Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36106.t1 | XP_013445322.1 | 94.5 | 402 | 14 | 3 | 1 | 402 | 1 | 394 | 1.20E-202 | 715.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36106.t1 | Q0WU02 | 71.2 | 399 | 96 | 3 | 9 | 399 | 39 | 426 | 1.5e-156 | 553.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36106.t1 | A0A072TRA6 | 94.5 | 402 | 14 | 3 | 1 | 402 | 1 | 394 | 8.7e-203 | 715.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene53865 | MS.gene36106 | PPI |
MS.gene049605 | MS.gene36106 | PPI |
MS.gene05112 | MS.gene36106 | PPI |
MS.gene061402 | MS.gene36106 | PPI |
MS.gene032465 | MS.gene36106 | PPI |
MS.gene98420 | MS.gene36106 | PPI |
MS.gene36106 | MS.gene92476 | PPI |
MS.gene36106 | MS.gene008424 | PPI |
MS.gene78686 | MS.gene36106 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36106.t1 | MTR_8g046550 | 95.025 | 402 | 12 | 3 | 1 | 402 | 1 | 394 | 0.0 | 785 |
MS.gene36106.t1 | MTR_2g064405 | 78.000 | 400 | 75 | 4 | 8 | 402 | 2 | 393 | 0.0 | 613 |
MS.gene36106.t1 | MTR_2g064405 | 85.759 | 316 | 45 | 0 | 87 | 402 | 1 | 316 | 0.0 | 541 |
MS.gene36106.t1 | MTR_3g080090 | 62.308 | 390 | 133 | 2 | 12 | 401 | 23 | 398 | 2.49e-174 | 492 |
MS.gene36106.t1 | MTR_7g022890 | 59.948 | 387 | 143 | 4 | 13 | 398 | 20 | 395 | 6.00e-163 | 463 |
MS.gene36106.t1 | MTR_7g022890 | 66.168 | 334 | 111 | 2 | 66 | 398 | 10 | 342 | 4.00e-161 | 457 |
MS.gene36106.t1 | MTR_3g062610 | 55.287 | 331 | 141 | 4 | 72 | 401 | 72 | 396 | 1.32e-127 | 374 |
MS.gene36106.t1 | MTR_5g075680 | 54.683 | 331 | 143 | 4 | 72 | 401 | 12 | 336 | 1.07e-125 | 367 |
MS.gene36106.t1 | MTR_5g075680 | 54.683 | 331 | 143 | 4 | 72 | 401 | 65 | 389 | 3.41e-125 | 367 |
MS.gene36106.t1 | MTR_3g062610 | 51.709 | 234 | 107 | 3 | 72 | 304 | 72 | 300 | 1.48e-78 | 246 |
MS.gene36106.t1 | MTR_5g075680 | 49.200 | 250 | 120 | 4 | 72 | 320 | 65 | 308 | 5.16e-76 | 239 |
MS.gene36106.t1 | MTR_5g075680 | 41.593 | 226 | 119 | 5 | 31 | 255 | 31 | 244 | 4.62e-47 | 161 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36106.t1 | AT1G16310 | 71.429 | 399 | 95 | 3 | 9 | 399 | 39 | 426 | 0.0 | 567 |
MS.gene36106.t1 | AT1G79520 | 71.576 | 387 | 102 | 3 | 16 | 402 | 24 | 402 | 0.0 | 552 |
MS.gene36106.t1 | AT1G79520 | 69.697 | 396 | 106 | 3 | 16 | 402 | 24 | 414 | 0.0 | 550 |
MS.gene36106.t1 | AT1G79520 | 77.647 | 340 | 76 | 0 | 63 | 402 | 10 | 349 | 0.0 | 549 |
MS.gene36106.t1 | AT1G79520 | 77.647 | 340 | 76 | 0 | 63 | 402 | 10 | 349 | 0.0 | 549 |
MS.gene36106.t1 | AT1G16310 | 80.192 | 313 | 62 | 0 | 87 | 399 | 1 | 313 | 0.0 | 516 |
MS.gene36106.t1 | AT2G39450 | 59.524 | 378 | 139 | 4 | 22 | 398 | 25 | 389 | 1.00e-139 | 404 |
MS.gene36106.t1 | AT3G58060 | 52.874 | 348 | 158 | 5 | 58 | 401 | 59 | 404 | 2.66e-124 | 365 |
MS.gene36106.t1 | AT3G58060 | 52.874 | 348 | 158 | 5 | 58 | 401 | 59 | 404 | 2.66e-124 | 365 |
MS.gene36106.t1 | AT2G47830 | 22.648 | 287 | 197 | 8 | 123 | 389 | 84 | 365 | 2.41e-11 | 65.5 |
Find 68 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTGTGTGCTTGATTTAA+AGG | 0.123675 | 8.3:-52623298 | None:intergenic |
TTCCAATTGGATAGTGAAAA+TGG | 0.205432 | 8.3:-52621748 | None:intergenic |
AACTCACTATGATTCATTTC+AGG | 0.278686 | 8.3:-52622201 | None:intergenic |
GAAAGTTGACATATCTAATA+TGG | 0.286746 | 8.3:+52623176 | MS.gene36106:CDS |
TGTTGGCTGTCAAGTTCTAT+TGG | 0.308737 | 8.3:+52622376 | MS.gene36106:CDS |
TTTACCTCGGTAAGACTTCC+TGG | 0.313970 | 8.3:-52621170 | None:intergenic |
TTAAATCAAGCACACAATAT+TGG | 0.317732 | 8.3:+52623301 | MS.gene36106:CDS |
TGATTTAAAGGCATATCTTC+TGG | 0.354695 | 8.3:-52623286 | None:intergenic |
GTCAACTTTCCTAGAAAATC+AGG | 0.364143 | 8.3:-52623163 | None:intergenic |
GAGAATGTATCATCTCTAAT+TGG | 0.369305 | 8.3:+52623127 | MS.gene36106:CDS |
CTATGTGCTTAACCTCTTCA+TGG | 0.378933 | 8.3:-52623204 | None:intergenic |
TATACCATCATCTTGTGTTC+AGG | 0.390318 | 8.3:-52623406 | None:intergenic |
ACAAAAGCTCTTTCAACTTC+AGG | 0.412332 | 8.3:-52623355 | None:intergenic |
CACTGTACACAATTAATACA+TGG | 0.412694 | 8.3:+52623089 | MS.gene36106:CDS |
AGCAGCTAATCCAACTGAAT+TGG | 0.421069 | 8.3:-52622349 | None:intergenic |
AAAGATCCAAGAGAGAATCT+AGG | 0.424304 | 8.3:-52621676 | None:intergenic |
ATGGATACTATGACTGAAAC+AGG | 0.431125 | 8.3:+52621140 | MS.gene36106:CDS |
TGCATCAGTGATGGCAACCT+TGG | 0.440195 | 8.3:+52622011 | MS.gene36106:CDS |
TTCCACCCTAGATTCTCTCT+TGG | 0.449374 | 8.3:+52621670 | MS.gene36106:CDS |
GCATCAGTGATGGCAACCTT+GGG | 0.450148 | 8.3:+52622012 | MS.gene36106:CDS |
TTCAACTCTCACACTTTCTC+CGG | 0.462458 | 8.3:-52619046 | None:intergenic |
TGGATTAGCTGCTGCTGTGT+TGG | 0.467111 | 8.3:+52622359 | MS.gene36106:CDS |
TGTGTCAAATGCAGTTAACT+TGG | 0.467579 | 8.3:+52621589 | MS.gene36106:CDS |
TGTTAGCGGGTTTGCGAACA+AGG | 0.471217 | 8.3:-52619188 | None:intergenic |
TGCAGAATACTATAAACAAC+AGG | 0.473003 | 8.3:+52621091 | MS.gene36106:CDS |
CTTGGTACTATTTGCAGCAA+AGG | 0.479678 | 8.3:+52621607 | MS.gene36106:CDS |
GATGTTATTACCAATTCAGT+TGG | 0.495698 | 8.3:+52622339 | MS.gene36106:CDS |
ATTGGATAGTGAAAATGGTT+TGG | 0.503302 | 8.3:-52621743 | None:intergenic |
ACTGTGAGAGCATACACATT+TGG | 0.503635 | 8.3:+52623229 | MS.gene36106:CDS |
CTATTGGTGGATCGATCCAT+TGG | 0.511645 | 8.3:+52622392 | MS.gene36106:CDS |
GAGAGTGACGGCGGCGCCAC+CGG | 0.511666 | 8.3:+52619027 | MS.gene36106:CDS |
GAGATGGATGATCGCGATCA+TGG | 0.515677 | 8.3:+52622224 | MS.gene36106:CDS |
CAACAGGAGAGGCTACTTGA+AGG | 0.518298 | 8.3:+52621107 | MS.gene36106:CDS |
TTCCATGACGATGATGATGA+AGG | 0.523221 | 8.3:-52619069 | None:intergenic |
CTATACTTACTGCTGTTAGC+GGG | 0.534245 | 8.3:-52619201 | None:intergenic |
TGGCTGTCAAGTTCTATTGG+TGG | 0.535980 | 8.3:+52622379 | MS.gene36106:CDS |
AAGATCCAAGAGAGAATCTA+GGG | 0.537253 | 8.3:-52621675 | None:intergenic |
CCACGTTCCTTCACTTTCAG+CGG | 0.541046 | 8.3:+52619165 | MS.gene36106:CDS |
AACCTTCATCATCATCGTCA+TGG | 0.545988 | 8.3:+52619067 | MS.gene36106:CDS |
TATTGGTGGATCGATCCATT+GGG | 0.546329 | 8.3:+52622393 | MS.gene36106:CDS |
AACTCTCACACTTTCTCCGG+TGG | 0.552469 | 8.3:-52619043 | None:intergenic |
ACTATACTTACTGCTGTTAG+CGG | 0.554921 | 8.3:-52619202 | None:intergenic |
TGAATCATAGTGAGTTGAGA+TGG | 0.568901 | 8.3:+52622208 | MS.gene36106:CDS |
AAGTGAAGGAACGTGGTTGA+CGG | 0.568954 | 8.3:-52619158 | None:intergenic |
TGATTTCAGAGAAGCAACGC+AGG | 0.574549 | 8.3:+52621066 | MS.gene36106:intron |
GTGGTTGACGGTTATGATGA+TGG | 0.580191 | 8.3:-52619146 | None:intergenic |
ATGTATCATCTCTAATTGGA+AGG | 0.601705 | 8.3:+52623131 | MS.gene36106:CDS |
CAGGCCTGAACACAAGATGA+TGG | 0.605331 | 8.3:+52623402 | MS.gene36106:CDS |
TGGCAGGCAAATTATTGCAA+AGG | 0.608764 | 8.3:+52622056 | MS.gene36106:CDS |
AACAAGGCCGCTGAAAGTGA+AGG | 0.609652 | 8.3:-52619172 | None:intergenic |
GATGGTGATGATGATGATCA+TGG | 0.611195 | 8.3:-52619128 | None:intergenic |
ACTGTACACAATTAATACAT+GGG | 0.629973 | 8.3:+52623090 | MS.gene36106:CDS |
CTCACAATAATAGCTCCCAA+TGG | 0.632925 | 8.3:-52622408 | None:intergenic |
TAAAACATGTCGGAGAGTGA+CGG | 0.635376 | 8.3:+52619015 | None:intergenic |
GATTGTCAAAGCCTACGCGC+AGG | 0.644623 | 8.3:+52622305 | MS.gene36106:CDS |
ACTTGAAGGCTATAATGACA+TGG | 0.644642 | 8.3:+52621121 | MS.gene36106:CDS |
ATCCAAGAGAGAATCTAGGG+TGG | 0.644644 | 8.3:-52621672 | None:intergenic |
GATCAAAATCTGCAATCCCA+AGG | 0.646397 | 8.3:-52622028 | None:intergenic |
GATTTCAGAGAAGCAACGCA+GGG | 0.655531 | 8.3:+52621067 | MS.gene36106:intron |
AATATGGAATCACCATGAAG+AGG | 0.655738 | 8.3:+52623192 | MS.gene36106:CDS |
AAAACAATGATCCTGCGCGT+AGG | 0.666713 | 8.3:-52622316 | None:intergenic |
TGATGATCATGGTGATGATG+TGG | 0.670441 | 8.3:-52619117 | None:intergenic |
AATACTATAAACAACAGGAG+AGG | 0.673271 | 8.3:+52621096 | MS.gene36106:CDS |
AACTTTCCTAGAAAATCAGG+TGG | 0.675539 | 8.3:-52623160 | None:intergenic |
CCGCTGAAAGTGAAGGAACG+TGG | 0.677251 | 8.3:-52619165 | None:intergenic |
GTCATGGAAACTGAATGTGA+AGG | 0.700201 | 8.3:+52619083 | MS.gene36106:CDS |
CATTAAAATGAACTTCACAA+CGG | 0.715661 | 8.3:-52622256 | None:intergenic |
AACATGTCGGAGAGTGACGG+CGG | 0.720516 | 8.3:+52619018 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATAATATACATTATTGA+TGG | - | chr8.3:52619663-52619682 | None:intergenic | 10.0% |
!!! | TCTTATTTCTTTTTTTTTTT+TGG | + | chr8.3:52620332-52620351 | MS.gene36106:intron | 10.0% |
!! | AATCAAAACAAGAATAAAAT+AGG | - | chr8.3:52619761-52619780 | None:intergenic | 15.0% |
!! | ATCAAAACAAGAATAAAATA+GGG | - | chr8.3:52619760-52619779 | None:intergenic | 15.0% |
!! | TCAATTCAATATTAACAAAA+CGG | + | chr8.3:52620068-52620087 | MS.gene36106:intron | 15.0% |
!! | TTTAGTATAATCATATATGT+TGG | - | chr8.3:52620148-52620167 | None:intergenic | 15.0% |
!!! | TATTTCTTTTTTTTTTTTGG+CGG | + | chr8.3:52620335-52620354 | MS.gene36106:intron | 15.0% |
!!! | TGTTGAATAATTTTTATAAG+TGG | + | chr8.3:52619882-52619901 | MS.gene36106:intron | 15.0% |
!! | ACAAGATTGAATTAAAGTAA+AGG | - | chr8.3:52621002-52621021 | None:intergenic | 20.0% |
!! | AGCTATACGATTAAAAATAA+TGG | - | chr8.3:52622685-52622704 | None:intergenic | 20.0% |
!! | ATCATGTATGTAAAGAAATT+AGG | + | chr8.3:52620308-52620327 | MS.gene36106:intron | 20.0% |
!! | ATTATTTATCACCATAATTG+CGG | + | chr8.3:52621192-52621211 | MS.gene36106:intron | 20.0% |
!! | CATTAACATTAATACAACTT+CGG | - | chr8.3:52619639-52619658 | None:intergenic | 20.0% |
!! | TAACTATAAAATCCATTTAG+TGG | - | chr8.3:52622444-52622463 | None:intergenic | 20.0% |
!! | TATAGTAAAGTAAAACATGT+TGG | - | chr8.3:52620978-52620997 | None:intergenic | 20.0% |
!! | TTGAATTGAAAAGAAATTGA+TGG | - | chr8.3:52620057-52620076 | None:intergenic | 20.0% |
!!! | AACTTTAAAGTATATGCAAA+AGG | + | chr8.3:52620602-52620621 | MS.gene36106:intron | 20.0% |
!!! | ACTAGTTTTTGTCAATATAT+AGG | - | chr8.3:52621970-52621989 | None:intergenic | 20.0% |
!!! | ATACGATTAAAAATAATGGA+CGG | - | chr8.3:52622681-52622700 | None:intergenic | 20.0% |
!!! | GAATAATTTTTATAAGTGGT+TGG | + | chr8.3:52619886-52619905 | MS.gene36106:intron | 20.0% |
!!! | GCATATACTTTAAAGTTAAA+GGG | - | chr8.3:52620599-52620618 | None:intergenic | 20.0% |
!!! | TGCATATACTTTAAAGTTAA+AGG | - | chr8.3:52620600-52620619 | None:intergenic | 20.0% |
!!! | TTCTTTTTGAGAGTTTTTTT+GGG | + | chr8.3:52621037-52621056 | MS.gene36106:intron | 20.0% |
!!! | TTGCTATTATAAAAAGTAGA+TGG | - | chr8.3:52620651-52620670 | None:intergenic | 20.0% |
!!! | TTTCTTTTTGAGAGTTTTTT+TGG | + | chr8.3:52621036-52621055 | MS.gene36106:intron | 20.0% |
! | AACATTCAATTCTTGAAGAT+TGG | + | chr8.3:52622566-52622585 | MS.gene36106:intron | 25.0% |
! | ACTATCCAATTGGAAAAAAA+CGG | + | chr8.3:52621756-52621775 | MS.gene36106:CDS | 25.0% |
! | ACTGTACACAATTAATACAT+GGG | + | chr8.3:52623090-52623109 | MS.gene36106:CDS | 25.0% |
! | ATATTGTGTGCTTGATTTAA+AGG | - | chr8.3:52623301-52623320 | None:intergenic | 25.0% |
! | ATCCAAATTCCAAACATAAA+CGG | - | chr8.3:52619981-52620000 | None:intergenic | 25.0% |
! | CATTAAAATGAACTTCACAA+CGG | - | chr8.3:52622259-52622278 | None:intergenic | 25.0% |
! | CCACTAAAACATTTACAATA+TGG | + | chr8.3:52621326-52621345 | MS.gene36106:intron | 25.0% |
! | GAAAACAGAGAAAAAAAGAA+TGG | - | chr8.3:52619235-52619254 | None:intergenic | 25.0% |
! | GAAAGTTGACATATCTAATA+TGG | + | chr8.3:52623176-52623195 | MS.gene36106:CDS | 25.0% |
! | GATTTCAATTATTTGGATTG+TGG | + | chr8.3:52622543-52622562 | MS.gene36106:intron | 25.0% |
! | GGTCTTAGATTTCAATTATT+TGG | + | chr8.3:52622536-52622555 | MS.gene36106:intron | 25.0% |
! | TGGTGATAAATAATTTACCT+CGG | - | chr8.3:52621186-52621205 | None:intergenic | 25.0% |
! | TTAAATCAAGCACACAATAT+TGG | + | chr8.3:52623301-52623320 | MS.gene36106:CDS | 25.0% |
! | TTTATAGAAAGAGTCTATGT+AGG | + | chr8.3:52619599-52619618 | MS.gene36106:intron | 25.0% |
!! | ATGGTCCAAAATTTTATAAG+TGG | - | chr8.3:52620632-52620651 | None:intergenic | 25.0% |
!! | GTTGTCCACTTATAAAATTT+TGG | + | chr8.3:52620624-52620643 | MS.gene36106:intron | 25.0% |
!! | TATCACTTGTTAGTAATTTG+AGG | + | chr8.3:52620816-52620835 | MS.gene36106:intron | 25.0% |
!! | TTGATTTTGAATATACTCAC+AGG | + | chr8.3:52623383-52623402 | MS.gene36106:CDS | 25.0% |
!! | TTTTAATGATTTACTGTCGA+AGG | + | chr8.3:52622271-52622290 | MS.gene36106:CDS | 25.0% |
!!! | CCATATTGTAAATGTTTTAG+TGG | - | chr8.3:52621329-52621348 | None:intergenic | 25.0% |
!!! | CTTTTGTGTATGTAATTTGT+AGG | + | chr8.3:52619719-52619738 | MS.gene36106:intron | 25.0% |
!!! | GGATTGTATTAGTTTTAGTT+GGG | + | chr8.3:52619997-52620016 | MS.gene36106:intron | 25.0% |
!!! | TACGATTAAAAATAATGGAC+GGG | - | chr8.3:52622680-52622699 | None:intergenic | 25.0% |
!!! | TATTCTTGTTTTGATTGTGT+TGG | + | chr8.3:52619765-52619784 | MS.gene36106:intron | 25.0% |
!!! | TGGATTGTATTAGTTTTAGT+TGG | + | chr8.3:52619996-52620015 | MS.gene36106:intron | 25.0% |
!!! | TTGTTCTTTTTGTTTACTTG+AGG | + | chr8.3:52622954-52622973 | MS.gene36106:intron | 25.0% |
!!! | TTGTTTTTTCCGTTTATGTT+TGG | + | chr8.3:52619969-52619988 | MS.gene36106:intron | 25.0% |
!!! | TTTTTTTTTTGCAGTCTTCT+TGG | + | chr8.3:52619917-52619936 | MS.gene36106:intron | 25.0% |
AAAAAATGAAGACTTACCAC+TGG | - | chr8.3:52621788-52621807 | None:intergenic | 30.0% | |
AACAGACAAGATTACAAGTA+AGG | - | chr8.3:52622147-52622166 | None:intergenic | 30.0% | |
AACAGAGAAAAAAAGAATGG+AGG | - | chr8.3:52619232-52619251 | None:intergenic | 30.0% | |
AACTCACTATGATTCATTTC+AGG | - | chr8.3:52622204-52622223 | None:intergenic | 30.0% | |
AAGTATCATTCATGAGTGTT+GGG | + | chr8.3:52619847-52619866 | MS.gene36106:intron | 30.0% | |
AATACTATAAACAACAGGAG+AGG | + | chr8.3:52621096-52621115 | MS.gene36106:CDS | 30.0% | |
ACAGAGAAAAAAAGAATGGA+GGG | - | chr8.3:52619231-52619250 | None:intergenic | 30.0% | |
AGTTCATTACTACCACTAAA+TGG | + | chr8.3:52622429-52622448 | MS.gene36106:intron | 30.0% | |
ATAGCATAGACTAACGAAAT+AGG | + | chr8.3:52622908-52622927 | MS.gene36106:intron | 30.0% | |
ATATCATATAGGCACGTAAT+TGG | - | chr8.3:52619807-52619826 | None:intergenic | 30.0% | |
ATGTATCATCTCTAATTGGA+AGG | + | chr8.3:52623131-52623150 | MS.gene36106:CDS | 30.0% | |
ATTGGATAGTGAAAATGGTT+TGG | - | chr8.3:52621746-52621765 | None:intergenic | 30.0% | |
CACTGTACACAATTAATACA+TGG | + | chr8.3:52623089-52623108 | MS.gene36106:CDS | 30.0% | |
GAGAATGTATCATCTCTAAT+TGG | + | chr8.3:52623127-52623146 | MS.gene36106:CDS | 30.0% | |
GAGTAAACTAGTAATTGTCT+GGG | + | chr8.3:52622619-52622638 | MS.gene36106:intron | 30.0% | |
GATGTTATTACCAATTCAGT+TGG | + | chr8.3:52622339-52622358 | MS.gene36106:CDS | 30.0% | |
GCGACTATACTATATCATAT+AGG | - | chr8.3:52619818-52619837 | None:intergenic | 30.0% | |
GTATATTCTGTTACTCACAA+GGG | - | chr8.3:52620035-52620054 | None:intergenic | 30.0% | |
TGACAAAAACTAGTTATGCA+GGG | + | chr8.3:52621976-52621995 | MS.gene36106:intron | 30.0% | |
TGAGTGAAAATGATAGTCAT+TGG | + | chr8.3:52621834-52621853 | MS.gene36106:intron | 30.0% | |
TGCAGAATACTATAAACAAC+AGG | + | chr8.3:52621091-52621110 | MS.gene36106:CDS | 30.0% | |
TTAAAGTTAAAGGGTCTTAG+AGG | - | chr8.3:52620590-52620609 | None:intergenic | 30.0% | |
TTCCAATTGGATAGTGAAAA+TGG | - | chr8.3:52621751-52621770 | None:intergenic | 30.0% | |
TTGACAAAAACTAGTTATGC+AGG | + | chr8.3:52621975-52621994 | MS.gene36106:intron | 30.0% | |
! | AAAGTATCATTCATGAGTGT+TGG | + | chr8.3:52619846-52619865 | MS.gene36106:intron | 30.0% |
! | AACCATTTTCACTATCCAAT+TGG | + | chr8.3:52621746-52621765 | MS.gene36106:CDS | 30.0% |
! | TAATCATATATGTTGGTGTC+AGG | - | chr8.3:52620141-52620160 | None:intergenic | 30.0% |
! | TGATTTAAAGGCATATCTTC+TGG | - | chr8.3:52623289-52623308 | None:intergenic | 30.0% |
! | TTAACAAAACGGACACTTTT+CGG | + | chr8.3:52620079-52620098 | MS.gene36106:intron | 30.0% |
! | TTCCGTTTATGTTTGGAATT+TGG | + | chr8.3:52619976-52619995 | MS.gene36106:intron | 30.0% |
! | TTTTAAACAATCTCGACCAT+CGG | + | chr8.3:52622729-52622748 | MS.gene36106:intron | 30.0% |
! | TTTTCGGATTATGTATGTGT+CGG | + | chr8.3:52620095-52620114 | MS.gene36106:intron | 30.0% |
!! | ATAAGGCAGTTGATTTTTGA+AGG | + | chr8.3:52622757-52622776 | MS.gene36106:intron | 30.0% |
!! | TAAGGCAGTTGATTTTTGAA+GGG | + | chr8.3:52622758-52622777 | MS.gene36106:intron | 30.0% |
!! | TGCTCATTATTTTGTTGAAG+TGG | + | chr8.3:52623252-52623271 | MS.gene36106:CDS | 30.0% |
!!! | AAAATGGTTTGGTGTTTTCA+TGG | - | chr8.3:52621735-52621754 | None:intergenic | 30.0% |
!!! | TCTTTTTTTTTTTTGGCGGT+CGG | + | chr8.3:52620339-52620358 | MS.gene36106:intron | 30.0% |
AAAGATCCAAGAGAGAATCT+AGG | - | chr8.3:52621679-52621698 | None:intergenic | 35.0% | |
AAATGCAGATAGCAGAAAAC+TGG | - | chr8.3:52621928-52621947 | None:intergenic | 35.0% | |
AACTTTCCTAGAAAATCAGG+TGG | - | chr8.3:52623163-52623182 | None:intergenic | 35.0% | |
AAGATCCAAGAGAGAATCTA+GGG | - | chr8.3:52621678-52621697 | None:intergenic | 35.0% | |
AATATGGAATCACCATGAAG+AGG | + | chr8.3:52623192-52623211 | MS.gene36106:CDS | 35.0% | |
AATCGTTAGAGACTACATGA+GGG | - | chr8.3:52622824-52622843 | None:intergenic | 35.0% | |
AATTGCACATAATTCCTCGA+GGG | + | chr8.3:52622515-52622534 | MS.gene36106:intron | 35.0% | |
ACAAAAGCTCTTTCAACTTC+AGG | - | chr8.3:52623358-52623377 | None:intergenic | 35.0% | |
ACTATACTTACTGCTGTTAG+CGG | - | chr8.3:52619205-52619224 | None:intergenic | 35.0% | |
ACTTGAAGGCTATAATGACA+TGG | + | chr8.3:52621121-52621140 | MS.gene36106:CDS | 35.0% | |
ATCAATAACACGACTGAAAC+AGG | + | chr8.3:52621237-52621256 | MS.gene36106:intron | 35.0% | |
ATGGATACTATGACTGAAAC+AGG | + | chr8.3:52621140-52621159 | MS.gene36106:CDS | 35.0% | |
CGAGTAAACTAGTAATTGTC+TGG | + | chr8.3:52622618-52622637 | MS.gene36106:intron | 35.0% | |
GACACATTTCAAAAACCAGT+TGG | - | chr8.3:52620934-52620953 | None:intergenic | 35.0% | |
GAGAGAAGAATTTGTAACCA+AGG | + | chr8.3:52620843-52620862 | MS.gene36106:intron | 35.0% | |
GAGGAATTATGTGCAATTCA+AGG | - | chr8.3:52622513-52622532 | None:intergenic | 35.0% | |
GCACAGTTGTAGATAATACT+TGG | + | chr8.3:52620894-52620913 | MS.gene36106:intron | 35.0% | |
GCTTCATACTTCATAGCAAA+AGG | + | chr8.3:52620224-52620243 | MS.gene36106:intron | 35.0% | |
GGTATATTCTGTTACTCACA+AGG | - | chr8.3:52620036-52620055 | None:intergenic | 35.0% | |
GTCAACTTTCCTAGAAAATC+AGG | - | chr8.3:52623166-52623185 | None:intergenic | 35.0% | |
TATACCATCATCTTGTGTTC+AGG | - | chr8.3:52623409-52623428 | None:intergenic | 35.0% | |
TCAATCTTGTCTTTGTGAAC+TGG | + | chr8.3:52621012-52621031 | MS.gene36106:intron | 35.0% | |
TGTGTCAAATGCAGTTAACT+TGG | + | chr8.3:52621589-52621608 | MS.gene36106:CDS | 35.0% | |
! | CCACATTTGCTACAAAATCA+AGG | - | chr8.3:52621265-52621284 | None:intergenic | 35.0% |
! | CCTTGATTTTGTAGCAAATG+TGG | + | chr8.3:52621262-52621281 | MS.gene36106:intron | 35.0% |
! | GATTATTGCGTGTTATTGCA+AGG | - | chr8.3:52622654-52622673 | None:intergenic | 35.0% |
! | TGAATCATAGTGAGTTGAGA+TGG | + | chr8.3:52622208-52622227 | MS.gene36106:CDS | 35.0% |
! | TTCTCTCTTGGATCTTTTGT+CGG | + | chr8.3:52621682-52621701 | MS.gene36106:CDS | 35.0% |
!! | GCAAAAAATGAAAAGCACCT+TGG | - | chr8.3:52620863-52620882 | None:intergenic | 35.0% |
!! | TGGTGATGGTGAGAATATTT+AGG | + | chr8.3:52619937-52619956 | MS.gene36106:intron | 35.0% |
!!! | AGATAGTCTCGTTTTCAAGT+AGG | - | chr8.3:52620721-52620740 | None:intergenic | 35.0% |
!!! | CATTGTTTTTGCATCAGTGA+TGG | + | chr8.3:52622002-52622021 | MS.gene36106:CDS | 35.0% |
!!! | CTTTTTTTTTTTTGGCGGTC+GGG | + | chr8.3:52620340-52620359 | MS.gene36106:intron | 35.0% |
!!! | TCGTTTTCAAGTAGGTAGTT+CGG | - | chr8.3:52620713-52620732 | None:intergenic | 35.0% |
!!! | TCTTGTTTTGATTGTGTTGG+TGG | + | chr8.3:52619768-52619787 | MS.gene36106:intron | 35.0% |
!!! | TGCATCCGTTTTTTTCCAAT+TGG | - | chr8.3:52621764-52621783 | None:intergenic | 35.0% |
!!! | TTTTAACCTCCAAGAGTGTT+TGG | + | chr8.3:52621804-52621823 | MS.gene36106:intron | 35.0% |
!!! | TTTTTTTTTTTTGGCGGTCG+GGG | + | chr8.3:52620341-52620360 | MS.gene36106:intron | 35.0% |
AACAGAAATTGCTTCCGCAT+TGG | - | chr8.3:52621288-52621307 | None:intergenic | 40.0% | |
AACCTTCATCATCATCGTCA+TGG | + | chr8.3:52619067-52619086 | MS.gene36106:CDS | 40.0% | |
AAGGGAATATGCTCCAGTTT+AGG | - | chr8.3:52620557-52620576 | None:intergenic | 40.0% | |
ACAACTTCGGTATGAAGTGT+TGG | - | chr8.3:52619626-52619645 | None:intergenic | 40.0% | |
ACAAGTAGTCGCTAATGTCT+TGG | - | chr8.3:52622938-52622957 | None:intergenic | 40.0% | |
AGCAACTAGCAAAAAGTGAG+AGG | + | chr8.3:52621555-52621574 | MS.gene36106:CDS | 40.0% | |
AGCAGCTAATCCAACTGAAT+TGG | - | chr8.3:52622352-52622371 | None:intergenic | 40.0% | |
AGGGAATATGCTCCAGTTTA+GGG | - | chr8.3:52620556-52620575 | None:intergenic | 40.0% | |
CAAGTAGTCGCTAATGTCTT+GGG | - | chr8.3:52622937-52622956 | None:intergenic | 40.0% | |
CAATCGTTAGAGACTACATG+AGG | - | chr8.3:52622825-52622844 | None:intergenic | 40.0% | |
CATCAATCACCAAACACTCT+TGG | - | chr8.3:52621816-52621835 | None:intergenic | 40.0% | |
CTATACTTACTGCTGTTAGC+GGG | - | chr8.3:52619204-52619223 | None:intergenic | 40.0% | |
CTATGAATGACACTAACACG+TGG | - | chr8.3:52619350-52619369 | None:intergenic | 40.0% | |
CTATGTGCTTAACCTCTTCA+TGG | - | chr8.3:52623207-52623226 | None:intergenic | 40.0% | |
CTCACAATAATAGCTCCCAA+TGG | - | chr8.3:52622411-52622430 | None:intergenic | 40.0% | |
CTTAGAGGCTGATCTTCAAA+GGG | - | chr8.3:52620575-52620594 | None:intergenic | 40.0% | |
CTTGGTACTATTTGCAGCAA+AGG | + | chr8.3:52621607-52621626 | MS.gene36106:CDS | 40.0% | |
GAATTGCACATAATTCCTCG+AGG | + | chr8.3:52622514-52622533 | MS.gene36106:intron | 40.0% | |
GACTACATGAGGGATAAAGT+AGG | - | chr8.3:52622814-52622833 | None:intergenic | 40.0% | |
GATCAAAATCTGCAATCCCA+AGG | - | chr8.3:52622031-52622050 | None:intergenic | 40.0% | |
GTCATGGAAACTGAATGTGA+AGG | + | chr8.3:52619083-52619102 | MS.gene36106:CDS | 40.0% | |
TAGGCACGTAATTGGTGAAA+AGG | - | chr8.3:52619799-52619818 | None:intergenic | 40.0% | |
TCTTAGAGGCTGATCTTCAA+AGG | - | chr8.3:52620576-52620595 | None:intergenic | 40.0% | |
TGCATAATACATGCAACGTC+CGG | - | chr8.3:52620375-52620394 | None:intergenic | 40.0% | |
TGGCAGGCAAATTATTGCAA+AGG | + | chr8.3:52622056-52622075 | MS.gene36106:CDS | 40.0% | |
TTCAACTCTCACACTTTCTC+CGG | - | chr8.3:52619049-52619068 | None:intergenic | 40.0% | |
! | ACTAGTAATTGTCTGGGACA+CGG | + | chr8.3:52622625-52622644 | MS.gene36106:intron | 40.0% |
! | ACTGTGAGAGCATACACATT+TGG | + | chr8.3:52623229-52623248 | MS.gene36106:CDS | 40.0% |
! | AGAGAGAGTGTGTAAGTTCA+TGG | + | chr8.3:52622985-52623004 | MS.gene36106:intron | 40.0% |
! | ATTGAAATCTAAGACCCTCG+AGG | - | chr8.3:52622532-52622551 | None:intergenic | 40.0% |
! | CACGTGTTAGTGTCATTCAT+AGG | + | chr8.3:52619348-52619367 | MS.gene36106:intron | 40.0% |
! | GATGGTGATGATGATGATCA+TGG | - | chr8.3:52619131-52619150 | None:intergenic | 40.0% |
! | TATTGGTGGATCGATCCATT+GGG | + | chr8.3:52622393-52622412 | MS.gene36106:CDS | 40.0% |
! | TCGTGTTATTGATGCCACAT+TGG | - | chr8.3:52621230-52621249 | None:intergenic | 40.0% |
! | TCTCTCTTGGATCTTTTGTC+GGG | + | chr8.3:52621683-52621702 | MS.gene36106:CDS | 40.0% |
! | TGATGATCATGGTGATGATG+TGG | - | chr8.3:52619120-52619139 | None:intergenic | 40.0% |
! | TGTTGGCTGTCAAGTTCTAT+TGG | + | chr8.3:52622376-52622395 | MS.gene36106:CDS | 40.0% |
! | TTCCATGACGATGATGATGA+AGG | - | chr8.3:52619072-52619091 | None:intergenic | 40.0% |
! | TTTTGCAGTCTTCTTGGTGA+TGG | + | chr8.3:52619923-52619942 | MS.gene36106:intron | 40.0% |
! | TTTTGTCGGGGTTCATATTG+TGG | + | chr8.3:52621696-52621715 | MS.gene36106:CDS | 40.0% |
!! | ACTGAAACAGGACTTTTTCC+AGG | + | chr8.3:52621152-52621171 | MS.gene36106:CDS | 40.0% |
!! | ATCATTCATGAGTGTTGGGT+TGG | + | chr8.3:52619851-52619870 | MS.gene36106:intron | 40.0% |
!! | CGTTGCTTCTCTGAAATCAA+AGG | - | chr8.3:52621065-52621084 | None:intergenic | 40.0% |
!! | TTGCAGATTTTGATCGAGTC+TGG | + | chr8.3:52622036-52622055 | MS.gene36106:CDS | 40.0% |
!!! | GTTTGGTGTTTTCATGGCAT+TGG | - | chr8.3:52621729-52621748 | None:intergenic | 40.0% |
AAAAAAACGGATGCAGCCAG+TGG | + | chr8.3:52621769-52621788 | MS.gene36106:CDS | 45.0% | |
AAAACAATGATCCTGCGCGT+AGG | - | chr8.3:52622319-52622338 | None:intergenic | 45.0% | |
AACTGCCTTATCTAAGCCGA+TGG | - | chr8.3:52622748-52622767 | None:intergenic | 45.0% | |
AAGTGAAGGAACGTGGTTGA+CGG | - | chr8.3:52619161-52619180 | None:intergenic | 45.0% | |
ATCAATGTCCATGTCGTGTC+CGG | + | chr8.3:52620194-52620213 | MS.gene36106:intron | 45.0% | |
ATCATTGTCGTGTCTGGTGT+CGG | + | chr8.3:52619690-52619709 | MS.gene36106:intron | 45.0% | |
ATCCAAGAGAGAATCTAGGG+TGG | - | chr8.3:52621675-52621694 | None:intergenic | 45.0% | |
CAATCACCAAACACTCTTGG+AGG | - | chr8.3:52621813-52621832 | None:intergenic | 45.0% | |
CATAATACATGCAACGTCCG+GGG | - | chr8.3:52620373-52620392 | None:intergenic | 45.0% | |
CTGAAGATGTGTCCTTGTGT+CGG | + | chr8.3:52619260-52619279 | MS.gene36106:intron | 45.0% | |
GAAGTATGAAGCACAGACAC+CGG | - | chr8.3:52620216-52620235 | None:intergenic | 45.0% | |
GATTTCAGAGAAGCAACGCA+GGG | + | chr8.3:52621067-52621086 | MS.gene36106:intron | 45.0% | |
GCATAATACATGCAACGTCC+GGG | - | chr8.3:52620374-52620393 | None:intergenic | 45.0% | |
GGGAATATGCTCCAGTTTAG+GGG | - | chr8.3:52620555-52620574 | None:intergenic | 45.0% | |
GTGGTTGACGGTTATGATGA+TGG | - | chr8.3:52619149-52619168 | None:intergenic | 45.0% | |
TATCACCATAATTGCGGTCG+CGG | + | chr8.3:52621198-52621217 | MS.gene36106:intron | 45.0% | |
TGAGCTTAGCTCAGTTGGAA+TGG | - | chr8.3:52620402-52620421 | None:intergenic | 45.0% | |
TGATTTCAGAGAAGCAACGC+AGG | + | chr8.3:52621066-52621085 | MS.gene36106:intron | 45.0% | |
TGGCTGTCAAGTTCTATTGG+TGG | + | chr8.3:52622379-52622398 | MS.gene36106:CDS | 45.0% | |
TGTAGCAAATGTGGCCAATG+CGG | + | chr8.3:52621271-52621290 | MS.gene36106:intron | 45.0% | |
TTCACCATCATTGTCGTGTC+TGG | + | chr8.3:52619684-52619703 | MS.gene36106:intron | 45.0% | |
TTCCACCCTAGATTCTCTCT+TGG | + | chr8.3:52621670-52621689 | MS.gene36106:CDS | 45.0% | |
TTTACCTCGGTAAGACTTCC+TGG | - | chr8.3:52621173-52621192 | None:intergenic | 45.0% | |
! | ACAGCACCACCTGATTTTCT+AGG | + | chr8.3:52623154-52623173 | MS.gene36106:CDS | 45.0% |
! | CTATTGGTGGATCGATCCAT+TGG | + | chr8.3:52622392-52622411 | MS.gene36106:CDS | 45.0% |
! | CTCTCTTGGATCTTTTGTCG+GGG | + | chr8.3:52621684-52621703 | MS.gene36106:CDS | 45.0% |
! | GAGTGTTTTCACCCCTAAAC+TGG | + | chr8.3:52620541-52620560 | MS.gene36106:intron | 45.0% |
! | GATCTAGCTTCTGAACCAAC+TGG | + | chr8.3:52620916-52620935 | MS.gene36106:intron | 45.0% |
! | TTTTCCAGGAAGTCTTACCG+AGG | + | chr8.3:52621166-52621185 | MS.gene36106:CDS | 45.0% |
!! | AGATTTTGATCGAGTCTGGC+AGG | + | chr8.3:52622040-52622059 | MS.gene36106:CDS | 45.0% |
AACAACCGCGACCGCAATTA+TGG | - | chr8.3:52621206-52621225 | None:intergenic | 50.0% | |
AACAAGGCCGCTGAAAGTGA+AGG | - | chr8.3:52619175-52619194 | None:intergenic | 50.0% | |
AACTCTCACACTTTCTCCGG+TGG | - | chr8.3:52619046-52619065 | None:intergenic | 50.0% | |
CAACAGGAGAGGCTACTTGA+AGG | + | chr8.3:52621107-52621126 | MS.gene36106:CDS | 50.0% | |
CAGGCCTGAACACAAGATGA+TGG | + | chr8.3:52623402-52623421 | MS.gene36106:CDS | 50.0% | |
CCACGTTCCTTCACTTTCAG+CGG | + | chr8.3:52619165-52619184 | MS.gene36106:CDS | 50.0% | |
GACACCAGACACGACAATGA+TGG | - | chr8.3:52619691-52619710 | None:intergenic | 50.0% | |
GAGATGGATGATCGCGATCA+TGG | + | chr8.3:52622224-52622243 | MS.gene36106:CDS | 50.0% | |
GCATCAGTGATGGCAACCTT+GGG | + | chr8.3:52622012-52622031 | MS.gene36106:CDS | 50.0% | |
TGCATCAGTGATGGCAACCT+TGG | + | chr8.3:52622011-52622030 | MS.gene36106:CDS | 50.0% | |
!! | CTCGACCATCGGCTTAGATA+AGG | + | chr8.3:52622740-52622759 | MS.gene36106:intron | 50.0% |
!! | TGGATTAGCTGCTGCTGTGT+TGG | + | chr8.3:52622359-52622378 | MS.gene36106:CDS | 50.0% |
!! | TGTTAGCGGGTTTGCGAACA+AGG | - | chr8.3:52619191-52619210 | None:intergenic | 50.0% |
CCAACTGAGCTAAGCTCACG+AGG | + | chr8.3:52620404-52620423 | MS.gene36106:intron | 55.0% | |
CCGCTGAAAGTGAAGGAACG+TGG | - | chr8.3:52619168-52619187 | None:intergenic | 55.0% | |
CCTCGTGAGCTTAGCTCAGT+TGG | - | chr8.3:52620407-52620426 | None:intergenic | 55.0% | |
GATTGTCAAAGCCTACGCGC+AGG | + | chr8.3:52622305-52622324 | MS.gene36106:CDS | 55.0% | |
GGTCGCGGTTGTTACCAATG+TGG | + | chr8.3:52621213-52621232 | MS.gene36106:intron | 55.0% | |
TGAGCTAAGCTCACGAGGAC+AGG | + | chr8.3:52620409-52620428 | MS.gene36106:intron | 55.0% | |
! | CCTTGTGTCGGTGTCTGACA+CGG | + | chr8.3:52619272-52619291 | MS.gene36106:intron | 55.0% |
CACAGACACCGGACACGACA+TGG | - | chr8.3:52620205-52620224 | None:intergenic | 60.0% | |
CCGTGTCAGACACCGACACA+AGG | - | chr8.3:52619275-52619294 | None:intergenic | 60.0% | |
GGCGGTCGGGGTTTGAACCC+CGG | + | chr8.3:52620353-52620372 | MS.gene36106:intron | 70.0% | |
GAGAGTGACGGCGGCGCCAC+CGG | + | chr8.3:52619027-52619046 | MS.gene36106:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 52619021 | 52623429 | 52619021 | ID=MS.gene36106 |
chr8.3 | mRNA | 52619021 | 52623429 | 52619021 | ID=MS.gene36106.t1;Parent=MS.gene36106 |
chr8.3 | exon | 52619021 | 52619213 | 52619021 | ID=MS.gene36106.t1.exon1;Parent=MS.gene36106.t1 |
chr8.3 | CDS | 52619021 | 52619213 | 52619021 | ID=cds.MS.gene36106.t1;Parent=MS.gene36106.t1 |
chr8.3 | exon | 52621075 | 52621187 | 52621075 | ID=MS.gene36106.t1.exon2;Parent=MS.gene36106.t1 |
chr8.3 | CDS | 52621075 | 52621187 | 52621075 | ID=cds.MS.gene36106.t1;Parent=MS.gene36106.t1 |
chr8.3 | exon | 52621545 | 52621790 | 52621545 | ID=MS.gene36106.t1.exon3;Parent=MS.gene36106.t1 |
chr8.3 | CDS | 52621545 | 52621790 | 52621545 | ID=cds.MS.gene36106.t1;Parent=MS.gene36106.t1 |
chr8.3 | exon | 52621997 | 52622077 | 52621997 | ID=MS.gene36106.t1.exon4;Parent=MS.gene36106.t1 |
chr8.3 | CDS | 52621997 | 52622077 | 52621997 | ID=cds.MS.gene36106.t1;Parent=MS.gene36106.t1 |
chr8.3 | exon | 52622195 | 52622425 | 52622195 | ID=MS.gene36106.t1.exon5;Parent=MS.gene36106.t1 |
chr8.3 | CDS | 52622195 | 52622425 | 52622195 | ID=cds.MS.gene36106.t1;Parent=MS.gene36106.t1 |
chr8.3 | exon | 52623085 | 52623429 | 52623085 | ID=MS.gene36106.t1.exon6;Parent=MS.gene36106.t1 |
chr8.3 | CDS | 52623085 | 52623429 | 52623085 | ID=cds.MS.gene36106.t1;Parent=MS.gene36106.t1 |
Gene Sequence |
Protein sequence |