AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38610.t1 MTR_3g101130 70.321 374 111 0 1 374 16 389 0.0 535
MS.gene38610.t1 MTR_7g047780 65.172 379 127 2 1 374 24 402 2.52e-173 488
MS.gene38610.t1 MTR_7g451890 64.908 379 128 2 1 374 24 402 5.85e-173 488
MS.gene38610.t1 MTR_3g101180 63.969 383 127 3 1 372 16 398 9.01e-173 487
MS.gene38610.t1 MTR_7g050750 64.908 379 128 2 1 374 18 396 4.57e-171 483
MS.gene38610.t1 MTR_8g461160 64.456 377 129 2 1 372 16 392 5.17e-169 477
MS.gene38610.t1 MTR_7g050810 63.325 379 134 2 1 374 26 404 9.62e-167 472
MS.gene38610.t1 MTR_3g101010 63.947 380 126 4 1 374 15 389 1.31e-165 468
MS.gene38610.t1 MTR_8g027395 62.698 378 130 3 1 374 27 397 2.52e-164 466
MS.gene38610.t1 MTR_3g018740 63.228 378 127 4 1 372 15 386 8.50e-164 464
MS.gene38610.t1 MTR_4g045707 62.005 379 133 4 1 374 16 388 1.58e-161 458
MS.gene38610.t1 MTR_3g101030 58.163 392 145 3 1 374 39 429 5.57e-159 453
MS.gene38610.t1 MTR_8g027420 61.640 378 123 5 1 374 16 375 1.16e-155 442
MS.gene38610.t1 MTR_3g101200 62.670 367 115 3 7 372 45 390 4.26e-150 429
MS.gene38610.t1 MTR_4g088525 59.511 368 130 3 15 373 11 368 3.02e-148 424
MS.gene38610.t1 MTR_3g101050 60.317 378 126 5 1 373 39 397 7.21e-145 416
MS.gene38610.t1 MTR_2g046030 56.579 380 149 5 1 372 15 386 8.37e-141 405
MS.gene38610.t1 MTR_2g045980 56.579 380 149 5 1 372 15 386 1.28e-140 405
MS.gene38610.t1 MTR_3g048000 56.349 378 137 6 1 373 37 391 1.99e-139 402
MS.gene38610.t1 MTR_3g015620 56.649 376 136 5 1 372 26 378 8.82e-138 397
MS.gene38610.t1 MTR_4g088535 56.720 372 134 5 1 368 17 365 1.10e-136 395
MS.gene38610.t1 MTR_3g102920 53.684 380 129 7 1 372 68 408 1.89e-126 370
MS.gene38610.t1 MTR_3g101190 53.333 360 108 3 15 374 13 312 5.15e-121 352
MS.gene38610.t1 MTR_3g100995 65.873 252 82 2 125 374 15 264 4.01e-116 338
MS.gene38610.t1 MTR_7g050830 56.908 304 100 2 1 284 26 318 7.11e-114 335
MS.gene38610.t1 MTR_3g100010 52.885 312 99 4 16 294 40 336 3.19e-104 311
MS.gene38610.t1 MTR_3g015760 60.432 278 105 5 98 372 4 279 7.04e-103 305
MS.gene38610.t1 MTR_3g018747 58.621 261 87 3 117 372 9 253 7.38e-99 294
MS.gene38610.t1 MTR_3g111160 61.395 215 75 2 165 374 9 220 3.21e-81 248
MS.gene38610.t1 MTR_3g100520 57.848 223 74 4 158 374 1 209 4.87e-81 247
MS.gene38610.t1 MTR_3g099970 64.130 184 50 1 117 300 20 187 1.60e-77 237
MS.gene38610.t1 MTR_3g114310 39.793 387 208 11 7 374 30 410 3.35e-75 239
MS.gene38610.t1 MTR_3g101110 54.661 236 74 3 120 348 71 280 6.28e-74 231
MS.gene38610.t1 MTR_2g046410 57.005 207 78 3 174 372 144 347 1.90e-70 224
MS.gene38610.t1 MTR_3g101020 58.152 184 53 2 191 374 1 160 2.25e-63 200
MS.gene38610.t1 MTR_3g101150 65.823 158 47 2 223 373 1 158 7.30e-62 196
MS.gene38610.t1 MTR_3g102870 54.938 162 64 2 182 334 3 164 2.80e-51 169
MS.gene38610.t1 MTR_3g111150 51.462 171 57 3 1 171 9 153 3.77e-50 166
MS.gene38610.t1 MTR_3g100990 62.712 118 42 1 1 118 15 130 6.43e-39 145
MS.gene38610.t1 MTR_3g101140 53.782 119 44 2 256 374 9 116 2.55e-29 110
MS.gene38610.t1 MTR_4g093550 60.526 76 28 1 1 76 16 89 1.09e-22 91.7
MS.gene38610.t1 MTR_6g046890 62.295 61 23 0 14 74 20 80 5.10e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38610.t1 AT1G47710 48.684 380 183 5 1 372 15 390 1.82e-125 367
MS.gene38610.t1 AT1G47710 48.684 380 183 5 1 372 42 417 6.60e-125 366
MS.gene38610.t1 AT3G45220 46.739 368 176 4 17 371 30 390 3.12e-113 335
MS.gene38610.t1 AT2G25240 48.485 363 169 7 17 371 30 382 2.70e-109 325
MS.gene38610.t1 AT2G26390 47.268 366 172 6 17 371 31 386 5.64e-109 325
MS.gene38610.t1 AT1G62170 43.207 368 179 5 14 373 88 433 1.14e-99 302
MS.gene38610.t1 AT1G64030 43.733 375 189 5 1 371 15 371 2.71e-98 297
MS.gene38610.t1 AT2G14540 45.429 361 176 4 14 371 55 397 2.38e-97 295
MS.gene38610.t1 AT2G35580 43.697 357 177 7 21 371 33 371 1.11e-94 288
MS.gene38610.t1 AT1G62170 39.900 401 178 7 14 373 88 466 2.72e-93 287
MS.gene38610.t1 AT1G64010 50.000 216 85 5 158 371 1 195 6.47e-65 205
MS.gene38610.t1 AT1G64010 49.254 201 79 5 173 371 2 181 6.66e-57 184
MS.gene38610.t1 AT1G63280 54.237 118 50 2 114 229 5 120 7.30e-35 124
MS.gene38610.t1 AT1G62160 40.796 201 90 5 180 373 42 220 3.20e-34 126
MS.gene38610.t1 AT1G51330 50.000 112 53 2 115 223 29 140 7.80e-28 108
MS.gene38610.t1 AT1G64020 38.000 100 59 3 1 99 15 112 5.17e-12 62.8
MS.gene38610.t1 AT2G35555 37.374 99 43 3 237 333 1 82 8.46e-11 59.3

Find 80 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCAAACAGTGAATTTA+TGG 0.177292 3.2:+84235569 MS.gene38610:CDS
TATGAGGAAGCTTGTCTTCT+AGG 0.205127 3.2:-84235948 None:intergenic
TGTCTTCCGCCAACGCTGTT+TGG 0.235578 3.2:+84235160 MS.gene38610:CDS
CTTGTCTTTATATTCTTCTT+TGG 0.244807 3.2:-84234950 None:intergenic
GTCTTCCGCCAACGCTGTTT+GGG 0.277866 3.2:+84235161 MS.gene38610:CDS
CTGCCGCATTCACGGGAATT+AGG 0.286210 3.2:+84236169 MS.gene38610:CDS
CCTCTTCATGCTAGTCATAA+AGG 0.293948 3.2:-84235773 None:intergenic
AACGATTGCTACTGATTATA+TGG 0.304098 3.2:+84235221 MS.gene38610:CDS
GATGCAAAAGATGGGTTGTT+AGG 0.331478 3.2:+84235892 MS.gene38610:CDS
TCATCTTCACCTTGCTTGTA+AGG 0.348281 3.2:-84235838 None:intergenic
TTGATAAGAGAAGATTTATC+TGG 0.365061 3.2:+84236264 MS.gene38610:CDS
CAGCCCATAAATTCACTGTT+TGG 0.367847 3.2:-84235573 None:intergenic
CGCTAAAGCTGCCGCATTCA+CGG 0.369766 3.2:+84236161 MS.gene38610:CDS
AATCAGCTTCTGTCCTTTCT+CGG 0.370054 3.2:+84235048 MS.gene38610:CDS
CGAGGAGACTGAGCGCAGTT+TGG 0.373483 3.2:-84234999 None:intergenic
TCTGATGTGTTGAAGGAGTT+AGG 0.381460 3.2:+84236033 MS.gene38610:CDS
AGTAGCAATCGTTTCTTTGA+AGG 0.393849 3.2:-84235211 None:intergenic
AGTACTGTAGAAACACTAAT+TGG 0.400387 3.2:-84236105 None:intergenic
TCTGGTACAATACTCTTTGT+TGG 0.400415 3.2:+84236282 MS.gene38610:CDS
TAGAGAGTTAAGATGGTTGA+TGG 0.401089 3.2:-84235079 None:intergenic
TGAAGGAAGGGTATAGAGAA+AGG 0.403170 3.2:-84235194 None:intergenic
GGAGCAATCGTTTGATGCTT+CGG 0.404813 3.2:+84235699 MS.gene38610:CDS
CTGGTACAATACTCTTTGTT+GGG 0.404814 3.2:+84236283 MS.gene38610:CDS
AATCCAAACAGTGAATTTAT+GGG 0.413001 3.2:+84235570 MS.gene38610:CDS
TGAAATTTCTGATGTGTTGA+AGG 0.418942 3.2:+84236026 MS.gene38610:CDS
GAGAAGATAGAGAGTTAAGA+TGG 0.420639 3.2:-84235086 None:intergenic
ATTCTTCTTTGGAGAACAAA+TGG 0.423124 3.2:-84234939 None:intergenic
CAAGTGCATAATCCTCTTGC+TGG 0.429353 3.2:+84236306 MS.gene38610:CDS
CTCTTCATGCTAGTCATAAA+GGG 0.432869 3.2:-84235772 None:intergenic
AGTGAATTTATGGGCTGAAA+AGG 0.438746 3.2:+84235579 MS.gene38610:CDS
TTCACGGGAATTAGGATGTA+TGG 0.438848 3.2:+84236177 MS.gene38610:CDS
TTTCTTCCAGATGCAAAAGA+TGG 0.444703 3.2:+84235883 MS.gene38610:CDS
CTCAAAGATGCTGCTCCCGC+GGG 0.457140 3.2:+84235126 MS.gene38610:CDS
CTCCTCGCTGTTGGTTCTGA+GGG 0.470422 3.2:+84235015 MS.gene38610:CDS
TCAAAAGAAATATTGAATCT+TGG 0.470594 3.2:-84236000 None:intergenic
GCTAAAGCTGCCGCATTCAC+GGG 0.470834 3.2:+84236162 MS.gene38610:CDS
GAAGGAAGGGTATAGAGAAA+GGG 0.471859 3.2:-84235193 None:intergenic
GTCAAACCTCCAAAAGAGAA+AGG 0.475976 3.2:-84236066 None:intergenic
TCTCCTCGCTGTTGGTTCTG+AGG 0.490976 3.2:+84235014 MS.gene38610:CDS
TTCTTTGGAGAACAAATGGT+TGG 0.505452 3.2:-84234935 None:intergenic
GCGCTCAGTCTCCTCGCTGT+TGG 0.506186 3.2:+84235006 MS.gene38610:CDS
GCTCAAAGATGCTGCTCCCG+CGG 0.508370 3.2:+84235125 MS.gene38610:CDS
TTCAACCCAAACAGCGTTGG+CGG 0.511056 3.2:-84235166 None:intergenic
CAATCGTTTCTTTGAAGGAA+GGG 0.513423 3.2:-84235206 None:intergenic
GATGGACTTTGATCCGAGAA+AGG 0.517573 3.2:-84235061 None:intergenic
ACAAATGCATTATACTTCAA+AGG 0.517977 3.2:+84235670 MS.gene38610:CDS
TTCTTCCAGATGCAAAAGAT+GGG 0.522138 3.2:+84235884 MS.gene38610:CDS
TGGGCTGAAAAGGAAACAAA+AGG 0.525295 3.2:+84235589 MS.gene38610:CDS
TGGTCAGCTACAAAGTCTAT+CGG 0.526901 3.2:-84236228 None:intergenic
AAAGATGCTGCTCCCGCGGG+CGG 0.538295 3.2:+84235129 MS.gene38610:CDS
GCAATCGTTTCTTTGAAGGA+AGG 0.545997 3.2:-84235207 None:intergenic
AGCGCAGTTTGGAGCGACAA+TGG 0.549289 3.2:-84234988 None:intergenic
GGTCAGCTACAAAGTCTATC+GGG 0.550869 3.2:-84236227 None:intergenic
AGACAAGTGTGGACCGCCCG+CGG 0.555562 3.2:-84235142 None:intergenic
CATTATACTTCAAAGGAGCA+TGG 0.562007 3.2:+84235677 MS.gene38610:CDS
CTTAGTCTTCCTTACAAGCA+AGG 0.563134 3.2:+84235829 MS.gene38610:CDS
GTTAGGTTTGATTGAGAAAG+CGG 0.567281 3.2:+84235909 MS.gene38610:CDS
GACAAGTGTGGACCGCCCGC+GGG 0.568807 3.2:-84235141 None:intergenic
GGAGAACAAATGGTTGGCGA+TGG 0.571262 3.2:-84234929 None:intergenic
CCTTTATGACTAGCATGAAG+AGG 0.571406 3.2:+84235773 MS.gene38610:CDS
GTCATTGAAGTAGATGAAGA+AGG 0.574799 3.2:+84236138 MS.gene38610:CDS
ATCACTTGATTTCATTAACA+AGG 0.575009 3.2:+84235254 MS.gene38610:CDS
AGTTAAGATCATCCAGCAAG+AGG 0.580534 3.2:-84236318 None:intergenic
CAAGCTTCCTCATACAAAAG+TGG 0.592026 3.2:+84235957 MS.gene38610:CDS
GCTACAAAGTCTATCGGGAT+CGG 0.596547 3.2:-84236222 None:intergenic
TCTCAATGGCACCTCAGTCA+AGG 0.599345 3.2:+84235747 MS.gene38610:CDS
ATTATACTTCAAAGGAGCAT+GGG 0.601138 3.2:+84235678 MS.gene38610:CDS
CTTGCTTGTAAGGAAGACTA+AGG 0.608424 3.2:-84235828 None:intergenic
CATCCTAATTCCCGTGAATG+CGG 0.615111 3.2:-84236172 None:intergenic
GAAATCAAGTGATTTGAGAG+TGG 0.625530 3.2:-84235244 None:intergenic
CCTCATACAAAAGTGGTGGT+AGG 0.629641 3.2:+84235964 MS.gene38610:CDS
TGTGTTGAAGGAGTTAGGAG+TGG 0.642269 3.2:+84236038 MS.gene38610:CDS
TGACTGAGGTGCCATTGAGA+AGG 0.673594 3.2:-84235744 None:intergenic
GCTTCCTCATACAAAAGTGG+TGG 0.680566 3.2:+84235960 MS.gene38610:CDS
GTTAAGCTATCAATCGACCC+AGG 0.699143 3.2:-84235634 None:intergenic
AAGCTATCAATCGACCCAGG+TGG 0.714544 3.2:-84235631 None:intergenic
CATAAAGGGAACCTTGACTG+AGG 0.721556 3.2:-84235758 None:intergenic
AGCAGCATCTTTGAGCACAG+CGG 0.730863 3.2:-84235118 None:intergenic
GACCCTCAGAACCAACAGCG+AGG 0.731995 3.2:-84235017 None:intergenic
GCGTTGGCGGAAGACAAGTG+TGG 0.740554 3.2:-84235153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTTTAACATAGAAAATA+AGG - chr3.2:84235343-84235362 None:intergenic 15.0%
!! ATTAACTTATTATAAATCCC+TGG + chr3.2:84235291-84235310 MS.gene38610:intron 20.0%
!! TATATTTCATATTGCTCTAA+AGG + chr3.2:84235537-84235556 MS.gene38610:intron 20.0%
!! TCAAAAGAAATATTGAATCT+TGG - chr3.2:84236003-84236022 None:intergenic 20.0%
! AATCCAAACAGTGAATTTAT+GGG + chr3.2:84235570-84235589 MS.gene38610:CDS 25.0%
! ACAAATGCATTATACTTCAA+AGG + chr3.2:84235670-84235689 MS.gene38610:CDS 25.0%
! ATCACTTGATTTCATTAACA+AGG + chr3.2:84235254-84235273 MS.gene38610:CDS 25.0%
! CTTGTCTTTATATTCTTCTT+TGG - chr3.2:84234953-84234972 None:intergenic 25.0%
! TCTCTTATCAAAAACAAGAA+AGG - chr3.2:84236255-84236274 None:intergenic 25.0%
! TTATCAAAAACAAGAAAGGA+TGG - chr3.2:84236251-84236270 None:intergenic 25.0%
! TTGATAAGAGAAGATTTATC+TGG + chr3.2:84236264-84236283 MS.gene38610:CDS 25.0%
AGTACTGTAGAAACACTAAT+TGG - chr3.2:84236108-84236127 None:intergenic 30.0%
ATCGATCAATCTAATAACCA+GGG - chr3.2:84235311-84235330 None:intergenic 30.0%
CAATCCAAACAGTGAATTTA+TGG + chr3.2:84235569-84235588 MS.gene38610:CDS 30.0%
TATCGATCAATCTAATAACC+AGG - chr3.2:84235312-84235331 None:intergenic 30.0%
TGAAATTTCTGATGTGTTGA+AGG + chr3.2:84236026-84236045 MS.gene38610:CDS 30.0%
! AACGATTGCTACTGATTATA+TGG + chr3.2:84235221-84235240 MS.gene38610:CDS 30.0%
! ATTATACTTCAAAGGAGCAT+GGG + chr3.2:84235678-84235697 MS.gene38610:CDS 30.0%
! ATTCTTCTTTGGAGAACAAA+TGG - chr3.2:84234942-84234961 None:intergenic 30.0%
AGTAGCAATCGTTTCTTTGA+AGG - chr3.2:84235214-84235233 None:intergenic 35.0%
CATTATACTTCAAAGGAGCA+TGG + chr3.2:84235677-84235696 MS.gene38610:CDS 35.0%
CTCTTCATGCTAGTCATAAA+GGG - chr3.2:84235775-84235794 None:intergenic 35.0%
CTGGTACAATACTCTTTGTT+GGG + chr3.2:84236283-84236302 MS.gene38610:CDS 35.0%
GAAATCAAGTGATTTGAGAG+TGG - chr3.2:84235247-84235266 None:intergenic 35.0%
GAGAAGATAGAGAGTTAAGA+TGG - chr3.2:84235089-84235108 None:intergenic 35.0%
GTCATTGAAGTAGATGAAGA+AGG + chr3.2:84236138-84236157 MS.gene38610:CDS 35.0%
GTTAGGTTTGATTGAGAAAG+CGG + chr3.2:84235909-84235928 MS.gene38610:CDS 35.0%
TAGAGAGTTAAGATGGTTGA+TGG - chr3.2:84235082-84235101 None:intergenic 35.0%
TCTGGTACAATACTCTTTGT+TGG + chr3.2:84236282-84236301 MS.gene38610:CDS 35.0%
TTCTTCCAGATGCAAAAGAT+GGG + chr3.2:84235884-84235903 MS.gene38610:CDS 35.0%
TTTCTTCCAGATGCAAAAGA+TGG + chr3.2:84235883-84235902 MS.gene38610:CDS 35.0%
! AGTGAATTTATGGGCTGAAA+AGG + chr3.2:84235579-84235598 MS.gene38610:CDS 35.0%
! ATTCGTAATTTTCTTCCACC+TGG + chr3.2:84235616-84235635 MS.gene38610:CDS 35.0%
! CAATCGTTTCTTTGAAGGAA+GGG - chr3.2:84235209-84235228 None:intergenic 35.0%
! CAGTTTATCAGTGCTTTTGA+TGG + chr3.2:84235796-84235815 MS.gene38610:CDS 35.0%
! GTTTTACCTTTCTCTTTTGG+AGG + chr3.2:84236060-84236079 MS.gene38610:CDS 35.0%
! TACGATTTTCACCTTCTCAA+TGG + chr3.2:84235733-84235752 MS.gene38610:CDS 35.0%
! TTCGTAATTTTCTTCCACCT+GGG + chr3.2:84235617-84235636 MS.gene38610:CDS 35.0%
! TTCTTTGGAGAACAAATGGT+TGG - chr3.2:84234938-84234957 None:intergenic 35.0%
!! GTGGTTTTACCTTTCTCTTT+TGG + chr3.2:84236057-84236076 MS.gene38610:CDS 35.0%
AATCAGCTTCTGTCCTTTCT+CGG + chr3.2:84235048-84235067 MS.gene38610:CDS 40.0%
CAAGCTTCCTCATACAAAAG+TGG + chr3.2:84235957-84235976 MS.gene38610:CDS 40.0%
CAGCCCATAAATTCACTGTT+TGG - chr3.2:84235576-84235595 None:intergenic 40.0%
CCTCTTCATGCTAGTCATAA+AGG - chr3.2:84235776-84235795 None:intergenic 40.0%
CCTTTATGACTAGCATGAAG+AGG + chr3.2:84235773-84235792 MS.gene38610:CDS 40.0%
CTTGCTTGTAAGGAAGACTA+AGG - chr3.2:84235831-84235850 None:intergenic 40.0%
GTCAAACCTCCAAAAGAGAA+AGG - chr3.2:84236069-84236088 None:intergenic 40.0%
TATGAGGAAGCTTGTCTTCT+AGG - chr3.2:84235951-84235970 None:intergenic 40.0%
TCATCTTCACCTTGCTTGTA+AGG - chr3.2:84235841-84235860 None:intergenic 40.0%
TCTGATGTGTTGAAGGAGTT+AGG + chr3.2:84236033-84236052 MS.gene38610:CDS 40.0%
TGGGCTGAAAAGGAAACAAA+AGG + chr3.2:84235589-84235608 MS.gene38610:CDS 40.0%
TGGTCAGCTACAAAGTCTAT+CGG - chr3.2:84236231-84236250 None:intergenic 40.0%
TTCACGGGAATTAGGATGTA+TGG + chr3.2:84236177-84236196 MS.gene38610:CDS 40.0%
! AACAACCCATCTTTTGCATC+TGG - chr3.2:84235892-84235911 None:intergenic 40.0%
! CTTAGTCTTCCTTACAAGCA+AGG + chr3.2:84235829-84235848 MS.gene38610:CDS 40.0%
! GAAGGAAGGGTATAGAGAAA+GGG - chr3.2:84235196-84235215 None:intergenic 40.0%
! GCAATCGTTTCTTTGAAGGA+AGG - chr3.2:84235210-84235229 None:intergenic 40.0%
! TGAAGGAAGGGTATAGAGAA+AGG - chr3.2:84235197-84235216 None:intergenic 40.0%
!! CAGTGCTTTTGATGGCTTTA+AGG + chr3.2:84235804-84235823 MS.gene38610:CDS 40.0%
!! GACAGAAGCTGATTTTGTGT+GGG - chr3.2:84235042-84235061 None:intergenic 40.0%
!! GATGCAAAAGATGGGTTGTT+AGG + chr3.2:84235892-84235911 MS.gene38610:CDS 40.0%
!! TTTTTCAACCCAAACAGCGT+TGG - chr3.2:84235172-84235191 None:intergenic 40.0%
CAAGTGCATAATCCTCTTGC+TGG + chr3.2:84236306-84236325 MS.gene38610:CDS 45.0%
CATAAAGGGAACCTTGACTG+AGG - chr3.2:84235761-84235780 None:intergenic 45.0%
CATACAACAGTTGCGAGACA+TGG - chr3.2:84235366-84235385 None:intergenic 45.0%
CATCCTAATTCCCGTGAATG+CGG - chr3.2:84236175-84236194 None:intergenic 45.0%
CATGTCTCGCAACTGTTGTA+TGG + chr3.2:84235364-84235383 MS.gene38610:intron 45.0%
CCTCATACAAAAGTGGTGGT+AGG + chr3.2:84235964-84235983 MS.gene38610:CDS 45.0%
GCTACAAAGTCTATCGGGAT+CGG - chr3.2:84236225-84236244 None:intergenic 45.0%
GCTTCCTCATACAAAAGTGG+TGG + chr3.2:84235960-84235979 MS.gene38610:CDS 45.0%
GGAGCAATCGTTTGATGCTT+CGG + chr3.2:84235699-84235718 MS.gene38610:CDS 45.0%
GGTCAGCTACAAAGTCTATC+GGG - chr3.2:84236230-84236249 None:intergenic 45.0%
GTTAAGCTATCAATCGACCC+AGG - chr3.2:84235637-84235656 None:intergenic 45.0%
TGTGTTGAAGGAGTTAGGAG+TGG + chr3.2:84236038-84236057 MS.gene38610:CDS 45.0%
! GATGGACTTTGATCCGAGAA+AGG - chr3.2:84235064-84235083 None:intergenic 45.0%
!! CCTACCACCACTTTTGTATG+AGG - chr3.2:84235967-84235986 None:intergenic 45.0%
!! GGACAGAAGCTGATTTTGTG+TGG - chr3.2:84235043-84235062 None:intergenic 45.0%
!!! TATTTTATTTTTAAATTGTT+TGG - chr3.2:84235425-84235444 None:intergenic 5.0%
AAGCTATCAATCGACCCAGG+TGG - chr3.2:84235634-84235653 None:intergenic 50.0%
AGCAGCATCTTTGAGCACAG+CGG - chr3.2:84235121-84235140 None:intergenic 50.0%
GGAGAACAAATGGTTGGCGA+TGG - chr3.2:84234932-84234951 None:intergenic 50.0%
TCTCAATGGCACCTCAGTCA+AGG + chr3.2:84235747-84235766 MS.gene38610:CDS 50.0%
! TTCAACCCAAACAGCGTTGG+CGG - chr3.2:84235169-84235188 None:intergenic 50.0%
!! TGACTGAGGTGCCATTGAGA+AGG - chr3.2:84235747-84235766 None:intergenic 50.0%
CGCTAAAGCTGCCGCATTCA+CGG + chr3.2:84236161-84236180 MS.gene38610:CDS 55.0%
CTGCCGCATTCACGGGAATT+AGG + chr3.2:84236169-84236188 MS.gene38610:CDS 55.0%
GCTAAAGCTGCCGCATTCAC+GGG + chr3.2:84236162-84236181 MS.gene38610:CDS 55.0%
GTCTTCCGCCAACGCTGTTT+GGG + chr3.2:84235161-84235180 MS.gene38610:CDS 55.0%
TGTCTTCCGCCAACGCTGTT+TGG + chr3.2:84235160-84235179 MS.gene38610:CDS 55.0%
! AGCGCAGTTTGGAGCGACAA+TGG - chr3.2:84234991-84235010 None:intergenic 55.0%
!! CTCCTCGCTGTTGGTTCTGA+GGG + chr3.2:84235015-84235034 MS.gene38610:CDS 55.0%
!! TCTCCTCGCTGTTGGTTCTG+AGG + chr3.2:84235014-84235033 MS.gene38610:CDS 55.0%
CGAGGAGACTGAGCGCAGTT+TGG - chr3.2:84235002-84235021 None:intergenic 60.0%
CTCAAAGATGCTGCTCCCGC+GGG + chr3.2:84235126-84235145 MS.gene38610:CDS 60.0%
GACCCTCAGAACCAACAGCG+AGG - chr3.2:84235020-84235039 None:intergenic 60.0%
GCTCAAAGATGCTGCTCCCG+CGG + chr3.2:84235125-84235144 MS.gene38610:CDS 60.0%
! GCGTTGGCGGAAGACAAGTG+TGG - chr3.2:84235156-84235175 None:intergenic 60.0%
AAAGATGCTGCTCCCGCGGG+CGG + chr3.2:84235129-84235148 MS.gene38610:CDS 65.0%
AGACAAGTGTGGACCGCCCG+CGG - chr3.2:84235145-84235164 None:intergenic 65.0%
GCGCTCAGTCTCCTCGCTGT+TGG + chr3.2:84235006-84235025 MS.gene38610:CDS 65.0%
GACAAGTGTGGACCGCCCGC+GGG - chr3.2:84235144-84235163 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84234925 84236332 84234925 ID=MS.gene38610
chr3.2 mRNA 84234925 84236332 84234925 ID=MS.gene38610.t1;Parent=MS.gene38610
chr3.2 exon 84234925 84235275 84234925 ID=MS.gene38610.t1.exon1;Parent=MS.gene38610.t1
chr3.2 CDS 84234925 84235275 84234925 ID=cds.MS.gene38610.t1;Parent=MS.gene38610.t1
chr3.2 exon 84235559 84236332 84235559 ID=MS.gene38610.t1.exon2;Parent=MS.gene38610.t1
chr3.2 CDS 84235559 84236332 84235559 ID=cds.MS.gene38610.t1;Parent=MS.gene38610.t1
Gene Sequence

>MS.gene38610

ATGACCATCGCCAACCATTTGTTCTCCAAAGAAGAATATAAAGACAAGAATGTAGTGTTTTCGCCATTGTCGCTCCAAACTGCGCTCAGTCTCCTCGCTGTTGGTTCTGAGGGTCCCACACAAAATCAGCTTCTGTCCTTTCTCGGATCAAAGTCCATCAACCATCTTAACTCTCTATCTTCTCAACTCGCTACCGCTGTGCTCAAAGATGCTGCTCCCGCGGGCGGTCCACACTTGTCTTCCGCCAACGCTGTTTGGGTTGAAAAAACCCTTTCTCTATACCCTTCCTTCAAAGAAACGATTGCTACTGATTATATGGCCACTCTCAAATCACTTGATTTCATTAACAAGGTACGTATGAGATATATTAACTTATTATAAATCCCTGGTTATTAGATTGATCGATAAAACGATTCCTTATTTTCTATGTTAAACAATCCATGTCTCGCAACTGTTGTATGGTAGTATAATAACTATATGTTTCATTTGTTTTGTATCCAAACAATTTAAAAATAAAATATGTGAAAATTATATATTAAAAACAAGTTGAATTCTTCTGTTGAAATTCTCATCAAAAAGAACTCACTTGTTATATTTTTGCGCTGCTGATTTTATATTTCATATTGCTCTAAAGGCTAATGAAGCAATCCAAACAGTGAATTTATGGGCTGAAAAGGAAACAAAAGGACTAATTCGTAATTTTCTTCCACCTGGGTCGATTGATAGCTTAACTAGACTCATCTTGACAAATGCATTATACTTCAAAGGAGCATGGGAGCAATCGTTTGATGCTTCGGAAACAAAAGACTACGATTTTCACCTTCTCAATGGCACCTCAGTCAAGGTTCCCTTTATGACTAGCATGAAGAGGCAGTTTATCAGTGCTTTTGATGGCTTTAAGGTCCTTAGTCTTCCTTACAAGCAAGGTGAAGATGAGCGACAATTCTCAATGTACGTTTTTCTTCCAGATGCAAAAGATGGGTTGTTAGGTTTGATTGAGAAAGCGGCTACTGAGTCTAACTTCCTAGAAGACAAGCTTCCTCATACAAAAGTGGTGGTAGGTGATTTCAGAATTCCAAGATTCAATATTTCTTTTGAGCTTGAAATTTCTGATGTGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCTCTTTTGGAGGTTTGACAAAAATAGCAGATTCTCCAATTAGTGTTTCTACAGTACTGCAAAAGTCTGTCATTGAAGTAGATGAAGAAGGCGCTAAAGCTGCCGCATTCACGGGAATTAGGATGTATGGATGTTGTCTAAACACTTCAACTCCGATCCCGATAGACTTTGTAGCTGACCATCCTTTCTTGTTTTTGATAAGAGAAGATTTATCTGGTACAATACTCTTTGTTGGGCAAGTGCATAATCCTCTTGCTGGATGA
Protein sequence

>MS.gene38610.t1

MTIANHLFSKEEYKDKNVVFSPLSLQTALSLLAVGSEGPTQNQLLSFLGSKSINHLNSLSSQLATAVLKDAAPAGGPHLSSANAVWVEKTLSLYPSFKETIATDYMATLKSLDFINKANEAIQTVNLWAEKETKGLIRNFLPPGSIDSLTRLILTNALYFKGAWEQSFDASETKDYDFHLLNGTSVKVPFMTSMKRQFISAFDGFKVLSLPYKQGEDERQFSMYVFLPDAKDGLLGLIEKAATESNFLEDKLPHTKVVVGDFRIPRFNISFELEISDVLKELGVVLPFSFGGLTKIADSPISVSTVLQKSVIEVDEEGAKAAAFTGIRMYGCCLNTSTPIPIDFVADHPFLFLIREDLSGTILFVGQVHNPLAG