Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38925.t1 | RHN40757.1 | 84 | 294 | 41 | 3 | 42 | 334 | 22 | 310 | 1.10E-105 | 393.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38925.t1 | Q9LDD1 | 34.4 | 369 | 170 | 13 | 1 | 333 | 1 | 333 | 6.3e-36 | 152.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38925.t1 | A0A396GPW6 | 84.0 | 294 | 41 | 3 | 42 | 334 | 22 | 310 | 8.3e-106 | 393.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene38925 | 0.806827 | 6.81E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene38925 | 0.801231 | 9.93E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene38925 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene38925 | 0.836627 | 8.38E-57 | -1.69E-46 |
| MS.gene054178 | MS.gene38925 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene38925 | 0.800082 | 1.70E-48 | -1.69E-46 |
| MS.gene055141 | MS.gene38925 | 0.807212 | 5.64E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene38925 | 0.81833 | 2.07E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene38925 | 0.841808 | 3.79E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene38925 | 0.834139 | 3.56E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene38925 | 0.816498 | 5.36E-52 | -1.69E-46 |
| MS.gene061160 | MS.gene38925 | 0.833707 | 4.57E-56 | -1.69E-46 |
| MS.gene061188 | MS.gene38925 | 0.802007 | 6.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38925.t1 | MTR_2g069350 | 43.750 | 384 | 146 | 11 | 1 | 333 | 1 | 365 | 1.47e-88 | 270 |
| MS.gene38925.t1 | MTR_2g028830 | 33.889 | 360 | 169 | 9 | 1 | 333 | 1 | 318 | 5.20e-58 | 190 |
| MS.gene38925.t1 | MTR_4g083540 | 35.465 | 344 | 159 | 11 | 1 | 333 | 1 | 292 | 7.11e-58 | 189 |
| MS.gene38925.t1 | MTR_5g013690 | 31.556 | 225 | 129 | 3 | 109 | 333 | 135 | 334 | 1.36e-30 | 118 |
| MS.gene38925.t1 | MTR_5g013690 | 31.556 | 225 | 129 | 3 | 109 | 333 | 72 | 271 | 2.77e-30 | 116 |
| MS.gene38925.t1 | MTR_1g019250 | 28.251 | 223 | 134 | 5 | 109 | 331 | 142 | 338 | 3.51e-23 | 98.6 |
| MS.gene38925.t1 | MTR_4g099060 | 30.222 | 225 | 129 | 3 | 109 | 333 | 134 | 330 | 3.44e-22 | 95.5 |
| MS.gene38925.t1 | MTR_4g099060 | 30.222 | 225 | 129 | 3 | 109 | 333 | 89 | 285 | 4.35e-22 | 94.7 |
| MS.gene38925.t1 | MTR_4g036485 | 26.457 | 223 | 118 | 5 | 101 | 321 | 21 | 199 | 2.04e-20 | 88.2 |
| MS.gene38925.t1 | MTR_3g117970 | 27.706 | 231 | 112 | 6 | 104 | 329 | 11 | 191 | 7.03e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38925.t1 | AT3G12920 | 38.719 | 359 | 168 | 13 | 1 | 333 | 1 | 333 | 1.13e-64 | 208 |
| MS.gene38925.t1 | AT5G45100 | 35.588 | 340 | 164 | 10 | 1 | 333 | 1 | 292 | 5.75e-59 | 192 |
| MS.gene38925.t1 | AT1G79110 | 35.484 | 372 | 182 | 11 | 1 | 333 | 1 | 353 | 2.58e-57 | 189 |
| MS.gene38925.t1 | AT1G79110 | 35.200 | 375 | 182 | 12 | 1 | 333 | 1 | 356 | 3.55e-55 | 184 |
| MS.gene38925.t1 | AT1G79110 | 43.231 | 229 | 117 | 4 | 107 | 333 | 114 | 331 | 3.59e-55 | 183 |
| MS.gene38925.t1 | AT5G45100 | 37.643 | 263 | 122 | 6 | 73 | 333 | 43 | 265 | 6.29e-55 | 181 |
| MS.gene38925.t1 | AT4G19700 | 33.819 | 343 | 176 | 11 | 1 | 333 | 1 | 302 | 8.05e-53 | 176 |
| MS.gene38925.t1 | AT4G35070 | 31.963 | 219 | 118 | 6 | 114 | 331 | 19 | 207 | 1.40e-25 | 102 |
| MS.gene38925.t1 | AT4G35070 | 32.258 | 217 | 116 | 6 | 114 | 329 | 74 | 260 | 2.09e-25 | 103 |
| MS.gene38925.t1 | AT1G32740 | 29.279 | 222 | 129 | 6 | 110 | 329 | 112 | 307 | 7.72e-24 | 100 |
| MS.gene38925.t1 | AT1G32740 | 29.279 | 222 | 129 | 6 | 110 | 329 | 101 | 296 | 7.82e-24 | 99.8 |
| MS.gene38925.t1 | AT1G32740 | 29.279 | 222 | 129 | 6 | 110 | 329 | 68 | 263 | 8.15e-24 | 99.0 |
| MS.gene38925.t1 | AT1G32740 | 29.279 | 222 | 129 | 6 | 110 | 329 | 68 | 263 | 8.15e-24 | 99.0 |
| MS.gene38925.t1 | AT1G60610 | 28.139 | 231 | 145 | 5 | 101 | 331 | 128 | 337 | 1.85e-23 | 99.4 |
| MS.gene38925.t1 | AT1G60610 | 28.139 | 231 | 145 | 5 | 101 | 331 | 128 | 337 | 1.85e-23 | 99.4 |
| MS.gene38925.t1 | AT1G60610 | 28.139 | 231 | 145 | 5 | 101 | 331 | 128 | 337 | 1.85e-23 | 99.4 |
| MS.gene38925.t1 | AT1G60610 | 28.139 | 231 | 145 | 5 | 101 | 331 | 128 | 337 | 1.85e-23 | 99.4 |
| MS.gene38925.t1 | AT1G60610 | 28.139 | 231 | 145 | 5 | 101 | 331 | 128 | 337 | 1.85e-23 | 99.4 |
| MS.gene38925.t1 | AT1G45976 | 28.700 | 223 | 126 | 5 | 109 | 331 | 134 | 323 | 2.25e-23 | 99.0 |
| MS.gene38925.t1 | AT1G10650 | 29.302 | 215 | 127 | 4 | 118 | 331 | 90 | 280 | 2.69e-21 | 92.4 |
| MS.gene38925.t1 | AT1G10650 | 28.037 | 214 | 131 | 3 | 118 | 331 | 146 | 336 | 2.94e-21 | 93.2 |
| MS.gene38925.t1 | AT4G17680 | 30.000 | 220 | 125 | 5 | 113 | 331 | 121 | 312 | 5.83e-21 | 92.0 |
| MS.gene38925.t1 | AT4G17680 | 30.000 | 220 | 125 | 5 | 113 | 331 | 49 | 240 | 7.72e-21 | 90.1 |
| MS.gene38925.t1 | AT5G47050 | 27.126 | 247 | 150 | 4 | 89 | 331 | 77 | 297 | 5.90e-17 | 80.5 |
| MS.gene38925.t1 | AT4G17680 | 31.100 | 209 | 112 | 7 | 125 | 331 | 10 | 188 | 2.90e-16 | 76.3 |
Find 51 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACTGTTACCACTTTC+AGG | 0.214320 | 8.4:-50405905 | MS.gene38925:CDS |
| GTTGAAGTTGAGAAGGAAAA+AGG | 0.285209 | 8.4:+50406112 | None:intergenic |
| AGGGTAGTTATTGTTATTGA+TGG | 0.337872 | 8.4:+50405724 | None:intergenic |
| GAGAGAAACAATGATGATAA+TGG | 0.367299 | 8.4:-50405496 | MS.gene38925:CDS |
| CTTCTCAACTTCAACCCAAT+AGG | 0.388096 | 8.4:-50406104 | MS.gene38925:intron |
| TGCCGTTGCTGCGGCGGTGG+AGG | 0.390131 | 8.4:-50405217 | MS.gene38925:CDS |
| GTGTTCAATGTGTGGGGCTA+TGG | 0.402214 | 8.4:-50405010 | MS.gene38925:CDS |
| AGTAATGACGGCGCAGGATA+AGG | 0.404721 | 8.4:-50405139 | MS.gene38925:CDS |
| AAGATTGTACTATACCTATT+GGG | 0.415314 | 8.4:+50406090 | None:intergenic |
| ACAAATCCTTATGCAACAAA+TGG | 0.418067 | 8.4:-50405292 | MS.gene38925:CDS |
| ATATTCATCATTACTACAAC+AGG | 0.424115 | 8.4:+50405179 | None:intergenic |
| CGTTGCTGCGGCGGTGGAGG+CGG | 0.430174 | 8.4:-50405214 | MS.gene38925:CDS |
| TGCTGCGGCGGTGGAGGCGG+AGG | 0.433823 | 8.4:-50405211 | MS.gene38925:CDS |
| TATGCATGGAGAATCAAATC+TGG | 0.461576 | 8.4:-50405371 | MS.gene38925:CDS |
| TATGTTTGTGTTCAATGTGT+GGG | 0.464104 | 8.4:-50405017 | MS.gene38925:CDS |
| GAAGATGGTGTCTGGTTTCA+CGG | 0.465973 | 8.4:+50405793 | None:intergenic |
| CGCCTCCACCGCCGCAGCAA+CGG | 0.480109 | 8.4:+50405215 | None:intergenic |
| TTGTAAGCGAAGATGGTGTC+TGG | 0.480918 | 8.4:+50405785 | None:intergenic |
| AACGTTGTTGTAAGCGAAGA+TGG | 0.493808 | 8.4:+50405778 | None:intergenic |
| CACAAACATAAGTGTCTACA+AGG | 0.505076 | 8.4:+50405030 | None:intergenic |
| CGGAGGAAATCGGTTATGAA+AGG | 0.505897 | 8.4:+50405830 | None:intergenic |
| GATTTAAAAGAATCACATAT+AGG | 0.512400 | 8.4:+50404976 | None:intergenic |
| AAGGATGAAGGTACTAGTAG+TGG | 0.520250 | 8.4:-50405120 | MS.gene38925:CDS |
| AAAAGTGAAAACACTATGCA+TGG | 0.524997 | 8.4:-50405385 | MS.gene38925:CDS |
| AACAACAACAACGGCTGCGA+CGG | 0.528600 | 8.4:-50405261 | MS.gene38925:CDS |
| TGTAGTAATGATGAATATTG+TGG | 0.529768 | 8.4:-50405174 | MS.gene38925:CDS |
| ATAGATTATGCAGAAACTGT+GGG | 0.549558 | 8.4:-50405080 | MS.gene38925:CDS |
| TTATGTTTGTGTTCAATGTG+TGG | 0.554213 | 8.4:-50405018 | MS.gene38925:CDS |
| GTTGAGATGGTGAGCATCGA+CGG | 0.556642 | 8.4:+50406134 | None:intergenic |
| TTAGACGGAGAAGTTTAGAG+TGG | 0.557294 | 8.4:-50405538 | MS.gene38925:intron |
| CATGTTTGTATAATTTGTGT+CGG | 0.569763 | 8.4:+50405940 | None:intergenic |
| GTAGTAATGATGAATATTGT+GGG | 0.574573 | 8.4:-50405173 | MS.gene38925:CDS |
| CTATTGGGTTGAAGTTGAGA+AGG | 0.576004 | 8.4:+50406105 | None:intergenic |
| GGAGGAAATCGGTTATGAAA+GGG | 0.577225 | 8.4:+50405831 | None:intergenic |
| AATAGATTATGCAGAAACTG+TGG | 0.580193 | 8.4:-50405081 | MS.gene38925:CDS |
| TTATGCAGAAACTGTGGGGA+AGG | 0.589265 | 8.4:-50405075 | MS.gene38925:CDS |
| ATGTTTGTGTTCAATGTGTG+GGG | 0.595264 | 8.4:-50405016 | MS.gene38925:CDS |
| ACGGCGCAGGATAAGGATGA+AGG | 0.596413 | 8.4:-50405132 | MS.gene38925:CDS |
| TGAATATTGTGGGTGGCGTA+CGG | 0.612792 | 8.4:-50405163 | MS.gene38925:CDS |
| GTTATGAAAGGGTTGTTCGA+CGG | 0.613447 | 8.4:+50405842 | None:intergenic |
| ACGGTGGTTGTGCCTGAAAG+TGG | 0.615359 | 8.4:+50405893 | None:intergenic |
| TTGTTCGACGGAGATTGCGA+CGG | 0.619398 | 8.4:+50405854 | None:intergenic |
| TACGGTAGTAATGACGGCGC+AGG | 0.633033 | 8.4:-50405145 | MS.gene38925:CDS |
| TTCAGGCACAACCACCGTGT+CGG | 0.634510 | 8.4:-50405888 | MS.gene38925:CDS |
| AGAAATGAAGTTGTCGATGT+CGG | 0.644465 | 8.4:+50405658 | None:intergenic |
| GTGGCGTACGGTAGTAATGA+CGG | 0.665628 | 8.4:-50405151 | MS.gene38925:CDS |
| TGCGACGGTGAATATAGCGG+TGG | 0.671652 | 8.4:-50405246 | MS.gene38925:CDS |
| GGCTGCGACGGTGAATATAG+CGG | 0.693061 | 8.4:-50405249 | MS.gene38925:CDS |
| TAGATTATGCAGAAACTGTG+GGG | 0.699966 | 8.4:-50405079 | MS.gene38925:CDS |
| GTAATGATGAATATTGTGGG+TGG | 0.732674 | 8.4:-50405170 | MS.gene38925:CDS |
| GATGGTGTCTGGTTTCACGG+TGG | 0.784629 | 8.4:+50405796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAACAAAACAAAAAACA+TGG | + | chr8.4:50405058-50405077 | None:intergenic | 20.0% |
| !! | GAAAAAAATTTAGTAGAGTA+AGG | + | chr8.4:50405472-50405491 | None:intergenic | 20.0% |
| !! | GATTTAAAAGAATCACATAT+AGG | + | chr8.4:50406113-50406132 | None:intergenic | 20.0% |
| !!! | TGTTCATTCTTTCAATTTTT+TGG | + | chr8.4:50405668-50405687 | None:intergenic | 20.0% |
| ! | AAAAATCTTCACTGATGAAA+GGG | + | chr8.4:50405384-50405403 | None:intergenic | 25.0% |
| ! | AAATTTAGTAGAGTAAGGTA+AGG | + | chr8.4:50405467-50405486 | None:intergenic | 25.0% |
| ! | AAGATTGTACTATACCTATT+GGG | + | chr8.4:50404999-50405018 | None:intergenic | 25.0% |
| ! | ATATTCATCATTACTACAAC+AGG | + | chr8.4:50405910-50405929 | None:intergenic | 25.0% |
| ! | CAAAACAAAAAACATGGTTT+AGG | + | chr8.4:50405052-50405071 | None:intergenic | 25.0% |
| ! | GTAGTAATGATGAATATTGT+GGG | - | chr8.4:50405913-50405932 | MS.gene38925:CDS | 25.0% |
| ! | TGTAGTAATGATGAATATTG+TGG | - | chr8.4:50405912-50405931 | MS.gene38925:CDS | 25.0% |
| !! | CATGTTTGTATAATTTGTGT+CGG | + | chr8.4:50405149-50405168 | None:intergenic | 25.0% |
| !!! | TTGCATGTGTTTTTTTTAGA+CGG | - | chr8.4:50405533-50405552 | MS.gene38925:CDS | 25.0% |
| AAAAGTGAAAACACTATGCA+TGG | - | chr8.4:50405701-50405720 | MS.gene38925:CDS | 30.0% | |
| AATAGATTATGCAGAAACTG+TGG | - | chr8.4:50406005-50406024 | MS.gene38925:intron | 30.0% | |
| ACAAATCCTTATGCAACAAA+TGG | - | chr8.4:50405794-50405813 | MS.gene38925:CDS | 30.0% | |
| ATAGATTATGCAGAAACTGT+GGG | - | chr8.4:50406006-50406025 | MS.gene38925:intron | 30.0% | |
| GAAAAATCTTCACTGATGAA+AGG | + | chr8.4:50405385-50405404 | None:intergenic | 30.0% | |
| GAAAACAACAACAACAACAA+CGG | - | chr8.4:50405816-50405835 | MS.gene38925:CDS | 30.0% | |
| GAAGATTGTACTATACCTAT+TGG | + | chr8.4:50405000-50405019 | None:intergenic | 30.0% | |
| GAGAGAAACAATGATGATAA+TGG | - | chr8.4:50405590-50405609 | MS.gene38925:intron | 30.0% | |
| TATGTTTGTGTTCAATGTGT+GGG | - | chr8.4:50406069-50406088 | MS.gene38925:intron | 30.0% | |
| TTATGTTTGTGTTCAATGTG+TGG | - | chr8.4:50406068-50406087 | MS.gene38925:intron | 30.0% | |
| ! | AGGGTAGTTATTGTTATTGA+TGG | + | chr8.4:50405365-50405384 | None:intergenic | 30.0% |
| !! | TGTTTTCCATTTGTTGCATA+AGG | + | chr8.4:50405803-50405822 | None:intergenic | 30.0% |
| !!! | AATCTCTAGAACGTTTTTGT+GGG | + | chr8.4:50405342-50405361 | None:intergenic | 30.0% |
| AGAAATGAAGTTGTCGATGT+CGG | + | chr8.4:50405431-50405450 | None:intergenic | 35.0% | |
| ATGTTTGTGTTCAATGTGTG+GGG | - | chr8.4:50406070-50406089 | MS.gene38925:intron | 35.0% | |
| CACAAACATAAGTGTCTACA+AGG | + | chr8.4:50406059-50406078 | None:intergenic | 35.0% | |
| GTAATGATGAATATTGTGGG+TGG | - | chr8.4:50405916-50405935 | MS.gene38925:CDS | 35.0% | |
| GTTGAAGTTGAGAAGGAAAA+AGG | + | chr8.4:50404977-50404996 | None:intergenic | 35.0% | |
| TAGATTATGCAGAAACTGTG+GGG | - | chr8.4:50406007-50406026 | MS.gene38925:intron | 35.0% | |
| TATGCATGGAGAATCAAATC+TGG | - | chr8.4:50405715-50405734 | MS.gene38925:CDS | 35.0% | |
| !!! | GAATCTCTAGAACGTTTTTG+TGG | + | chr8.4:50405343-50405362 | None:intergenic | 35.0% |
| AACGTTGTTGTAAGCGAAGA+TGG | + | chr8.4:50405311-50405330 | None:intergenic | 40.0% | |
| CTTCTCAACTTCAACCCAAT+AGG | - | chr8.4:50404982-50405001 | MS.gene38925:CDS | 40.0% | |
| GAGAAGGAAAAAGGTTGAGA+TGG | + | chr8.4:50404968-50404987 | None:intergenic | 40.0% | |
| GGAGGAAATCGGTTATGAAA+GGG | + | chr8.4:50405258-50405277 | None:intergenic | 40.0% | |
| GTTATGAAAGGGTTGTTCGA+CGG | + | chr8.4:50405247-50405266 | None:intergenic | 40.0% | |
| TCATCACTGTTACCACTTTC+AGG | - | chr8.4:50405181-50405200 | MS.gene38925:CDS | 40.0% | |
| TTAGACGGAGAAGTTTAGAG+TGG | - | chr8.4:50405548-50405567 | MS.gene38925:intron | 40.0% | |
| ! | TGTCTTTTGACGGAGGAAAT+CGG | + | chr8.4:50405269-50405288 | None:intergenic | 40.0% |
| !! | AAGGATGAAGGTACTAGTAG+TGG | - | chr8.4:50405966-50405985 | MS.gene38925:CDS | 40.0% |
| !! | CTATTGGGTTGAAGTTGAGA+AGG | + | chr8.4:50404984-50405003 | None:intergenic | 40.0% |
| CGGAGGAAATCGGTTATGAA+AGG | + | chr8.4:50405259-50405278 | None:intergenic | 45.0% | |
| TGAATATTGTGGGTGGCGTA+CGG | - | chr8.4:50405923-50405942 | MS.gene38925:CDS | 45.0% | |
| TTATGCAGAAACTGTGGGGA+AGG | - | chr8.4:50406011-50406030 | MS.gene38925:intron | 45.0% | |
| TTGTAAGCGAAGATGGTGTC+TGG | + | chr8.4:50405304-50405323 | None:intergenic | 45.0% | |
| ! | AATGAGATTTTCCGACACGG+TGG | + | chr8.4:50405212-50405231 | None:intergenic | 45.0% |
| ! | CGGAATGAGATTTTCCGACA+CGG | + | chr8.4:50405215-50405234 | None:intergenic | 45.0% |
| ! | GAAGATGGTGTCTGGTTTCA+CGG | + | chr8.4:50405296-50405315 | None:intergenic | 45.0% |
| ! | TCACGGTGGATGTCTTTTGA+CGG | + | chr8.4:50405279-50405298 | None:intergenic | 45.0% |
| !! | TGTCGATGTCGGTGTTTTGA+CGG | + | chr8.4:50405420-50405439 | None:intergenic | 45.0% |
| AACAACAACAACGGCTGCGA+CGG | - | chr8.4:50405825-50405844 | MS.gene38925:CDS | 50.0% | |
| AGTAATGACGGCGCAGGATA+AGG | - | chr8.4:50405947-50405966 | MS.gene38925:CDS | 50.0% | |
| GTGGCGTACGGTAGTAATGA+CGG | - | chr8.4:50405935-50405954 | MS.gene38925:CDS | 50.0% | |
| GTGTTCAATGTGTGGGGCTA+TGG | - | chr8.4:50406076-50406095 | MS.gene38925:intron | 50.0% | |
| TTGTTCGACGGAGATTGCGA+CGG | + | chr8.4:50405235-50405254 | None:intergenic | 50.0% | |
| ! | TGGTGATTTTGCCGTTGCTG+CGG | - | chr8.4:50405860-50405879 | MS.gene38925:CDS | 50.0% |
| !! | GTTGAGATGGTGAGCATCGA+CGG | + | chr8.4:50404955-50404974 | None:intergenic | 50.0% |
| ACGGCGCAGGATAAGGATGA+AGG | - | chr8.4:50405954-50405973 | MS.gene38925:CDS | 55.0% | |
| ACGGTGGTTGTGCCTGAAAG+TGG | + | chr8.4:50405196-50405215 | None:intergenic | 55.0% | |
| GGCTGCGACGGTGAATATAG+CGG | - | chr8.4:50405837-50405856 | MS.gene38925:CDS | 55.0% | |
| TACGGTAGTAATGACGGCGC+AGG | - | chr8.4:50405941-50405960 | MS.gene38925:CDS | 55.0% | |
| TGCGACGGTGAATATAGCGG+TGG | - | chr8.4:50405840-50405859 | MS.gene38925:CDS | 55.0% | |
| TTCAGGCACAACCACCGTGT+CGG | - | chr8.4:50405198-50405217 | MS.gene38925:CDS | 55.0% | |
| ! | CGGTGGATGTCTTTTGACGG+AGG | + | chr8.4:50405276-50405295 | None:intergenic | 55.0% |
| ! | GATGGTGTCTGGTTTCACGG+TGG | + | chr8.4:50405293-50405312 | None:intergenic | 55.0% |
| ! | TGATTTTGCCGTTGCTGCGG+CGG | - | chr8.4:50405863-50405882 | MS.gene38925:CDS | 55.0% |
| !!! | CGATGTCGGTGTTTTGACGG+TGG | + | chr8.4:50405417-50405436 | None:intergenic | 55.0% |
| ! | TTTTGCCGTTGCTGCGGCGG+TGG | - | chr8.4:50405866-50405885 | MS.gene38925:CDS | 65.0% |
| CGCCTCCACCGCCGCAGCAA+CGG | + | chr8.4:50405874-50405893 | None:intergenic | 75.0% | |
| CGTTGCTGCGGCGGTGGAGG+CGG | - | chr8.4:50405872-50405891 | MS.gene38925:CDS | 75.0% | |
| TGCCGTTGCTGCGGCGGTGG+AGG | - | chr8.4:50405869-50405888 | MS.gene38925:CDS | 75.0% | |
| ! | TGCTGCGGCGGTGGAGGCGG+AGG | - | chr8.4:50405875-50405894 | MS.gene38925:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 50404948 | 50406160 | 50404948 | ID=MS.gene38925 |
| chr8.4 | mRNA | 50404948 | 50406160 | 50404948 | ID=MS.gene38925.t1;Parent=MS.gene38925 |
| chr8.4 | exon | 50406105 | 50406160 | 50406105 | ID=MS.gene38925.t1.exon1;Parent=MS.gene38925.t1 |
| chr8.4 | CDS | 50406105 | 50406160 | 50406105 | ID=cds.MS.gene38925.t1;Parent=MS.gene38925.t1 |
| chr8.4 | exon | 50405652 | 50405991 | 50405652 | ID=MS.gene38925.t1.exon2;Parent=MS.gene38925.t1 |
| chr8.4 | CDS | 50405652 | 50405991 | 50405652 | ID=cds.MS.gene38925.t1;Parent=MS.gene38925.t1 |
| chr8.4 | exon | 50404948 | 50405556 | 50404948 | ID=MS.gene38925.t1.exon3;Parent=MS.gene38925.t1 |
| chr8.4 | CDS | 50404948 | 50405556 | 50404948 | ID=cds.MS.gene38925.t1;Parent=MS.gene38925.t1 |
| Gene Sequence |
| Protein sequence |
