AlfalfaGEDB | MS.gene38675

M. sativa cultivar XinJiangDaYe / MS.gene38675

KEGG: K06627
GO: GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0110165
PFAM: PF00134.26 PF02984.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38675.t1	XP_013461731.1	94.3	352	20	0	1	352	1	352	9.30E-183	649.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38675.t1	Q9FMH5	55.2	353	145	4	1	351	11	352	3.2e-99	363.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38675.t1	G8A2C7	94.3	352	20	0	1	352	1	352	6.7e-183	649.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04985	MS.gene38675	0.809291	2.04E-50	-1.69E-46
MS.gene049989	MS.gene38675	0.826095	3.27E-54	-1.69E-46
MS.gene05124	MS.gene38675	0.820679	6.04E-53	-1.69E-46
MS.gene051816	MS.gene38675	0.802636	5.11E-49	-1.69E-46
MS.gene052143	MS.gene38675	0.815577	8.61E-52	-1.69E-46
MS.gene052367	MS.gene38675	0.818034	2.42E-52	-1.69E-46
MS.gene053173	MS.gene38675	0.826924	2.08E-54	-1.69E-46
MS.gene053348	MS.gene38675	0.829963	3.84E-55	-1.69E-46
MS.gene053416	MS.gene38675	0.832252	1.05E-55	-1.69E-46
MS.gene053417	MS.gene38675	0.831458	1.65E-55	-1.69E-46
MS.gene054551	MS.gene38675	0.836929	7.02E-57	-1.69E-46
MS.gene054593	MS.gene38675	0.813606	2.35E-51	-1.69E-46
MS.gene055308	MS.gene38675	0.826296	2.93E-54	-1.69E-46
MS.gene055957	MS.gene38675	0.824428	8.12E-54	-1.69E-46
MS.gene056041	MS.gene38675	0.836564	8.69E-57	-1.69E-46
MS.gene056042	MS.gene38675	0.806465	8.12E-50	-1.69E-46
MS.gene05640	MS.gene38675	0.829954	3.86E-55	-1.69E-46
MS.gene056526	MS.gene38675	0.815907	7.27E-52	-1.69E-46
MS.gene059300	MS.gene38675	0.802038	6.78E-49	-1.69E-46
MS.gene059553	MS.gene38675	0.824358	8.43E-54	-1.69E-46
MS.gene06093	MS.gene38675	0.841704	4.04E-58	-1.69E-46
MS.gene061099	MS.gene38675	0.827406	1.59E-54	-1.69E-46
MS.gene061260	MS.gene38675	0.815542	8.76E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38675.t1	MTR_3g102530	94.318	352	20	0	1	352	1	352	0.0	681
MS.gene38675.t1	MTR_3g102520	69.359	359	103	3	1	352	1	359	7.30e-177	495
MS.gene38675.t1	MTR_3g102510	69.081	359	85	5	1	352	1	340	7.98e-174	486
MS.gene38675.t1	MTR_1g018680	63.197	269	99	0	82	350	89	357	5.39e-121	353
MS.gene38675.t1	MTR_3g102560	51.714	350	141	5	1	349	2	324	1.07e-109	323
MS.gene38675.t1	MTR_3g102540	57.252	262	106	3	88	349	13	268	1.85e-96	288
MS.gene38675.t1	MTR_3g107970	49.810	263	130	1	80	342	209	469	5.71e-85	265
MS.gene38675.t1	MTR_1g011470	49.049	263	132	1	80	342	157	417	4.31e-83	258
MS.gene38675.t1	MTR_3g088415	46.442	267	141	1	84	350	240	504	8.23e-82	258
MS.gene38675.t1	MTR_3g088405	46.642	268	139	2	84	349	243	508	2.51e-80	254
MS.gene38675.t1	MTR_2g102520	45.361	291	148	4	67	349	192	479	1.57e-74	238
MS.gene38675.t1	MTR_2g102550	45.489	266	142	2	84	349	167	429	5.49e-73	233
MS.gene38675.t1	MTR_3g088415	49.261	203	101	1	84	286	240	440	2.25e-66	216
MS.gene38675.t1	MTR_3g088415	52.703	148	68	1	84	231	240	385	1.77e-48	168
MS.gene38675.t1	MTR_8g074000	31.548	336	212	7	6	336	97	419	8.46e-46	162
MS.gene38675.t1	MTR_5g088980	38.710	217	127	3	112	327	189	400	7.36e-44	156
MS.gene38675.t1	MTR_5g023790	32.792	308	181	6	39	336	124	415	2.99e-43	155
MS.gene38675.t1	MTR_7g089080	34.831	267	159	5	85	339	187	450	2.03e-41	155
MS.gene38675.t1	MTR_5g023790	34.483	261	145	6	39	289	124	368	3.79e-39	143
MS.gene38675.t1	MTR_5g023790	34.615	208	116	4	39	236	124	321	7.29e-29	115
MS.gene38675.t1	MTR_3g060770	33.333	225	133	7	119	338	60	272	6.94e-26	105
MS.gene38675.t1	MTR_3g060410	34.171	199	122	5	115	308	131	325	2.83e-24	102
MS.gene38675.t1	MTR_3g061680	34.872	195	118	5	115	304	46	236	1.81e-23	98.6
MS.gene38675.t1	MTR_3g060820	33.846	195	120	5	115	304	46	236	9.58e-22	93.6
MS.gene38675.t1	MTR_3g060400	31.034	203	123	6	115	308	52	246	2.06e-19	87.4
MS.gene38675.t1	MTR_3g460990	31.034	203	123	6	115	308	52	246	2.06e-19	87.4
MS.gene38675.t1	MTR_5g044040	41.772	79	46	0	141	219	7	85	1.81e-14	69.7
MS.gene38675.t1	MTR_1g032850	30.818	159	102	4	120	275	372	525	1.04e-11	66.2
MS.gene38675.t1	MTR_5g011900	29.452	146	102	1	112	257	95	239	1.26e-11	64.3
MS.gene38675.t1	MTR_5g015670	33.333	132	78	4	118	241	101	230	3.05e-11	64.3
MS.gene38675.t1	MTR_1g107535	32.484	157	95	6	124	273	111	263	8.70e-11	63.2
MS.gene38675.t1	MTR_5g032550	27.586	174	117	5	62	229	35	205	9.98e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38675.t1	AT5G43080	55.682	352	142	4	3	351	12	352	1.75e-133	385
MS.gene38675.t1	AT5G43080	54.830	352	140	5	3	351	12	347	1.63e-129	375
MS.gene38675.t1	AT1G47210	52.632	361	157	3	3	351	11	369	1.48e-127	370
MS.gene38675.t1	AT1G47230	52.632	361	150	4	3	351	11	362	4.51e-126	367
MS.gene38675.t1	AT1G47230	52.486	362	150	5	3	351	11	363	4.03e-124	362
MS.gene38675.t1	AT1G47220	56.184	283	124	0	69	351	41	323	1.60e-108	320
MS.gene38675.t1	AT1G44110	40.909	352	196	4	2	349	114	457	8.73e-83	259
MS.gene38675.t1	AT1G80370	50.000	266	130	2	84	349	197	459	1.73e-82	258
MS.gene38675.t1	AT5G11300	50.195	257	126	1	84	340	172	426	5.41e-81	254
MS.gene38675.t1	AT5G25380	38.642	383	195	5	4	349	56	435	5.32e-79	248
MS.gene38675.t1	AT5G25380	38.642	383	195	5	4	349	56	435	5.32e-79	248
MS.gene38675.t1	AT5G25380	47.368	266	137	2	84	349	179	441	1.48e-78	248
MS.gene38675.t1	AT1G15570	48.120	266	135	2	84	349	188	450	1.21e-77	245
MS.gene38675.t1	AT1G77390	43.985	266	147	1	84	349	178	441	1.49e-74	237
MS.gene38675.t1	AT5G25380	37.808	365	188	4	4	331	56	418	7.01e-74	235
MS.gene38675.t1	AT5G11300	49.550	222	101	2	84	296	172	391	1.75e-67	218
MS.gene38675.t1	AT3G11520	39.583	240	135	5	91	329	164	394	1.83e-44	158
MS.gene38675.t1	AT1G47210	47.826	184	82	3	3	174	11	192	2.40e-44	151
MS.gene38675.t1	AT5G06150	37.255	255	146	6	84	336	182	424	4.16e-43	155
MS.gene38675.t1	AT3G11520	41.818	220	118	5	91	309	164	374	7.61e-43	153
MS.gene38675.t1	AT2G26760	38.372	258	149	4	84	340	130	378	8.12e-42	150
MS.gene38675.t1	AT4G37490	35.496	262	153	5	84	339	165	416	3.20e-40	147
MS.gene38675.t1	AT1G20610	34.222	225	142	2	112	336	202	420	3.71e-38	141
MS.gene38675.t1	AT1G16330	29.358	327	203	7	30	345	338	647	1.68e-37	142
MS.gene38675.t1	AT4G35620	38.496	226	133	2	112	337	197	416	3.30e-37	139
MS.gene38675.t1	AT1G76310	32.812	256	162	5	84	338	177	423	1.63e-36	137
MS.gene38675.t1	AT2G17620	35.659	258	157	4	84	341	171	419	1.89e-35	134
MS.gene38675.t1	AT1G76310	35.268	224	131	7	84	306	177	387	2.04e-33	127
MS.gene38675.t1	AT4G35620	41.622	185	99	3	112	296	197	372	2.04e-33	127
MS.gene38675.t1	AT1G76310	30.070	286	158	7	84	338	177	451	1.64e-31	124
MS.gene38675.t1	AT5G06150	40.645	155	88	3	84	238	182	332	3.24e-28	112
MS.gene38675.t1	AT1G76310	35.754	179	106	4	69	246	167	337	2.22e-25	105
MS.gene38675.t1	AT1G20590	35.032	157	96	2	148	304	66	216	9.31e-24	99.0
MS.gene38675.t1	AT1G14750	31.928	166	103	4	114	275	213	372	4.77e-14	73.2
MS.gene38675.t1	AT1G14750	31.928	166	103	4	114	275	381	540	1.36e-13	72.4
MS.gene38675.t1	AT1G14750	31.928	166	103	4	114	275	381	540	1.47e-13	72.0
MS.gene38675.t1	AT1G14750	32.530	166	101	5	114	275	213	371	6.12e-13	69.7
MS.gene38675.t1	AT1G34460	27.228	202	121	6	34	234	222	398	2.89e-11	65.1
MS.gene38675.t1	AT1G34460	27.228	202	121	6	34	234	222	398	2.99e-11	65.1
MS.gene38675.t1	AT1G34460	27.228	202	121	6	34	234	222	398	2.99e-11	65.1
MS.gene38675.t1	AT1G34460	27.228	202	121	6	34	234	222	398	2.99e-11	65.1
MS.gene38675.t1	AT1G34460	27.228	202	121	6	34	234	222	398	2.99e-11	65.1
MS.gene38675.t1	AT1G34460	29.268	164	92	4	71	234	256	395	3.04e-11	64.7
MS.gene38675.t1	AT1G34460	29.268	164	92	4	71	234	256	395	3.04e-11	64.7
MS.gene38675.t1	AT1G34460	27.228	202	121	6	34	234	222	398	3.25e-11	64.7
MS.gene38675.t1	AT1G34460	29.268	164	92	4	71	234	245	384	3.35e-11	64.7

Find 63 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTAATGATTCGGTATTTC+TGG	0.133993	3.3:+84727608	None:intergenic
AACATTGAGATTTGGTAAAT+TGG	0.141731	3.3:+84729237	None:intergenic
TATAAGATTCTTGCCTTCTA+TGG	0.225037	3.3:-84728048	MS.gene38675:CDS
CGAAAAGCATCAGATTTCTT+TGG	0.242110	3.3:+84729181	None:intergenic
TTCTTCAAAGCTTGGGGTTT+AGG	0.269795	3.3:+84729211	None:intergenic
TGTGTTTCAGGGAGTTTATT+GGG	0.316830	3.3:-84728257	MS.gene38675:intron
TTGTGTTTCAGGGAGTTTAT+TGG	0.330833	3.3:-84728258	MS.gene38675:intron
CTTAAGATTCTTCAAAGCTT+GGG	0.349798	3.3:+84729204	None:intergenic
CTGCATCATTGAAAGCTGTT+AGG	0.351797	3.3:-84727773	MS.gene38675:CDS
TTAGGAGAAACATTGAGATT+TGG	0.357415	3.3:+84729229	None:intergenic
TGCAAATATGAGAGGGATAC+TGG	0.359853	3.3:-84728876	MS.gene38675:CDS
ACATTGAGATTTGGTAAATT+GGG	0.388776	3.3:+84729238	None:intergenic
ACTGGTGGATTGGTTGGTTG+AGG	0.392164	3.3:-84728858	MS.gene38675:CDS
CTCCATTGAGCGAAGATAGT+TGG	0.398802	3.3:+84729060	None:intergenic
ATTTACCTGTTTCAGCTCAT+AGG	0.414612	3.3:+84728554	None:intergenic
TTCCAACTATCTTCGCTCAA+TGG	0.418966	3.3:-84729062	MS.gene38675:CDS
TTCTCAATGTAACCAATCAT+TGG	0.419188	3.3:+84728917	None:intergenic
TCAGACTTCAAAATTGCAAA+TGG	0.420778	3.3:-84728120	MS.gene38675:intron
CATAGGTGTTATCAGTAATC+TGG	0.421415	3.3:+84728571	None:intergenic
ATGATTTGTATTTGGTAAGA+AGG	0.426700	3.3:-84727797	MS.gene38675:CDS
AGGGATACTGGTGGATTGGT+TGG	0.431112	3.3:-84728864	MS.gene38675:CDS
GCTTAAGATTCTTCAAAGCT+TGG	0.433122	3.3:+84729203	None:intergenic
ACAGATGCAGCCACCATAGA+AGG	0.440042	3.3:+84728035	None:intergenic
TCTTCTTCAAAGTAATGATT+CGG	0.449568	3.3:+84727599	None:intergenic
TCTGTCCTGGAGTACATCCT+TGG	0.470472	3.3:-84727989	MS.gene38675:CDS
AGATCTAAGCTTCAATTGCT+TGG	0.471495	3.3:-84728749	MS.gene38675:CDS
CTGTCCTGGAGTACATCCTT+GGG	0.473386	3.3:-84727988	MS.gene38675:intron
TAACACCTATGAGCTGAAAC+AGG	0.475070	3.3:-84728559	MS.gene38675:intron
TGGCAGAAATCAACAGCCTT+AGG	0.476524	3.3:+84728591	None:intergenic
TTATAAATCTGCTGAGTTGG+AGG	0.476698	3.3:-84727838	MS.gene38675:CDS
TTCGGTATTTCTGGTGATGA+AGG	0.481066	3.3:+84727617	None:intergenic
AGATGGAGACTCGTGCTTCA+AGG	0.481168	3.3:-84729327	MS.gene38675:CDS
TGATTTGTATTTGGTAAGAA+GGG	0.489410	3.3:-84727796	MS.gene38675:CDS
TGCATCATTGAAAGCTGTTA+GGG	0.496113	3.3:-84727772	MS.gene38675:CDS
GTCTGCTACTGAAGATCTAA+AGG	0.501507	3.3:-84728235	MS.gene38675:intron
TTTGAAACAGTTCAAGAATG+TGG	0.504612	3.3:-84727648	MS.gene38675:intron
TGAGAGGGATACTGGTGGAT+TGG	0.508165	3.3:-84728868	MS.gene38675:CDS
TGTATGAAACAGCAAGATGA+AGG	0.514862	3.3:+84728804	None:intergenic
AAGATTCTTGCCTTCTATGG+TGG	0.516025	3.3:-84728045	MS.gene38675:CDS
TTGGAAATATCAGCTGCATA+AGG	0.517296	3.3:+84729079	None:intergenic
GCTAGATTCATAATCTGTCC+TGG	0.524506	3.3:-84728002	MS.gene38675:CDS
AGACTCGTGCTTCAAGGAAG+AGG	0.525994	3.3:-84729321	MS.gene38675:CDS
ACAGCAAGATGAAGGGTTTG+AGG	0.530736	3.3:+84728812	None:intergenic
GTATTTCTGGTGATGAAGGA+AGG	0.551734	3.3:+84727621	None:intergenic
TTAAGATTCTTCAAAGCTTG+GGG	0.554495	3.3:+84729205	None:intergenic
TGAAGAAATCTCCCCACCTA+AGG	0.559560	3.3:-84728607	MS.gene38675:CDS
ATCTTACGATGCAATGAGCA+TGG	0.562094	3.3:+84728718	None:intergenic
TTTAGAAAAGTGTTAACATG+AGG	0.564833	3.3:+84728367	None:intergenic
TTAGAAAAGTGTTAACATGA+GGG	0.569090	3.3:+84728368	None:intergenic
CAGAAATCAACAGCCTTAGG+TGG	0.572140	3.3:+84728594	None:intergenic
TTTACCCAAGGATGTACTCC+AGG	0.572732	3.3:+84727984	None:intergenic
GTTCGTGTAGGTCATTAAGA+TGG	0.575091	3.3:-84728431	MS.gene38675:intron
AGAAATCAACAGCCTTAGGT+GGG	0.577007	3.3:+84728595	None:intergenic
TGTTGACAGACTCATTAGAC+AGG	0.583886	3.3:+84728771	None:intergenic
GACTCGTGCTTCAAGGAAGA+GGG	0.598522	3.3:-84729320	MS.gene38675:CDS
CAACTATCTTCGCTCAATGG+AGG	0.603706	3.3:-84729059	MS.gene38675:intron
GGTGTTACTGCAAATATGAG+AGG	0.608167	3.3:-84728884	MS.gene38675:CDS
TACATTGAGAAAGTTCAAAG+AGG	0.622312	3.3:-84728905	MS.gene38675:CDS
GTGTTACTGCAAATATGAGA+GGG	0.631608	3.3:-84728883	MS.gene38675:CDS
GTATGAAACAGCAAGATGAA+GGG	0.636902	3.3:+84728805	None:intergenic
GAAATCAACAGCCTTAGGTG+GGG	0.656360	3.3:+84728596	None:intergenic
GGAGAAATACAAGCAACACA+AGG	0.682277	3.3:-84727751	MS.gene38675:intron
AAATATGAGAGGGATACTGG+TGG	0.717057	3.3:-84728873	MS.gene38675:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTAGTTTTTTGAATTTT+TGG	-	chr3.3:84727946-84727965	MS.gene38675:intron	10.0%
!!!	TTTTTTTTTTTACAATTCAT+GGG	-	chr3.3:84727923-84727942	MS.gene38675:intron	10.0%
!!!	TTTTTTTTTTTTACAATTCA+TGG	-	chr3.3:84727922-84727941	MS.gene38675:intron	10.0%
!!	AATTCAAACAAGAAAAAAAT+CGG	+	chr3.3:84728419-84728438	None:intergenic	15.0%
!!	ATATTAACTATAACAAAGAA+AGG	+	chr3.3:84729207-84729226	None:intergenic	15.0%
!!!	CAATTTTTTAAAGAAACAAA+TGG	+	chr3.3:84728988-84729007	None:intergenic	15.0%
!!	TCTTAACAACAAAAAACAAA+GGG	-	chr3.3:84727642-84727661	MS.gene38675:intron	20.0%
!!	TGTTATAGTTAATATATAGC+TGG	-	chr3.3:84729212-84729231	MS.gene38675:CDS	20.0%
!!	TTCTTAACAACAAAAAACAA+AGG	-	chr3.3:84727641-84727660	MS.gene38675:CDS	20.0%
!!!	AAGTCATTGAATTTTGAAAT+GGG	-	chr3.3:84728526-84728545	MS.gene38675:intron	20.0%
!!!	GATTTTACATGATTTGTATT+TGG	-	chr3.3:84729115-84729134	MS.gene38675:CDS	20.0%
!!!	TAAGTCATTGAATTTTGAAA+TGG	-	chr3.3:84728525-84728544	MS.gene38675:intron	20.0%
!!!	TTTTTGTTGTTAAGAACAAT+TGG	+	chr3.3:84727637-84727656	None:intergenic	20.0%
!	CAATTAACTTCATTTCAACA+AGG	+	chr3.3:84728617-84728636	None:intergenic	25.0%
!	CTTGTTGAAATGAAGTTAAT+TGG	-	chr3.3:84728615-84728634	MS.gene38675:CDS	25.0%
!	TAACATCAAATATTTACCCA+AGG	+	chr3.3:84728951-84728970	None:intergenic	25.0%
!	TCTTCTTCAAAGTAATGATT+CGG	+	chr3.3:84729324-84729343	None:intergenic	25.0%
!!	AACATTGAGATTTGGTAAAT+TGG	+	chr3.3:84727686-84727705	None:intergenic	25.0%
!!	ACATTGAGATTTGGTAAATT+GGG	+	chr3.3:84727685-84727704	None:intergenic	25.0%
!!	ATGATTTGTATTTGGTAAGA+AGG	-	chr3.3:84729123-84729142	MS.gene38675:CDS	25.0%
!!	TGATTTGTATTTGGTAAGAA+GGG	-	chr3.3:84729124-84729143	MS.gene38675:CDS	25.0%
!!!	AAAAAACAAAGGGTTGTTTT+GGG	-	chr3.3:84727652-84727671	MS.gene38675:intron	25.0%
!!!	GTTAACACTTTTCTAAAGTA+AGG	-	chr3.3:84728559-84728578	MS.gene38675:intron	25.0%
!!!	TTAGAAAAGTGTTAACATGA+GGG	+	chr3.3:84728555-84728574	None:intergenic	25.0%
!!!	TTTAGAAAAGTGTTAACATG+AGG	+	chr3.3:84728556-84728575	None:intergenic	25.0%
	AAAAAGAGAAGACCAATGAT+TGG	-	chr3.3:84727991-84728010	MS.gene38675:CDS	30.0%
	AGTAGATTTCATTTAATCCC+AGG	-	chr3.3:84728439-84728458	MS.gene38675:intron	30.0%
	ATGTGCAATAATTGTGTTTC+AGG	-	chr3.3:84728651-84728670	MS.gene38675:intron	30.0%
	ATGTTAATTGATGTTCGTGT+AGG	-	chr3.3:84728477-84728496	MS.gene38675:intron	30.0%
	ATTATAAACAAAAGACCCCT+GGG	+	chr3.3:84728459-84728478	None:intergenic	30.0%
	CTTAAGATTCTTCAAAGCTT+GGG	+	chr3.3:84727719-84727738	None:intergenic	30.0%
	GTAGATTTCATTTAATCCCA+GGG	-	chr3.3:84728440-84728459	MS.gene38675:intron	30.0%
	TACATTGAGAAAGTTCAAAG+AGG	-	chr3.3:84728015-84728034	MS.gene38675:CDS	30.0%
	TAGATTTCATTTAATCCCAG+GGG	-	chr3.3:84728441-84728460	MS.gene38675:intron	30.0%
	TATAAGATTCTTGCCTTCTA+TGG	-	chr3.3:84728872-84728891	MS.gene38675:CDS	30.0%
	TCAGACTTCAAAATTGCAAA+TGG	-	chr3.3:84728800-84728819	MS.gene38675:CDS	30.0%
	TGTGCAATAATTGTGTTTCA+GGG	-	chr3.3:84728652-84728671	MS.gene38675:intron	30.0%
	TTAAGATTCTTCAAAGCTTG+GGG	+	chr3.3:84727718-84727737	None:intergenic	30.0%
	TTAGGAGAAACATTGAGATT+TGG	+	chr3.3:84727694-84727713	None:intergenic	30.0%
	TTCTCAATGTAACCAATCAT+TGG	+	chr3.3:84728006-84728025	None:intergenic	30.0%
!	CAAAAAACAAAGGGTTGTTT+TGG	-	chr3.3:84727651-84727670	MS.gene38675:intron	30.0%
!	GTTTTATAAATCTGCTGAGT+TGG	-	chr3.3:84729079-84729098	MS.gene38675:CDS	30.0%
!	TTTGAAACAGTTCAAGAATG+TGG	-	chr3.3:84729272-84729291	MS.gene38675:CDS	30.0%
!!	AAGTAATGATTCGGTATTTC+TGG	+	chr3.3:84729315-84729334	None:intergenic	30.0%
!!!	TTTTGGTTTGATTGTTTCTC+AGG	-	chr3.3:84727963-84727982	MS.gene38675:intron	30.0%
	AGATCTAAGCTTCAATTGCT+TGG	-	chr3.3:84728171-84728190	MS.gene38675:intron	35.0%
	ATTTACCTGTTTCAGCTCAT+AGG	+	chr3.3:84728369-84728388	None:intergenic	35.0%
	CATTATAAACAAAAGACCCC+TGG	+	chr3.3:84728460-84728479	None:intergenic	35.0%
	GCTTAAGATTCTTCAAAGCT+TGG	+	chr3.3:84727720-84727739	None:intergenic	35.0%
	GTATGAAACAGCAAGATGAA+GGG	+	chr3.3:84728118-84728137	None:intergenic	35.0%
	TGCATCATTGAAAGCTGTTA+GGG	-	chr3.3:84729148-84729167	MS.gene38675:CDS	35.0%
	TGTATGAAACAGCAAGATGA+AGG	+	chr3.3:84728119-84728138	None:intergenic	35.0%
	TGTGTTTCAGGGAGTTTATT+GGG	-	chr3.3:84728663-84728682	MS.gene38675:intron	35.0%
	TTGGAAATATCAGCTGCATA+AGG	+	chr3.3:84727844-84727863	None:intergenic	35.0%
	TTGTGTTTCAGGGAGTTTAT+TGG	-	chr3.3:84728662-84728681	MS.gene38675:intron	35.0%
!	CATAGGTGTTATCAGTAATC+TGG	+	chr3.3:84728352-84728371	None:intergenic	35.0%
!	GTGTTACTGCAAATATGAGA+GGG	-	chr3.3:84728037-84728056	MS.gene38675:CDS	35.0%
!	TTATAAATCTGCTGAGTTGG+AGG	-	chr3.3:84729082-84729101	MS.gene38675:CDS	35.0%
!!	CGAAAAGCATCAGATTTCTT+TGG	+	chr3.3:84727742-84727761	None:intergenic	35.0%
!!	GATGCTTTTCGTTTGTTTTC+TGG	-	chr3.3:84727751-84727770	MS.gene38675:intron	35.0%
!!!	GCATTGTTTTTGCTGAAATC+TGG	+	chr3.3:84727793-84727812	None:intergenic	35.0%
	AAATATGAGAGGGATACTGG+TGG	-	chr3.3:84728047-84728066	MS.gene38675:CDS	40.0%
	AAGATTCTTGCCTTCTATGG+TGG	-	chr3.3:84728875-84728894	MS.gene38675:CDS	40.0%
	AGAAATCAACAGCCTTAGGT+GGG	+	chr3.3:84728328-84728347	None:intergenic	40.0%
	ATCTTACGATGCAATGAGCA+TGG	+	chr3.3:84728205-84728224	None:intergenic	40.0%
	CTGCATCATTGAAAGCTGTT+AGG	-	chr3.3:84729147-84729166	MS.gene38675:CDS	40.0%
	GCTAGATTCATAATCTGTCC+TGG	-	chr3.3:84728918-84728937	MS.gene38675:CDS	40.0%
	GGAGAAATACAAGCAACACA+AGG	-	chr3.3:84729169-84729188	MS.gene38675:CDS	40.0%
	GTCTGCTACTGAAGATCTAA+AGG	-	chr3.3:84728685-84728704	MS.gene38675:intron	40.0%
	GTTCGTGTAGGTCATTAAGA+TGG	-	chr3.3:84728489-84728508	MS.gene38675:intron	40.0%
	TAACACCTATGAGCTGAAAC+AGG	-	chr3.3:84728361-84728380	MS.gene38675:intron	40.0%
	TGCAAATATGAGAGGGATAC+TGG	-	chr3.3:84728044-84728063	MS.gene38675:CDS	40.0%
	TGTTGACAGACTCATTAGAC+AGG	+	chr3.3:84728152-84728171	None:intergenic	40.0%
	TTCCAACTATCTTCGCTCAA+TGG	-	chr3.3:84727858-84727877	MS.gene38675:CDS	40.0%
	TTCTTCAAAGCTTGGGGTTT+AGG	+	chr3.3:84727712-84727731	None:intergenic	40.0%
!!	GGTGTTACTGCAAATATGAG+AGG	-	chr3.3:84728036-84728055	MS.gene38675:CDS	40.0%
!!	GTATTTCTGGTGATGAAGGA+AGG	+	chr3.3:84729302-84729321	None:intergenic	40.0%
!!	TTCGGTATTTCTGGTGATGA+AGG	+	chr3.3:84729306-84729325	None:intergenic	40.0%
	ACAGCAAGATGAAGGGTTTG+AGG	+	chr3.3:84728111-84728130	None:intergenic	45.0%
	CAACTATCTTCGCTCAATGG+AGG	-	chr3.3:84727861-84727880	MS.gene38675:CDS	45.0%
	CAGAAATCAACAGCCTTAGG+TGG	+	chr3.3:84728329-84728348	None:intergenic	45.0%
	CTCCATTGAGCGAAGATAGT+TGG	+	chr3.3:84727863-84727882	None:intergenic	45.0%
	GAAATCAACAGCCTTAGGTG+GGG	+	chr3.3:84728327-84728346	None:intergenic	45.0%
	TGAAGAAATCTCCCCACCTA+AGG	-	chr3.3:84728313-84728332	MS.gene38675:intron	45.0%
	TGGCAGAAATCAACAGCCTT+AGG	+	chr3.3:84728332-84728351	None:intergenic	45.0%
	TTTACCCAAGGATGTACTCC+AGG	+	chr3.3:84728939-84728958	None:intergenic	45.0%
	ACAGATGCAGCCACCATAGA+AGG	+	chr3.3:84728888-84728907	None:intergenic	50.0%
	AGACTCGTGCTTCAAGGAAG+AGG	-	chr3.3:84727599-84727618	MS.gene38675:CDS	50.0%
	CTGTCCTGGAGTACATCCTT+GGG	-	chr3.3:84728932-84728951	MS.gene38675:CDS	50.0%
	GACTCGTGCTTCAAGGAAGA+GGG	-	chr3.3:84727600-84727619	MS.gene38675:CDS	50.0%
	TCTGTCCTGGAGTACATCCT+TGG	-	chr3.3:84728931-84728950	MS.gene38675:CDS	50.0%
!	TGAGAGGGATACTGGTGGAT+TGG	-	chr3.3:84728052-84728071	MS.gene38675:CDS	50.0%
!!	ACTGGTGGATTGGTTGGTTG+AGG	-	chr3.3:84728062-84728081	MS.gene38675:CDS	50.0%
!!	AGGGATACTGGTGGATTGGT+TGG	-	chr3.3:84728056-84728075	MS.gene38675:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	84727595	84729347	84727595	ID=MS.gene38675
chr3.3	mRNA	84727595	84729347	84727595	ID=MS.gene38675.t1;Parent=MS.gene38675
chr3.3	exon	84729060	84729347	84729060	ID=MS.gene38675.t1.exon1;Parent=MS.gene38675.t1
chr3.3	CDS	84729060	84729347	84729060	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1
chr3.3	exon	84728725	84728957	84728725	ID=MS.gene38675.t1.exon2;Parent=MS.gene38675.t1
chr3.3	CDS	84728725	84728957	84728725	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1
chr3.3	exon	84728560	84728635	84728560	ID=MS.gene38675.t1.exon3;Parent=MS.gene38675.t1
chr3.3	CDS	84728560	84728635	84728560	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1
chr3.3	exon	84728367	84728443	84728367	ID=MS.gene38675.t1.exon4;Parent=MS.gene38675.t1
chr3.3	CDS	84728367	84728443	84728367	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1
chr3.3	exon	84728236	84728269	84728236	ID=MS.gene38675.t1.exon5;Parent=MS.gene38675.t1
chr3.3	CDS	84728236	84728269	84728236	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1
chr3.3	exon	84727989	84728138	84727989	ID=MS.gene38675.t1.exon6;Parent=MS.gene38675.t1
chr3.3	CDS	84727989	84728138	84727989	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1
chr3.3	exon	84727752	84727886	84727752	ID=MS.gene38675.t1.exon7;Parent=MS.gene38675.t1
chr3.3	CDS	84727752	84727886	84727752	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1
chr3.3	exon	84727595	84727660	84727595	ID=MS.gene38675.t1.exon8;Parent=MS.gene38675.t1
chr3.3	CDS	84727595	84727660	84727595	ID=cds.MS.gene38675.t1;Parent=MS.gene38675.t1

Gene Sequence

>MS.gene38675

ATGGAGACTCGTGCTTCAAGGAAGAGGGCTAATGCTGAACCAATTGTTCTTAACAACAAAAAACAAAGGGTTGTTTTGGGTGATCTTCCCAATTTACCAAATCTCAATGTTTCTCCTAAACCCCAAGCTTTGAAGAATCTTAAGCCAAAGAAATCTGATGCTTTTCGTTTGTTTTCTGGTTTCAATTTCGATAAGCCAGATTTCAGCAAAAACAATGCAAAATCTGATTATGAAGTGATTTTTGAGCCTTATGCAGCTGATATTTCCAACTATCTTCGCTCAATGGAGGTAAATTTTTATTCTTTTTCTTCAATTTGATTTGTTAATTTTTTTTTTTTTACAATTCATGGGTTTTTAGTTTTTTGAATTTTTGGTTTGATTGTTTCTCAGGTTCAGAAAAAGAGAAGACCAATGATTGGTTACATTGAGAAAGTTCAAAGAGGTGTTACTGCAAATATGAGAGGGATACTGGTGGATTGGTTGGTTGAGGTTGCTGAAGAATACAAGCTTCTTCCTCAAACCCTTCATCTTGCTGTTTCATACATCGACAGATTCCTGTCTAATGAGTCTGTCAACAGATCTAAGCTTCAATTGCTTGGTGTTTCATCCATGCTCATTGCATCGTAAGATCTAAAAAATTGTGTTATGTTTCTGTAATTTTAGTGTTAGTTTGATTTTGTATTTACAATAATTTTACTTTTTAAATTTGTAGAAAGTATGAAGAAATCTCCCCACCTAAGGCTGTTGATTTCTGCCAGATTACTGATAACACCTATGAGCTGAAACAGGTAAATTTCATATTCATGTCTAAGATCTTGTATCCGATTTTTTTCTTGTTTGAATTAGTAGATTTCATTTAATCCCAGGGGTCTTTTGTTTATAATGTTAATTGATGTTCGTGTAGGTCATTAAGATGGAAGCTGACATTCTTAAGTCATTGAATTTTGAAATGGGCAACCCTCATGTTAACACTTTTCTAAAGTAAGGACTTTTAATATTCTTAATTTCAATATCTAAAGCCTTGTTGAAATGAAGTTAATTGGACTAATTATCTCTATGTGCAATAATTGTGTTTCAGGGAGTTTATTGGGTCTGCTACTGAAGATCTAAAGGTAAATTGAACAGTTCATTAACACATGTTTATTCAACAGTTCATTAATATATCAGATTATGTTTACTGTTTTGTTGTTTCGAATTTTCAATTTTCAGACTTCAAAATTGCAAATGGAATTTCTGTGTAACTATCTTGCTGAGCTAAGCTTGATAGACTATGAATGTATAAGATTCTTGCCTTCTATGGTGGCTGCATCTGTTGTATTTCTTGCTAGATTCATAATCTGTCCTGGAGTACATCCTTGGGTAAATATTTGATGTTATGTACTTTAATAATCCATTTGTTTCTTTAAAAAATTGAAGTCATATCTGTATTTCAATGCACTTAATGTTGAGAATCTATTGCAGACTTCATCATTGAGTGAATGCTTGTTTTATAAATCTGCTGAGTTGGAGGAATGTGTTCTGATTTTACATGATTTGTATTTGGTAAGAAGGGCTGCATCATTGAAAGCTGTTAGGGAGAAATACAAGCAACACAAGGTGATTGTTTTAGCCTTTCTTTGTTATAGTTAATATATAGCTGGTTCTTATTATTGCAAGTTGATTGACTTGAAGTGTTTGTTTGAAACAGTTCAAGAATGTGGCAAACCTTCCTTCATCACCAGAAATACCGAATCATTACTTTGAAGAAGATTGA

Protein sequence

>MS.gene38675.t1

METRASRKRANAEPIVLNNKKQRVVLGDLPNLPNLNVSPKPQALKNLKPKKSDAFRLFSGFNFDKPDFSKNNAKSDYEVIFEPYAADISNYLRSMEVQKKRRPMIGYIEKVQRGVTANMRGILVDWLVEVAEEYKLLPQTLHLAVSYIDRFLSNESVNRSKLQLLGVSSMLIASKYEEISPPKAVDFCQITDNTYELKQVIKMEADILKSLNFEMGNPHVNTFLKEFIGSATEDLKTSKLQMEFLCNYLAELSLIDYECIRFLPSMVAASVVFLARFIICPGVHPWTSSLSECLFYKSAELEECVLILHDLYLVRRAASLKAVREKYKQHKFKNVANLPSSPEIPNHYFEED