AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38551


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38551.t1 MTR_3g031360 97.087 309 8 1 1 308 1 309 0.0 620
MS.gene38551.t1 MTR_1g022030 35.789 285 163 6 30 308 235 505 2.82e-45 160
MS.gene38551.t1 MTR_5g019790 38.672 256 135 7 61 308 206 447 1.11e-44 158
MS.gene38551.t1 MTR_2g008590 32.836 268 146 9 51 305 1007 1253 1.01e-26 110
MS.gene38551.t1 MTR_2g095720 91.892 37 3 0 173 209 4 40 3.04e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38551.t1 AT2G30170 64.360 289 98 3 23 308 12 298 2.07e-131 375
MS.gene38551.t1 AT2G30170 68.326 221 69 1 89 308 1 221 8.21e-111 320
MS.gene38551.t1 AT2G30170 63.319 229 79 3 23 248 12 238 1.35e-96 286
MS.gene38551.t1 AT2G30170 69.744 195 58 1 55 248 9 203 8.59e-96 283
MS.gene38551.t1 AT2G30170 63.684 190 65 2 23 210 12 199 1.03e-79 241
MS.gene38551.t1 AT2G30170 67.722 158 50 1 152 308 1 158 3.62e-77 233
MS.gene38551.t1 AT2G30170 68.323 161 50 1 89 248 1 161 8.59e-76 230
MS.gene38551.t1 AT4G16580 40.945 254 131 5 61 308 221 461 6.12e-52 177
MS.gene38551.t1 AT5G66720 33.013 312 176 6 4 308 126 411 2.96e-49 169
MS.gene38551.t1 AT5G66720 33.758 314 174 7 4 308 126 414 1.49e-48 167
MS.gene38551.t1 AT4G33500 34.000 250 142 8 61 303 484 717 9.57e-32 125

Find 66 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAACTTAACCCTGTAATT+AGG 0.255765 3.4:+61230680 MS.gene38551:CDS
GCTGTTGCTGATGGTGTCTC+TGG 0.289126 3.4:+61230988 MS.gene38551:CDS
GAGTTTACTAACCTAATTAC+AGG 0.316589 3.4:-61230691 None:intergenic
ATTATTCCCACGTGAATTGA+TGG 0.323223 3.4:+61231740 MS.gene38551:CDS
TTCTTTGTGAGTAACTATAA+TGG 0.353613 3.4:+61230955 MS.gene38551:CDS
ATGATCCTCAGATTCTTATA+AGG 0.360349 3.4:+61232014 MS.gene38551:CDS
CCATTGCATCAAGGTATGTT+TGG 0.361695 3.4:-61232478 None:intergenic
CTATTGATGAAAATGCTAAA+AGG 0.368498 3.4:+61230626 MS.gene38551:CDS
CCATGGTGGAAGAAAGTTCT+TGG 0.371744 3.4:+61234017 MS.gene38551:CDS
TTCAATATTGAGAGCTGTAA+TGG 0.381901 3.4:+61230555 MS.gene38551:CDS
GGTAAGTAATGTGGAGTTGA+TGG 0.402055 3.4:+61233404 MS.gene38551:intron
CAACGGTTAGAGCAATTTCA+TGG 0.406391 3.4:-61233479 None:intergenic
GGCCCTTGCCTCCAATGAAT+AGG 0.407307 3.4:-61233670 None:intergenic
GATGATATTACTGTAATTGT+TGG 0.415329 3.4:+61234143 MS.gene38551:CDS
AGCAAAGGCATTAGCTAACT+TGG 0.423045 3.4:+61233611 MS.gene38551:intron
CTCTCAGAGCTCAGTTGGTA+AGG 0.427916 3.4:-61232449 None:intergenic
GCCCTTGCCTCCAATGAATA+GGG 0.434182 3.4:-61233669 None:intergenic
ATTGCTATGCTTGAAAAGAA+TGG 0.435486 3.4:+61232215 MS.gene38551:CDS
TATTACTGTAATTGTTGGTC+AGG 0.450918 3.4:+61234148 MS.gene38551:CDS
ATTGCCAATGTTGGTGATTG+TGG 0.453444 3.4:+61232248 MS.gene38551:CDS
AACAAAGATGTTTCTGAGGC+TGG 0.460161 3.4:+61233504 MS.gene38551:CDS
TTGCTATGCTTGAAAAGAAT+GGG 0.461252 3.4:+61232216 MS.gene38551:CDS
GGATTACGAGTTATTCGTAA+TGG 0.469160 3.4:+61232269 MS.gene38551:CDS
GTTCTTGGAATGAAGTTGAC+AGG 0.490239 3.4:+61234032 MS.gene38551:CDS
TGATTCTCCCTATTCATTGG+AGG 0.500392 3.4:+61233662 MS.gene38551:CDS
CTCCCTATTCATTGGAGGCA+AGG 0.505302 3.4:+61233667 MS.gene38551:CDS
GGAGTTATTGCTGTTGCTGA+TGG 0.506025 3.4:+61230979 MS.gene38551:CDS
TCCCTATTCATTGGAGGCAA+GGG 0.506317 3.4:+61233668 MS.gene38551:CDS
CTGTTGCTGATGGTGTCTCT+GGG 0.512852 3.4:+61230989 MS.gene38551:CDS
AATTCACGTGGGAATAATGA+AGG 0.517953 3.4:-61231735 None:intergenic
TTGTGAAGGTTGAGAAAGGT+GGG 0.518923 3.4:+61230923 MS.gene38551:intron
GCTTCACAGTTGGGCTGAAG+AGG 0.521649 3.4:+61231704 MS.gene38551:intron
TTTGTGAAGGTTGAGAAAGG+TGG 0.532355 3.4:+61230922 MS.gene38551:intron
CCAAGAACTTTCTTCCACCA+TGG 0.538506 3.4:-61234017 None:intergenic
CAACCCTCTCAGAGCTCAGT+TGG 0.540376 3.4:-61232454 None:intergenic
GTAATGTTCTTGTGGAGAAG+TGG 0.542397 3.4:-61232417 None:intergenic
AGAAACATCTTTGTTTGCAA+CGG 0.553090 3.4:-61233496 None:intergenic
CATGCTGCTACATTCTCTAC+AGG 0.556023 3.4:+61232043 MS.gene38551:CDS
GTGTTTGTGAAGGTTGAGAA+AGG 0.557244 3.4:+61230919 MS.gene38551:intron
TTTGTGAGTAACTATAATGG+TGG 0.557472 3.4:+61230958 MS.gene38551:CDS
CAGTCAAAGTAATGTTCTTG+TGG 0.563107 3.4:-61232425 None:intergenic
ACAATTGTGATGGGATCTGA+TGG 0.564567 3.4:+61233435 MS.gene38551:CDS
TAAATGTTACCATTGCATCA+AGG 0.570236 3.4:-61232487 None:intergenic
AGTAATGTGGAGTTGATGGA+AGG 0.579559 3.4:+61233408 MS.gene38551:CDS
TTTACTTTATAGGTCATCAG+AGG 0.586977 3.4:+61230781 MS.gene38551:intron
GAAGGAGACACAATTGTGAT+GGG 0.587185 3.4:+61233426 MS.gene38551:CDS
CCAAACATACCTTGATGCAA+TGG 0.590788 3.4:+61232478 MS.gene38551:CDS
TTCATTGGAGGCAAGGGCCA+AGG 0.591316 3.4:+61233674 MS.gene38551:CDS
CTTGGCAAACAGTCATGCAA+TGG 0.591819 3.4:+61233629 MS.gene38551:CDS
GGAAGGAGACACAATTGTGA+TGG 0.597926 3.4:+61233425 MS.gene38551:CDS
TCTCAGAGCTCAGTTGGTAA+GGG 0.598900 3.4:-61232448 None:intergenic
AGGAAAACAGGTAAGTAATG+TGG 0.599550 3.4:+61233395 MS.gene38551:intron
TAATCCACAATCACCAACAT+TGG 0.602187 3.4:-61232252 None:intergenic
CAACTGAGCTCTGAGAGGGT+TGG 0.613932 3.4:+61232455 MS.gene38551:CDS
TGCAAACAAAGATGTTTCTG+AGG 0.619881 3.4:+61233500 MS.gene38551:CDS
AATCTGAAGATTGCCAATGT+TGG 0.621213 3.4:+61232239 MS.gene38551:CDS
AGTTTACTAACCTAATTACA+GGG 0.624096 3.4:-61230690 None:intergenic
TTACCAACTGAGCTCTGAGA+GGG 0.624350 3.4:+61232451 MS.gene38551:CDS
TTGATGAAAATGCTAAAAGG+AGG 0.632849 3.4:+61230629 MS.gene38551:CDS
GCTTTCCTTATAAGAATCTG+AGG 0.633109 3.4:-61232019 None:intergenic
CTTACCAACTGAGCTCTGAG+AGG 0.648246 3.4:+61232450 MS.gene38551:CDS
GCATTAGCCATCAATTCACG+TGG 0.652412 3.4:-61231747 None:intergenic
GAAGATATGTTATGAATGTG+TGG 0.660697 3.4:-61230604 None:intergenic
TGTGAAGGTTGAGAAAGGTG+GGG 0.664939 3.4:+61230924 MS.gene38551:intron
CAATTGTGATGGGATCTGAT+GGG 0.694946 3.4:+61233436 MS.gene38551:CDS
CATTAGCCATCAATTCACGT+GGG 0.738708 3.4:-61231746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTTGTTTATCATATA+AGG - chr3.4:61231299-61231318 None:intergenic 10.0%
!! TATATTTGTTTATCATATAA+GGG - chr3.4:61231298-61231317 None:intergenic 10.0%
!!! AGCAAATATAATATTATTTT+CGG - chr3.4:61231835-61231854 None:intergenic 10.0%
!! AAAAATACAATAAAGAGTTT+AGG - chr3.4:61233214-61233233 None:intergenic 15.0%
!! AAAATACAATAAAGAGTTTA+GGG - chr3.4:61233213-61233232 None:intergenic 15.0%
!!! TAATGCTTAATACTTTTTTT+AGG + chr3.4:61230734-61230753 MS.gene38551:intron 15.0%
!! AAATACAATAAAGAGTTTAG+GGG - chr3.4:61233212-61233231 None:intergenic 20.0%
!! ACTATGGAAAATAATAACAA+AGG - chr3.4:61233170-61233189 None:intergenic 20.0%
!! GATGAGGAAAAAAATATATA+GGG - chr3.4:61232331-61232350 None:intergenic 20.0%
!! GTAATATCTCATGTTATAAA+AGG + chr3.4:61232291-61232310 MS.gene38551:intron 20.0%
!!! AAGTTTATCCTCTTTTATTT+AGG + chr3.4:61232080-61232099 MS.gene38551:intron 20.0%
!!! AGAATGTGTTTAAACTTTTT+TGG - chr3.4:61233887-61233906 None:intergenic 20.0%
!!! AGAATTACTATTACCTTTTT+TGG - chr3.4:61230842-61230861 None:intergenic 20.0%
!!! ATTTAGTTATTTCTTTACCT+TGG - chr3.4:61233694-61233713 None:intergenic 20.0%
!!! CTATATATTTTTTTCCTCAT+CGG + chr3.4:61232330-61232349 MS.gene38551:intron 20.0%
!!! CTATTTTATGAAATTATCAC+CGG - chr3.4:61233003-61233022 None:intergenic 20.0%
!!! TTACTTTTTCTATTGTAAAC+AGG + chr3.4:61234110-61234129 MS.gene38551:intron 20.0%
!!! TTATAATTTTGTACAAGATG+AGG + chr3.4:61231770-61231789 MS.gene38551:CDS 20.0%
!!! TTGATCTTTTTACTCAAAAT+TGG - chr3.4:61232109-61232128 None:intergenic 20.0%
! AACAGAAATACATTTGTATC+AGG - chr3.4:61233351-61233370 None:intergenic 25.0%
! AATACAATAAAGAGTTTAGG+GGG - chr3.4:61233211-61233230 None:intergenic 25.0%
! AATAGTCAATGAAGAGAAAA+TGG + chr3.4:61232634-61232653 MS.gene38551:intron 25.0%
! AGAAAACTGAAAACAATTTG+AGG + chr3.4:61231149-61231168 MS.gene38551:intron 25.0%
! AGTTTACTAACCTAATTACA+GGG - chr3.4:61230693-61230712 None:intergenic 25.0%
! ATCTAAACGTGAAAACAAAT+AGG + chr3.4:61231476-61231495 MS.gene38551:intron 25.0%
! CAATATGATAACACATAACT+TGG - chr3.4:61233272-61233291 None:intergenic 25.0%
! CACATACACATTTATATATG+AGG - chr3.4:61232613-61232632 None:intergenic 25.0%
! CGATGAGGAAAAAAATATAT+AGG - chr3.4:61232332-61232351 None:intergenic 25.0%
! CTAAATTGTTTATGCAAACA+GGG + chr3.4:61231501-61231520 MS.gene38551:intron 25.0%
! CTAATGTACAACAATAACTA+TGG - chr3.4:61233186-61233205 None:intergenic 25.0%
! CTATTGATGAAAATGCTAAA+AGG + chr3.4:61230626-61230645 MS.gene38551:CDS 25.0%
! CTGCAAAATCAAAATATTCA+AGG - chr3.4:61231987-61232006 None:intergenic 25.0%
! GAAAATAATAACAAAGGAAC+TGG - chr3.4:61233164-61233183 None:intergenic 25.0%
! GATGATATTACTGTAATTGT+TGG + chr3.4:61234143-61234162 MS.gene38551:CDS 25.0%
! GTTAAAATAGCTTAGTTTCT+TGG + chr3.4:61233234-61233253 MS.gene38551:intron 25.0%
! TGGAAAATGACTTCTTAATA+GGG + chr3.4:61233786-61233805 MS.gene38551:intron 25.0%
! TTCTTTGTGAGTAACTATAA+TGG + chr3.4:61230955-61230974 MS.gene38551:CDS 25.0%
! TTTAGGTCTATGTTAGAATT+GGG + chr3.4:61230751-61230770 MS.gene38551:intron 25.0%
! TTTCACGGAAAAAATACATT+GGG - chr3.4:61231407-61231426 None:intergenic 25.0%
!! TTTGTTACTTGTTAAAGTTG+TGG + chr3.4:61230897-61230916 MS.gene38551:intron 25.0%
!! TTTTCACGGAAAAAATACAT+TGG - chr3.4:61231408-61231427 None:intergenic 25.0%
!!! ATTAGTTTGCGTAAAATAGA+TGG + chr3.4:61233912-61233931 MS.gene38551:intron 25.0%
!!! CTTGAATATTTTGATTTTGC+AGG + chr3.4:61231985-61232004 MS.gene38551:intron 25.0%
!!! GTATTTTTTCCGTGAAAATA+TGG + chr3.4:61231410-61231429 MS.gene38551:intron 25.0%
!!! TATTTGTTTTCACGTTTAGA+TGG - chr3.4:61231477-61231496 None:intergenic 25.0%
!!! TTTTAGGTCTATGTTAGAAT+TGG + chr3.4:61230750-61230769 MS.gene38551:intron 25.0%
!!! TTTTTAGTCAACTTGTTCAA+TGG - chr3.4:61233844-61233863 None:intergenic 25.0%
AAAGATTACTTGACCTGAAA+AGG - chr3.4:61232396-61232415 None:intergenic 30.0%
AAGATTACTTGACCTGAAAA+GGG - chr3.4:61232395-61232414 None:intergenic 30.0%
AAGTGACACTTATTATGAGA+CGG - chr3.4:61232773-61232792 None:intergenic 30.0%
ACAAAGTCAAGTGTTTATTG+TGG - chr3.4:61231560-61231579 None:intergenic 30.0%
ACAGTTCTTAAGGAAATGAT+TGG - chr3.4:61232872-61232891 None:intergenic 30.0%
ATACTGATCAACAAAGAAGA+AGG - chr3.4:61233536-61233555 None:intergenic 30.0%
ATGATCCTCAGATTCTTATA+AGG + chr3.4:61232014-61232033 MS.gene38551:CDS 30.0%
ATGGTTATATGCATGTTGTT+TGG + chr3.4:61231936-61231955 MS.gene38551:intron 30.0%
ATTCAAGGAATCAACATGTT+TGG - chr3.4:61231972-61231991 None:intergenic 30.0%
ATTGCTATGCTTGAAAAGAA+TGG + chr3.4:61232215-61232234 MS.gene38551:CDS 30.0%
ATTGGCAACCTAAATAAAAG+AGG - chr3.4:61232091-61232110 None:intergenic 30.0%
ATTGGTTGTGGTGATATTAA+TGG - chr3.4:61232854-61232873 None:intergenic 30.0%
ATTGTCAATTTGACTACTTC+TGG + chr3.4:61233766-61233785 MS.gene38551:intron 30.0%
CAAAGTCAAGTGTTTATTGT+GGG - chr3.4:61231559-61231578 None:intergenic 30.0%
CTGGAAAATGACTTCTTAAT+AGG + chr3.4:61233785-61233804 MS.gene38551:intron 30.0%
GAAGATATGTTATGAATGTG+TGG - chr3.4:61230607-61230626 None:intergenic 30.0%
GAGCAGTAATTCAAAAAGAA+TGG + chr3.4:61231917-61231936 MS.gene38551:intron 30.0%
GAGTTTACTAACCTAATTAC+AGG - chr3.4:61230694-61230713 None:intergenic 30.0%
GCTAAATTGTTTATGCAAAC+AGG + chr3.4:61231500-61231519 MS.gene38551:intron 30.0%
TAAATGTTACCATTGCATCA+AGG - chr3.4:61232490-61232509 None:intergenic 30.0%
TACACATTTATATATGAGGC+TGG - chr3.4:61232609-61232628 None:intergenic 30.0%
TATTACTGTAATTGTTGGTC+AGG + chr3.4:61234148-61234167 MS.gene38551:CDS 30.0%
TCATAGACAAGAAATTGTTG+AGG - chr3.4:61232181-61232200 None:intergenic 30.0%
TTCAATATTGAGAGCTGTAA+TGG + chr3.4:61230555-61230574 MS.gene38551:CDS 30.0%
TTGATGAAAATGCTAAAAGG+AGG + chr3.4:61230629-61230648 MS.gene38551:CDS 30.0%
TTGCAAGTGCTTAATTAAGT+GGG + chr3.4:61231346-61231365 MS.gene38551:intron 30.0%
TTGCTATGCTTGAAAAGAAT+GGG + chr3.4:61232216-61232235 MS.gene38551:CDS 30.0%
TTGTTGAGGCATATATATTG+TGG - chr3.4:61232167-61232186 None:intergenic 30.0%
TTTACTTTATAGGTCATCAG+AGG + chr3.4:61230781-61230800 MS.gene38551:intron 30.0%
TTTGTGAGTAACTATAATGG+TGG + chr3.4:61230958-61230977 MS.gene38551:CDS 30.0%
! AGAAACATCTTTGTTTGCAA+CGG - chr3.4:61233499-61233518 None:intergenic 30.0%
! ATTCATTTTGTTGCTAGCAA+AGG + chr3.4:61233596-61233615 MS.gene38551:intron 30.0%
! CTTTTTCTATTGTAAACAGG+AGG + chr3.4:61234113-61234132 MS.gene38551:intron 30.0%
! TAATTTTGTACAAGATGAGG+AGG + chr3.4:61231773-61231792 MS.gene38551:CDS 30.0%
! TCTATGTTAGAATTGGGTTT+TGG + chr3.4:61230757-61230776 MS.gene38551:intron 30.0%
! TGTTGAGAACTTTAATTTCG+CGG + chr3.4:61232365-61232384 MS.gene38551:intron 30.0%
! TTAACCCAAAGCCAATATTT+TGG - chr3.4:61233136-61233155 None:intergenic 30.0%
! TTGTAGCTTCCATATTTTCA+CGG - chr3.4:61231422-61231441 None:intergenic 30.0%
! TTTCTTTTACTAACCTTGAC+AGG + chr3.4:61233375-61233394 MS.gene38551:intron 30.0%
!! AAAATATTGGCTTTGGGTTA+AGG + chr3.4:61233135-61233154 MS.gene38551:intron 30.0%
!! AAATATTGGCTTTGGGTTAA+GGG + chr3.4:61233136-61233155 MS.gene38551:intron 30.0%
!! CTTATTTCTACATGCTTTCT+AGG + chr3.4:61231096-61231115 MS.gene38551:intron 30.0%
!! TTTTGATTCTCCCTATTCAT+TGG + chr3.4:61233659-61233678 MS.gene38551:CDS 30.0%
!!! ACTATTACCTTTTTTGGATG+TGG - chr3.4:61230836-61230855 None:intergenic 30.0%
!!! GGGTTTTGGTTTTACTTTAT+AGG + chr3.4:61230771-61230790 MS.gene38551:intron 30.0%
AAATGAGACTATATCCCCTT+TGG - chr3.4:61233324-61233343 None:intergenic 35.0%
AATAGCTTAGTTTCTTGGCT+AGG + chr3.4:61233239-61233258 MS.gene38551:intron 35.0%
AATCTGAAGATTGCCAATGT+TGG + chr3.4:61232239-61232258 MS.gene38551:CDS 35.0%
AATTCACGTGGGAATAATGA+AGG - chr3.4:61231738-61231757 None:intergenic 35.0%
ACACAACACAACTTTCCAAA+GGG + chr3.4:61233306-61233325 MS.gene38551:intron 35.0%
AGGAAAACAGGTAAGTAATG+TGG + chr3.4:61233395-61233414 MS.gene38551:intron 35.0%
AGTAAAGTGAAGACAGATAG+AGG - chr3.4:61232561-61232580 None:intergenic 35.0%
ATAGCTTAGTTTCTTGGCTA+GGG + chr3.4:61233240-61233259 MS.gene38551:intron 35.0%
ATTATTCCCACGTGAATTGA+TGG + chr3.4:61231740-61231759 MS.gene38551:CDS 35.0%
CAATCTGAGGAAGAAAGTTT+AGG - chr3.4:61232683-61232702 None:intergenic 35.0%
CAGAACTTAACCCTGTAATT+AGG + chr3.4:61230680-61230699 MS.gene38551:CDS 35.0%
CAGTCAAAGTAATGTTCTTG+TGG - chr3.4:61232428-61232447 None:intergenic 35.0%
CCTTATTCCACATCCAAAAA+AGG + chr3.4:61230826-61230845 MS.gene38551:CDS 35.0%
CTTACATTAGACGTACGTTT+GGG + chr3.4:61231450-61231469 MS.gene38551:intron 35.0%
CTTCTTTGTTGATCAGTATG+AGG + chr3.4:61233537-61233556 MS.gene38551:intron 35.0%
GCTTTCCTTATAAGAATCTG+AGG - chr3.4:61232022-61232041 None:intergenic 35.0%
GGATTACGAGTTATTCGTAA+TGG + chr3.4:61232269-61232288 MS.gene38551:CDS 35.0%
GTTGCAAGTGCTTAATTAAG+TGG + chr3.4:61231345-61231364 MS.gene38551:intron 35.0%
TAAAGTTGTGGTGTTTGTGA+AGG + chr3.4:61230909-61230928 MS.gene38551:intron 35.0%
TAATCCACAATCACCAACAT+TGG - chr3.4:61232255-61232274 None:intergenic 35.0%
TAATTAAGCACTTGCAACAG+AGG - chr3.4:61231343-61231362 None:intergenic 35.0%
TACACAACACAACTTTCCAA+AGG + chr3.4:61233305-61233324 MS.gene38551:intron 35.0%
TCAGTATCTGCGTTTAGTTA+CGG - chr3.4:61231801-61231820 None:intergenic 35.0%
TGCTTAATTAAGTGGGTGTT+TGG + chr3.4:61231353-61231372 MS.gene38551:intron 35.0%
TTACATTAGACGTACGTTTG+GGG + chr3.4:61231451-61231470 MS.gene38551:intron 35.0%
TTTCCTACTGGAAGAACTTA+CGG + chr3.4:61231038-61231057 MS.gene38551:intron 35.0%
! CAGAGGTTTCATTTTCTGTT+GGG + chr3.4:61230798-61230817 MS.gene38551:CDS 35.0%
! CGATGCTGCATAGAATTTTT+GGG + chr3.4:61233098-61233117 MS.gene38551:intron 35.0%
! CTTAAGGAAATGATTGGTTG+TGG - chr3.4:61232866-61232885 None:intergenic 35.0%
! TCAGAGGTTTCATTTTCTGT+TGG + chr3.4:61230797-61230816 MS.gene38551:CDS 35.0%
! TCGATGCTGCATAGAATTTT+TGG + chr3.4:61233097-61233116 MS.gene38551:intron 35.0%
! TGAAAACAATTTGAGGTCTC+AGG + chr3.4:61231156-61231175 MS.gene38551:intron 35.0%
! TGCAAACAAAGATGTTTCTG+AGG + chr3.4:61233500-61233519 MS.gene38551:CDS 35.0%
!! AATATTGGCTTTGGGTTAAG+GGG + chr3.4:61233137-61233156 MS.gene38551:intron 35.0%
!! TCAGCCAAAATATTGGCTTT+GGG + chr3.4:61233129-61233148 MS.gene38551:intron 35.0%
!!! CCTTTTTTGGATGTGGAATA+AGG - chr3.4:61230829-61230848 None:intergenic 35.0%
AATGCTACACTAGCATGAGA+CGG + chr3.4:61232902-61232921 MS.gene38551:intron 40.0%
ACTAACCTTGACAGGAAAAC+AGG + chr3.4:61233383-61233402 MS.gene38551:intron 40.0%
ACTGTCTCATTCTTTCCTAC+TGG + chr3.4:61231026-61231045 MS.gene38551:intron 40.0%
CAACGGTTAGAGCAATTTCA+TGG - chr3.4:61233482-61233501 None:intergenic 40.0%
CACAACACAACTTTCCAAAG+GGG + chr3.4:61233307-61233326 MS.gene38551:intron 40.0%
CATTAGCCATCAATTCACGT+GGG - chr3.4:61231749-61231768 None:intergenic 40.0%
CCAAACATACCTTGATGCAA+TGG + chr3.4:61232478-61232497 MS.gene38551:CDS 40.0%
CCAAACGTACGTCTAATGTA+AGG - chr3.4:61231452-61231471 None:intergenic 40.0%
CCATTGCATCAAGGTATGTT+TGG - chr3.4:61232481-61232500 None:intergenic 40.0%
CCTTACATTAGACGTACGTT+TGG + chr3.4:61231449-61231468 MS.gene38551:intron 40.0%
CTCATGCTAGTGTAGCATTT+GGG - chr3.4:61232901-61232920 None:intergenic 40.0%
CTTCAGATTGAAGCTATGTC+TGG - chr3.4:61233075-61233094 None:intergenic 40.0%
GAAGGAGACACAATTGTGAT+GGG + chr3.4:61233426-61233445 MS.gene38551:CDS 40.0%
GAGAGATTGTTGTGTAGCAT+CGG - chr3.4:61232749-61232768 None:intergenic 40.0%
GAGGAATTGCGATCAATTGT+AGG + chr3.4:61233556-61233575 MS.gene38551:intron 40.0%
GGTAAGTAATGTGGAGTTGA+TGG + chr3.4:61233404-61233423 MS.gene38551:intron 40.0%
GTAATGTTCTTGTGGAGAAG+TGG - chr3.4:61232420-61232439 None:intergenic 40.0%
GTGTTTGTGAAGGTTGAGAA+AGG + chr3.4:61230919-61230938 MS.gene38551:intron 40.0%
GTTCTTGGAATGAAGTTGAC+AGG + chr3.4:61234032-61234051 MS.gene38551:CDS 40.0%
TAGTTGTCTGTCTCAATCTG+AGG - chr3.4:61232696-61232715 None:intergenic 40.0%
TCACGTGTCAGCCAAAATAT+TGG + chr3.4:61233122-61233141 MS.gene38551:intron 40.0%
TCTCATGCTAGTGTAGCATT+TGG - chr3.4:61232902-61232921 None:intergenic 40.0%
TCTGAGGAAGAAAGTTTAGG+TGG - chr3.4:61232680-61232699 None:intergenic 40.0%
TGATTCTCCCTATTCATTGG+AGG + chr3.4:61233662-61233681 MS.gene38551:CDS 40.0%
TTGTGAAGGTTGAGAAAGGT+GGG + chr3.4:61230923-61230942 MS.gene38551:intron 40.0%
TTGTGTCATGCTTCACAGTT+GGG + chr3.4:61231695-61231714 MS.gene38551:intron 40.0%
TTTCCGTAAGTTCTTCCAGT+AGG - chr3.4:61231044-61231063 None:intergenic 40.0%
TTTGTGAAGGTTGAGAAAGG+TGG + chr3.4:61230922-61230941 MS.gene38551:intron 40.0%
TTTGTGTCATGCTTCACAGT+TGG + chr3.4:61231694-61231713 MS.gene38551:intron 40.0%
! ACAATTGTGATGGGATCTGA+TGG + chr3.4:61233435-61233454 MS.gene38551:CDS 40.0%
! ACAATTTGAGGTCTCAGGAT+TGG + chr3.4:61231161-61231180 MS.gene38551:intron 40.0%
! ACTTACCTGTTTTCCTGTCA+AGG - chr3.4:61233391-61233410 None:intergenic 40.0%
! CAATTGTGATGGGATCTGAT+GGG + chr3.4:61233436-61233455 MS.gene38551:CDS 40.0%
! CATTCAAAGTGTTTCCGATG+AGG - chr3.4:61232347-61232366 None:intergenic 40.0%
! GCATTGTCAACGATTTTCCA+GGG + chr3.4:61233984-61234003 MS.gene38551:intron 40.0%
! GTGTAGCATCGGATTATTCT+AGG - chr3.4:61232738-61232757 None:intergenic 40.0%
! TGCATTGTCAACGATTTTCC+AGG + chr3.4:61233983-61234002 MS.gene38551:intron 40.0%
!! AACAAAGATGTTTCTGAGGC+TGG + chr3.4:61233504-61233523 MS.gene38551:CDS 40.0%
!! AGCAAAGGCATTAGCTAACT+TGG + chr3.4:61233611-61233630 MS.gene38551:intron 40.0%
!! AGTAATGTGGAGTTGATGGA+AGG + chr3.4:61233408-61233427 MS.gene38551:CDS 40.0%
!! ATTGCCAATGTTGGTGATTG+TGG + chr3.4:61232248-61232267 MS.gene38551:CDS 40.0%
!! GTCAGCCAAAATATTGGCTT+TGG + chr3.4:61233128-61233147 MS.gene38551:intron 40.0%
CATGCTGCTACATTCTCTAC+AGG + chr3.4:61232043-61232062 MS.gene38551:CDS 45.0%
CCAAGAACTTTCTTCCACCA+TGG - chr3.4:61234020-61234039 None:intergenic 45.0%
CGACGTTGACACATAAACAC+CGG + chr3.4:61232981-61233000 MS.gene38551:intron 45.0%
CTTGGCAAACAGTCATGCAA+TGG + chr3.4:61233629-61233648 MS.gene38551:CDS 45.0%
GCATTAGCCATCAATTCACG+TGG - chr3.4:61231750-61231769 None:intergenic 45.0%
GGAAGGAGACACAATTGTGA+TGG + chr3.4:61233425-61233444 MS.gene38551:CDS 45.0%
GTGAAGACAGATAGAGGAGT+AGG - chr3.4:61232555-61232574 None:intergenic 45.0%
TAGTTTCTTGGCTAGGGTGA+AGG + chr3.4:61233246-61233265 MS.gene38551:intron 45.0%
TCCCTATTCATTGGAGGCAA+GGG + chr3.4:61233668-61233687 MS.gene38551:CDS 45.0%
TGGAATGAAGTTGACAGGTG+TGG + chr3.4:61234037-61234056 MS.gene38551:intron 45.0%
TGGGTTGTGCACAGTTCTTA+AGG - chr3.4:61232882-61232901 None:intergenic 45.0%
TGTGAAGGTTGAGAAAGGTG+GGG + chr3.4:61230924-61230943 MS.gene38551:intron 45.0%
! CCATGGTGGAAGAAAGTTCT+TGG + chr3.4:61234017-61234036 MS.gene38551:CDS 45.0%
! GGAGTTATTGCTGTTGCTGA+TGG + chr3.4:61230979-61230998 MS.gene38551:CDS 45.0%
! TAAGTGGGTGTTTGGAACTG+CGG + chr3.4:61231361-61231380 MS.gene38551:intron 45.0%
!! TCTCAGAGCTCAGTTGGTAA+GGG - chr3.4:61232451-61232470 None:intergenic 45.0%
!! TTACCAACTGAGCTCTGAGA+GGG + chr3.4:61232451-61232470 MS.gene38551:CDS 45.0%
!!! CACCTGTGTCGTTTTCATGT+CGG + chr3.4:61233040-61233059 MS.gene38551:intron 45.0%
ACCATGGAGCTTCAAAACCC+TGG - chr3.4:61234004-61234023 None:intergenic 50.0%
CACCGACATGAAAACGACAC+AGG - chr3.4:61233045-61233064 None:intergenic 50.0%
CGACATGAAAACGACACAGG+TGG - chr3.4:61233042-61233061 None:intergenic 50.0%
CTACACTAGCATGAGACGGA+AGG + chr3.4:61232906-61232925 MS.gene38551:intron 50.0%
CTCCCTATTCATTGGAGGCA+AGG + chr3.4:61233667-61233686 MS.gene38551:CDS 50.0%
GCCCTTGCCTCCAATGAATA+GGG - chr3.4:61233672-61233691 None:intergenic 50.0%
TGTCCAAAGACCGACTACTC+CGG - chr3.4:61231190-61231209 None:intergenic 50.0%
! CTCTCAGAGCTCAGTTGGTA+AGG - chr3.4:61232452-61232471 None:intergenic 50.0%
! CTGTTGCTGATGGTGTCTCT+GGG + chr3.4:61230989-61231008 MS.gene38551:CDS 50.0%
! TTTCGCGGTGTTCCCTTTTC+AGG + chr3.4:61232380-61232399 MS.gene38551:intron 50.0%
!! CTTACCAACTGAGCTCTGAG+AGG + chr3.4:61232450-61232469 MS.gene38551:CDS 50.0%
!!! AGGGTTTTGAAGCTCCATGG+TGG + chr3.4:61234003-61234022 MS.gene38551:intron 50.0%
!!! CTGTGTCGTTTTCATGTCGG+TGG + chr3.4:61233043-61233062 MS.gene38551:intron 50.0%
!!! TCCAGGGTTTTGAAGCTCCA+TGG + chr3.4:61234000-61234019 MS.gene38551:intron 50.0%
!!! TGTCGTTTTCATGTCGGTGG+CGG + chr3.4:61233046-61233065 MS.gene38551:intron 50.0%
CAACCCTCTCAGAGCTCAGT+TGG - chr3.4:61232457-61232476 None:intergenic 55.0%
GCTTCACAGTTGGGCTGAAG+AGG + chr3.4:61231704-61231723 MS.gene38551:intron 55.0%
GGAGTAGTCGGTCTTTGGAC+AGG + chr3.4:61231189-61231208 MS.gene38551:intron 55.0%
GGCCCTTGCCTCCAATGAAT+AGG - chr3.4:61233673-61233692 None:intergenic 55.0%
TCTCCGGAGTAGTCGGTCTT+TGG + chr3.4:61231184-61231203 MS.gene38551:intron 55.0%
TTCATTGGAGGCAAGGGCCA+AGG + chr3.4:61233674-61233693 MS.gene38551:CDS 55.0%
! GCTGTTGCTGATGGTGTCTC+TGG + chr3.4:61230988-61231007 MS.gene38551:CDS 55.0%
! GGGTGTTTGGAACTGCGGTA+GGG + chr3.4:61231366-61231385 MS.gene38551:intron 55.0%
! TGGGTGTTTGGAACTGCGGT+AGG + chr3.4:61231365-61231384 MS.gene38551:intron 55.0%
!! CAACTGAGCTCTGAGAGGGT+TGG + chr3.4:61232455-61232474 MS.gene38551:CDS 55.0%
!! GAGGTCTCAGGATTGGTCTC+CGG + chr3.4:61231168-61231187 MS.gene38551:intron 55.0%
!! GGATTGGTCTCCGGAGTAGT+CGG + chr3.4:61231177-61231196 MS.gene38551:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 61230547 61234184 61230547 ID=MS.gene38551
chr3.4 mRNA 61230547 61234184 61230547 ID=MS.gene38551.t1;Parent=MS.gene38551
chr3.4 exon 61230547 61230701 61230547 ID=MS.gene38551.t1.exon1;Parent=MS.gene38551.t1
chr3.4 CDS 61230547 61230701 61230547 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61230793 61230847 61230793 ID=MS.gene38551.t1.exon2;Parent=MS.gene38551.t1
chr3.4 CDS 61230793 61230847 61230793 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61230931 61231010 61230931 ID=MS.gene38551.t1.exon3;Parent=MS.gene38551.t1
chr3.4 CDS 61230931 61231010 61230931 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61231713 61231794 61231713 ID=MS.gene38551.t1.exon4;Parent=MS.gene38551.t1
chr3.4 CDS 61231713 61231794 61231713 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61232007 61232077 61232007 ID=MS.gene38551.t1.exon5;Parent=MS.gene38551.t1
chr3.4 CDS 61232007 61232077 61232007 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61232211 61232290 61232211 ID=MS.gene38551.t1.exon6;Parent=MS.gene38551.t1
chr3.4 CDS 61232211 61232290 61232211 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61232402 61232499 61232402 ID=MS.gene38551.t1.exon7;Parent=MS.gene38551.t1
chr3.4 CDS 61232402 61232499 61232402 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61233405 61233525 61233405 ID=MS.gene38551.t1.exon8;Parent=MS.gene38551.t1
chr3.4 CDS 61233405 61233525 61233405 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61233613 61233695 61233613 ID=MS.gene38551.t1.exon9;Parent=MS.gene38551.t1
chr3.4 CDS 61233613 61233695 61233613 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61234005 61234053 61234005 ID=MS.gene38551.t1.exon10;Parent=MS.gene38551.t1
chr3.4 CDS 61234005 61234053 61234005 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
chr3.4 exon 61234132 61234184 61234132 ID=MS.gene38551.t1.exon11;Parent=MS.gene38551.t1
chr3.4 CDS 61234132 61234184 61234132 ID=cds.MS.gene38551.t1;Parent=MS.gene38551.t1
Gene Sequence

>MS.gene38551

ATGGCTATTTCAATATTGAGAGCTGTAATGGTGTCTAATTCTCATTGTCAATCTCAACCACACATTCATAACATATCTTCTATTGATGAAAATGCTAAAAGGAGGAAAAGAGTAGTTTTCTCTACTCATTCTTCAGAACTTAACCCTGTAATTAGGTTAGTAAACTCTTCATTTTTTGTTTAACTATTAATGCTTAATACTTTTTTTAGGTCTATGTTAGAATTGGGTTTTGGTTTTACTTTATAGGTCATCAGAGGTTTCATTTTCTGTTGGGACTTGCCTTATTCCACATCCAAAAAAGGTAATAGTAATTCTATAGTTAACACAAGTTTAGATGTTTTTTTTGTGTATTTGTTACTTGTTAAAGTTGTGGTGTTTGTGAAGGTTGAGAAAGGTGGGGAAGATGCTTTCTTTGTGAGTAACTATAATGGTGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGGTATGCTACTTACTCACTGTCTCATTCTTTCCTACTGGAAGAACTTACGGAAACAACTTATGACATGTTTATAAATTGTTTTGAGCTTATTTCTACATGCTTTCTAGGATAGTTTATGAAAATAGTTTATAGTTTATTAGAAAACTGAAAACAATTTGAGGTCTCAGGATTGGTCTCCGGAGTAGTCGGTCTTTGGACAGGATATCGAGTTTCAAAAATAAAAATGAAAAAAATTGACTTTATTTTAATCTTTTGTTGTAGAACAGAAATTGCGTATATATAAGCCCTTATATGATAAACAAATATATTATAAGCTTATAAAATAAGAACCTCTGTTGCAAGTGCTTAATTAAGTGGGTGTTTGGAACTGCGGTAGGGCTGAAATTCTCGCGTCCCAATGTATTTTTTCCGTGAAAATATGGAAGCTACAATTTGTAGCCTTACATTAGACGTACGTTTGGGGCCATCTAAACGTGAAAACAAATAGGTGCTAAATTGTTTATGCAAACAGGGCATTACTATCATTAAACAAACACAAAACAACTCCCACAATAAACACTTGACTTTGTTTTGCTCAAAAAAGATAAACACTTGACTTTGTTATTCAGTTAGAAATTTAGATGTTGTTGTTATATATGTATCATATTGAGATCTTGTCTTGTGATAATTTGTCTCAACATGTTTTTGTGTCATGCTTCACAGTTGGGCTGAAGAGGATGTAGATCCTTCATTATTCCCACGTGAATTGATGGCTAATGCTTATAATTTTGTACAAGATGAGGAGGTACCGTAACTAAACGCAGATACTGATTATGAGTATTCCGAAAATAATATTATATTTGCTAGAATTTTACATTCATTCTTTTGAAATTTAGAATGATATCTGTTTTTTTATCTTTAAAGTTTGAGCAGTAATTCAAAAAGAATGGTTATATGCATGTTGTTTGGTAACAAAGTACCAAACATGTTGATTCCTTGAATATTTTGATTTTGCAGGTGAATAATGATCCTCAGATTCTTATAAGGAAAGCACATGCTGCTACATTCTCTACAGGCTCAGCAACTGTGTAAGTTTATCCTCTTTTATTTAGGTTGCCAATTTTGAGTAAAAAGATCAAACATTGATATGCATTTTAATTTTTAAACTATTCTACCACAATATATATGCCTCAACAATTTCTTGTCTATGATTCTGTGAAGCATCATTGCTATGCTTGAAAAGAATGGGAATCTGAAGATTGCCAATGTTGGTGATTGTGGATTACGAGTTATTCGTAATGGTAATATCTCATGTTATAAAAGGAGTTATTTAATCTTCCCTATATATTTTTTTCCTCATCGGAAACACTTTGAATGTTGAGAACTTTAATTTCGCGGTGTTCCCTTTTCAGGTCAAGTAATCTTTTCCACTTCTCCACAAGAACATTACTTTGACTGCCCTTACCAACTGAGCTCTGAGAGGGTTGGCCAAACATACCTTGATGCAATGGTAACATTTAGCAATTGTAACTACTATTATATTAGTAACTTAATTTCTTTTTCCTACTCCTCTATCTGTCTTCACTTTACTCTTCAAAATAAGCAAGATTTCTAAACCAGCCTCATATATAAATGTGTATGTGAAATAGTCAATGAAGAGAAAATGGAAAATAAGCACAGACAGCAACCACCTAAACTTTCTTCCTCAGATTGAGACAGACAACTAAATAACTAATATTAATACTCCTAGAATAATCCGATGCTACACAACAATCTCTCTCCGTCTCATAATAAGTGTCACTTTTGCATTTTTTTTCTCTGTTTCAAAATAAGAGTGTTTTAGTGAATGATATTAATTTCACCATTAATATCACCACAACCAATCATTTCCTTAAGAACTGTGCACAACCCAAATGCTACACTAGCATGAGACGGAAGGAGTATTTGCATAATGTTTTTTGCTATGAAAATATAGACACAAGTACAAAAAACGACGTTGACACATAAACACCGGTGATAATTTCATAAAATAGAAGTGATTGAATGTAACCACCTGTGTCGTTTTCATGTCGGTGGCGGTCACCAGACATAGCTTCAATCTGAAGTTTCGATGCTGCATAGAATTTTTGGGCTCACGTGTCAGCCAAAATATTGGCTTTGGGTTAAGGGGTCCAGTTCCTTTGTTATTATTTTCCATAGTTATTGTTGTACATTAGTTCCCCCTAAACTCTTTATTGTATTTTTGTTAAAATAGCTTAGTTTCTTGGCTAGGGTGAAGGCCAAGTTATGTGTTATCATATTGAGTCACAACATAATACACAACACAACTTTCCAAAGGGGATATAGTCTCATTTCACACCTGATACAAATGTATTTCTGTTATATTTTCTTTTACTAACCTTGACAGGAAAACAGGTAAGTAATGTGGAGTTGATGGAAGGAGACACAATTGTGATGGGATCTGATGGGCTTTTTGATAATGTTTTTGACCATGAAATTGCTCTAACCGTTGCAAACAAAGATGTTTCTGAGGCTGGTATTGTCCTTCTTCTTTGTTGATCAGTATGAGGAATTGCGATCAATTGTAGGAATTTCACTGATTCACAATTCATTTTGTTGCTAGCAAAGGCATTAGCTAACTTGGCAAACAGTCATGCAATGGATTCGAATTTTGATTCTCCCTATTCATTGGAGGCAAGGGCCAAGGTAAAGAAATAACTAAATTTCATTTGCTTTACAAAAAAAGAGATTATTTAAAATGATGCATTATTTTGCGATTGTCAATTTGACTACTTCTGGAAAATGACTTCTTAATAGGGAAGTGACATTCTTAGTTTTAAAAGAGTTGCAGCCATTGAACAAGTTGACTAAAAAGATATTGTCTGCAAGAAACTCCAAAAAAGTTTAAACACATTCTAGAAAATTAGTTTGCGTAAAATAGATGGACAAATAAAAAAGCAAAACAATTTTATTAACTATCTTTTTTTTTTTGATGCATTGTCAACGATTTTCCAGGGTTTTGAAGCTCCATGGTGGAAGAAAGTTCTTGGAATGAAGTTGACAGGTGTGGCATAGCAAATTCTAAAATAACTTACATTTTCTATCTATATGTTGCTGACTTTACTTTTTCTATTGTAAACAGGAGGAAAGCTTGATGATATTACTGTAATTGTTGGTCAGGTTGTGAATTCATGA

Protein sequence

>MS.gene38551.t1

MAISILRAVMVSNSHCQSQPHIHNISSIDENAKRRKRVVFSTHSSELNPVIRSSEVSFSVGTCLIPHPKKVEKGGEDAFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMANAYNFVQDEEVNNDPQILIRKAHAATFSTGSATVIIAMLEKNGNLKIANVGDCGLRVIRNGQVIFSTSPQEHYFDCPYQLSSERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNVFDHEIALTVANKDVSEAAKALANLANSHAMDSNFDSPYSLEARAKGFEAPWWKKVLGMKLTGGKLDDITVIVGQVVNS