTATCT+CGG + chr2.1:13589164-13589183 MS.gene35924:CDS 20.0%
!! CTAAAGAAATGATAAAAACT+TGG - chr2.1:13589882-13589901 None:intergenic 20.0%
!! GATGATATCTCAATATAATA+AGG + chr2.1:13591323-13591342 MS.gene35924:CDS 20.0%
!! TTACAAAACAAAATTTCATG+AGG - chr2.1:13589849-13589868 None:intergenic 20.0%
!! TTATTTATTTCGATGCTAAT+AGG - chr2.1:13589963-13589982 None:intergenic 20.0%
!! TTGATTTATAAAGTTCTTTC+CGG - chr2.1:13590646-13590665 None:intergenic 20.0%
!! TTGCAATTTATCTGTATTTA+TGG + chr2.1:13591023-13591042 MS.gene35924:intron 20.0%
!!! CACCAATTTTTTTTTAGAAA+TGG - chr2.1:13590589-13590608 None:intergenic 20.0%
!!! CATTTCTAAAAAAAAATTGG+TGG + chr2.1:13590587-13590606 MS.gene35924:intron 20.0%
!!! CTCCATTTCTAAAAAAAAAT+TGG + chr2.1:13590584-13590603 MS.gene35924:intron 20.0%
!!! TTAAGTTTTTGTTTTGTGTT+CGG + chr2.1:13590109-13590128 MS.gene35924:intron 20.0%
!!! TTTCTAAAAAAAAATTGGTG+GGG + chr2.1:13590589-13590608 MS.gene35924:intron 20.0%
!!! TTTTGTGATTAAAATAGAGA+GGG - chr2.1:13590053-13590072 None:intergenic 20.0%
! AACTATCATTCACTTCAAAA+TGG - chr2.1:13590707-13590726 None:intergenic 25.0%
! ATCCGATCGAAATATAATAT+TGG - chr2.1:13590304-13590323 None:intergenic 25.0%
! ATTTGGTAGAAAACAAAGAA+TGG + chr2.1:13588557-13588576 MS.gene35924:CDS 25.0%
! CAATATAATAAGGTGAATGA+GGG + chr2.1:13591333-13591352 MS.gene35924:intron 25.0%
! CCAAAGAGTAAAATCAATAT+CGG + chr2.1:13591626-13591645 MS.gene35924:CDS 25.0%
! GTTGATATTGTGGAATAAAA+AGG - chr2.1:13588756-13588775 None:intergenic 25.0%
! TAAATAAGTACCTCTCATTA+TGG + chr2.1:13589976-13589995 MS.gene35924:intron 25.0%
! TATAAGAATATCCACAACAA+TGG + chr2.1:13589926-13589945 MS.gene35924:intron 25.0%
! TATTATATTTCGATCGGATT+TGG + chr2.1:13590305-13590324 MS.gene35924:intron 25.0%
! TCAATATAATAAGGTGAATG+AGG + chr2.1:13591332-13591351 MS.gene35924:intron 25.0%
! TGCCAATATTATATTTCGAT+CGG + chr2.1:13590299-13590318 MS.gene35924:intron 25.0%
! TTATAATGTTGGTATAGGTT+TGG + chr2.1:13591459-13591478 MS.gene35924:intron 25.0%
! TTTGCATGGATAATTATCTT+TGG + chr2.1:13590212-13590231 MS.gene35924:intron 25.0%
!! AAAAGTTGTTGTTCAAGTTA+AGG + chr2.1:13591703-13591722 MS.gene35924:CDS 25.0%
!! AAATCATATTTGCATCGTTT+TGG + chr2.1:13591554-13591573 MS.gene35924:CDS 25.0%
!! ATACTTTTGTAGTATTAACG+TGG + chr2.1:13589439-13589458 MS.gene35924:intron 25.0%
!! GTTTTGTGATTAAAATAGAG+AGG - chr2.1:13590054-13590073 None:intergenic 25.0%
!! TACTTTTGTAGTATTAACGT+GGG + chr2.1:13589440-13589459 MS.gene35924:intron 25.0%
!! TATTTTCACTAGAATTTTGC+AGG + chr2.1:13591196-13591215 MS.gene35924:intron 25.0%
!! TTGCAATTTGTTTGCATTTA+GGG - chr2.1:13590893-13590912 None:intergenic 25.0%
!! TTTGCAATTTGTTTGCATTT+AGG - chr2.1:13590894-13590913 None:intergenic 25.0%
!!! GTTAATAAGTCGATTTTGTA+AGG - chr2.1:13588828-13588847 None:intergenic 25.0%
!!! TCGTATACATATTTTTTGCA+TGG + chr2.1:13590198-13590217 MS.gene35924:intron 25.0%
!!! TTGAAATTTTTGGGCATTTT+TGG - chr2.1:13591420-13591439 None:intergenic 25.0%
AACTATGGTCATTTACTCAA+TGG - chr2.1:13590735-13590754 None:intergenic 30.0%
AAGGATAGTAAATACAGTGA+GGG + chr2.1:13589050-13589069 MS.gene35924:CDS 30.0%
AGAAAAATTGATCCTGCTAA+TGG + chr2.1:13589140-13589159 MS.gene35924:CDS 30.0%
ATGGAAAAATACTTGCAAGA+AGG + chr2.1:13591593-13591612 MS.gene35924:CDS 30.0%
ATTTCTAATGCCTTCTCTTT+CGG - chr2.1:13591486-13591505 None:intergenic 30.0%
CATTAGAAATCTTCTGAACA+TGG + chr2.1:13591496-13591515 MS.gene35924:CDS 30.0%
CATTATGGAGAGAAAACATT+TGG + chr2.1:13589991-13590010 MS.gene35924:intron 30.0%
GAAAAATTGATCCTGCTAAT+GGG + chr2.1:13589141-13589160 MS.gene35924:CDS 30.0%
TAAAAAAAAATTGGTGGGGT+GGG + chr2.1:13590593-13590612 MS.gene35924:intron 30.0%
TACAACATTTGCAGTTGTAA+GGG + chr2.1:13589016-13589035 MS.gene35924:CDS 30.0%
TCAAATTATCTCGGTTCTTT+AGG + chr2.1:13589173-13589192 MS.gene35924:CDS 30.0%
TCCACAATATCAACTTAATC+AGG + chr2.1:13588762-13588781 MS.gene35924:CDS 30.0%
TTACAACATTTGCAGTTGTA+AGG + chr2.1:13589015-13589034 MS.gene35924:CDS 30.0%
! AAGCTCATCAAAGAGAATTT+TGG + chr2.1:13590414-13590433 MS.gene35924:CDS 30.0%
! GAGAATTTTGGATATGATGA+TGG + chr2.1:13590426-13590445 MS.gene35924:CDS 30.0%
! GATATCCTTTTGAATGGATA+TGG + chr2.1:13589074-13589093 MS.gene35924:CDS 30.0%
! GTTGTTTAAGATTGCTCTTT+AGG - chr2.1:13590780-13590799 None:intergenic 30.0%
! TATCGGAATTGAGAACTTTT+TGG + chr2.1:13591643-13591662 MS.gene35924:CDS 30.0%
! TGGAGATTTTGTCAAAGATA+TGG + chr2.1:13591574-13591593 MS.gene35924:CDS 30.0%
!! AAATAATTTCAGGAGTACCT+GGG + chr2.1:13589610-13589629 MS.gene35924:intron 30.0%
!! ACCTGATTAAGTTGATATTG+TGG - chr2.1:13588766-13588785 None:intergenic 30.0%
!! TAAATAATTTCAGGAGTACC+TGG + chr2.1:13589609-13589628 MS.gene35924:intron 30.0%
!!! CCGATATTGATTTTACTCTT+TGG - chr2.1:13591629-13591648 None:intergenic 30.0%
!!! GTTTTCTCTAGTTCTAACAT+TGG + chr2.1:13591680-13591699 MS.gene35924:CDS 30.0%
AAAAAAAAATTGGTGGGGTG+GGG + chr2.1:13590594-13590613 MS.gene35924:intron 35.0%
AAGAATATCCACAACAATGG+TGG + chr2.1:13589929-13589948 MS.gene35924:intron 35.0%
AATGCTAGAATACCACTTTG+TGG + chr2.1:13591300-13591319 MS.gene35924:CDS 35.0%
ACTAACAGAGTCTACATTCA+GGG + chr2.1:13590994-13591013 MS.gene35924:intron 35.0%
AGAAATCTTCTGAACATGGT+GGG + chr2.1:13591500-13591519 MS.gene35924:CDS 35.0%
AGAATATCCACAACAATGGT+GGG + chr2.1:13589930-13589949 MS.gene35924:intron 35.0%
AGACTCTGTTGATCAATTTC+AGG + chr2.1:13590929-13590948 MS.gene35924:intron 35.0%
AGGATAGTAAATACAGTGAG+GGG + chr2.1:13589051-13589070 MS.gene35924:CDS 35.0%
AGGTAAACATCAATACCATC+AGG - chr2.1:13591228-13591247 None:intergenic 35.0%
ATCAACAGAGTCTACATTCA+TGG - chr2.1:13590922-13590941 None:intergenic 35.0%
ATGCTAGAATACCACTTTGT+GGG + chr2.1:13591301-13591320 MS.gene35924:CDS 35.0%
CAAGGATAGTAAATACAGTG+AGG + chr2.1:13589049-13589068 MS.gene35924:CDS 35.0%
CAATTGCACACAAACAACTA+TGG - chr2.1:13590750-13590769 None:intergenic 35.0%
CTAAAAAAAAATTGGTGGGG+TGG + chr2.1:13590592-13590611 MS.gene35924:intron 35.0%
CTCACTGTATTTACTATCCT+TGG - chr2.1:13589051-13589070 None:intergenic 35.0%
CTTACAACTTGAAACATACC+TGG + chr2.1:13590376-13590395 MS.gene35924:intron 35.0%
GACTCTGTTGATCAATTTCA+GGG + chr2.1:13590930-13590949 MS.gene35924:intron 35.0%
GATGTTTACCTTGACAATGT+TGG + chr2.1:13591237-13591256 MS.gene35924:CDS 35.0%
GGTAAACATCAATACCATCA+GGG - chr2.1:13591227-13591246 None:intergenic 35.0%
TAGAAATCTTCTGAACATGG+TGG + chr2.1:13591499-13591518 MS.gene35924:CDS 35.0%
TAGTTCATCCAAATTGACAC+CGG + chr2.1:13590624-13590643 MS.gene35924:intron 35.0%
TGGAATAAAAAGGCCTTCAA+GGG - chr2.1:13588746-13588765 None:intergenic 35.0%
TTCTAGCATTCTTGTTGACA+TGG - chr2.1:13591290-13591309 None:intergenic 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG + chr2.1:13590847-13590866 MS.gene35924:intron 35.0%
! GAATTACGACTTGCTTAAAG+CGG - chr2.1:13590484-13590503 None:intergenic 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG + chr2.1:13590846-13590865 MS.gene35924:intron 35.0%
! TGTTTTCTCTCCATAATGAG+AGG - chr2.1:13589989-13590008 None:intergenic 35.0%
! TTTTACCACCAACATTGTCA+AGG - chr2.1:13591248-13591267 None:intergenic 35.0%
AAAAAAAATTGGTGGGGTGG+GGG + chr2.1:13590595-13590614 MS.gene35924:intron 40.0%
ACTAAAGGGGTCTACATTCA+GGG + chr2.1:13590962-13590981 MS.gene35924:intron 40.0%
AGCAGCAGATATGAACACAT+TGG - chr2.1:13589685-13589704 None:intergenic 40.0%
AGGGACTAAAGTGACTAAAG+GGG + chr2.1:13590949-13590968 MS.gene35924:intron 40.0%
CAACTTGAAACATACCTGGT+TGG + chr2.1:13590380-13590399 MS.gene35924:intron 40.0%
CAAGAGAAAGAGAAACAGTG+CGG - chr2.1:13588636-13588655 None:intergenic 40.0%
CAGGGACTAAAGTGACTAAA+GGG + chr2.1:13590948-13590967 MS.gene35924:intron 40.0%
CGAGACCATATCCATTCAAA+AGG - chr2.1:13589082-13589101 None:intergenic 40.0%
GACGACTCATTTCCTATTCA+GGG + chr2.1:13591054-13591073 MS.gene35924:intron 40.0%
GACTAACAGAGTCTACATTC+AGG + chr2.1:13590993-13591012 MS.gene35924:intron 40.0%
GACTACTCATTTCCCATTCA+AGG - chr2.1:13590862-13590881 None:intergenic 40.0%
GATAGTGAAATCCCATTAGC+AGG - chr2.1:13589155-13589174 None:intergenic 40.0%
GATATGAACACATTGGATCC+TGG - chr2.1:13589678-13589697 None:intergenic 40.0%
GGATAGTAAATACAGTGAGG+GGG + chr2.1:13589052-13589071 MS.gene35924:CDS 40.0%
GTCTTCAGGGATTGAATCAT+CGG - chr2.1:13588659-13588678 None:intergenic 40.0%
GTGGAATAAAAAGGCCTTCA+AGG - chr2.1:13588747-13588766 None:intergenic 40.0%
GTTGTTTGTGTGCAATTGCT+AGG + chr2.1:13590752-13590771 MS.gene35924:intron 40.0%
GTTTACCTTGACAATGTTGG+TGG + chr2.1:13591240-13591259 MS.gene35924:CDS 40.0%
TCAGGGACTAAAGTGACTAA+AGG + chr2.1:13590947-13590966 MS.gene35924:intron 40.0%
TGACGACTCATTTCCTATTC+AGG + chr2.1:13591053-13591072 MS.gene35924:intron 40.0%
TGAGATATCATCCCACAAAG+TGG - chr2.1:13591315-13591334 None:intergenic 40.0%
TGCTAAGATACGAGGATGTA+GGG + chr2.1:13589737-13589756 MS.gene35924:CDS 40.0%
TGTAAGGGTAATTCGATCCA+AGG + chr2.1:13589031-13589050 MS.gene35924:CDS 40.0%
TTGCTAAGATACGAGGATGT+AGG + chr2.1:13589736-13589755 MS.gene35924:CDS 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG - chr2.1:13591069-13591088 None:intergenic 40.0%
! AGTTCTTTCCGGTGTCAATT+TGG - chr2.1:13590635-13590654 None:intergenic 40.0%
! AGTTTAAGATGATCCGAGGT+TGG - chr2.1:13588613-13588632 None:intergenic 40.0%
! TTTTGCAGGTATTTCCCTGA+TGG + chr2.1:13591210-13591229 MS.gene35924:intron 40.0%
!! ACATACCTGGTTGGTTTATC+AGG + chr2.1:13590389-13590408 MS.gene35924:intron 40.0%
!! TGGTTAGGAATAGAGGTACT+AGG + chr2.1:13589642-13589661 MS.gene35924:CDS 40.0%
AACACATTGGATCCTGGCTT+TGG - chr2.1:13589672-13589691 None:intergenic 45.0%
ATACGAGGATGTAGGGTCAT+TGG + chr2.1:13589744-13589763 MS.gene35924:CDS 45.0%
CTTCACCTGATAAACCAACC+AGG - chr2.1:13590397-13590416 None:intergenic 45.0%
GACTAAAGGGGTCTACATTC+AGG + chr2.1:13590961-13590980 MS.gene35924:intron 45.0%
GATATGGATCAACGGAGAGA+AGG - chr2.1:13588702-13588721 None:intergenic 45.0%
GGAGAGAAGGAGAGTTTCAA+CGG - chr2.1:13588689-13588708 None:intergenic 45.0%
GTGATTGTTCCGCGAAGATA+TGG - chr2.1:13588718-13588737 None:intergenic 45.0%
TAGGTTTGGACCGAAAGAGA+AGG + chr2.1:13591473-13591492 MS.gene35924:intron 45.0%
TATCTTCGCGGAACAATCAC+CGG + chr2.1:13588718-13588737 MS.gene35924:CDS 45.0%
TCCGCGAAGATATGGATCAA+CGG - chr2.1:13588710-13588729 None:intergenic 45.0%
TCCGTTGATCCATATCTTCG+CGG + chr2.1:13588706-13588725 MS.gene35924:CDS 45.0%
! ACACATTGGATCCTGGCTTT+GGG - chr2.1:13589671-13589690 None:intergenic 45.0%
! GAGGGGGATATCCTTTTGAA+TGG + chr2.1:13589068-13589087 MS.gene35924:CDS 45.0%
! GTGTTCATATCTGCTGCTTC+TGG + chr2.1:13589687-13589706 MS.gene35924:CDS 45.0%
! TCTTCTGAACATGGTGGGAA+AGG + chr2.1:13591505-13591524 MS.gene35924:CDS 45.0%
!! AATATTAATTAAATAATTTC+AGG + chr2.1:13589600-13589619 MS.gene35924:intron 5.0%
!!! ATAATTTTTATCAATAAAAT+CGG - chr2.1:13589207-13589226 None:intergenic 5.0%
!!! TAAATTATTTGTTTTTATTT+GGG - chr2.1:13589514-13589533 None:intergenic 5.0%
!!! TAATATTTTCAAATTATTTA+CGG + chr2.1:13590333-13590352 MS.gene35924:intron 5.0%
!!! TATAAAAAAAATGAATTTTT+CGG + chr2.1:13590174-13590193 MS.gene35924:intron 5.0%
!!! TTAAATTATTTGTTTTTATT+TGG - chr2.1:13589515-13589534 None:intergenic 5.0%
!!! TTTTATTCAATTATTTTAAA+AGG + chr2.1:13589242-13589261 MS.gene35924:intron 5.0%
CAACGGCTAGATGGTCTTCA+GGG - chr2.1:13588672-13588691 None:intergenic 50.0%
CGCAGCATGGTTAGGAATAG+AGG + chr2.1:13589635-13589654 MS.gene35924:CDS 50.0%
GGAGAGTTTCAACGGCTAGA+TGG - chr2.1:13588681-13588700 None:intergenic 50.0%
GGTGAGGATGGAAGGCTATA+TGG + chr2.1:13591529-13591548 MS.gene35924:CDS 50.0%
GTAGCTGCATACTGTCCTGA+AGG + chr2.1:13588583-13588602 MS.gene35924:CDS 50.0%
TCAACGGCTAGATGGTCTTC+AGG - chr2.1:13588673-13588692 None:intergenic 50.0%
! AAAAAGGCCTTCAAGGGTGC+CGG - chr2.1:13588740-13588759 None:intergenic 50.0%
! GCGGAGTTTAAGATGATCCG+AGG - chr2.1:13588617-13588636 None:intergenic 50.0%
! TCTGAACATGGTGGGAAAGG+AGG + chr2.1:13591508-13591527 MS.gene35924:CDS 50.0%
! TGAAGCACCCACCATTGTTG+TGG - chr2.1:13589940-13589959 None:intergenic 50.0%
!! GGTCAGCTTGCTAAGATACG+AGG + chr2.1:13589729-13589748 MS.gene35924:CDS 50.0%
!! GGTGCTGTTGGTATGAATGC+TGG + chr2.1:13589708-13589727 MS.gene35924:CDS 50.0%
!! TCCTGAAGGTGTTCCAACCT+CGG + chr2.1:13588597-13588616 MS.gene35924:CDS 50.0%
AAAAATTGGTGGGGTGGGGG+TGG + chr2.1:13590598-13590617 MS.gene35924:intron 55.0%
AAAATTGGTGGGGTGGGGGT+GGG + chr2.1:13590599-13590618 MS.gene35924:intron 55.0%
ACAATCACCGGCACCCTTGA+AGG + chr2.1:13588730-13588749 MS.gene35924:CDS 55.0%
GGAAAGGAGGTGAGGATGGA+AGG + chr2.1:13591521-13591540 MS.gene35924:CDS 55.0%
GTACTAGGAGACCCAAAGCC+AGG + chr2.1:13589657-13589676 MS.gene35924:CDS 55.0%
TCCGAGGTTGGAACACCTTC+AGG - chr2.1:13588601-13588620 None:intergenic 55.0%
TGTAGGGTCATTGGCAGCAC+TGG + chr2.1:13589753-13589772 MS.gene35924:CDS 55.0%
! ACATGGTGGGAAAGGAGGTG+AGG + chr2.1:13591513-13591532 MS.gene35924:CDS 55.0%
!! CAGCACTGGCTCTGATGAGA+AGG + chr2.1:13589767-13589786 MS.gene35924:CDS 55.0%
!! TCTGCTGCTTCTGGTGCTGT+TGG + chr2.1:13589696-13589715 MS.gene35924:CDS 55.0%
AAATTGGTGGGGTGGGGGTG+GGG + chr2.1:13590600-13590619 MS.gene35924:intron 60.0%
CCTAACCATGCTGCGAACCC+AGG - chr2.1:13589630-13589649 None:intergenic 60.0%
CCTGGGTTCGCAGCATGGTT+AGG + chr2.1:13589627-13589646 MS.gene35924:CDS 60.0%
GAGTACCTGGGTTCGCAGCA+TGG + chr2.1:13589622-13589641 MS.gene35924:CDS 60.0%
GGTGGGAAAGGAGGTGAGGA+TGG + chr2.1:13591517-13591536 MS.gene35924:CDS 60.0%
AATTGGTGGGGTGGGGGTGG+GGG + chr2.1:13590601-13590620 MS.gene35924:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 13588550 13591730 13588550 ID=MS.gene35924
chr2.1 mRNA 13588550 13591730 13588550 ID=MS.gene35924.t1;Parent=MS.gene35924
chr2.1 exon 13588550 13588783 13588550 ID=MS.gene35924.t1.exon1;Parent=MS.gene35924.t1
chr2.1 CDS 13588550 13588783 13588550 ID=cds.MS.gene35924.t1;Parent=MS.gene35924.t1
chr2.1 exon 13589011 13589194 13589011 ID=MS.gene35924.t1.exon2;Parent=MS.gene35924.t1
chr2.1 CDS 13589011 13589194 13589011 ID=cds.MS.gene35924.t1;Parent=MS.gene35924.t1
chr2.1 exon 13589622 13589788 13589622 ID=MS.gene35924.t1.exon3;Parent=MS.gene35924.t1
chr2.1 CDS 13589622 13589788 13589622 ID=cds.MS.gene35924.t1;Parent=MS.gene35924.t1
chr2.1 exon 13590411 13590493 13590411 ID=MS.gene35924.t1.exon4;Parent=MS.gene35924.t1
chr2.1 CDS 13590411 13590493 13590411 ID=cds.MS.gene35924.t1;Parent=MS.gene35924.t1
chr2.1 exon 13591218 13591344 13591218 ID=MS.gene35924.t1.exon5;Parent=MS.gene35924.t1
chr2.1 CDS 13591218 13591344 13591218 ID=cds.MS.gene35924.t1;Parent=MS.gene35924.t1
chr2.1 exon 13591476 13591730 13591476 ID=MS.gene35924.t1.exon6;Parent=MS.gene35924.t1
chr2.1 CDS 13591476 13591730 13591476 ID=cds.MS.gene35924.t1;Parent=MS.gene35924.t1
Gene Sequence

>MS.gene35924

ATGGGAGATTTGGTAGAAAACAAAGAATGGTACGTAGCTGCATACTGTCCTGAAGGTGTTCCAACCTCGGATCATCTTAAACTCCGCACTGTTTCTCTTTCTCTTGCCGATGATTCAATCCCTGAAGACCATCTAGCCGTTGAAACTCTCCTTCTCTCCGTTGATCCATATCTTCGCGGAACAATCACCGGCACCCTTGAAGGCCTTTTTATTCCACAATATCAACTTAATCAGGTACATTTATTTATTAGAATTAGGGTTGAGTCTCATTAAAGCCTTACAAAATCGACTTATTAACTTACGTCAAATGTTATATTTTCTAATGTGATACTTTTAACTTCTAGTATTTTTTTTAATAAAAAGTGGTACATTATTTATAACTATCTTTGTTACTTTGTATATGCATGCATATTATTGTTTAATTCGTTGAATAATGTGAATATATATATATATATTTGCAGGTGATTACAACATTTGCAGTTGTAAGGGTAATTCGATCCAAGGATAGTAAATACAGTGAGGGGGATATCCTTTTGAATGGATATGGTCTCGTTGCTGAGTATAGCATTGTACCTTCTTTTCATATAATTAGAAAAATTGATCCTGCTAATGGGATTTCACTATCAAATTATCTCGGTTCTTTAGGTTCGTTTTCCGATTTTATTGATAAAAATTATAAGTATAGTTGTAAATTTTATTCAATTATTTTAAAAGGTTTAACTTGTAAATTTTTATTCAATTAGTTTAAAAGGTTTAACTAAAGTATAAAAAATTATAAGAAAAAATGTCACACTAAATTTAAGTATCATTTTTCTTTAAAACTATATATATTTTTTTGAAGAAATCTATAAAACTATATCTGTGTGTGTTTTATTATCTTTTAAGATATATACTTTTGTAGTATTAACGTGGGTCTAAAATATGAAAAAAAATAATAAAAAAAATACTCATATTTGATGGTCCCAAATAAAAACAAATAATTTAAAATGAAATTTGTATTTAAGGACAATTTATTTTTTCAAAAAATTGTTTATAATTAGATAATAAAAAAATATTAATTAAATAATTTCAGGAGTACCTGGGTTCGCAGCATGGTTAGGAATAGAGGTACTAGGAGACCCAAAGCCAGGATCCAATGTGTTCATATCTGCTGCTTCTGGTGCTGTTGGTATGAATGCTGGTCAGCTTGCTAAGATACGAGGATGTAGGGTCATTGGCAGCACTGGCTCTGATGAGAAGGTAACATAACAGTTCCACTTATTTTCTTTATATAATATGGAAAATTTTGACTTTAATCCTCATGAAATTTTGTTTTGTAATATAGCAGTTCCAAGTTTTTATCATTTCTTTAGAACATAAAATACATATATATTGAATATAAGAATATCCACAACAATGGTGGGTGCTTCACCTATTAGCATCGAAATAAATAAGTACCTCTCATTATGGAGAGAAAACATTTGGTGTTTATAGAAAAGAGTGACTATGTAAGCACTTTTTCCCTCTCTATTTTAATCACAAAACCAAATGTATTAGCTATCTTTTTTAATCACTTTTTATTAAGTTTTTGTTTTGTGTTCGGCTACATGCACATGTTAAGATTTCTATAGTTGATATAATTTTGTATAAAAAAAATGAATTTTTCGGTTCGTATACATATTTTTTGCATGGATAATTATCTTTGGACTAAAGAAAATGTGAATAAATGAAGACAGTAAACTCATGCACAATAGATAGATATAAACATTTTGCCAATATTATATTTCGATCGGATTTGGATTTTTAATATTTTCAAATTATTTACGGCTAATTTTTTTGACATGTTACTTACAACTTGAAACATACCTGGTTGGTTTATCAGGTGAAGCTCATCAAAGAGAATTTTGGATATGATGATGGATTCAACTACAATATAGAATCAGAATTTGATGCCGCTTTAAGCAAGTCGTAATTCGTCCTTTTTCTCTTTATGTATTCTTTTTTTTTTTTTTTACATTGTTATATAATGTTAGAGTCAACACAGAGCAAGATATTCTCCATTTCTAAAAAAAAATTGGTGGGGTGGGGGTGGGGGTAGTTCATCCAAATTGACACCGGAAAGAACTTTATAAATCAATTACACCGATTTAAAAAACGTTAAATGACAATTAACGACCATTTTGAAGTGAATGATAGTTAATTGCCATTGAGTAAATGACCATAGTTGTTTGTGTGCAATTGCTAGGTGCCTAAAGAGCAATCTTAAACAACTTGTCAGTTGTCACAAGCAAATTTTTGAAGTATAAAATTGGGGAATTAGTCACTTTAGTCCTTGAATGGGAAATGAGTAGTCAATTTAGTCCCTAAATGCAAACAAATTGCAAAACAGTCCATGAATGTAGACTCTGTTGATCAATTTCAGGGACTAAAGTGACTAAAGGGGTCTACATTCAGGGACTAAATTGACTAACAGAGTCTACATTCAGGGACTATTTTGCAATTTATCTGTATTTATGGACTAAAGTGACGACTCATTTCCTATTCAGGGACTAAAGTGACTAATCTCCCTATAAAATTTCACATAAAAAGACTTATGACAAAAATGTACATACTCAAAAGTTAGACTAATATATATTTTAGTTTTTCAAAATTAAGTTAATACTCTGATATTTTCACTAGAATTTTGCAGGTATTTCCCTGATGGTATTGATGTTTACCTTGACAATGTTGGTGGTAAAATGCTCGAATCTGTACTTAACCATGTCAACAAGAATGCTAGAATACCACTTTGTGGGATGATATCTCAATATAATAAGGTGAATGAGGGTAATATAGTGTACACTTCAACGAATGCATTTTAAACATAGAACACATGACTCATTAATTTACCAAAAATGCCCAAAAATTTCAATTTTCTAATTAGTAAATTGTTATAATGTTGGTATAGGTTTGGACCGAAAGAGAAGGCATTAGAAATCTTCTGAACATGGTGGGAAAGGAGGTGAGGATGGAAGGCTATATGGTTAAATCATATTTGCATCGTTTTGGAGATTTTGTCAAAGATATGGAAAAATACTTGCAAGAAGGCAAAATTAAGCCAAAGAGTAAAATCAATATCGGAATTGAGAACTTTTTGGAGAGCTTAAACTCTGTTTTCTCTAGTTCTAACATTGGAAAAGTTGTTGTTCAAGTTAAGGCTTAG

Protein sequence

>MS.gene35924.t1

MGDLVENKEWYVAAYCPEGVPTSDHLKLRTVSLSLADDSIPEDHLAVETLLLSVDPYLRGTITGTLEGLFIPQYQLNQVITTFAVVRVIRSKDSKYSEGDILLNGYGLVAEYSIVPSFHIIRKIDPANGISLSNYLGSLGVPGFAAWLGIEVLGDPKPGSNVFISAASGAVGMNAGQLAKIRGCRVIGSTGSDEKVKLIKENFGYDDGFNYNIESEFDAALSKYFPDGIDVYLDNVGGKMLESVLNHVNKNARIPLCGMISQYNKVWTEREGIRNLLNMVGKEVRMEGYMVKSYLHRFGDFVKDMEKYLQEGKIKPKSKINIGIENFLESLNSVFSSSNIGKVVVQVKA