Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37486.t1 | XP_013461781.1 | 98.2 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 9.50E-241 | 842.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37486.t1 | Q5S1U6 | 26.0 | 393 | 238 | 10 | 16 | 386 | 41 | 402 | 1.8e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37486.t1 | A0A072V2D3 | 98.2 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 6.8e-241 | 842.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene37486 | -0.824326 | 8.58E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene37486 | 0.810777 | 9.74E-51 | -1.69E-46 |
| MS.gene052641 | MS.gene37486 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene055505 | MS.gene37486 | 0.86277 | 4.01E-64 | -1.69E-46 |
| MS.gene058503 | MS.gene37486 | 0.810034 | 1.41E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene37486 | 0.80296 | 4.38E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene37486 | 0.817645 | 2.96E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene37486 | 0.836379 | 9.69E-57 | -1.69E-46 |
| MS.gene060852 | MS.gene37486 | 0.836406 | 9.54E-57 | -1.69E-46 |
| MS.gene06121 | MS.gene37486 | 0.800998 | 1.11E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37486.t1 | MTR_3g103090 | 98.194 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 0.0 | 899 |
| MS.gene37486.t1 | MTR_3g103090 | 98.015 | 403 | 8 | 0 | 1 | 403 | 1 | 403 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37486.t1 | AT1G27760 | 57.812 | 448 | 175 | 5 | 1 | 442 | 1 | 440 | 0.0 | 513 |
| MS.gene37486.t1 | AT1G27760 | 57.366 | 448 | 173 | 6 | 1 | 442 | 1 | 436 | 1.36e-177 | 504 |
| MS.gene37486.t1 | AT1G27760 | 58.095 | 420 | 158 | 6 | 29 | 442 | 18 | 425 | 7.99e-176 | 499 |
Find 71 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATACATTGGAACCTAATT+TGG | 0.073567 | 3.4:-90698755 | None:intergenic |
| CCAATCTTCATTGAAATTTC+AGG | 0.167869 | 3.4:-90700310 | None:intergenic |
| GCCTTGTTCAAAACTGAATT+TGG | 0.179293 | 3.4:-90700850 | None:intergenic |
| CTGACTATTAAGATCTTTCT+TGG | 0.273029 | 3.4:-90700118 | None:intergenic |
| ATATTCTTACAAGGATTAAA+AGG | 0.280325 | 3.4:+90700039 | MS.gene37486:CDS |
| ACTCTTGAAAGCATCAATTA+TGG | 0.282875 | 3.4:-90697834 | None:intergenic |
| ACCGCTGCTTATTGAGTAAC+TGG | 0.290403 | 3.4:-90700879 | None:intergenic |
| TCATTCCATTGCAGGTTGTT+TGG | 0.310885 | 3.4:+90698437 | MS.gene37486:intron |
| CGGCCATTATTCAGTCAATA+TGG | 0.334875 | 3.4:+90701119 | MS.gene37486:CDS |
| ATCTAGAAGACCGGATAAAT+AGG | 0.347265 | 3.4:-90699875 | None:intergenic |
| TGAAGAATCTGTTACCCCTT+TGG | 0.370160 | 3.4:+90698500 | MS.gene37486:CDS |
| GAACCTGTTCAGAGATATCT+TGG | 0.374329 | 3.4:+90700143 | MS.gene37486:CDS |
| CATACATTGGAACCTAATTT+GGG | 0.377504 | 3.4:-90698754 | None:intergenic |
| AATTTCATCAAGCACTTCCT+TGG | 0.377807 | 3.4:+90700486 | MS.gene37486:CDS |
| AGCATCAATTATGGCTGAAA+AGG | 0.383011 | 3.4:-90697825 | None:intergenic |
| CGAGTGATCCATCCCAAATT+AGG | 0.396381 | 3.4:+90698742 | MS.gene37486:CDS |
| ATCAAGCACTTCCTTGGAGG+GGG | 0.412529 | 3.4:+90700492 | MS.gene37486:CDS |
| AGATGCAAGAGTTATCTCTT+TGG | 0.428662 | 3.4:-90698317 | None:intergenic |
| CCTGAAATTTCAATGAAGAT+TGG | 0.428816 | 3.4:+90700310 | MS.gene37486:CDS |
| CATCCATATTGACTGAATAA+TGG | 0.431054 | 3.4:-90701122 | None:intergenic |
| AATCCAAGATATCTCTGAAC+AGG | 0.433115 | 3.4:-90700146 | None:intergenic |
| TCTGTGGAGGCTGGTGGAAA+AGG | 0.441263 | 3.4:+90700090 | MS.gene37486:CDS |
| AGTTCAATAGCCTATTTATC+CGG | 0.449992 | 3.4:+90699865 | MS.gene37486:intron |
| TGTATAGTTGCTGGACTGCT+TGG | 0.454319 | 3.4:+90698654 | MS.gene37486:intron |
| AATGGCGAACATAGAATGTC+TGG | 0.477792 | 3.4:+90700700 | MS.gene37486:CDS |
| GCAGTTATTAATTGAGCAGA+AGG | 0.482620 | 3.4:-90698928 | None:intergenic |
| TCTGATCTCATGAATGTGTC+TGG | 0.484091 | 3.4:+90697618 | MS.gene37486:CDS |
| TTCATCAAGCACTTCCTTGG+AGG | 0.494607 | 3.4:+90700489 | MS.gene37486:CDS |
| CTTATTGAGTAACTGGGTCC+TGG | 0.494718 | 3.4:-90700872 | None:intergenic |
| TAGCAAGAGATTCATCCAAA+GGG | 0.495141 | 3.4:-90698515 | None:intergenic |
| ATCACTTGCATTCTTAGCCT+CGG | 0.503479 | 3.4:-90699980 | None:intergenic |
| GGGGTTCATTAAACATATGC+AGG | 0.506623 | 3.4:+90700512 | MS.gene37486:CDS |
| AGAAACTAAAGACATCTTGT+AGG | 0.508490 | 3.4:-90700654 | None:intergenic |
| GGTTGTTTGGCCTTGACAGT+TGG | 0.510973 | 3.4:+90698450 | MS.gene37486:intron |
| GTCGTGGTCTCAAATGATAC+AGG | 0.513312 | 3.4:+90700354 | MS.gene37486:CDS |
| TCATCAAGCACTTCCTTGGA+GGG | 0.513702 | 3.4:+90700490 | MS.gene37486:CDS |
| AGAAGAAACAGAGCGATCAA+TGG | 0.515869 | 3.4:+90698708 | MS.gene37486:CDS |
| GTCTTCTTTATCTAGAAGAC+CGG | 0.516274 | 3.4:-90699884 | None:intergenic |
| AATTGCTGCTGGTGAAGCAC+TGG | 0.528366 | 3.4:+90699918 | MS.gene37486:CDS |
| AATCAACAGGGCAGGAACTT+CGG | 0.529037 | 3.4:+90701099 | MS.gene37486:intron |
| TAGAATGTCTGGTGGTGAAA+AGG | 0.530016 | 3.4:+90700711 | MS.gene37486:CDS |
| CATCAAGCACTTCCTTGGAG+GGG | 0.533991 | 3.4:+90700491 | MS.gene37486:CDS |
| AATCTTTCTGTGGAGGCTGG+TGG | 0.542256 | 3.4:+90700084 | MS.gene37486:CDS |
| TGAAGCTGAATTCAAAACAT+TGG | 0.544268 | 3.4:+90698995 | MS.gene37486:CDS |
| GAAAGTTACATATTCTTACA+AGG | 0.545343 | 3.4:+90700030 | MS.gene37486:CDS |
| TCAAGCACTTCCTTGGAGGG+GGG | 0.547072 | 3.4:+90700493 | MS.gene37486:CDS |
| ACTCTTGCATCTCAAGCCAT+TGG | 0.553154 | 3.4:+90698328 | MS.gene37486:CDS |
| CATTGGAACCTAATTTGGGA+TGG | 0.553532 | 3.4:-90698750 | None:intergenic |
| GACACATTCATGAGATCAGA+TGG | 0.557531 | 3.4:-90697615 | None:intergenic |
| CTAGCAAGAGATTCATCCAA+AGG | 0.563507 | 3.4:-90698516 | None:intergenic |
| TAACTGCTGTGGTGTCTGCA+TGG | 0.566660 | 3.4:+90698944 | MS.gene37486:CDS |
| GTCTTCTAGATAAAGAAGAC+AGG | 0.574234 | 3.4:+90699887 | MS.gene37486:CDS |
| TGAATTCAAAACATTGGCAA+AGG | 0.585766 | 3.4:+90699001 | MS.gene37486:CDS |
| GAAATTTCAATGAAGATTGG+TGG | 0.588523 | 3.4:+90700313 | MS.gene37486:CDS |
| AAGAATATGTAACTTTCCTG+TGG | 0.588647 | 3.4:-90700024 | None:intergenic |
| TAAGCAGCGGTTACAATCTG+AGG | 0.591489 | 3.4:+90700891 | MS.gene37486:CDS |
| TCAGATTGCCTACGGTAGAG+AGG | 0.593998 | 3.4:-90698975 | None:intergenic |
| AGAAAGATCTTAATAGTCAG+AGG | 0.594407 | 3.4:+90700121 | MS.gene37486:CDS |
| ATTCAGCTTCAGATTGCCTA+CGG | 0.596364 | 3.4:-90698983 | None:intergenic |
| AGGTCAGTAAGAATTGCTGC+TGG | 0.620402 | 3.4:+90699907 | MS.gene37486:CDS |
| ATCACTACATCCAACTGTCA+AGG | 0.621289 | 3.4:-90698460 | None:intergenic |
| AGCGATCAATGGACATAATG+TGG | 0.622561 | 3.4:+90698719 | MS.gene37486:CDS |
| TCAAGAAGAGAGTAAACCAC+AGG | 0.630235 | 3.4:+90700008 | MS.gene37486:CDS |
| TGCTCAATTAATAACTGCTG+TGG | 0.636366 | 3.4:+90698933 | MS.gene37486:CDS |
| TTTATTTAAGGGGCACCACG+AGG | 0.637987 | 3.4:+90697795 | MS.gene37486:intron |
| CCCAGTTACTCAATAAGCAG+CGG | 0.664075 | 3.4:+90700878 | MS.gene37486:CDS |
| CCGCTGCTTATTGAGTAACT+GGG | 0.664335 | 3.4:-90700878 | None:intergenic |
| TTATTTAAGGGGCACCACGA+GGG | 0.671059 | 3.4:+90697796 | MS.gene37486:intron |
| AGCAAGAGATTCATCCAAAG+GGG | 0.679651 | 3.4:-90698514 | None:intergenic |
| ATTCTCTACAGACATCGTCG+TGG | 0.723009 | 3.4:+90700338 | MS.gene37486:CDS |
| GGCGAACATAGAATGTCTGG+TGG | 0.743950 | 3.4:+90700703 | MS.gene37486:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAACTTGATTATTTTTT+AGG | + | chr3.4:90697911-90697930 | MS.gene37486:intron | 10.0% |
| !! | ACATACATTATATATGAAAA+AGG | - | chr3.4:90698375-90698394 | None:intergenic | 15.0% |
| !! | ACTAAATTATTAGGAAAAAA+AGG | + | chr3.4:90699605-90699624 | MS.gene37486:intron | 15.0% |
| !! | CTAAATTATTAGGAAAAAAA+GGG | + | chr3.4:90699606-90699625 | MS.gene37486:intron | 15.0% |
| !! | TATAACATCAAAAACATAAA+AGG | - | chr3.4:90698609-90698628 | None:intergenic | 15.0% |
| !! | TCAAATAATAGTAACAATAA+GGG | - | chr3.4:90700209-90700228 | None:intergenic | 15.0% |
| !!! | ATCAATATTTAACTTAATGA+TGG | - | chr3.4:90697733-90697752 | None:intergenic | 15.0% |
| !!! | CAAAATAAGTTGAAAAATAT+CGG | - | chr3.4:90699506-90699525 | None:intergenic | 15.0% |
| !!! | CAACTTATTTTGATAATTTA+AGG | + | chr3.4:90699514-90699533 | MS.gene37486:intron | 15.0% |
| !!! | TAAATATTGATGATTATTGA+AGG | + | chr3.4:90697742-90697761 | MS.gene37486:intron | 15.0% |
| !!! | TATTTTTTAGGTTTTTGTTT+TGG | + | chr3.4:90697923-90697942 | MS.gene37486:intron | 15.0% |
| !!! | TTTGCTTATATTTAAGATTT+AGG | - | chr3.4:90699632-90699651 | None:intergenic | 15.0% |
| !! | ACATAATTTCACACTTATTA+AGG | - | chr3.4:90699691-90699710 | None:intergenic | 20.0% |
| !! | ATATTCTTACAAGGATTAAA+AGG | + | chr3.4:90700039-90700058 | MS.gene37486:CDS | 20.0% |
| !! | CTCAAATAATAGTAACAATA+AGG | - | chr3.4:90700210-90700229 | None:intergenic | 20.0% |
| !! | TAAATAAATGAAAGAAAGCA+AGG | - | chr3.4:90700384-90700403 | None:intergenic | 20.0% |
| !! | TTCCTGTTGAATTTATTTAA+GGG | + | chr3.4:90697784-90697803 | MS.gene37486:intron | 20.0% |
| !! | TTTCCTGTTGAATTTATTTA+AGG | + | chr3.4:90697783-90697802 | MS.gene37486:intron | 20.0% |
| !!! | AAGAAAAAGTATCTAAACAA+TGG | + | chr3.4:90700682-90700701 | MS.gene37486:CDS | 20.0% |
| !!! | ACTTTTTAAAAATGAAAGCA+TGG | - | chr3.4:90699230-90699249 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGATACTTTTTCT+TGG | - | chr3.4:90700683-90700702 | None:intergenic | 20.0% |
| !!! | CATTCTTACTATATTTTGTT+AGG | + | chr3.4:90700918-90700937 | MS.gene37486:intron | 20.0% |
| !!! | TAAGGTTTAAATTAGAGTTT+TGG | + | chr3.4:90699532-90699551 | MS.gene37486:intron | 20.0% |
| !!! | TGTATTTTTACTTATAGTAG+AGG | + | chr3.4:90699708-90699727 | MS.gene37486:intron | 20.0% |
| !!! | TTGTTTAGATACTTTTTCTT+GGG | - | chr3.4:90700682-90700701 | None:intergenic | 20.0% |
| !!! | TTTAGTCAAAATTTTACCAA+TGG | - | chr3.4:90698347-90698366 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAATAATTTAGTC+TGG | - | chr3.4:90699604-90699623 | None:intergenic | 20.0% |
| ! | AAAAACATAAAAGGAGAACA+GGG | - | chr3.4:90698600-90698619 | None:intergenic | 25.0% |
| ! | AAAACAAATAAATCACAGCA+TGG | - | chr3.4:90698229-90698248 | None:intergenic | 25.0% |
| ! | AATAAAAAAGGGATCAAAGA+AGG | + | chr3.4:90698288-90698307 | MS.gene37486:CDS | 25.0% |
| ! | AATTTCACACTTATTAAGGA+TGG | - | chr3.4:90699687-90699706 | None:intergenic | 25.0% |
| ! | AGCAACAACAAAATATAAGT+GGG | - | chr3.4:90699472-90699491 | None:intergenic | 25.0% |
| ! | AGGAATACAAATCTATATGT+AGG | - | chr3.4:90699792-90699811 | None:intergenic | 25.0% |
| ! | ATTAAATTTCATTCCATTGC+AGG | + | chr3.4:90698429-90698448 | MS.gene37486:intron | 25.0% |
| ! | GAAAGTTACATATTCTTACA+AGG | + | chr3.4:90700030-90700049 | MS.gene37486:CDS | 25.0% |
| ! | GGAAAATAAAATCAATAAGC+TGG | - | chr3.4:90699841-90699860 | None:intergenic | 25.0% |
| ! | TAAATAAAGGGAAGACAAAT+GGG | - | chr3.4:90698868-90698887 | None:intergenic | 25.0% |
| ! | TAATTAAGTGATTTAAGCAG+TGG | - | chr3.4:90699162-90699181 | None:intergenic | 25.0% |
| ! | TACAAATCTATATGTAGGAT+AGG | - | chr3.4:90699787-90699806 | None:intergenic | 25.0% |
| ! | TCAAATATGTCAATTCAAAC+AGG | + | chr3.4:90698156-90698175 | MS.gene37486:intron | 25.0% |
| ! | TCCTGTTGAATTTATTTAAG+GGG | + | chr3.4:90697785-90697804 | MS.gene37486:intron | 25.0% |
| ! | TGCTAGAAGTAAAAATGTTT+CGG | + | chr3.4:90698533-90698552 | MS.gene37486:CDS | 25.0% |
| ! | TGTCTTGCTTCAATAAAAAA+GGG | + | chr3.4:90698277-90698296 | MS.gene37486:CDS | 25.0% |
| ! | TTAAAGACATACATTACACA+AGG | - | chr3.4:90698182-90698201 | None:intergenic | 25.0% |
| ! | TTGATGCATTAGATGAAAAA+AGG | + | chr3.4:90697688-90697707 | MS.gene37486:CDS | 25.0% |
| !! | ATATTGATGATTATTGAAGG+TGG | + | chr3.4:90697745-90697764 | MS.gene37486:intron | 25.0% |
| !! | TTGATCAATTTGAAACTGTT+TGG | + | chr3.4:90699249-90699268 | MS.gene37486:intron | 25.0% |
| !!! | AGATATCTTGGATTTTTTTG+AGG | + | chr3.4:90700155-90700174 | MS.gene37486:CDS | 25.0% |
| !!! | ATTTTAACAGATGCATACAT+TGG | - | chr3.4:90698770-90698789 | None:intergenic | 25.0% |
| !!! | TTTGTTCCTTTTAATTTGAC+TGG | + | chr3.4:90701062-90701081 | MS.gene37486:intron | 25.0% |
| AAATAAAGGGAAGACAAATG+GGG | - | chr3.4:90698867-90698886 | None:intergenic | 30.0% | |
| AAATAGGCTATTGAACTGAA+TGG | - | chr3.4:90699862-90699881 | None:intergenic | 30.0% | |
| AAATGCTACTGTACATCATA+CGG | - | chr3.4:90700979-90700998 | None:intergenic | 30.0% | |
| AAGAATATGTAACTTTCCTG+TGG | - | chr3.4:90700027-90700046 | None:intergenic | 30.0% | |
| AATCTATATGTAGGATAGGT+AGG | - | chr3.4:90699783-90699802 | None:intergenic | 30.0% | |
| ACAACTAGGTGCTAAAAAAA+AGG | - | chr3.4:90700552-90700571 | None:intergenic | 30.0% | |
| ACTTATGAATAAGAGTCAGA+AGG | + | chr3.4:90700244-90700263 | MS.gene37486:intron | 30.0% | |
| AGAAACTAAAGACATCTTGT+AGG | - | chr3.4:90700657-90700676 | None:intergenic | 30.0% | |
| AGAAAGATCTTAATAGTCAG+AGG | + | chr3.4:90700121-90700140 | MS.gene37486:CDS | 30.0% | |
| AGGAATCCAGTCAAATTAAA+AGG | - | chr3.4:90701071-90701090 | None:intergenic | 30.0% | |
| AGTTCAATAGCCTATTTATC+CGG | + | chr3.4:90699865-90699884 | MS.gene37486:intron | 30.0% | |
| ATCTATATGTAGGATAGGTA+GGG | - | chr3.4:90699782-90699801 | None:intergenic | 30.0% | |
| CAAAAACATAAAAGGAGAAC+AGG | - | chr3.4:90698601-90698620 | None:intergenic | 30.0% | |
| CAGCAACAACAAAATATAAG+TGG | - | chr3.4:90699473-90699492 | None:intergenic | 30.0% | |
| CATACATTGGAACCTAATTT+GGG | - | chr3.4:90698757-90698776 | None:intergenic | 30.0% | |
| CCAATCTTCATTGAAATTTC+AGG | - | chr3.4:90700313-90700332 | None:intergenic | 30.0% | |
| CCTGAAATTTCAATGAAGAT+TGG | + | chr3.4:90700310-90700329 | MS.gene37486:CDS | 30.0% | |
| CTGACTATTAAGATCTTTCT+TGG | - | chr3.4:90700121-90700140 | None:intergenic | 30.0% | |
| CTGTCTTGCTTCAATAAAAA+AGG | + | chr3.4:90698276-90698295 | MS.gene37486:CDS | 30.0% | |
| GAAATTTCAATGAAGATTGG+TGG | + | chr3.4:90700313-90700332 | MS.gene37486:CDS | 30.0% | |
| GTAAATAAAGGGAAGACAAA+TGG | - | chr3.4:90698869-90698888 | None:intergenic | 30.0% | |
| TATATGAGTTACATCGTCTA+TGG | - | chr3.4:90699194-90699213 | None:intergenic | 30.0% | |
| TCAATGCAAAAATCTTTCTG+TGG | + | chr3.4:90700074-90700093 | MS.gene37486:CDS | 30.0% | |
| TCCTAATAATTTAGTCTGGA+GGG | - | chr3.4:90699600-90699619 | None:intergenic | 30.0% | |
| TCCTTATTGTTGAATCAACA+GGG | + | chr3.4:90701087-90701106 | MS.gene37486:intron | 30.0% | |
| TGAAGCTGAATTCAAAACAT+TGG | + | chr3.4:90698995-90699014 | MS.gene37486:CDS | 30.0% | |
| TGAATTCAAAACATTGGCAA+AGG | + | chr3.4:90699001-90699020 | MS.gene37486:CDS | 30.0% | |
| TGGGATTACATTTCTCTTAA+GGG | - | chr3.4:90699453-90699472 | None:intergenic | 30.0% | |
| TTCATTAAACATATGCAGGT+TGG | + | chr3.4:90700516-90700535 | MS.gene37486:intron | 30.0% | |
| TTCCTAATAATTTAGTCTGG+AGG | - | chr3.4:90699601-90699620 | None:intergenic | 30.0% | |
| TTCCTTATTGTTGAATCAAC+AGG | + | chr3.4:90701086-90701105 | MS.gene37486:intron | 30.0% | |
| ! | CATCCATATTGACTGAATAA+TGG | - | chr3.4:90701125-90701144 | None:intergenic | 30.0% |
| ! | TGATCTTTTATTGTCATGCT+AGG | + | chr3.4:90700276-90700295 | MS.gene37486:intron | 30.0% |
| ! | TTTTTCATCCCTCTTTCTAT+GGG | - | chr3.4:90699363-90699382 | None:intergenic | 30.0% |
| !! | ACTCTTGAAAGCATCAATTA+TGG | - | chr3.4:90697837-90697856 | None:intergenic | 30.0% |
| !! | CTATAATCACTTTTGTTGGA+GGG | + | chr3.4:90698677-90698696 | MS.gene37486:CDS | 30.0% |
| !! | GTGTTTGTTATGTTGTGTTT+AGG | + | chr3.4:90697519-90697538 | MS.gene37486:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr3.4:90698040-90698059 | MS.gene37486:intron | 30.0% |
| !! | TCATTTTTGTGTATAGTTGC+TGG | + | chr3.4:90698645-90698664 | MS.gene37486:intron | 30.0% |
| !! | TTGGCTATAATCACTTTTGT+TGG | + | chr3.4:90698673-90698692 | MS.gene37486:CDS | 30.0% |
| !!! | ACCAAATTCAGTTTTGAACA+AGG | + | chr3.4:90700849-90700868 | MS.gene37486:CDS | 30.0% |
| !!! | ATTTTTTTGAGGTATGTTGG+TGG | + | chr3.4:90700166-90700185 | MS.gene37486:intron | 30.0% |
| !!! | GGTACAATTTTTAGAGTAAC+AGG | + | chr3.4:90697948-90697967 | MS.gene37486:intron | 30.0% |
| !!! | TGGATTTTTTTGAGGTATGT+TGG | + | chr3.4:90700163-90700182 | MS.gene37486:intron | 30.0% |
| !!! | TTTTAGGTTTTTGTTTTGGC+TGG | + | chr3.4:90697927-90697946 | MS.gene37486:intron | 30.0% |
| !!! | TTTTTTCATCCCTCTTTCTA+TGG | - | chr3.4:90699364-90699383 | None:intergenic | 30.0% |
| AAAGAGTGAATAAGCTGAAG+CGG | - | chr3.4:90698891-90698910 | None:intergenic | 35.0% | |
| AAATCAATAAGCTGGAACCA+AGG | - | chr3.4:90699833-90699852 | None:intergenic | 35.0% | |
| AAGAGGGTCAGAAAAACAAA+AGG | - | chr3.4:90700608-90700627 | None:intergenic | 35.0% | |
| AAGCTGAAGCGGTAAATAAA+GGG | - | chr3.4:90698880-90698899 | None:intergenic | 35.0% | |
| AATCCAAGATATCTCTGAAC+AGG | - | chr3.4:90700149-90700168 | None:intergenic | 35.0% | |
| AATTTCATCAAGCACTTCCT+TGG | + | chr3.4:90700486-90700505 | MS.gene37486:CDS | 35.0% | |
| AGATGCAAGAGTTATCTCTT+TGG | - | chr3.4:90698320-90698339 | None:intergenic | 35.0% | |
| AGCATCAATTATGGCTGAAA+AGG | - | chr3.4:90697828-90697847 | None:intergenic | 35.0% | |
| ATCAGCAGATAACAAGTGAA+AGG | - | chr3.4:90700793-90700812 | None:intergenic | 35.0% | |
| ATCTAGAAGACCGGATAAAT+AGG | - | chr3.4:90699878-90699897 | None:intergenic | 35.0% | |
| ATGCAAAAATCTTTCTGTGG+AGG | + | chr3.4:90700077-90700096 | MS.gene37486:CDS | 35.0% | |
| ATGGGTAAACGTAAGTTTCT+AGG | + | chr3.4:90697418-90697437 | MS.gene37486:intron | 35.0% | |
| CTTCAGCTTATTCACTCTTT+AGG | + | chr3.4:90698891-90698910 | MS.gene37486:intron | 35.0% | |
| GAAGTAAAAATGTTTCGGTG+AGG | + | chr3.4:90698538-90698557 | MS.gene37486:intron | 35.0% | |
| GCAGTTATTAATTGAGCAGA+AGG | - | chr3.4:90698931-90698950 | None:intergenic | 35.0% | |
| GCATACATTGGAACCTAATT+TGG | - | chr3.4:90698758-90698777 | None:intergenic | 35.0% | |
| GCCCCTTAAATAAATTCAAC+AGG | - | chr3.4:90697789-90697808 | None:intergenic | 35.0% | |
| GGCAATCTATTCTATAGACT+AGG | + | chr3.4:90699553-90699572 | MS.gene37486:intron | 35.0% | |
| GTCGATATTATACCTCTTAC+AGG | - | chr3.4:90699101-90699120 | None:intergenic | 35.0% | |
| GTCTTCTAGATAAAGAAGAC+AGG | + | chr3.4:90699887-90699906 | MS.gene37486:CDS | 35.0% | |
| GTCTTCTTTATCTAGAAGAC+CGG | - | chr3.4:90699887-90699906 | None:intergenic | 35.0% | |
| GTGGGATTACATTTCTCTTA+AGG | - | chr3.4:90699454-90699473 | None:intergenic | 35.0% | |
| TAAGCTGAAGCGGTAAATAA+AGG | - | chr3.4:90698881-90698900 | None:intergenic | 35.0% | |
| TAGATAAAATGTACTCCCTC+TGG | - | chr3.4:90699734-90699753 | None:intergenic | 35.0% | |
| TAGCAAGAGATTCATCCAAA+GGG | - | chr3.4:90698518-90698537 | None:intergenic | 35.0% | |
| TCCCTCCAGACTAAATTATT+AGG | + | chr3.4:90699596-90699615 | MS.gene37486:intron | 35.0% | |
| TCTATATGTAGGATAGGTAG+GGG | - | chr3.4:90699781-90699800 | None:intergenic | 35.0% | |
| TGCTCAATTAATAACTGCTG+TGG | + | chr3.4:90698933-90698952 | MS.gene37486:CDS | 35.0% | |
| TGGGTAAACGTAAGTTTCTA+GGG | + | chr3.4:90697419-90697438 | MS.gene37486:intron | 35.0% | |
| ! | ACAAGCTTTTGACAACAACT+AGG | - | chr3.4:90700566-90700585 | None:intergenic | 35.0% |
| ! | CTTTTATTGTCATGCTAGGA+TGG | + | chr3.4:90700280-90700299 | MS.gene37486:intron | 35.0% |
| ! | GAATAACACTTCACGCATTT+TGG | + | chr3.4:90699332-90699351 | MS.gene37486:intron | 35.0% |
| ! | GCCTTGTTCAAAACTGAATT+TGG | - | chr3.4:90700853-90700872 | None:intergenic | 35.0% |
| ! | GTTTGGAGTTTCACACAATA+GGG | + | chr3.4:90699266-90699285 | MS.gene37486:intron | 35.0% |
| ! | TATCGATAAATTTTCGACCG+AGG | + | chr3.4:90699963-90699982 | MS.gene37486:CDS | 35.0% |
| ! | TGTTTGGAGTTTCACACAAT+AGG | + | chr3.4:90699265-90699284 | MS.gene37486:intron | 35.0% |
| !! | GCTATAATCACTTTTGTTGG+AGG | + | chr3.4:90698676-90698695 | MS.gene37486:CDS | 35.0% |
| !!! | CTGGCTCTAATTTTTGAGAT+TGG | + | chr3.4:90699937-90699956 | MS.gene37486:CDS | 35.0% |
| AAAAATCTTTCTGTGGAGGC+TGG | + | chr3.4:90700081-90700100 | MS.gene37486:CDS | 40.0% | |
| AAGTCGTTGTCCTAATACCA+CGG | - | chr3.4:90700634-90700653 | None:intergenic | 40.0% | |
| AATGGCGAACATAGAATGTC+TGG | + | chr3.4:90700700-90700719 | MS.gene37486:CDS | 40.0% | |
| ACAGGCAATTTCAACTCACT+AGG | + | chr3.4:90697966-90697985 | MS.gene37486:intron | 40.0% | |
| AGAAGAAACAGAGCGATCAA+TGG | + | chr3.4:90698708-90698727 | MS.gene37486:CDS | 40.0% | |
| AGCAAGAGATTCATCCAAAG+GGG | - | chr3.4:90698517-90698536 | None:intergenic | 40.0% | |
| AGCGATCAATGGACATAATG+TGG | + | chr3.4:90698719-90698738 | MS.gene37486:CDS | 40.0% | |
| ATCACTACATCCAACTGTCA+AGG | - | chr3.4:90698463-90698482 | None:intergenic | 40.0% | |
| ATCACTTGCATTCTTAGCCT+CGG | - | chr3.4:90699983-90700002 | None:intergenic | 40.0% | |
| ATTCAGCTTCAGATTGCCTA+CGG | - | chr3.4:90698986-90699005 | None:intergenic | 40.0% | |
| CAGGCAATTTCAACTCACTA+GGG | + | chr3.4:90697967-90697986 | MS.gene37486:intron | 40.0% | |
| CATTGGAACCTAATTTGGGA+TGG | - | chr3.4:90698753-90698772 | None:intergenic | 40.0% | |
| CGGCCATTATTCAGTCAATA+TGG | + | chr3.4:90701119-90701138 | MS.gene37486:CDS | 40.0% | |
| CTAGCAAGAGATTCATCCAA+AGG | - | chr3.4:90698519-90698538 | None:intergenic | 40.0% | |
| CTCAATGCCATAGATGATGT+AGG | + | chr3.4:90699135-90699154 | MS.gene37486:intron | 40.0% | |
| GAACCTGTTCAGAGATATCT+TGG | + | chr3.4:90700143-90700162 | MS.gene37486:CDS | 40.0% | |
| GACACATTCATGAGATCAGA+TGG | - | chr3.4:90697618-90697637 | None:intergenic | 40.0% | |
| GGGGTTCATTAAACATATGC+AGG | + | chr3.4:90700512-90700531 | MS.gene37486:CDS | 40.0% | |
| TACTTATAGTAGAGGCCAGA+GGG | + | chr3.4:90699716-90699735 | MS.gene37486:intron | 40.0% | |
| TATTGTTGAATCAACAGGGC+AGG | + | chr3.4:90701091-90701110 | MS.gene37486:intron | 40.0% | |
| TCAAGAAGAGAGTAAACCAC+AGG | + | chr3.4:90700008-90700027 | MS.gene37486:CDS | 40.0% | |
| TCATTCCATTGCAGGTTGTT+TGG | + | chr3.4:90698437-90698456 | MS.gene37486:intron | 40.0% | |
| TCCTCTGCACGTAAAAGAAT+AGG | - | chr3.4:90700819-90700838 | None:intergenic | 40.0% | |
| TCTACACTTGTGAGACTGTT+CGG | - | chr3.4:90698131-90698150 | None:intergenic | 40.0% | |
| TCTGATCTCATGAATGTGTC+TGG | + | chr3.4:90697618-90697637 | MS.gene37486:CDS | 40.0% | |
| TGAAGAATCTGTTACCCCTT+TGG | + | chr3.4:90698500-90698519 | MS.gene37486:CDS | 40.0% | |
| TGGACTAACCCATAGAAAGA+GGG | + | chr3.4:90699352-90699371 | MS.gene37486:intron | 40.0% | |
| TTACTTATAGTAGAGGCCAG+AGG | + | chr3.4:90699715-90699734 | MS.gene37486:intron | 40.0% | |
| TTGGACTAACCCATAGAAAG+AGG | + | chr3.4:90699351-90699370 | MS.gene37486:intron | 40.0% | |
| ! | ACCTATTCTTTTACGTGCAG+AGG | + | chr3.4:90700815-90700834 | MS.gene37486:intron | 40.0% |
| ! | TAAGTCTTGTGATGTCTGTG+AGG | + | chr3.4:90700749-90700768 | MS.gene37486:intron | 40.0% |
| ! | TAGAATGTCTGGTGGTGAAA+AGG | + | chr3.4:90700711-90700730 | MS.gene37486:CDS | 40.0% |
| ! | TGCGTGAAGTGTTATTCTAG+TGG | - | chr3.4:90699329-90699348 | None:intergenic | 40.0% |
| !! | GCCCTGTTGATTCAACAATA+AGG | - | chr3.4:90701091-90701110 | None:intergenic | 40.0% |
| !! | TTCCTTGTGTAGCTGTTTCT+TGG | + | chr3.4:90699807-90699826 | MS.gene37486:intron | 40.0% |
| !!! | ATTCAGTTTTGAACAAGGCC+AGG | + | chr3.4:90700854-90700873 | MS.gene37486:CDS | 40.0% |
| AATCAACAGGGCAGGAACTT+CGG | + | chr3.4:90701099-90701118 | MS.gene37486:intron | 45.0% | |
| ACCGCTGCTTATTGAGTAAC+TGG | - | chr3.4:90700882-90700901 | None:intergenic | 45.0% | |
| ACTCTTGCATCTCAAGCCAT+TGG | + | chr3.4:90698328-90698347 | MS.gene37486:CDS | 45.0% | |
| AGGTCAGTAAGAATTGCTGC+TGG | + | chr3.4:90699907-90699926 | MS.gene37486:CDS | 45.0% | |
| ATGTCTGTGAGGACTTTCAC+TGG | + | chr3.4:90700760-90700779 | MS.gene37486:intron | 45.0% | |
| ATTCTCTACAGACATCGTCG+TGG | + | chr3.4:90700338-90700357 | MS.gene37486:CDS | 45.0% | |
| CAGTGGTCCTACATCATCTA+TGG | - | chr3.4:90699145-90699164 | None:intergenic | 45.0% | |
| CCATTCATGCTTCCTGTAAG+AGG | + | chr3.4:90699086-90699105 | MS.gene37486:intron | 45.0% | |
| CCCAGTTACTCAATAAGCAG+CGG | + | chr3.4:90700878-90700897 | MS.gene37486:CDS | 45.0% | |
| CCGCTGCTTATTGAGTAACT+GGG | - | chr3.4:90700881-90700900 | None:intergenic | 45.0% | |
| CGAGTGATCCATCCCAAATT+AGG | + | chr3.4:90698742-90698761 | MS.gene37486:CDS | 45.0% | |
| CTACACTTGTGAGACTGTTC+GGG | - | chr3.4:90698130-90698149 | None:intergenic | 45.0% | |
| CTTATTGAGTAACTGGGTCC+TGG | - | chr3.4:90700875-90700894 | None:intergenic | 45.0% | |
| GAGTTACATCGTCTATGGAC+TGG | - | chr3.4:90699189-90699208 | None:intergenic | 45.0% | |
| GCATAAATGACAGCGAAGCA+AGG | - | chr3.4:90701005-90701024 | None:intergenic | 45.0% | |
| GTCGTGGTCTCAAATGATAC+AGG | + | chr3.4:90700354-90700373 | MS.gene37486:CDS | 45.0% | |
| TAAGCAGCGGTTACAATCTG+AGG | + | chr3.4:90700891-90700910 | MS.gene37486:CDS | 45.0% | |
| TCATCAAGCACTTCCTTGGA+GGG | + | chr3.4:90700490-90700509 | MS.gene37486:CDS | 45.0% | |
| TGTATAGTTGCTGGACTGCT+TGG | + | chr3.4:90698654-90698673 | MS.gene37486:intron | 45.0% | |
| TTCATCAAGCACTTCCTTGG+AGG | + | chr3.4:90700489-90700508 | MS.gene37486:CDS | 45.0% | |
| ! | CCTCTTACAGGAAGCATGAA+TGG | - | chr3.4:90699089-90699108 | None:intergenic | 45.0% |
| ! | TCTTTTCTCCTCTCTACCGT+AGG | + | chr3.4:90698967-90698986 | MS.gene37486:CDS | 45.0% |
| !! | CAACTCACTAGGGCATTGTT+TGG | + | chr3.4:90697977-90697996 | MS.gene37486:intron | 45.0% |
| !! | TTATTTAAGGGGCACCACGA+GGG | + | chr3.4:90697796-90697815 | MS.gene37486:intron | 45.0% |
| !! | TTTATTTAAGGGGCACCACG+AGG | + | chr3.4:90697795-90697814 | MS.gene37486:intron | 45.0% |
| !!! | TGAAAAGGCATTTTCCCTCG+TGG | - | chr3.4:90697813-90697832 | None:intergenic | 45.0% |
| AATCTTTCTGTGGAGGCTGG+TGG | + | chr3.4:90700084-90700103 | MS.gene37486:CDS | 50.0% | |
| AATTGCTGCTGGTGAAGCAC+TGG | + | chr3.4:90699918-90699937 | MS.gene37486:CDS | 50.0% | |
| ATCAAGCACTTCCTTGGAGG+GGG | + | chr3.4:90700492-90700511 | MS.gene37486:CDS | 50.0% | |
| CAAGGCCAAACAACCTGCAA+TGG | - | chr3.4:90698445-90698464 | None:intergenic | 50.0% | |
| CATCAAGCACTTCCTTGGAG+GGG | + | chr3.4:90700491-90700510 | MS.gene37486:CDS | 50.0% | |
| CCTAATACCACGGAGGAAGA+GGG | - | chr3.4:90700624-90700643 | None:intergenic | 50.0% | |
| GGCCAAGAAACAGCTACACA+AGG | - | chr3.4:90699812-90699831 | None:intergenic | 50.0% | |
| GGCGAACATAGAATGTCTGG+TGG | + | chr3.4:90700703-90700722 | MS.gene37486:CDS | 50.0% | |
| GTTTAATGAACCCCCCTCCA+AGG | - | chr3.4:90700506-90700525 | None:intergenic | 50.0% | |
| TAACTGCTGTGGTGTCTGCA+TGG | + | chr3.4:90698944-90698963 | MS.gene37486:CDS | 50.0% | |
| TCAGATTGCCTACGGTAGAG+AGG | - | chr3.4:90698978-90698997 | None:intergenic | 50.0% | |
| TCCTAATACCACGGAGGAAG+AGG | - | chr3.4:90700625-90700644 | None:intergenic | 50.0% | |
| TCGTTGTCCTAATACCACGG+AGG | - | chr3.4:90700631-90700650 | None:intergenic | 50.0% | |
| !! | GGTTGTTTGGCCTTGACAGT+TGG | + | chr3.4:90698450-90698469 | MS.gene37486:intron | 50.0% |
| !! | GTGTAGCTGTTTCTTGGCCT+TGG | + | chr3.4:90699813-90699832 | MS.gene37486:intron | 50.0% |
| CCCTCTTCCTCCGTGGTATT+AGG | + | chr3.4:90700621-90700640 | MS.gene37486:intron | 55.0% | |
| TCAAGCACTTCCTTGGAGGG+GGG | + | chr3.4:90700493-90700512 | MS.gene37486:CDS | 55.0% | |
| TCTGTGGAGGCTGGTGGAAA+AGG | + | chr3.4:90700090-90700109 | MS.gene37486:CDS | 55.0% | |
| TTTCTGACCCTCTTCCTCCG+TGG | + | chr3.4:90700614-90700633 | MS.gene37486:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90697418 | 90701152 | 90697418 | ID=MS.gene37486 |
| chr3.4 | mRNA | 90697418 | 90701152 | 90697418 | ID=MS.gene37486.t1;Parent=MS.gene37486 |
| chr3.4 | exon | 90697418 | 90697427 | 90697418 | ID=MS.gene37486.t1.exon1;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90697418 | 90697427 | 90697418 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90697541 | 90697709 | 90697541 | ID=MS.gene37486.t1.exon2;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90697541 | 90697709 | 90697541 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90697805 | 90697885 | 90697805 | ID=MS.gene37486.t1.exon3;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90697805 | 90697885 | 90697805 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90698255 | 90698349 | 90698255 | ID=MS.gene37486.t1.exon4;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90698255 | 90698349 | 90698255 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90698451 | 90698554 | 90698451 | ID=MS.gene37486.t1.exon5;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90698451 | 90698554 | 90698451 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90698661 | 90698771 | 90698661 | ID=MS.gene37486.t1.exon6;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90698661 | 90698771 | 90698661 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90698913 | 90699022 | 90698913 | ID=MS.gene37486.t1.exon7;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90698913 | 90699022 | 90698913 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90699867 | 90700176 | 90699867 | ID=MS.gene37486.t1.exon8;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90699867 | 90700176 | 90699867 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90700298 | 90700375 | 90700298 | ID=MS.gene37486.t1.exon9;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90700298 | 90700375 | 90700298 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90700483 | 90700533 | 90700483 | ID=MS.gene37486.t1.exon10;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90700483 | 90700533 | 90700483 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90700643 | 90700732 | 90700643 | ID=MS.gene37486.t1.exon11;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90700643 | 90700732 | 90700643 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90700835 | 90700912 | 90700835 | ID=MS.gene37486.t1.exon12;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90700835 | 90700912 | 90700835 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| chr3.4 | exon | 90701108 | 90701152 | 90701108 | ID=MS.gene37486.t1.exon13;Parent=MS.gene37486.t1 |
| chr3.4 | CDS | 90701108 | 90701152 | 90701108 | ID=cds.MS.gene37486.t1;Parent=MS.gene37486.t1 |
| Gene Sequence |
| Protein sequence |
