Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38580.t1 | XP_003602846.1 | 97 | 100 | 3 | 0 | 1 | 100 | 17 | 116 | 6.10E-50 | 206.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38580.t1 | Q41001 | 87.5 | 104 | 12 | 1 | 1 | 103 | 18 | 121 | 1.4e-47 | 189.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38580.t1 | B7FHG1 | 97.0 | 100 | 3 | 0 | 1 | 100 | 17 | 116 | 4.4e-50 | 206.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050649 | MS.gene38580 | 0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene054799 | MS.gene38580 | 0.953774 | 1.30E-111 | -1.69E-46 |
| MS.gene054805 | MS.gene38580 | 0.839069 | 1.98E-57 | -1.69E-46 |
| MS.gene060652 | MS.gene38580 | 0.802682 | 5.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47150 | MS.gene38580 | PPI |
| MS.gene38580 | MS.gene074086 | PPI |
| MS.gene38580 | MS.gene55509 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38580.t1 | MTR_3g099580 | 97.087 | 103 | 3 | 0 | 1 | 103 | 17 | 119 | 8.25e-71 | 209 |
| MS.gene38580.t1 | MTR_3g099570 | 86.408 | 103 | 14 | 0 | 1 | 103 | 17 | 119 | 2.49e-61 | 185 |
| MS.gene38580.t1 | MTR_3g099680 | 81.905 | 105 | 17 | 2 | 1 | 103 | 17 | 121 | 2.13e-54 | 169 |
| MS.gene38580.t1 | MTR_3g099980 | 81.905 | 105 | 17 | 2 | 1 | 103 | 17 | 121 | 1.60e-53 | 166 |
| MS.gene38580.t1 | MTR_3g099540 | 69.903 | 103 | 31 | 0 | 1 | 103 | 18 | 120 | 3.91e-47 | 147 |
| MS.gene38580.t1 | MTR_8g007035 | 58.491 | 106 | 41 | 2 | 1 | 103 | 14 | 119 | 1.21e-36 | 123 |
| MS.gene38580.t1 | MTR_8g007020 | 57.547 | 106 | 42 | 2 | 1 | 103 | 14 | 119 | 1.56e-35 | 120 |
| MS.gene38580.t1 | MTR_1g090190 | 44.792 | 96 | 53 | 0 | 7 | 102 | 20 | 115 | 7.06e-28 | 100 |
| MS.gene38580.t1 | MTR_6g080660 | 47.872 | 94 | 49 | 0 | 10 | 103 | 28 | 121 | 7.36e-26 | 95.9 |
| MS.gene38580.t1 | MTR_4g114870 | 49.495 | 99 | 45 | 2 | 10 | 103 | 191 | 289 | 8.60e-26 | 98.6 |
| MS.gene38580.t1 | MTR_4g114870 | 47.525 | 101 | 48 | 2 | 8 | 103 | 27 | 127 | 1.49e-25 | 98.2 |
| MS.gene38580.t1 | MTR_2g088990 | 44.898 | 98 | 53 | 1 | 6 | 102 | 21 | 118 | 1.11e-25 | 95.9 |
| MS.gene38580.t1 | MTR_6g023760 | 44.898 | 98 | 53 | 1 | 6 | 102 | 22 | 119 | 3.84e-24 | 90.5 |
| MS.gene38580.t1 | MTR_5g006040 | 44.444 | 99 | 52 | 3 | 7 | 102 | 23 | 121 | 4.89e-24 | 90.5 |
| MS.gene38580.t1 | MTR_0334s0010 | 42.157 | 102 | 56 | 1 | 5 | 103 | 23 | 124 | 2.68e-23 | 89.0 |
| MS.gene38580.t1 | MTR_1g104800 | 42.424 | 99 | 54 | 3 | 7 | 102 | 22 | 120 | 1.08e-22 | 87.0 |
| MS.gene38580.t1 | MTR_1g112700 | 38.614 | 101 | 60 | 2 | 5 | 103 | 28 | 128 | 4.78e-22 | 85.5 |
| MS.gene38580.t1 | MTR_7g086140 | 43.434 | 99 | 54 | 2 | 6 | 102 | 22 | 120 | 2.14e-21 | 83.2 |
| MS.gene38580.t1 | MTR_7g086190 | 43.434 | 99 | 54 | 2 | 6 | 102 | 22 | 120 | 2.14e-21 | 83.2 |
| MS.gene38580.t1 | MTR_8g099220 | 41.584 | 101 | 55 | 2 | 7 | 103 | 26 | 126 | 2.48e-20 | 79.3 |
| MS.gene38580.t1 | MTR_4g067200 | 38.182 | 110 | 61 | 3 | 1 | 103 | 19 | 128 | 8.22e-20 | 79.3 |
| MS.gene38580.t1 | MTR_4g066110 | 38.182 | 110 | 61 | 3 | 1 | 103 | 19 | 128 | 8.22e-20 | 79.3 |
| MS.gene38580.t1 | MTR_7g086160 | 41.837 | 98 | 55 | 2 | 7 | 102 | 24 | 121 | 1.07e-19 | 79.0 |
| MS.gene38580.t1 | MTR_6g083240 | 41.905 | 105 | 54 | 3 | 5 | 102 | 22 | 126 | 1.35e-19 | 79.0 |
| MS.gene38580.t1 | MTR_2g043730 | 43.000 | 100 | 53 | 3 | 5 | 103 | 27 | 123 | 2.43e-19 | 77.0 |
| MS.gene38580.t1 | MTR_1g105130 | 39.394 | 99 | 58 | 2 | 6 | 102 | 21 | 119 | 2.53e-19 | 77.8 |
| MS.gene38580.t1 | MTR_1g105120 | 39.394 | 99 | 58 | 2 | 6 | 102 | 21 | 119 | 2.53e-19 | 77.8 |
| MS.gene38580.t1 | MTR_4g081100 | 42.708 | 96 | 50 | 2 | 12 | 102 | 34 | 129 | 1.40e-18 | 77.4 |
| MS.gene38580.t1 | MTR_2g025580 | 39.583 | 96 | 56 | 2 | 10 | 103 | 27 | 122 | 3.97e-18 | 75.1 |
| MS.gene38580.t1 | MTR_3g089035 | 43.299 | 97 | 51 | 3 | 7 | 102 | 30 | 123 | 5.90e-18 | 73.2 |
| MS.gene38580.t1 | MTR_7g086220 | 37.374 | 99 | 60 | 2 | 6 | 102 | 21 | 119 | 7.17e-18 | 73.9 |
| MS.gene38580.t1 | MTR_7g086100 | 39.785 | 93 | 55 | 1 | 11 | 102 | 27 | 119 | 1.44e-17 | 74.7 |
| MS.gene38580.t1 | MTR_7g086090 | 40.860 | 93 | 54 | 1 | 11 | 102 | 27 | 119 | 1.90e-17 | 74.7 |
| MS.gene38580.t1 | MTR_2g083250 | 41.837 | 98 | 50 | 2 | 12 | 102 | 28 | 125 | 2.55e-17 | 74.7 |
| MS.gene38580.t1 | MTR_7g086280 | 37.755 | 98 | 60 | 1 | 6 | 102 | 22 | 119 | 5.45e-17 | 72.0 |
| MS.gene38580.t1 | MTR_7g086230 | 37.755 | 98 | 60 | 1 | 6 | 102 | 22 | 119 | 5.81e-17 | 72.0 |
| MS.gene38580.t1 | MTR_4g007250 | 39.000 | 100 | 59 | 2 | 4 | 102 | 23 | 121 | 1.53e-16 | 70.9 |
| MS.gene38580.t1 | MTR_1g090420 | 34.653 | 101 | 62 | 2 | 7 | 103 | 25 | 125 | 4.21e-16 | 70.9 |
| MS.gene38580.t1 | MTR_6g022170 | 36.275 | 102 | 59 | 2 | 7 | 103 | 31 | 131 | 2.55e-15 | 67.4 |
| MS.gene38580.t1 | MTR_8g463180 | 38.298 | 94 | 55 | 2 | 12 | 102 | 26 | 119 | 2.73e-15 | 69.7 |
| MS.gene38580.t1 | MTR_4g111640 | 33.333 | 102 | 61 | 2 | 8 | 103 | 30 | 130 | 8.96e-15 | 66.6 |
| MS.gene38580.t1 | MTR_2g101300 | 36.275 | 102 | 59 | 2 | 7 | 103 | 24 | 124 | 3.31e-14 | 65.1 |
| MS.gene38580.t1 | MTR_6g013420 | 38.462 | 104 | 59 | 4 | 3 | 102 | 30 | 132 | 5.31e-14 | 64.3 |
| MS.gene38580.t1 | MTR_4g077787 | 32.353 | 102 | 62 | 2 | 8 | 103 | 30 | 130 | 7.13e-14 | 64.3 |
| MS.gene38580.t1 | MTR_8g088830 | 39.000 | 100 | 52 | 5 | 7 | 102 | 25 | 119 | 1.29e-13 | 62.0 |
| MS.gene38580.t1 | MTR_6g013200 | 37.234 | 94 | 55 | 3 | 12 | 102 | 37 | 129 | 2.78e-13 | 62.4 |
| MS.gene38580.t1 | MTR_4g112310 | 35.000 | 80 | 51 | 1 | 24 | 103 | 2 | 80 | 4.70e-13 | 60.8 |
| MS.gene38580.t1 | MTR_2g090575 | 40.217 | 92 | 52 | 2 | 12 | 100 | 27 | 118 | 6.06e-13 | 63.2 |
| MS.gene38580.t1 | MTR_1g014120 | 35.789 | 95 | 56 | 2 | 13 | 102 | 29 | 123 | 9.89e-13 | 61.2 |
| MS.gene38580.t1 | MTR_3g105930 | 34.737 | 95 | 57 | 2 | 13 | 102 | 31 | 125 | 1.88e-12 | 60.5 |
| MS.gene38580.t1 | MTR_2g090580 | 37.234 | 94 | 56 | 2 | 12 | 102 | 29 | 122 | 2.04e-12 | 60.5 |
| MS.gene38580.t1 | MTR_4g124280 | 33.663 | 101 | 62 | 2 | 7 | 102 | 22 | 122 | 3.29e-12 | 60.5 |
| MS.gene38580.t1 | MTR_4g130800 | 40.260 | 77 | 45 | 1 | 27 | 102 | 50 | 126 | 3.45e-12 | 60.8 |
| MS.gene38580.t1 | MTR_4g130800 | 40.260 | 77 | 45 | 1 | 27 | 102 | 51 | 127 | 3.84e-12 | 60.8 |
| MS.gene38580.t1 | MTR_4g130780 | 37.500 | 80 | 49 | 1 | 24 | 102 | 48 | 127 | 9.21e-12 | 58.5 |
| MS.gene38580.t1 | MTR_8g086360 | 38.542 | 96 | 52 | 3 | 12 | 102 | 26 | 119 | 5.68e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38580.t1 | AT1G72230 | 72.941 | 85 | 23 | 0 | 18 | 102 | 31 | 115 | 3.79e-43 | 139 |
| MS.gene38580.t1 | AT1G22480 | 65.882 | 85 | 29 | 0 | 18 | 102 | 27 | 111 | 4.36e-35 | 118 |
| MS.gene38580.t1 | AT2G32300 | 48.000 | 100 | 51 | 1 | 5 | 103 | 21 | 120 | 3.13e-29 | 105 |
| MS.gene38580.t1 | AT2G32300 | 48.000 | 100 | 51 | 1 | 5 | 103 | 51 | 150 | 8.88e-29 | 105 |
| MS.gene38580.t1 | AT3G60270 | 46.465 | 99 | 53 | 0 | 5 | 103 | 21 | 119 | 1.10e-27 | 100 |
| MS.gene38580.t1 | AT3G27200 | 44.898 | 98 | 53 | 1 | 6 | 102 | 22 | 119 | 3.96e-26 | 95.5 |
| MS.gene38580.t1 | AT5G07475 | 44.330 | 97 | 54 | 0 | 7 | 103 | 27 | 123 | 4.22e-25 | 93.6 |
| MS.gene38580.t1 | AT2G26720 | 45.361 | 97 | 51 | 2 | 8 | 102 | 27 | 123 | 1.74e-24 | 92.4 |
| MS.gene38580.t1 | AT2G31050 | 47.423 | 97 | 49 | 2 | 8 | 102 | 27 | 123 | 3.84e-24 | 91.3 |
| MS.gene38580.t1 | AT2G44790 | 51.136 | 88 | 41 | 1 | 18 | 103 | 36 | 123 | 1.62e-23 | 89.7 |
| MS.gene38580.t1 | AT5G26330 | 44.444 | 99 | 52 | 2 | 7 | 102 | 21 | 119 | 3.60e-23 | 88.6 |
| MS.gene38580.t1 | AT3G17675 | 37.500 | 104 | 64 | 1 | 1 | 103 | 23 | 126 | 1.19e-20 | 80.5 |
| MS.gene38580.t1 | AT3G60280 | 42.268 | 97 | 56 | 0 | 6 | 102 | 20 | 116 | 2.60e-20 | 81.6 |
| MS.gene38580.t1 | AT5G20230 | 41.237 | 97 | 53 | 2 | 10 | 102 | 25 | 121 | 4.80e-16 | 70.1 |
| MS.gene38580.t1 | AT2G25060 | 40.816 | 98 | 52 | 3 | 11 | 102 | 32 | 129 | 7.14e-16 | 69.3 |
| MS.gene38580.t1 | AT1G64640 | 38.000 | 100 | 58 | 2 | 7 | 102 | 30 | 129 | 1.54e-15 | 68.6 |
| MS.gene38580.t1 | AT3G18590 | 36.893 | 103 | 58 | 2 | 7 | 103 | 24 | 125 | 4.13e-15 | 67.4 |
| MS.gene38580.t1 | AT5G57920 | 39.241 | 79 | 47 | 1 | 25 | 102 | 43 | 121 | 1.19e-14 | 66.2 |
| MS.gene38580.t1 | AT5G57920 | 39.241 | 79 | 47 | 1 | 25 | 102 | 42 | 120 | 1.97e-14 | 65.5 |
| MS.gene38580.t1 | AT5G57920 | 39.241 | 79 | 47 | 1 | 25 | 102 | 75 | 153 | 2.52e-14 | 65.9 |
| MS.gene38580.t1 | AT4G31840 | 38.776 | 98 | 54 | 3 | 11 | 102 | 28 | 125 | 2.67e-14 | 65.1 |
| MS.gene38580.t1 | AT1G45063 | 39.000 | 100 | 53 | 4 | 9 | 102 | 148 | 245 | 2.92e-14 | 66.6 |
| MS.gene38580.t1 | AT1G45063 | 33.663 | 101 | 60 | 3 | 7 | 102 | 26 | 124 | 9.32e-11 | 57.0 |
| MS.gene38580.t1 | AT1G45063 | 39.000 | 100 | 53 | 4 | 9 | 102 | 148 | 245 | 4.06e-14 | 66.6 |
| MS.gene38580.t1 | AT4G12880 | 36.364 | 99 | 59 | 3 | 7 | 102 | 26 | 123 | 1.32e-13 | 62.8 |
| MS.gene38580.t1 | AT5G53870 | 36.170 | 94 | 57 | 2 | 12 | 102 | 32 | 125 | 2.37e-13 | 64.7 |
| MS.gene38580.t1 | AT4G30590 | 36.709 | 79 | 49 | 1 | 25 | 102 | 48 | 126 | 2.47e-13 | 62.8 |
| MS.gene38580.t1 | AT2G02850 | 39.000 | 100 | 51 | 4 | 7 | 102 | 33 | 126 | 3.45e-13 | 61.2 |
| MS.gene38580.t1 | AT4G28365 | 35.789 | 95 | 58 | 2 | 12 | 103 | 31 | 125 | 4.72e-13 | 62.4 |
| MS.gene38580.t1 | AT5G15350 | 36.364 | 99 | 61 | 2 | 7 | 103 | 26 | 124 | 5.35e-13 | 61.6 |
| MS.gene38580.t1 | AT1G48940 | 37.113 | 97 | 54 | 3 | 13 | 103 | 29 | 124 | 1.05e-12 | 60.8 |
| MS.gene38580.t1 | AT4G32490 | 32.979 | 94 | 60 | 2 | 12 | 102 | 33 | 126 | 5.67e-12 | 59.7 |
| MS.gene38580.t1 | AT1G79800 | 35.052 | 97 | 57 | 2 | 12 | 103 | 36 | 131 | 1.18e-11 | 58.5 |
| MS.gene38580.t1 | AT3G53330 | 33.654 | 104 | 64 | 4 | 3 | 102 | 182 | 284 | 1.27e-11 | 59.7 |
| MS.gene38580.t1 | AT5G53870 | 36.170 | 94 | 57 | 2 | 12 | 102 | 32 | 125 | 1.35e-11 | 59.7 |
| MS.gene38580.t1 | AT4G01380 | 32.979 | 94 | 53 | 4 | 17 | 102 | 79 | 170 | 4.09e-11 | 57.4 |
Find 29 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCATATGTGCTGTTCC+TGG | 0.349993 | 3.3:-82039205 | MS.gene38580:CDS |
| GATAAATCAGGTTGGGCAAT+TGG | 0.365257 | 3.3:-82039588 | MS.gene38580:CDS |
| GACTATAAATCATGCACAAC+TGG | 0.368543 | 3.3:-82039292 | MS.gene38580:CDS |
| ACTATGACAGTGTTCAACTA+TGG | 0.385966 | 3.3:-82039349 | MS.gene38580:intron |
| TGGCATGAAACTTTCTGTTA+AGG | 0.430118 | 3.3:-82039170 | None:intergenic |
| TCCTGCTTTCTTGAGAGGGA+TGG | 0.445617 | 3.3:+82039234 | None:intergenic |
| ATGCCACCTGTGCAATGTCC+AGG | 0.481287 | 3.3:+82039187 | None:intergenic |
| GTGTTCCTGCTTTCTTGAGA+GGG | 0.482705 | 3.3:+82039230 | None:intergenic |
| TGTGTTCCTGCTTTCTTGAG+AGG | 0.493116 | 3.3:+82039229 | None:intergenic |
| TTTCTTGAGAGGGATGGTTG+TGG | 0.493786 | 3.3:+82039240 | None:intergenic |
| CACACCGTTGGAGATAAATC+AGG | 0.494660 | 3.3:-82039600 | MS.gene38580:CDS |
| GGCTAGTGACAAAACATTTG+CGG | 0.495560 | 3.3:-82039547 | MS.gene38580:CDS |
| TTTGCGGTTGGTGACAGTCT+TGG | 0.500707 | 3.3:-82039531 | MS.gene38580:intron |
| CGTTGGAGATAAATCAGGTT+GGG | 0.514147 | 3.3:-82039595 | MS.gene38580:CDS |
| CTTGCAACTGTCCACACCGT+TGG | 0.529565 | 3.3:-82039612 | MS.gene38580:CDS |
| ACCATCCCTCTCAAGAAAGC+AGG | 0.564418 | 3.3:-82039235 | MS.gene38580:CDS |
| GTTCCTGGACATTGCACAGG+TGG | 0.574513 | 3.3:-82039190 | MS.gene38580:CDS |
| CCAACCTGATTTATCTCCAA+CGG | 0.588831 | 3.3:+82039596 | None:intergenic |
| GTGTGGACAGTTGCAAGAGT+TGG | 0.591396 | 3.3:+82039618 | None:intergenic |
| AGTGACAAAACATTTGCGGT+TGG | 0.594495 | 3.3:-82039543 | MS.gene38580:CDS |
| GCTGTTCCTGGACATTGCAC+AGG | 0.594776 | 3.3:-82039193 | MS.gene38580:CDS |
| CTTTAACTTCATCCACTGTG+TGG | 0.606822 | 3.3:+82039320 | None:intergenic |
| ACAGTGTTCAACTATGGTGC+TGG | 0.611527 | 3.3:-82039343 | MS.gene38580:intron |
| TTGGTTCTGATTATAACACA+TGG | 0.617869 | 3.3:-82039569 | MS.gene38580:CDS |
| CCGTTGGAGATAAATCAGGT+TGG | 0.633245 | 3.3:-82039596 | MS.gene38580:CDS |
| TGGTTCTGATTATAACACAT+GGG | 0.658992 | 3.3:-82039568 | MS.gene38580:CDS |
| CTGATTTATCTCCAACGGTG+TGG | 0.663800 | 3.3:+82039601 | None:intergenic |
| TCAATTAGTACAGACAGTAG+TGG | 0.678569 | 3.3:-82039265 | MS.gene38580:CDS |
| CTATGGTGCTGGCCACACAG+TGG | 0.772990 | 3.3:-82039332 | MS.gene38580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAGATTTGTAAATTG+TGG | + | chr3.3:82039420-82039439 | None:intergenic | 15.0% |
| !! | TGGTTCTGATTATAACACAT+GGG | - | chr3.3:82039230-82039249 | MS.gene38580:CDS | 30.0% |
| !! | TTGGTTCTGATTATAACACA+TGG | - | chr3.3:82039229-82039248 | MS.gene38580:CDS | 30.0% |
| ACTATGACAGTGTTCAACTA+TGG | - | chr3.3:82039449-82039468 | MS.gene38580:intron | 35.0% | |
| GACTATAAATCATGCACAAC+TGG | - | chr3.3:82039506-82039525 | MS.gene38580:intron | 35.0% | |
| TCAATTAGTACAGACAGTAG+TGG | - | chr3.3:82039533-82039552 | MS.gene38580:CDS | 35.0% | |
| AGTGACAAAACATTTGCGGT+TGG | - | chr3.3:82039255-82039274 | MS.gene38580:CDS | 40.0% | |
| CCAACCTGATTTATCTCCAA+CGG | + | chr3.3:82039205-82039224 | None:intergenic | 40.0% | |
| CGTTGGAGATAAATCAGGTT+GGG | - | chr3.3:82039203-82039222 | MS.gene38580:CDS | 40.0% | |
| GGCTAGTGACAAAACATTTG+CGG | - | chr3.3:82039251-82039270 | MS.gene38580:CDS | 40.0% | |
| ! | CTTTAACTTCATCCACTGTG+TGG | + | chr3.3:82039481-82039500 | None:intergenic | 40.0% |
| ! | TACTTCATATGTGCTGTTCC+TGG | - | chr3.3:82039593-82039612 | MS.gene38580:CDS | 40.0% |
| !! | GATAAATCAGGTTGGGCAAT+TGG | - | chr3.3:82039210-82039229 | MS.gene38580:CDS | 40.0% |
| ACAGTGTTCAACTATGGTGC+TGG | - | chr3.3:82039455-82039474 | MS.gene38580:intron | 45.0% | |
| CACACCGTTGGAGATAAATC+AGG | - | chr3.3:82039198-82039217 | MS.gene38580:CDS | 45.0% | |
| CCGTTGGAGATAAATCAGGT+TGG | - | chr3.3:82039202-82039221 | MS.gene38580:CDS | 45.0% | |
| CTGATTTATCTCCAACGGTG+TGG | + | chr3.3:82039200-82039219 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTTCTTGAGA+GGG | + | chr3.3:82039571-82039590 | None:intergenic | 45.0% | |
| TGTGTTCCTGCTTTCTTGAG+AGG | + | chr3.3:82039572-82039591 | None:intergenic | 45.0% | |
| TTTCTTGAGAGGGATGGTTG+TGG | + | chr3.3:82039561-82039580 | None:intergenic | 45.0% | |
| ACCATCCCTCTCAAGAAAGC+AGG | - | chr3.3:82039563-82039582 | MS.gene38580:CDS | 50.0% | |
| GTGTGGACAGTTGCAAGAGT+TGG | + | chr3.3:82039183-82039202 | None:intergenic | 50.0% | |
| TCCTGCTTTCTTGAGAGGGA+TGG | + | chr3.3:82039567-82039586 | None:intergenic | 50.0% | |
| !! | TTTGCGGTTGGTGACAGTCT+TGG | - | chr3.3:82039267-82039286 | MS.gene38580:CDS | 50.0% |
| ATGCCACCTGTGCAATGTCC+AGG | + | chr3.3:82039614-82039633 | None:intergenic | 55.0% | |
| CTTGCAACTGTCCACACCGT+TGG | - | chr3.3:82039186-82039205 | MS.gene38580:CDS | 55.0% | |
| GCTGTTCCTGGACATTGCAC+AGG | - | chr3.3:82039605-82039624 | MS.gene38580:CDS | 55.0% | |
| GTTCCTGGACATTGCACAGG+TGG | - | chr3.3:82039608-82039627 | MS.gene38580:CDS | 55.0% | |
| !! | CTATGGTGCTGGCCACACAG+TGG | - | chr3.3:82039466-82039485 | MS.gene38580:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 82039171 | 82039649 | 82039171 | ID=MS.gene38580 |
| chr3.3 | mRNA | 82039171 | 82039649 | 82039171 | ID=MS.gene38580.t1;Parent=MS.gene38580 |
| chr3.3 | exon | 82039532 | 82039649 | 82039532 | ID=MS.gene38580.t1.exon1;Parent=MS.gene38580.t1 |
| chr3.3 | CDS | 82039532 | 82039649 | 82039532 | ID=cds.MS.gene38580.t1;Parent=MS.gene38580.t1 |
| chr3.3 | exon | 82039171 | 82039361 | 82039171 | ID=MS.gene38580.t1.exon2;Parent=MS.gene38580.t1 |
| chr3.3 | CDS | 82039171 | 82039361 | 82039171 | ID=cds.MS.gene38580.t1;Parent=MS.gene38580.t1 |
| Gene Sequence |
| Protein sequence |
