AlfalfaGEDB | MS.gene38558

M. sativa cultivar XinJiangDaYe / MS.gene38558

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38558.t1	PNY10062.1	72	161	6	1	4	125	517	677	3.80E-46	194.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38558.t1	Q8GS71	53.2	139	24	2	4	103	522	658	7.1e-25	114.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38558.t1	A0A2K3P444	72.0	161	6	1	4	125	517	677	2.8e-46	194.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene38558	0.802699	4.96E-49	-1.69E-46
MS.gene049159	MS.gene38558	0.807723	4.40E-50	-1.69E-46
MS.gene049887	MS.gene38558	0.803562	3.29E-49	-1.69E-46
MS.gene050807	MS.gene38558	0.832427	9.51E-56	-1.69E-46
MS.gene050815	MS.gene38558	0.803756	3.00E-49	-1.69E-46
MS.gene051102	MS.gene38558	0.812384	4.36E-51	-1.69E-46
MS.gene051180	MS.gene38558	0.802504	5.44E-49	-1.69E-46
MS.gene051328	MS.gene38558	0.803883	2.82E-49	-1.69E-46
MS.gene051719	MS.gene38558	0.812234	4.70E-51	-1.69E-46
MS.gene052020	MS.gene38558	0.800267	1.56E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38558.t1	MTR_3g102170	69.784	139	3	1	4	103	508	646	7.91e-52	175
MS.gene38558.t1	MTR_1g018940	61.151	139	15	1	4	103	508	646	5.15e-43	150
MS.gene38558.t1	MTR_4g094882	52.518	139	26	2	4	103	519	656	3.47e-32	119
MS.gene38558.t1	MTR_3g100270	35.252	139	51	1	4	103	553	691	3.58e-18	79.3
MS.gene38558.t1	MTR_5g066320	40.288	139	35	3	4	103	571	700	4.92e-18	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38558.t1	AT5G47820	53.237	139	24	2	4	103	522	658	1.52e-34	126
MS.gene38558.t1	AT5G47820	53.237	139	24	2	4	103	522	658	1.52e-34	126
MS.gene38558.t1	AT3G50240	48.921	139	31	2	4	103	526	663	9.05e-29	109
MS.gene38558.t1	AT3G50240	48.921	139	31	2	4	103	521	658	1.36e-28	109
MS.gene38558.t1	AT3G50240	48.921	139	31	2	4	103	424	561	1.36e-28	109
MS.gene38558.t1	AT3G50240	48.921	139	31	2	4	103	526	663	1.44e-28	109
MS.gene38558.t1	AT5G60930	36.691	139	49	1	4	103	569	707	1.03e-18	81.3
MS.gene38558.t1	AT5G60930	36.691	139	49	1	4	103	569	707	1.23e-18	80.9
MS.gene38558.t1	AT5G60930	36.691	139	49	1	4	103	569	707	1.31e-18	80.9

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Find 17 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAGGCAGAACAGTTT+CGG	0.393031	3.1:-81232244	MS.gene38558:CDS
AATCTTGCTGCCAACTCTGA+TGG	0.492420	3.1:-81232661	MS.gene38558:CDS
AGAACAGTTTCGGCAGTGGA+AGG	0.552559	3.1:-81232234	MS.gene38558:CDS
AGATGAGAAGAGAACAGTGC+AGG	0.532521	3.1:-81232797	MS.gene38558:intron
AGGCAGAACAGTTTCGGCAG+TGG	0.478814	3.1:-81232238	MS.gene38558:CDS
ATTAAATAACATGATAAAAG+AGG	0.491287	3.1:+81232172	None:intergenic
CAGTCTGAGATGAAGCTGTT+TGG	0.490976	3.1:-81232877	MS.gene38558:CDS
CTGTGTTTGTCCATCAGAGT+TGG	0.437241	3.1:+81232651	None:intergenic
CTGTTTGAGTACTTCAGCAT+CGG	0.557445	3.1:+81232849	None:intergenic
GAAGTACTCAAACAGCACTT+TGG	0.523229	3.1:-81232841	MS.gene38558:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAACCTGCAACATTATTA+AGG	+	chr3.1:81232739-81232758	None:intergenic	30.0%
CAGATCCAAAATCTAACATG+CGG	+	chr3.1:81232559-81232578	None:intergenic	35.0%
CATGACCTTAATAATGTTGC+AGG	-	chr3.1:81232731-81232750	MS.gene38558:intron	35.0%
GCAGCAAAAGATAAAACAAG+AGG	-	chr3.1:81232761-81232780	MS.gene38558:intron	35.0%
TGGACAAACACAGAAATTAG+AGG	-	chr3.1:81232378-81232397	MS.gene38558:intron	35.0%
AACAAGAGGCAGAACAGTTT+CGG	-	chr3.1:81232775-81232794	MS.gene38558:intron	40.0%
CGAAGAGGATACAGTCTATA+AGG	-	chr3.1:81232640-81232659	MS.gene38558:CDS	40.0%
CTGTTTGAGTACTTCAGCAT+CGG	+	chr3.1:81232173-81232192	None:intergenic	40.0%
TACAGTCTATAAGGCCCAAA+AGG	-	chr3.1:81232649-81232668	MS.gene38558:CDS	40.0%
TACTCAAACAGCACTTTGGA+AGG	-	chr3.1:81232182-81232201	MS.gene38558:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	81232133	81232908	81232133	ID=MS.gene38558
chr3.1	mRNA	81232133	81232908	81232133	ID=MS.gene38558.t1;Parent=MS.gene38558
chr3.1	exon	81232798	81232908	81232798	ID=MS.gene38558.t1.exon1;Parent=MS.gene38558.t1
chr3.1	CDS	81232798	81232908	81232798	ID=cds.MS.gene38558.t1;Parent=MS.gene38558.t1
chr3.1	exon	81232603	81232716	81232603	ID=MS.gene38558.t1.exon2;Parent=MS.gene38558.t1
chr3.1	CDS	81232603	81232716	81232603	ID=cds.MS.gene38558.t1;Parent=MS.gene38558.t1
chr3.1	exon	81232133	81232288	81232133	ID=MS.gene38558.t1.exon3;Parent=MS.gene38558.t1
chr3.1	CDS	81232133	81232288	81232133	ID=cds.MS.gene38558.t1;Parent=MS.gene38558.t1

Gene Sequence

>MS.gene38558

ATGTCTGTACAGTCTGAGATGAAGCTGTTTGGAGTATCCGATGCTGAAGTACTCAAACAGCACTTTGGAAGGAAGATAACGGAACTTGAAGATGAGAAGAGAACAGTGCAGGTTTGATAGAAGTTATGCAAATTTATTTTGACCTTTACATAAAAACTAGTATTCACTTACGTGCTTAATTTATGAATGCAGCGAGAAAGAGATTGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAACTCTGATGGACAAACACAGAAATTAGAGGATACCCATTCCCAAAAATTGAAAGCACTTGAAGCACAAGTGGGTAGTCCAACTTGCCTTATTTATTTATTTATGTATGTATAAAATAACATCTATTATCCGTTTATAAGATTTAAATTTGAATATATTCTAAATTGCAAAACCCTTGTCAAAACTCCGCATGTTAGATTTTGGATCTGAAGAAGAAGCAAGAGAGTCAGGTCCAGCTTATGAAGCAAAAGCAAAAAAGCGATGAAGCAACGAAGAGGATACAGTCTATAAGGCCCAAAAGGTTGACGATTGTATTTTAACAAATCCATGGTTATAACTTTATATACTCTTTGTTATGACTCATGACCTTAATAATGTTGCAGGTTCAATTGCAGCAAAAGATAAAACAAGAGGCAGAACAGTTTCGGCAGTGGAAGGCTTCTAGAGAGAAAGAACTGTTGCAAGTATGTCAAGCTTCCTCTTTTATCATGTTATTTAATCTGTTCATCCTACTTCTCGATGACATCTCAAGGTGCTGA

Protein sequence

>MS.gene38558.t1

MSVQSEMKLFGVSDAEVLKQHFGRKITELEDEKRTVQRERDCLLAEVENLAANSDGQTQKLEDTHSQKLKALEAQVQLQQKIKQEAEQFRQWKASREKELLQVCQASSFIMLFNLFILLLDDISRC