Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37786.t1 | XP_003615860.2 | 71.9 | 499 | 128 | 1 | 1 | 487 | 51 | 549 | 5.40E-213 | 750.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37786.t1 | Q6Q3H3 | 48.6 | 500 | 238 | 4 | 1 | 487 | 64 | 557 | 1.1e-137 | 491.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37786.t1 | G7JZP2 | 71.9 | 499 | 128 | 1 | 1 | 487 | 51 | 549 | 3.9e-213 | 750.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene77594 | MS.gene37786 | PPI |
MS.gene37786 | MS.gene045736 | PPI |
MS.gene37786 | MS.gene42723 | PPI |
MS.gene038985 | MS.gene37786 | PPI |
MS.gene066310 | MS.gene37786 | PPI |
MS.gene069726 | MS.gene37786 | PPI |
MS.gene038982 | MS.gene37786 | PPI |
MS.gene066316 | MS.gene37786 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37786.t1 | MTR_5g073260 | 73.038 | 497 | 122 | 1 | 3 | 487 | 56 | 552 | 0.0 | 771 |
MS.gene37786.t1 | MTR_3g464190 | 72.345 | 499 | 126 | 1 | 1 | 487 | 59 | 557 | 0.0 | 764 |
MS.gene37786.t1 | MTR_5g073200 | 71.944 | 499 | 128 | 1 | 1 | 487 | 51 | 549 | 0.0 | 760 |
MS.gene37786.t1 | MTR_5g094620 | 68.537 | 499 | 125 | 2 | 1 | 487 | 59 | 537 | 0.0 | 720 |
MS.gene37786.t1 | MTR_4g048460 | 64.529 | 499 | 164 | 2 | 1 | 487 | 64 | 561 | 0.0 | 661 |
MS.gene37786.t1 | MTR_6g008560 | 62.777 | 497 | 172 | 3 | 3 | 487 | 62 | 557 | 0.0 | 657 |
MS.gene37786.t1 | MTR_5g062230 | 62.124 | 499 | 176 | 2 | 1 | 487 | 56 | 553 | 0.0 | 646 |
MS.gene37786.t1 | MTR_6g039440 | 61.122 | 499 | 181 | 2 | 1 | 487 | 56 | 553 | 0.0 | 638 |
MS.gene37786.t1 | MTR_4g081460 | 52.894 | 501 | 221 | 3 | 1 | 487 | 63 | 562 | 0.0 | 546 |
MS.gene37786.t1 | MTR_4g048460 | 65.174 | 402 | 127 | 2 | 1 | 390 | 64 | 464 | 0.0 | 521 |
MS.gene37786.t1 | MTR_6g008560 | 60.349 | 401 | 147 | 2 | 99 | 487 | 1 | 401 | 2.06e-178 | 506 |
MS.gene37786.t1 | MTR_8g007515 | 43.058 | 497 | 257 | 9 | 11 | 487 | 66 | 556 | 2.56e-139 | 412 |
MS.gene37786.t1 | MTR_2g081980 | 43.117 | 494 | 262 | 7 | 11 | 487 | 66 | 557 | 2.14e-137 | 407 |
MS.gene37786.t1 | MTR_2g082010 | 41.036 | 502 | 279 | 6 | 1 | 487 | 69 | 568 | 5.61e-135 | 402 |
MS.gene37786.t1 | MTR_2g082060 | 40.891 | 494 | 262 | 8 | 11 | 487 | 73 | 553 | 7.96e-126 | 378 |
MS.gene37786.t1 | MTR_2g082050 | 38.235 | 476 | 246 | 8 | 13 | 485 | 27 | 457 | 2.38e-112 | 340 |
MS.gene37786.t1 | MTR_4g019550 | 37.602 | 492 | 285 | 7 | 11 | 487 | 74 | 558 | 5.73e-109 | 334 |
MS.gene37786.t1 | MTR_4g045810 | 33.539 | 486 | 309 | 3 | 13 | 485 | 95 | 579 | 1.68e-88 | 282 |
MS.gene37786.t1 | MTR_2g089120 | 33.267 | 502 | 292 | 10 | 9 | 487 | 84 | 565 | 8.88e-87 | 277 |
MS.gene37786.t1 | MTR_2g064425 | 33.800 | 500 | 310 | 6 | 1 | 486 | 93 | 585 | 9.90e-86 | 275 |
MS.gene37786.t1 | MTR_5g094530 | 63.158 | 209 | 52 | 3 | 109 | 315 | 1 | 186 | 2.53e-85 | 261 |
MS.gene37786.t1 | MTR_8g057020 | 31.400 | 500 | 323 | 5 | 1 | 486 | 95 | 588 | 5.43e-82 | 265 |
MS.gene37786.t1 | MTR_4g092020 | 32.932 | 498 | 306 | 8 | 7 | 485 | 81 | 569 | 1.60e-79 | 258 |
MS.gene37786.t1 | MTR_2g089130 | 32.415 | 472 | 293 | 7 | 9 | 465 | 84 | 544 | 4.95e-79 | 257 |
MS.gene37786.t1 | MTR_2g064425 | 32.200 | 500 | 303 | 7 | 1 | 486 | 93 | 570 | 1.42e-78 | 256 |
MS.gene37786.t1 | MTR_4g092010 | 30.285 | 492 | 313 | 7 | 11 | 483 | 76 | 556 | 3.63e-76 | 249 |
MS.gene37786.t1 | MTR_2g065450 | 31.537 | 501 | 321 | 7 | 1 | 486 | 96 | 589 | 8.24e-75 | 246 |
MS.gene37786.t1 | MTR_7g057340 | 55.814 | 172 | 76 | 0 | 316 | 487 | 1 | 172 | 2.37e-69 | 219 |
MS.gene37786.t1 | MTR_7g057390 | 52.907 | 172 | 78 | 1 | 316 | 487 | 1 | 169 | 7.66e-63 | 202 |
MS.gene37786.t1 | MTR_2g064425 | 37.888 | 322 | 181 | 4 | 1 | 309 | 93 | 408 | 2.17e-62 | 210 |
MS.gene37786.t1 | MTR_7g010710 | 28.921 | 491 | 329 | 6 | 10 | 484 | 66 | 552 | 2.83e-62 | 212 |
MS.gene37786.t1 | MTR_3g015080 | 56.395 | 172 | 37 | 2 | 316 | 487 | 1 | 134 | 3.00e-61 | 197 |
MS.gene37786.t1 | MTR_2g010960 | 27.572 | 486 | 326 | 8 | 2 | 465 | 22 | 503 | 8.83e-57 | 197 |
MS.gene37786.t1 | MTR_2g064425 | 35.404 | 322 | 174 | 5 | 1 | 309 | 93 | 393 | 3.21e-55 | 190 |
MS.gene37786.t1 | MTR_3g465090 | 27.888 | 502 | 327 | 12 | 5 | 479 | 21 | 514 | 1.13e-52 | 186 |
MS.gene37786.t1 | MTR_3g063170 | 26.506 | 498 | 339 | 9 | 5 | 479 | 21 | 514 | 2.24e-52 | 185 |
MS.gene37786.t1 | MTR_6g064980 | 27.686 | 484 | 321 | 9 | 5 | 465 | 21 | 498 | 8.00e-52 | 184 |
MS.gene37786.t1 | MTR_3g063120 | 26.891 | 476 | 324 | 8 | 11 | 465 | 2 | 474 | 6.11e-51 | 181 |
MS.gene37786.t1 | MTR_3g052120 | 27.801 | 482 | 319 | 10 | 7 | 465 | 23 | 498 | 1.84e-50 | 180 |
MS.gene37786.t1 | MTR_3g063140 | 27.010 | 485 | 323 | 9 | 5 | 465 | 21 | 498 | 8.28e-50 | 178 |
MS.gene37786.t1 | MTR_7g050990 | 62.585 | 147 | 34 | 2 | 143 | 277 | 28 | 165 | 1.07e-49 | 182 |
MS.gene37786.t1 | MTR_6g065040 | 26.683 | 401 | 265 | 9 | 88 | 465 | 2 | 396 | 2.62e-40 | 150 |
MS.gene37786.t1 | MTR_2g064295 | 24.858 | 527 | 325 | 17 | 10 | 485 | 254 | 760 | 2.15e-33 | 134 |
MS.gene37786.t1 | MTR_3g058160 | 24.470 | 519 | 337 | 16 | 10 | 485 | 63 | 569 | 4.89e-33 | 132 |
MS.gene37786.t1 | MTR_3g058160 | 24.470 | 519 | 337 | 16 | 10 | 485 | 254 | 760 | 7.70e-33 | 133 |
MS.gene37786.t1 | MTR_3g058160 | 24.470 | 519 | 337 | 16 | 10 | 485 | 274 | 780 | 1.03e-32 | 132 |
MS.gene37786.t1 | MTR_3g058160 | 24.470 | 519 | 337 | 16 | 10 | 485 | 267 | 773 | 1.04e-32 | 132 |
MS.gene37786.t1 | MTR_3g063160 | 29.630 | 270 | 173 | 4 | 5 | 259 | 21 | 288 | 7.47e-31 | 121 |
MS.gene37786.t1 | MTR_2g012870 | 24.883 | 426 | 276 | 13 | 12 | 402 | 254 | 670 | 6.84e-26 | 112 |
MS.gene37786.t1 | MTR_2g012900 | 24.427 | 524 | 330 | 18 | 12 | 481 | 254 | 765 | 7.52e-26 | 112 |
MS.gene37786.t1 | MTR_7g011770 | 31.674 | 221 | 125 | 5 | 10 | 204 | 240 | 460 | 1.51e-21 | 98.6 |
MS.gene37786.t1 | MTR_7g011663 | 29.762 | 252 | 150 | 6 | 10 | 235 | 344 | 594 | 9.52e-21 | 96.3 |
MS.gene37786.t1 | MTR_7g094970 | 27.734 | 256 | 150 | 7 | 10 | 235 | 206 | 456 | 3.19e-18 | 88.2 |
MS.gene37786.t1 | MTR_5g030050 | 28.163 | 245 | 142 | 9 | 15 | 235 | 3 | 237 | 5.30e-15 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37786.t1 | AT5G23960 | 38.353 | 498 | 294 | 2 | 2 | 487 | 49 | 545 | 5.79e-124 | 372 |
MS.gene37786.t1 | AT5G23960 | 38.400 | 500 | 293 | 3 | 2 | 487 | 49 | 547 | 7.46e-123 | 370 |
MS.gene37786.t1 | AT3G14490 | 36.111 | 504 | 301 | 6 | 1 | 487 | 102 | 601 | 2.75e-103 | 321 |
MS.gene37786.t1 | AT3G29410 | 33.533 | 501 | 316 | 4 | 1 | 487 | 1 | 498 | 1.44e-100 | 311 |
MS.gene37786.t1 | AT3G14520 | 33.730 | 504 | 314 | 5 | 1 | 487 | 104 | 604 | 1.51e-100 | 314 |
MS.gene37786.t1 | AT3G29410 | 33.533 | 501 | 316 | 4 | 1 | 487 | 106 | 603 | 3.94e-99 | 310 |
MS.gene37786.t1 | AT1G31950 | 32.996 | 494 | 311 | 4 | 11 | 487 | 117 | 607 | 4.10e-98 | 308 |
MS.gene37786.t1 | AT1G31950 | 32.996 | 494 | 311 | 4 | 11 | 487 | 116 | 606 | 5.74e-98 | 307 |
MS.gene37786.t1 | AT1G70080 | 34.012 | 491 | 305 | 7 | 15 | 487 | 122 | 611 | 2.81e-96 | 303 |
MS.gene37786.t1 | AT1G33750 | 33.069 | 505 | 312 | 6 | 1 | 487 | 107 | 603 | 3.74e-96 | 303 |
MS.gene37786.t1 | AT3G14540 | 33.532 | 504 | 315 | 6 | 1 | 487 | 101 | 601 | 9.94e-94 | 296 |
MS.gene37786.t1 | AT3G32030 | 31.873 | 502 | 323 | 5 | 2 | 487 | 106 | 604 | 2.16e-90 | 288 |
MS.gene37786.t1 | AT4G20200 | 32.341 | 504 | 320 | 7 | 1 | 487 | 105 | 604 | 5.92e-90 | 286 |
MS.gene37786.t1 | AT5G44630 | 32.596 | 497 | 311 | 8 | 6 | 485 | 66 | 555 | 1.25e-87 | 279 |
MS.gene37786.t1 | AT3G29190 | 31.558 | 507 | 320 | 7 | 1 | 487 | 102 | 601 | 5.09e-86 | 276 |
MS.gene37786.t1 | AT4G16730 | 30.452 | 509 | 326 | 6 | 3 | 487 | 35 | 539 | 5.84e-85 | 272 |
MS.gene37786.t1 | AT4G20210 | 31.213 | 503 | 327 | 5 | 1 | 487 | 101 | 600 | 6.19e-85 | 273 |
MS.gene37786.t1 | AT4G20230 | 32.106 | 489 | 312 | 6 | 12 | 483 | 128 | 613 | 6.78e-85 | 274 |
MS.gene37786.t1 | AT4G20230 | 32.106 | 489 | 312 | 6 | 12 | 483 | 116 | 601 | 9.74e-85 | 273 |
MS.gene37786.t1 | AT4G15870 | 31.881 | 505 | 306 | 10 | 1 | 485 | 110 | 596 | 2.39e-84 | 272 |
MS.gene37786.t1 | AT4G16730 | 30.584 | 497 | 317 | 6 | 15 | 487 | 1 | 493 | 3.27e-83 | 266 |
MS.gene37786.t1 | AT3G29110 | 31.828 | 487 | 313 | 5 | 15 | 485 | 112 | 595 | 9.66e-83 | 268 |
MS.gene37786.t1 | AT1G31950 | 33.838 | 396 | 243 | 3 | 11 | 390 | 117 | 509 | 2.48e-78 | 254 |
MS.gene37786.t1 | AT2G23230 | 30.539 | 501 | 327 | 7 | 1 | 483 | 99 | 596 | 4.54e-78 | 256 |
MS.gene37786.t1 | AT4G13300 | 30.364 | 494 | 317 | 8 | 12 | 485 | 66 | 552 | 7.02e-76 | 248 |
MS.gene37786.t1 | AT2G23230 | 30.339 | 501 | 323 | 8 | 1 | 483 | 99 | 591 | 1.02e-75 | 249 |
MS.gene37786.t1 | AT4G13280 | 30.608 | 477 | 310 | 8 | 26 | 485 | 80 | 552 | 1.89e-75 | 247 |
MS.gene37786.t1 | AT3G14540 | 34.146 | 410 | 251 | 5 | 1 | 394 | 101 | 507 | 2.80e-74 | 243 |
MS.gene37786.t1 | AT1G66020 | 31.138 | 501 | 326 | 6 | 1 | 485 | 99 | 596 | 5.72e-74 | 244 |
MS.gene37786.t1 | AT3G25830 | 30.214 | 513 | 326 | 9 | 1 | 487 | 88 | 594 | 2.52e-73 | 243 |
MS.gene37786.t1 | AT3G25820 | 30.214 | 513 | 326 | 9 | 1 | 487 | 88 | 594 | 2.52e-73 | 243 |
MS.gene37786.t1 | AT3G25810 | 30.297 | 505 | 320 | 10 | 10 | 487 | 98 | 597 | 1.03e-71 | 238 |
MS.gene37786.t1 | AT1G48800 | 29.363 | 487 | 322 | 8 | 15 | 483 | 120 | 602 | 1.85e-71 | 238 |
MS.gene37786.t1 | AT1G61680 | 29.317 | 498 | 321 | 8 | 1 | 477 | 82 | 569 | 5.90e-70 | 233 |
MS.gene37786.t1 | AT4G16740 | 30.392 | 510 | 319 | 10 | 2 | 487 | 67 | 564 | 4.45e-69 | 231 |
MS.gene37786.t1 | AT2G24210 | 29.883 | 512 | 326 | 10 | 1 | 487 | 87 | 590 | 5.07e-68 | 229 |
MS.gene37786.t1 | AT1G61680 | 29.116 | 498 | 315 | 9 | 1 | 477 | 82 | 562 | 1.06e-67 | 227 |
MS.gene37786.t1 | AT5G48110 | 34.795 | 342 | 206 | 6 | 159 | 487 | 2 | 339 | 3.41e-66 | 217 |
MS.gene37786.t1 | AT4G13280 | 29.412 | 476 | 287 | 8 | 26 | 485 | 80 | 522 | 1.24e-65 | 221 |
MS.gene37786.t1 | AT1G48820 | 29.283 | 502 | 291 | 12 | 1 | 483 | 104 | 560 | 2.38e-63 | 216 |
MS.gene37786.t1 | AT3G25820 | 32.286 | 350 | 212 | 5 | 1 | 330 | 88 | 432 | 7.88e-52 | 182 |
MS.gene37786.t1 | AT4G16740 | 33.333 | 330 | 192 | 6 | 2 | 310 | 67 | 389 | 5.07e-50 | 176 |
MS.gene37786.t1 | AT1G66020 | 33.437 | 323 | 196 | 6 | 1 | 307 | 99 | 418 | 1.01e-48 | 173 |
MS.gene37786.t1 | AT3G25820 | 34.875 | 281 | 158 | 5 | 1 | 261 | 88 | 363 | 8.49e-44 | 159 |
MS.gene37786.t1 | AT3G25820 | 34.875 | 281 | 158 | 5 | 1 | 261 | 88 | 363 | 8.49e-44 | 159 |
MS.gene37786.t1 | AT4G16740 | 34.520 | 281 | 157 | 5 | 2 | 261 | 67 | 341 | 7.94e-42 | 153 |
MS.gene37786.t1 | AT4G16740 | 34.520 | 281 | 157 | 5 | 2 | 261 | 67 | 341 | 7.94e-42 | 153 |
MS.gene37786.t1 | AT1G79460 | 24.248 | 532 | 325 | 18 | 10 | 487 | 272 | 779 | 3.92e-26 | 112 |
MS.gene37786.t1 | AT1G61120 | 23.047 | 512 | 346 | 14 | 12 | 487 | 285 | 784 | 3.41e-22 | 100 |
MS.gene37786.t1 | AT4G02780 | 28.175 | 252 | 154 | 6 | 10 | 235 | 329 | 579 | 3.13e-20 | 94.7 |
Find 97 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATGAGAATTTACTCATTT+TGG | 0.127678 | 6.3:-72806083 | MS.gene37786:CDS |
GAATGTTGTGTTTGGGCTTT+AGG | 0.152282 | 6.3:-72805663 | MS.gene37786:CDS |
GCTCTCTTGCTGTGCTATTT+AGG | 0.182043 | 6.3:-72807187 | MS.gene37786:CDS |
CGTGCAAATGGTAATTTATT+AGG | 0.207867 | 6.3:+72805699 | None:intergenic |
TTGCTTGGGGATGGCTTAAT+TGG | 0.245320 | 6.3:+72806203 | None:intergenic |
AATGTTGTGTTTGGGCTTTA+GGG | 0.260060 | 6.3:-72805662 | MS.gene37786:CDS |
AGAACATATTCCCTCATTCT+TGG | 0.265793 | 6.3:-72804769 | MS.gene37786:CDS |
AGACTACATCAAAAGGAATT+TGG | 0.282155 | 6.3:-72806034 | MS.gene37786:CDS |
GCTTCCAGGAGATGATATTT+TGG | 0.290463 | 6.3:-72806272 | MS.gene37786:CDS |
AACAAATTCAAGGATGAAAA+AGG | 0.296251 | 6.3:-72806364 | MS.gene37786:CDS |
TGAAGGAACTTGCTCGTATA+TGG | 0.298765 | 6.3:+72806108 | None:intergenic |
CAGATGGGATATTAGTTGTT+TGG | 0.339741 | 6.3:-72805399 | MS.gene37786:CDS |
TAAAGAAATTTCATGTAATT+CGG | 0.344453 | 6.3:+72805368 | None:intergenic |
ATATCTTGCTGTAGAATGTT+GGG | 0.350954 | 6.3:+72805626 | None:intergenic |
CTCTAGGGAAGCTGCAACTC+AGG | 0.383125 | 6.3:-72804721 | MS.gene37786:CDS |
TATATAATTATGTACCTCAT+TGG | 0.390236 | 6.3:+72804894 | None:intergenic |
TGCTTGGAGTGATATGAATA+AGG | 0.393240 | 6.3:-72804676 | MS.gene37786:CDS |
ATGTTATATGAGGAAATATA+AGG | 0.397739 | 6.3:-72804745 | MS.gene37786:CDS |
GCCACACAACTTATGCTTCC+AGG | 0.398221 | 6.3:-72806286 | MS.gene37786:CDS |
AATTACCATTTGCACGAGAT+AGG | 0.411996 | 6.3:-72805692 | MS.gene37786:CDS |
GGATAGTGGAATGTTGTGTT+TGG | 0.415148 | 6.3:-72805671 | MS.gene37786:CDS |
GATTGATTCAATATGCCGTT+TGG | 0.420826 | 6.3:-72807312 | MS.gene37786:CDS |
CATTCTTGGAATGTTATATG+AGG | 0.433901 | 6.3:-72804755 | MS.gene37786:CDS |
GATGATACATATGATGCATA+TGG | 0.437184 | 6.3:-72805563 | MS.gene37786:CDS |
ATTAATGCTGCTATTGTCAT+TGG | 0.437515 | 6.3:-72804940 | MS.gene37786:CDS |
AATATCTTGCTGTAGAATGT+TGG | 0.439376 | 6.3:+72805625 | None:intergenic |
TTGGGGATGGCTTAATTGGT+TGG | 0.440314 | 6.3:+72806207 | None:intergenic |
TGGCTTAATTGGTTGGCAAT+GGG | 0.443803 | 6.3:+72806214 | None:intergenic |
ATTGATTCAATATGCCGTTT+GGG | 0.448114 | 6.3:-72807311 | MS.gene37786:CDS |
GATAGTGGAATGTTGTGTTT+GGG | 0.449063 | 6.3:-72805670 | MS.gene37786:CDS |
AGACTTATCGAGAATATTGA+TGG | 0.454439 | 6.3:-72806328 | MS.gene37786:CDS |
TAAGTATCAACCAACATTAG+AGG | 0.454501 | 6.3:-72805085 | MS.gene37786:CDS |
ATACTTACTACTTAACCATC+TGG | 0.454732 | 6.3:+72805101 | None:intergenic |
ATATGAATAAGGAATGTCTT+AGG | 0.459364 | 6.3:-72804665 | MS.gene37786:CDS |
TGAGGAAATATAAGGTCTCT+AGG | 0.460916 | 6.3:-72804737 | MS.gene37786:CDS |
ATGGCTTAATTGGTTGGCAA+TGG | 0.462454 | 6.3:+72806213 | None:intergenic |
AGATCATTATGAAGAATTAG+AGG | 0.472981 | 6.3:-72805333 | MS.gene37786:CDS |
ATTAATGATTAAACAGGTAC+AGG | 0.478888 | 6.3:+72804504 | None:intergenic |
GAGGTGGAAATGAGAAAGGA+AGG | 0.480340 | 6.3:-72805314 | MS.gene37786:CDS |
CATATAACATTCCAAGAATG+AGG | 0.482116 | 6.3:+72804758 | None:intergenic |
CAAGAACTTGCCTAGGTTGG+AGG | 0.483046 | 6.3:-72806146 | MS.gene37786:CDS |
ATTAGAGGTGGAAATGAGAA+AGG | 0.485139 | 6.3:-72805318 | MS.gene37786:CDS |
AACAAGTTAAACAAAGCTTA+AGG | 0.485779 | 6.3:-72806180 | MS.gene37786:CDS |
TTTAGAAGACAGGCTAGAAA+AGG | 0.491503 | 6.3:+72804624 | None:intergenic |
TCTTCCAAAATATCATCTCC+TGG | 0.494742 | 6.3:+72806268 | None:intergenic |
GCTCCAAAGACTACATCAAA+AGG | 0.495342 | 6.3:-72806041 | MS.gene37786:CDS |
TGAATGTACTCCTCTAATGT+TGG | 0.496106 | 6.3:+72805075 | None:intergenic |
ACTATCCTATCTCGTGCAAA+TGG | 0.496311 | 6.3:+72805687 | None:intergenic |
TTAACAACAACTTGTTACAT+TGG | 0.496688 | 6.3:-72805021 | MS.gene37786:CDS |
CAAACATCAACAGAATCATC+TGG | 0.498007 | 6.3:-72805054 | MS.gene37786:CDS |
AGATGCATTCAACAAATTCA+AGG | 0.498182 | 6.3:-72806374 | MS.gene37786:CDS |
CCTGTCTTCTAAACCTCTCA+CGG | 0.502314 | 6.3:-72804614 | MS.gene37786:CDS |
AAAGATATCCTCTGTGGCTG+TGG | 0.502696 | 6.3:+72804990 | None:intergenic |
CTGTGCTATTTAGGTTGTTG+AGG | 0.502767 | 6.3:-72807178 | MS.gene37786:CDS |
AACTGACCTTTCAATTGCCT+CGG | 0.503240 | 6.3:+72805514 | None:intergenic |
AACAACTTGTTACATTGGCA+TGG | 0.504142 | 6.3:-72805016 | MS.gene37786:CDS |
TTATAGATGGTGGAAGGAGT+TGG | 0.509223 | 6.3:-72805727 | MS.gene37786:intron |
TAACTTCGTGCCTCCAACCT+AGG | 0.509993 | 6.3:+72806136 | None:intergenic |
CCTAAACTACTACGTAAAAG+AGG | 0.512666 | 6.3:-72805279 | MS.gene37786:intron |
AAAGGCATTGGAACTTCAGT+TGG | 0.515959 | 6.3:+72804642 | None:intergenic |
ATGTTGTGTTTGGGCTTTAG+GGG | 0.524038 | 6.3:-72805661 | MS.gene37786:CDS |
GAAAGAGAATCGCTAATGCT+TGG | 0.525682 | 6.3:-72804692 | MS.gene37786:CDS |
CCGTGAGAGGTTTAGAAGAC+AGG | 0.527512 | 6.3:+72804614 | None:intergenic |
ACACAAGAACTTGCCTAGGT+TGG | 0.536820 | 6.3:-72806149 | MS.gene37786:CDS |
CCACAGAGGATATCTTTAAG+TGG | 0.540017 | 6.3:-72804984 | MS.gene37786:CDS |
GAGGAAATATAAGGTCTCTA+GGG | 0.550958 | 6.3:-72804736 | MS.gene37786:CDS |
AATGATATTTCACACCCAAA+CGG | 0.556363 | 6.3:+72807297 | None:intergenic |
TGGCCCTTATAGATGGTGGA+AGG | 0.561395 | 6.3:-72805733 | MS.gene37786:intron |
AGACAGGCTAGAAAAGGCAT+TGG | 0.562317 | 6.3:+72804630 | None:intergenic |
CATATATGACGGAGGCCAGA+TGG | 0.566388 | 6.3:-72805116 | MS.gene37786:CDS |
AGTAAATTCTCATTATGTGA+AGG | 0.573099 | 6.3:+72806091 | None:intergenic |
ACAACTTGTTACATTGGCAT+GGG | 0.574869 | 6.3:-72805015 | MS.gene37786:CDS |
GACTTATCGAGAATATTGAT+GGG | 0.577574 | 6.3:-72806327 | MS.gene37786:CDS |
TTTAGGTTGTTGAGGCAACA+AGG | 0.580324 | 6.3:-72807170 | MS.gene37786:CDS |
AGTTAAACAAAGCTTAAGGC+AGG | 0.582484 | 6.3:-72806176 | MS.gene37786:CDS |
CTGTCTTCTAAACCTCTCAC+GGG | 0.584962 | 6.3:-72804613 | MS.gene37786:CDS |
GGCATATTGAATCAATCAAG+TGG | 0.585970 | 6.3:+72807318 | None:intergenic |
TATCTTGCTGTAGAATGTTG+GGG | 0.591451 | 6.3:+72805627 | None:intergenic |
ATTTGCACGAGATAGGATAG+TGG | 0.594436 | 6.3:-72805685 | MS.gene37786:CDS |
ATGCTGCTATTGTCATTGGT+AGG | 0.598576 | 6.3:-72804936 | MS.gene37786:CDS |
ATAGCACAGCAAGAGAGCAA+AGG | 0.599003 | 6.3:+72807192 | None:intergenic |
CTCTACACAAGAACTTGCCT+AGG | 0.600169 | 6.3:-72806153 | MS.gene37786:CDS |
CACAGAGGATATCTTTAAGT+GGG | 0.600803 | 6.3:-72804983 | MS.gene37786:CDS |
ATATGTTCAATCATATATGA+CGG | 0.603449 | 6.3:-72805127 | MS.gene37786:CDS |
ATTTCACCGAGGCAATTGAA+AGG | 0.605539 | 6.3:-72805520 | MS.gene37786:intron |
AGGGAAGCTGCAACTCAGGA+AGG | 0.608597 | 6.3:-72804717 | MS.gene37786:CDS |
TCACTTCAATAACCCGTGAG+AGG | 0.612175 | 6.3:+72804601 | None:intergenic |
ATATAACATTCCAAGAATGA+GGG | 0.619570 | 6.3:+72804759 | None:intergenic |
TCCTGGAAGCATAAGTTGTG+TGG | 0.623742 | 6.3:+72806285 | None:intergenic |
GACAACTTCACACATCCTGA+AGG | 0.624123 | 6.3:-72804564 | MS.gene37786:CDS |
TCATTATGAAGAATTAGAGG+TGG | 0.648555 | 6.3:-72805330 | MS.gene37786:CDS |
GAACGACATTGTGTCCAATG+AGG | 0.671241 | 6.3:-72804908 | MS.gene37786:intron |
CATGGGAGCCACAGCCACAG+AGG | 0.681348 | 6.3:-72804998 | MS.gene37786:CDS |
ACTTATCGAGAATATTGATG+GGG | 0.704685 | 6.3:-72806326 | MS.gene37786:CDS |
CCACTTAAAGATATCCTCTG+TGG | 0.711246 | 6.3:+72804984 | None:intergenic |
TGTTCAATCATATATGACGG+AGG | 0.712048 | 6.3:-72805124 | MS.gene37786:CDS |
TGAGCTAGAACATTTCACCG+AGG | 0.789345 | 6.3:-72805531 | MS.gene37786:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTATTTTTTATTAAATT+TGG | + | chr6.3:72806656-72806675 | None:intergenic | 0.0% |
!! | AATTAAAACAAATTTAATTG+TGG | + | chr6.3:72807019-72807038 | None:intergenic | 10.0% |
!! | ATGTTCATATTTAAATATAT+AGG | + | chr6.3:72805030-72805049 | None:intergenic | 10.0% |
!!! | ATAAAAAAATTTACTTGTTT+TGG | + | chr6.3:72804910-72804929 | None:intergenic | 10.0% |
!!! | CTATTTATTATATTTCATTT+TGG | - | chr6.3:72806704-72806723 | MS.gene37786:intron | 10.0% |
!!! | GTAAATTTTTTTATAAAATG+TGG | - | chr6.3:72804916-72804935 | MS.gene37786:CDS | 10.0% |
!!! | TTCTAATATATTATTGTTTT+TGG | - | chr6.3:72806115-72806134 | MS.gene37786:CDS | 10.0% |
!! | TAAAGAAATTTCATGTAATT+CGG | + | chr6.3:72806503-72806522 | None:intergenic | 15.0% |
!!! | TTAAATATTGTTGGATTTTT+TGG | - | chr6.3:72806045-72806064 | MS.gene37786:CDS | 15.0% |
!!! | TTTATTATATTTCATTTTGG+TGG | - | chr6.3:72806707-72806726 | MS.gene37786:intron | 15.0% |
!! | AAATCAATGTAAATAAGTTG+AGG | + | chr6.3:72804747-72804766 | None:intergenic | 20.0% |
!! | ATATGTTCAATCATATATGA+CGG | - | chr6.3:72806741-72806760 | MS.gene37786:intron | 20.0% |
!! | ATGTTATATGAGGAAATATA+AGG | - | chr6.3:72807123-72807142 | MS.gene37786:intron | 20.0% |
!! | ATTGTATCATTGTACTTTAT+CGG | - | chr6.3:72805115-72805134 | MS.gene37786:CDS | 20.0% |
!! | CAATAATATTAATCACAACA+AGG | + | chr6.3:72805917-72805936 | None:intergenic | 20.0% |
!! | TACGAGTATATATGTATATA+TGG | + | chr6.3:72806404-72806423 | None:intergenic | 20.0% |
!! | TATATAATTATGTACCTCAT+TGG | + | chr6.3:72806977-72806996 | None:intergenic | 20.0% |
!! | TTAAAACTTAATTAATGACG+TGG | + | chr6.3:72805319-72805338 | None:intergenic | 20.0% |
!!! | AAATAGTTTTCTTTATGCTA+TGG | + | chr6.3:72806690-72806709 | None:intergenic | 20.0% |
!!! | AATCAATGTAAATAAGTTGA+GGG | + | chr6.3:72804746-72804765 | None:intergenic | 20.0% |
!!! | ACTTTAAAAGAGAAAATCAA+CGG | - | chr6.3:72806019-72806038 | MS.gene37786:intron | 20.0% |
!!! | TAATGAGAATTTACTCATTT+TGG | - | chr6.3:72805785-72805804 | MS.gene37786:intron | 20.0% |
!!! | TTTTAATGTTACTCATCATA+TGG | - | chr6.3:72805333-72805352 | MS.gene37786:CDS | 20.0% |
! | AACAAATTCAAGGATGAAAA+AGG | - | chr6.3:72805504-72805523 | MS.gene37786:intron | 25.0% |
! | AACAAGTTAAACAAAGCTTA+AGG | - | chr6.3:72805688-72805707 | MS.gene37786:CDS | 25.0% |
! | AGATCATTATGAAGAATTAG+AGG | - | chr6.3:72806535-72806554 | MS.gene37786:intron | 25.0% |
! | AGTAAATTCTCATTATGTGA+AGG | + | chr6.3:72805780-72805799 | None:intergenic | 25.0% |
! | AGTTAACACTTCGTATAATA+TGG | - | chr6.3:72806373-72806392 | MS.gene37786:CDS | 25.0% |
! | ATATAACATTCCAAGAATGA+GGG | + | chr6.3:72807112-72807131 | None:intergenic | 25.0% |
! | ATATGAATAAGGAATGTCTT+AGG | - | chr6.3:72807203-72807222 | MS.gene37786:CDS | 25.0% |
! | ATTGATGCATACAATTAATG+TGG | + | chr6.3:72804844-72804863 | None:intergenic | 25.0% |
! | CAACGGTAATTAAATATTGT+TGG | - | chr6.3:72806036-72806055 | MS.gene37786:CDS | 25.0% |
! | CACAAGAACTATGTTAAAAA+TGG | - | chr6.3:72804629-72804648 | MS.gene37786:CDS | 25.0% |
! | GAACATTATAACAATTCTGA+AGG | - | chr6.3:72805202-72805221 | MS.gene37786:intron | 25.0% |
!! | AATGAATGTGATTTTCAGAT+GGG | - | chr6.3:72806454-72806473 | MS.gene37786:intron | 25.0% |
!! | ACAACTTGTTTAAAAACACA+TGG | - | chr6.3:72805956-72805975 | MS.gene37786:intron | 25.0% |
!! | ATAACAATTCTGAAGGAATT+TGG | - | chr6.3:72805209-72805228 | MS.gene37786:intron | 25.0% |
!! | TAATGAATGTGATTTTCAGA+TGG | - | chr6.3:72806453-72806472 | MS.gene37786:intron | 25.0% |
!!! | TTAACAACAACTTGTTACAT+TGG | - | chr6.3:72806847-72806866 | MS.gene37786:intron | 25.0% |
!!! | TTGTTTAACTTGTTTTGCTT+GGG | + | chr6.3:72805682-72805701 | None:intergenic | 25.0% |
!!! | TTTGTTTAACTTGTTTTGCT+TGG | + | chr6.3:72805683-72805702 | None:intergenic | 25.0% |
AACACTTCGTATAATATGGA+AGG | - | chr6.3:72806377-72806396 | MS.gene37786:intron | 30.0% | |
AATGATATTTCACACCCAAA+CGG | + | chr6.3:72804574-72804593 | None:intergenic | 30.0% | |
AATTACCAAAACAAATCCAG+AGG | - | chr6.3:72805980-72805999 | MS.gene37786:intron | 30.0% | |
ACTTATCGAGAATATTGATG+GGG | - | chr6.3:72805542-72805561 | MS.gene37786:CDS | 30.0% | |
AGACTACATCAAAAGGAATT+TGG | - | chr6.3:72805834-72805853 | MS.gene37786:intron | 30.0% | |
AGACTTATCGAGAATATTGA+TGG | - | chr6.3:72805540-72805559 | MS.gene37786:CDS | 30.0% | |
AGATGCATTCAACAAATTCA+AGG | - | chr6.3:72805494-72805513 | MS.gene37786:intron | 30.0% | |
ATACTTACTACTTAACCATC+TGG | + | chr6.3:72806770-72806789 | None:intergenic | 30.0% | |
ATTAATGCTGCTATTGTCAT+TGG | - | chr6.3:72806928-72806947 | MS.gene37786:intron | 30.0% | |
CATATAACATTCCAAGAATG+AGG | + | chr6.3:72807113-72807132 | None:intergenic | 30.0% | |
CATTCTTGGAATGTTATATG+AGG | - | chr6.3:72807113-72807132 | MS.gene37786:intron | 30.0% | |
CGTGCAAATGGTAATTTATT+AGG | + | chr6.3:72806172-72806191 | None:intergenic | 30.0% | |
GACTTATCGAGAATATTGAT+GGG | - | chr6.3:72805541-72805560 | MS.gene37786:CDS | 30.0% | |
GATGATACATATGATGCATA+TGG | - | chr6.3:72806305-72806324 | MS.gene37786:CDS | 30.0% | |
TAAGTATCAACCAACATTAG+AGG | - | chr6.3:72806783-72806802 | MS.gene37786:intron | 30.0% | |
TCATTATGAAGAATTAGAGG+TGG | - | chr6.3:72806538-72806557 | MS.gene37786:intron | 30.0% | |
TGATGTTTCTTAGAAACACA+TGG | + | chr6.3:72806077-72806096 | None:intergenic | 30.0% | |
TTGTATGCATCAATAACGTA+AGG | - | chr6.3:72804850-72804869 | MS.gene37786:intron | 30.0% | |
! | AAATAAGTTGAGGGTATACT+TGG | + | chr6.3:72804737-72804756 | None:intergenic | 30.0% |
! | AATATCTTGCTGTAGAATGT+TGG | + | chr6.3:72806246-72806265 | None:intergenic | 30.0% |
! | AATGTTTTCATTTCTCCTTC+AGG | + | chr6.3:72807322-72807341 | None:intergenic | 30.0% |
! | ATATCTTGCTGTAGAATGTT+GGG | + | chr6.3:72806245-72806264 | None:intergenic | 30.0% |
! | ATTCCTTTTGATGTAGTCTT+TGG | + | chr6.3:72805833-72805852 | None:intergenic | 30.0% |
! | ATTGATTCAATATGCCGTTT+GGG | - | chr6.3:72804557-72804576 | MS.gene37786:CDS | 30.0% |
! | CTCTTTTACGTAGTAGTTTA+GGG | + | chr6.3:72806591-72806610 | None:intergenic | 30.0% |
!!! | TCTGAAGGAATTTGGTTTTA+AGG | - | chr6.3:72805217-72805236 | MS.gene37786:intron | 30.0% |
!!! | TGTTTAACTTGTTTTGCTTG+GGG | + | chr6.3:72805681-72805700 | None:intergenic | 30.0% |
!!! | TTTTGATGATGAGATTGAAG+AGG | - | chr6.3:72804592-72804611 | MS.gene37786:CDS | 30.0% |
AATGTTGTGTTTGGGCTTTA+GGG | - | chr6.3:72806206-72806225 | MS.gene37786:CDS | 35.0% | |
AATTACCATTTGCACGAGAT+AGG | - | chr6.3:72806176-72806195 | MS.gene37786:CDS | 35.0% | |
ACTACTACGTAAAAGAGGTA+CGG | - | chr6.3:72806594-72806613 | MS.gene37786:intron | 35.0% | |
AGAACATATTCCCTCATTCT+TGG | - | chr6.3:72807099-72807118 | MS.gene37786:intron | 35.0% | |
AGGATAAAGCTAACCAGTAT+TGG | - | chr6.3:72804870-72804889 | MS.gene37786:intron | 35.0% | |
AGTTAAACAAAGCTTAAGGC+AGG | - | chr6.3:72805692-72805711 | MS.gene37786:CDS | 35.0% | |
ATTAGAGGTGGAAATGAGAA+AGG | - | chr6.3:72806550-72806569 | MS.gene37786:intron | 35.0% | |
CAAACATCAACAGAATCATC+TGG | - | chr6.3:72806814-72806833 | MS.gene37786:intron | 35.0% | |
CACAGAGGATATCTTTAAGT+GGG | - | chr6.3:72806885-72806904 | MS.gene37786:intron | 35.0% | |
CAGATGGGATATTAGTTGTT+TGG | - | chr6.3:72806469-72806488 | MS.gene37786:intron | 35.0% | |
CCTAAACTACTACGTAAAAG+AGG | - | chr6.3:72806589-72806608 | MS.gene37786:intron | 35.0% | |
GAGGAAATATAAGGTCTCTA+GGG | - | chr6.3:72807132-72807151 | MS.gene37786:intron | 35.0% | |
GGCATATTGAATCAATCAAG+TGG | + | chr6.3:72804553-72804572 | None:intergenic | 35.0% | |
TCTTCCAAAATATCATCTCC+TGG | + | chr6.3:72805603-72805622 | None:intergenic | 35.0% | |
TGAATGTACTCCTCTAATGT+TGG | + | chr6.3:72806796-72806815 | None:intergenic | 35.0% | |
TGAGGAAATATAAGGTCTCT+AGG | - | chr6.3:72807131-72807150 | MS.gene37786:intron | 35.0% | |
TGCTTGGAGTGATATGAATA+AGG | - | chr6.3:72807192-72807211 | MS.gene37786:CDS | 35.0% | |
TGTTCAATCATATATGACGG+AGG | - | chr6.3:72806744-72806763 | MS.gene37786:intron | 35.0% | |
TTTAGAAGACAGGCTAGAAA+AGG | + | chr6.3:72807247-72807266 | None:intergenic | 35.0% | |
! | CCTCTTTTACGTAGTAGTTT+AGG | + | chr6.3:72806592-72806611 | None:intergenic | 35.0% |
! | GATTGATTCAATATGCCGTT+TGG | - | chr6.3:72804556-72804575 | MS.gene37786:CDS | 35.0% |
! | TATCTTGCTGTAGAATGTTG+GGG | + | chr6.3:72806244-72806263 | None:intergenic | 35.0% |
!! | AACAACTTGTTACATTGGCA+TGG | - | chr6.3:72806852-72806871 | MS.gene37786:intron | 35.0% |
!! | AACTACCTCTGGATTTGTTT+TGG | + | chr6.3:72805988-72806007 | None:intergenic | 35.0% |
!! | ACAACTTGTTACATTGGCAT+GGG | - | chr6.3:72806853-72806872 | MS.gene37786:intron | 35.0% |
!! | AGGAGATGATATTTTGGAAG+AGG | - | chr6.3:72805602-72805621 | MS.gene37786:intron | 35.0% |
!! | GATAGTGGAATGTTGTGTTT+GGG | - | chr6.3:72806198-72806217 | MS.gene37786:CDS | 35.0% |
!! | TGATATTTTGGAAGAGGCTT+TGG | - | chr6.3:72805608-72805627 | MS.gene37786:intron | 35.0% |
!!! | AATCAAGTGGACTTTTTCGA+AGG | + | chr6.3:72804540-72804559 | None:intergenic | 35.0% |
!!! | ATCAAGTGGACTTTTTCGAA+GGG | + | chr6.3:72804539-72804558 | None:intergenic | 35.0% |
!!! | TTGTTTTTGGCCCTTATAGA+TGG | - | chr6.3:72806128-72806147 | MS.gene37786:CDS | 35.0% |
AACTCCTTCCACCATCTATA+AGG | + | chr6.3:72806142-72806161 | None:intergenic | 40.0% | |
AACTGACCTTTCAATTGCCT+CGG | + | chr6.3:72806357-72806376 | None:intergenic | 40.0% | |
ACTATCCTATCTCGTGCAAA+TGG | + | chr6.3:72806184-72806203 | None:intergenic | 40.0% | |
ACTCCTTCCACCATCTATAA+GGG | + | chr6.3:72806141-72806160 | None:intergenic | 40.0% | |
ATGCTGCTATTGTCATTGGT+AGG | - | chr6.3:72806932-72806951 | MS.gene37786:intron | 40.0% | |
ATGGCTTAATTGGTTGGCAA+TGG | + | chr6.3:72805658-72805677 | None:intergenic | 40.0% | |
ATTTCACCGAGGCAATTGAA+AGG | - | chr6.3:72806348-72806367 | MS.gene37786:CDS | 40.0% | |
ATTTGCACGAGATAGGATAG+TGG | - | chr6.3:72806183-72806202 | MS.gene37786:CDS | 40.0% | |
CATCAGTAGTTAACTACCTC+TGG | + | chr6.3:72805999-72806018 | None:intergenic | 40.0% | |
CCACAGAGGATATCTTTAAG+TGG | - | chr6.3:72806884-72806903 | MS.gene37786:intron | 40.0% | |
CCACTTAAAGATATCCTCTG+TGG | + | chr6.3:72806887-72806906 | None:intergenic | 40.0% | |
GAAAGAGAATCGCTAATGCT+TGG | - | chr6.3:72807176-72807195 | MS.gene37786:CDS | 40.0% | |
GAATGTTGTGTTTGGGCTTT+AGG | - | chr6.3:72806205-72806224 | MS.gene37786:CDS | 40.0% | |
GCTCCAAAGACTACATCAAA+AGG | - | chr6.3:72805827-72805846 | MS.gene37786:intron | 40.0% | |
TAATTAATGACGTGGCTGCA+TGG | + | chr6.3:72805311-72805330 | None:intergenic | 40.0% | |
TGGCTTAATTGGTTGGCAAT+GGG | + | chr6.3:72805657-72805676 | None:intergenic | 40.0% | |
! | ATGTTGTGTTTGGGCTTTAG+GGG | - | chr6.3:72806207-72806226 | MS.gene37786:CDS | 40.0% |
! | GCTTCCAGGAGATGATATTT+TGG | - | chr6.3:72805596-72805615 | MS.gene37786:intron | 40.0% |
! | TGAAGGAACTTGCTCGTATA+TGG | + | chr6.3:72805763-72805782 | None:intergenic | 40.0% |
!! | AAAGGCATTGGAACTTCAGT+TGG | + | chr6.3:72807229-72807248 | None:intergenic | 40.0% |
!! | CTGTGCTATTTAGGTTGTTG+AGG | - | chr6.3:72804690-72804709 | MS.gene37786:CDS | 40.0% |
!! | GGATAGTGGAATGTTGTGTT+TGG | - | chr6.3:72806197-72806216 | MS.gene37786:CDS | 40.0% |
!! | TTATAGATGGTGGAAGGAGT+TGG | - | chr6.3:72806141-72806160 | MS.gene37786:CDS | 40.0% |
!! | TTTAGGTTGTTGAGGCAACA+AGG | - | chr6.3:72804698-72804717 | MS.gene37786:CDS | 40.0% |
!! | TTTTTGGCCCTTATAGATGG+TGG | - | chr6.3:72806131-72806150 | MS.gene37786:CDS | 40.0% |
!!! | TAACTTGTTTTGCTTGGGGA+TGG | + | chr6.3:72805677-72805696 | None:intergenic | 40.0% |
AAAGATATCCTCTGTGGCTG+TGG | + | chr6.3:72806881-72806900 | None:intergenic | 45.0% | |
ACACAAGAACTTGCCTAGGT+TGG | - | chr6.3:72805719-72805738 | MS.gene37786:CDS | 45.0% | |
ATAGCACAGCAAGAGAGCAA+AGG | + | chr6.3:72804679-72804698 | None:intergenic | 45.0% | |
CCTGTCTTCTAAACCTCTCA+CGG | - | chr6.3:72807254-72807273 | MS.gene37786:CDS | 45.0% | |
CTCTACACAAGAACTTGCCT+AGG | - | chr6.3:72805715-72805734 | MS.gene37786:CDS | 45.0% | |
CTGTCTTCTAAACCTCTCAC+GGG | - | chr6.3:72807255-72807274 | MS.gene37786:CDS | 45.0% | |
GAACGACATTGTGTCCAATG+AGG | - | chr6.3:72806960-72806979 | MS.gene37786:intron | 45.0% | |
GACAACTTCACACATCCTGA+AGG | - | chr6.3:72807304-72807323 | MS.gene37786:CDS | 45.0% | |
GAGGTGGAAATGAGAAAGGA+AGG | - | chr6.3:72806554-72806573 | MS.gene37786:intron | 45.0% | |
GGCTGCATGGAAGATTACTA+AGG | + | chr6.3:72805298-72805317 | None:intergenic | 45.0% | |
TCACTTCAATAACCCGTGAG+AGG | + | chr6.3:72807270-72807289 | None:intergenic | 45.0% | |
TGAGCTAGAACATTTCACCG+AGG | - | chr6.3:72806337-72806356 | MS.gene37786:CDS | 45.0% | |
TTGCTTGGGGATGGCTTAAT+TGG | + | chr6.3:72805668-72805687 | None:intergenic | 45.0% | |
TTGGGGATGGCTTAATTGGT+TGG | + | chr6.3:72805664-72805683 | None:intergenic | 45.0% | |
! | AGACAGGCTAGAAAAGGCAT+TGG | + | chr6.3:72807241-72807260 | None:intergenic | 45.0% |
! | TCCTGGAAGCATAAGTTGTG+TGG | + | chr6.3:72805586-72805605 | None:intergenic | 45.0% |
!! | AACCAGTATTGGCGTTGGTT+AGG | - | chr6.3:72804881-72804900 | MS.gene37786:intron | 45.0% |
!! | AAGCTAACCAGTATTGGCGT+TGG | - | chr6.3:72804876-72804895 | MS.gene37786:intron | 45.0% |
!! | GCTCTCTTGCTGTGCTATTT+AGG | - | chr6.3:72804681-72804700 | MS.gene37786:CDS | 45.0% |
CCGTGAGAGGTTTAGAAGAC+AGG | + | chr6.3:72807257-72807276 | None:intergenic | 50.0% | |
GCCACACAACTTATGCTTCC+AGG | - | chr6.3:72805582-72805601 | MS.gene37786:intron | 50.0% | |
TAACTTCGTGCCTCCAACCT+AGG | + | chr6.3:72805735-72805754 | None:intergenic | 50.0% | |
TGCCTAACCAACGCCAATAC+TGG | + | chr6.3:72804886-72804905 | None:intergenic | 50.0% | |
! | CAAGAACTTGCCTAGGTTGG+AGG | - | chr6.3:72805722-72805741 | MS.gene37786:CDS | 50.0% |
! | CATATATGACGGAGGCCAGA+TGG | - | chr6.3:72806752-72806771 | MS.gene37786:intron | 50.0% |
!! | TGGCCCTTATAGATGGTGGA+AGG | - | chr6.3:72806135-72806154 | MS.gene37786:CDS | 50.0% |
AGGGAAGCTGCAACTCAGGA+AGG | - | chr6.3:72807151-72807170 | MS.gene37786:intron | 55.0% | |
! | CTCTAGGGAAGCTGCAACTC+AGG | - | chr6.3:72807147-72807166 | MS.gene37786:intron | 55.0% |
CATGGGAGCCACAGCCACAG+AGG | - | chr6.3:72806870-72806889 | MS.gene37786:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 72804512 | 72807378 | 72804512 | ID=MS.gene37786 |
chr6.3 | mRNA | 72804512 | 72807378 | 72804512 | ID=MS.gene37786.t1;Parent=MS.gene37786 |
chr6.3 | exon | 72807153 | 72807378 | 72807153 | ID=MS.gene37786.t1.exon1;Parent=MS.gene37786.t1 |
chr6.3 | CDS | 72807153 | 72807378 | 72807153 | ID=cds.MS.gene37786.t1;Parent=MS.gene37786.t1 |
chr6.3 | exon | 72806022 | 72806394 | 72806022 | ID=MS.gene37786.t1.exon2;Parent=MS.gene37786.t1 |
chr6.3 | CDS | 72806022 | 72806394 | 72806022 | ID=cds.MS.gene37786.t1;Parent=MS.gene37786.t1 |
chr6.3 | exon | 72805635 | 72805743 | 72805635 | ID=MS.gene37786.t1.exon3;Parent=MS.gene37786.t1 |
chr6.3 | CDS | 72805635 | 72805743 | 72805635 | ID=cds.MS.gene37786.t1;Parent=MS.gene37786.t1 |
chr6.3 | exon | 72805521 | 72805594 | 72805521 | ID=MS.gene37786.t1.exon4;Parent=MS.gene37786.t1 |
chr6.3 | CDS | 72805521 | 72805594 | 72805521 | ID=cds.MS.gene37786.t1;Parent=MS.gene37786.t1 |
chr6.3 | exon | 72805280 | 72805418 | 72805280 | ID=MS.gene37786.t1.exon5;Parent=MS.gene37786.t1 |
chr6.3 | CDS | 72805280 | 72805418 | 72805280 | ID=cds.MS.gene37786.t1;Parent=MS.gene37786.t1 |
chr6.3 | exon | 72804909 | 72805157 | 72804909 | ID=MS.gene37786.t1.exon6;Parent=MS.gene37786.t1 |
chr6.3 | CDS | 72804909 | 72805157 | 72804909 | ID=cds.MS.gene37786.t1;Parent=MS.gene37786.t1 |
chr6.3 | exon | 72804512 | 72804805 | 72804512 | ID=MS.gene37786.t1.exon7;Parent=MS.gene37786.t1 |
chr6.3 | CDS | 72804512 | 72804805 | 72804512 | ID=cds.MS.gene37786.t1;Parent=MS.gene37786.t1 |
Gene Sequence |
Protein sequence |