Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39085.t1 | XP_024625196.1 | 86.9 | 312 | 39 | 1 | 1 | 312 | 1 | 310 | 7.60E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39085.t1 | A0A396H3E2 | 86.9 | 312 | 39 | 1 | 1 | 312 | 1 | 310 | 5.5e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052954 | MS.gene39085 | 0.807909 | 4.02E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene39085 | 0.800535 | 1.38E-48 | -1.69E-46 |
| MS.gene053931 | MS.gene39085 | 0.820679 | 6.04E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene39085 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene39085 | 0.844653 | 6.62E-59 | -1.69E-46 |
| MS.gene057392 | MS.gene39085 | 0.809537 | 1.80E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene39085 | 0.832424 | 9.53E-56 | -1.69E-46 |
| MS.gene058008 | MS.gene39085 | 0.82248 | 2.32E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene39085 | 0.825545 | 4.42E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene39085 | 0.826082 | 3.30E-54 | -1.69E-46 |
| MS.gene058783 | MS.gene39085 | 0.854026 | 1.62E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene39085 | 0.815947 | 7.12E-52 | -1.69E-46 |
| MS.gene060244 | MS.gene39085 | 0.834631 | 2.68E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene39085 | 0.835456 | 1.66E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene39085 | 0.81653 | 5.27E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39085.t1 | MTR_7g090860 | 92.308 | 312 | 22 | 1 | 1 | 312 | 1 | 310 | 0.0 | 522 |
| MS.gene39085.t1 | MTR_7g090780 | 77.848 | 316 | 64 | 4 | 1 | 312 | 1 | 314 | 5.40e-156 | 439 |
| MS.gene39085.t1 | MTR_7g090800 | 67.722 | 316 | 89 | 7 | 1 | 312 | 1 | 307 | 2.87e-141 | 401 |
| MS.gene39085.t1 | MTR_7g090830 | 71.918 | 292 | 70 | 4 | 24 | 312 | 7 | 289 | 1.78e-137 | 390 |
| MS.gene39085.t1 | MTR_7g090820 | 63.548 | 310 | 87 | 7 | 1 | 310 | 1 | 284 | 1.20e-121 | 353 |
| MS.gene39085.t1 | MTR_7g090775 | 72.400 | 250 | 62 | 3 | 35 | 282 | 14 | 258 | 4.33e-119 | 343 |
| MS.gene39085.t1 | MTR_7g090780 | 76.587 | 252 | 54 | 3 | 65 | 312 | 1 | 251 | 7.81e-114 | 329 |
| MS.gene39085.t1 | MTR_1g051750 | 43.172 | 227 | 105 | 6 | 5 | 231 | 4 | 206 | 5.58e-52 | 171 |
| MS.gene39085.t1 | MTR_3g023510 | 31.780 | 236 | 126 | 6 | 26 | 247 | 24 | 238 | 9.31e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39085.t1 | AT5G03990 | 40.838 | 191 | 90 | 3 | 1 | 171 | 1 | 188 | 1.93e-40 | 143 |
| MS.gene39085.t1 | AT3G51940 | 39.286 | 112 | 67 | 1 | 26 | 136 | 20 | 131 | 7.87e-24 | 101 |
| MS.gene39085.t1 | AT3G51940 | 42.424 | 99 | 56 | 1 | 39 | 136 | 37 | 135 | 2.59e-23 | 99.8 |
| MS.gene39085.t1 | AT5G03990 | 48.352 | 91 | 44 | 1 | 65 | 155 | 1 | 88 | 2.03e-20 | 88.6 |
Find 94 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATTCTGAACTTTATT+TGG | 0.166699 | 7.4:+17958235 | MS.gene39085:CDS |
| CATCCCAGAGCAGCATAATT+TGG | 0.225014 | 7.4:-17958422 | None:intergenic |
| GAAATAGTGGGAGAGGAAAT+TGG | 0.249350 | 7.4:+17958612 | MS.gene39085:CDS |
| TCCTCTTCTGGTCTTGGATT+GGG | 0.249489 | 7.4:+17958347 | MS.gene39085:CDS |
| GAGGGGAAAATTTGCTTATA+AGG | 0.264683 | 7.4:+17958775 | MS.gene39085:CDS |
| AATCAGTCCTCTTCTGGTCT+TGG | 0.266278 | 7.4:+17958341 | MS.gene39085:CDS |
| TGATTCTGGAAATGGATAAT+TGG | 0.273700 | 7.4:+17956983 | None:intergenic |
| TGCATCCCAAAGTGGTAAAC+TGG | 0.283430 | 7.4:+17958081 | MS.gene39085:CDS |
| CTCTTGAATCAGTCCTCTTC+TGG | 0.284774 | 7.4:+17958335 | MS.gene39085:CDS |
| GGAGGAAGAGGAGGAGGTGG+GGG | 0.291481 | 7.4:+17958749 | MS.gene39085:CDS |
| AATGGAGGAAGAGGAGGAGG+TGG | 0.306932 | 7.4:+17958746 | MS.gene39085:CDS |
| TCGTCCCAGTTTACCACTTT+GGG | 0.328360 | 7.4:-17958086 | None:intergenic |
| AAAGAATATGGATGGCAAAA+TGG | 0.329913 | 7.4:+17958518 | MS.gene39085:CDS |
| AAATAGTGGGAGAGGAAATT+GGG | 0.332117 | 7.4:+17958613 | MS.gene39085:CDS |
| GAACATGCTGCAAAAGAATA+TGG | 0.344072 | 7.4:+17958506 | MS.gene39085:CDS |
| CGCCCCAACATAGAAGAAAA+AGG | 0.348181 | 7.4:+17958281 | MS.gene39085:CDS |
| GATGATGGTTACTGATCCTT+TGG | 0.349954 | 7.4:-17957014 | None:intergenic |
| GTCCTCTTCTGGTCTTGGAT+TGG | 0.351125 | 7.4:+17958346 | MS.gene39085:CDS |
| TGGAGGAAGAGGAGGAGGTG+GGG | 0.358688 | 7.4:+17958748 | MS.gene39085:CDS |
| GGATTGGGACCTACTGGATG+GGG | 0.378858 | 7.4:+17958362 | MS.gene39085:CDS |
| AATAGAGGAGGAAGAAGAAA+TGG | 0.384129 | 7.4:+17958728 | MS.gene39085:CDS |
| TATAACGGAAAACCACCTTT+AGG | 0.390153 | 7.4:+17957069 | MS.gene39085:CDS |
| TGAACCAAATTATGCTGCTC+TGG | 0.390673 | 7.4:+17958418 | MS.gene39085:CDS |
| ACATCATCTATGTAAATGTT+AGG | 0.394819 | 7.4:-17958197 | None:intergenic |
| GATTGGGACCTACTGGATGG+GGG | 0.403956 | 7.4:+17958363 | MS.gene39085:CDS |
| GGAGAGGAAATTGGGGAACA+TGG | 0.411161 | 7.4:+17958621 | MS.gene39085:CDS |
| ATGGAGGAAGAGGAGGAGGT+GGG | 0.413896 | 7.4:+17958747 | MS.gene39085:CDS |
| GGAAGAAGAAATGGAGGAAG+AGG | 0.415987 | 7.4:+17958737 | MS.gene39085:CDS |
| GGTCTTGGATTGGGACCTAC+TGG | 0.427547 | 7.4:+17958356 | MS.gene39085:CDS |
| AAATGGTCAGAATGATTCTC+AGG | 0.431182 | 7.4:+17958535 | MS.gene39085:CDS |
| GTCGTCCCAGTTTACCACTT+TGG | 0.436251 | 7.4:-17958087 | None:intergenic |
| TGGAATCAGAGGGAGCGATA+TGG | 0.436926 | 7.4:+17958560 | MS.gene39085:CDS |
| AAAATAATGAAACAAACTCT+TGG | 0.438543 | 7.4:+17958462 | MS.gene39085:CDS |
| GGTTTCCAACAGTGCCTTTG+TGG | 0.441064 | 7.4:+17957985 | MS.gene39085:CDS |
| TTGGATTGGGACCTACTGGA+TGG | 0.441158 | 7.4:+17958360 | MS.gene39085:CDS |
| AAGTATCAAGGAAGAAATAG+TGG | 0.441466 | 7.4:+17958599 | MS.gene39085:CDS |
| TGGATTGGGACCTACTGGAT+GGG | 0.442806 | 7.4:+17958361 | MS.gene39085:CDS |
| CTTCGGTGGGCTCAGTTCCA+TGG | 0.462514 | 7.4:+17958024 | MS.gene39085:CDS |
| AGAAATGGAGGAAGAGGAGG+AGG | 0.467887 | 7.4:+17958743 | MS.gene39085:CDS |
| CTGAGATCAACAACATTCCC+TGG | 0.470295 | 7.4:+17958156 | MS.gene39085:CDS |
| AAATAATGAAACAAACTCTT+GGG | 0.477297 | 7.4:+17958463 | MS.gene39085:CDS |
| TCTATGTAAATGTTAGGATC+AGG | 0.480083 | 7.4:-17958191 | None:intergenic |
| TTCTGAACTTTATTTGGATG+TGG | 0.480333 | 7.4:+17958241 | MS.gene39085:CDS |
| GGAAATTGGGGAACATGGGA+TGG | 0.480974 | 7.4:+17958626 | MS.gene39085:CDS |
| CAAATTATGCTGCTCTGGGA+TGG | 0.490209 | 7.4:+17958423 | MS.gene39085:CDS |
| AGAAAGAAAACAACATGTCT+TGG | 0.492809 | 7.4:+17958660 | MS.gene39085:CDS |
| AGAGGAGGAAGAAGAAATGG+AGG | 0.503196 | 7.4:+17958731 | MS.gene39085:CDS |
| GTTTCCAACAGTGCCTTTGT+GGG | 0.503784 | 7.4:+17957986 | MS.gene39085:CDS |
| CAAGGAAGAAATAGTGGGAG+AGG | 0.507156 | 7.4:+17958605 | MS.gene39085:CDS |
| ATTGGGACCTACTGGATGGG+GGG | 0.510955 | 7.4:+17958364 | MS.gene39085:CDS |
| ATCAGGCAATGGTATGTCCC+AGG | 0.512479 | 7.4:-17958174 | None:intergenic |
| AGAAGAAATGGAGGAAGAGG+AGG | 0.513878 | 7.4:+17958740 | MS.gene39085:CDS |
| GCAGCATAATTTGGTTCAGA+AGG | 0.514407 | 7.4:-17958413 | None:intergenic |
| AATGAGTATCAGATGAATAG+AGG | 0.514889 | 7.4:+17958713 | MS.gene39085:CDS |
| TCCTCCTTCTCATCCTATAA+CGG | 0.515407 | 7.4:+17957054 | MS.gene39085:CDS |
| CCATCATCAAGTGGGTCAGT+GGG | 0.517302 | 7.4:+17957029 | MS.gene39085:CDS |
| CCCACTGACCCACTTGATGA+TGG | 0.517715 | 7.4:-17957029 | None:intergenic |
| GGAGAGGCGGCTGTGACTCT+AGG | 0.522716 | 7.4:+17958302 | MS.gene39085:CDS |
| AAATTATGCTGCTCTGGGAT+GGG | 0.527002 | 7.4:+17958424 | MS.gene39085:CDS |
| GAGAGGAAATTGGGGAACAT+GGG | 0.531170 | 7.4:+17958622 | MS.gene39085:CDS |
| GTCAGAATGATTCTCAGGGA+TGG | 0.540162 | 7.4:+17958540 | MS.gene39085:CDS |
| GAACCAAATTATGCTGCTCT+GGG | 0.563912 | 7.4:+17958419 | MS.gene39085:CDS |
| GACTTGTATAACAAGTATCA+AGG | 0.564906 | 7.4:+17958587 | MS.gene39085:CDS |
| ACCATCATCAAGTGGGTCAG+TGG | 0.567874 | 7.4:+17957028 | MS.gene39085:CDS |
| ATCTTCATTTACCATGCACT+AGG | 0.571296 | 7.4:-17958806 | None:intergenic |
| TCTTCTATTAGCTTTCGCCA+TGG | 0.571899 | 7.4:-17958041 | None:intergenic |
| TCCCAATCCAAGACCAGAAG+AGG | 0.573717 | 7.4:-17958348 | None:intergenic |
| AAGAACCATGGATATCATCA+TGG | 0.588202 | 7.4:+17958686 | MS.gene39085:CDS |
| AATAGTGGGAGAGGAAATTG+GGG | 0.595211 | 7.4:+17958614 | MS.gene39085:CDS |
| ATGCTGCAAAAGAATATGGA+TGG | 0.597894 | 7.4:+17958510 | MS.gene39085:CDS |
| TAGTGCCATGATGATATCCA+TGG | 0.599866 | 7.4:-17958691 | None:intergenic |
| ATTCTCAGGGATGGAATCAG+AGG | 0.601746 | 7.4:+17958549 | MS.gene39085:CDS |
| GAGTATCAGATGAATAGAGG+AGG | 0.605987 | 7.4:+17958716 | MS.gene39085:CDS |
| GATCAGTAACCATCATCAAG+TGG | 0.608162 | 7.4:+17957020 | MS.gene39085:CDS |
| GCATCCCAAAGTGGTAAACT+GGG | 0.611168 | 7.4:+17958082 | MS.gene39085:CDS |
| ATCAGTAACCATCATCAAGT+GGG | 0.619741 | 7.4:+17957021 | MS.gene39085:CDS |
| GAAAGCTAATAGAAGACAAG+AGG | 0.621891 | 7.4:+17958048 | MS.gene39085:CDS |
| AGTATCAAGGAAGAAATAGT+GGG | 0.622344 | 7.4:+17958600 | MS.gene39085:CDS |
| GGACGACTCTGCTGTCAAAG+AGG | 0.623703 | 7.4:+17958103 | MS.gene39085:CDS |
| GGATGTGGAAATAGAAGCAG+AGG | 0.625331 | 7.4:+17958256 | MS.gene39085:CDS |
| TGAGATCAACAACATTCCCT+GGG | 0.626226 | 7.4:+17958157 | MS.gene39085:CDS |
| TCCGTTATAGGATGAGAAGG+AGG | 0.628511 | 7.4:-17957055 | None:intergenic |
| AATGGTCAGAATGATTCTCA+GGG | 0.628914 | 7.4:+17958536 | MS.gene39085:CDS |
| ATGTCTTGGTCTAAGAACCA+TGG | 0.637891 | 7.4:+17958674 | MS.gene39085:CDS |
| CAGAAGAGGACTGATTCAAG+AGG | 0.638374 | 7.4:-17958334 | None:intergenic |
| AATCAGAGGGAGCGATATGG+TGG | 0.639116 | 7.4:+17958563 | MS.gene39085:CDS |
| TTCTCAGGGATGGAATCAGA+GGG | 0.642433 | 7.4:+17958550 | MS.gene39085:CDS |
| CATGTATATGCATCCCAAAG+TGG | 0.643906 | 7.4:+17958073 | MS.gene39085:CDS |
| TCAGGCAATGGTATGTCCCA+GGG | 0.651273 | 7.4:-17958173 | None:intergenic |
| AGGTTGCTACTCCTAGTGCA+TGG | 0.652070 | 7.4:+17958795 | MS.gene39085:CDS |
| ATAATTGGAGAAGAAACCAA+AGG | 0.669189 | 7.4:+17956998 | MS.gene39085:CDS |
| CATCATCAAGTGGGTCAGTG+GGG | 0.675320 | 7.4:+17957030 | MS.gene39085:CDS |
| TAAATGTTAGGATCAGGCAA+TGG | 0.686387 | 7.4:-17958185 | None:intergenic |
| AGAATGAACGAACCTAAAGG+TGG | 0.691864 | 7.4:-17957081 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTCTATTTATTCTTT+TGG | + | chr7.4:17957949-17957968 | MS.gene39085:intron | 15.0% |
| !!! | GTTTTATGGTTTTAAAAATT+GGG | + | chr7.4:17957334-17957353 | MS.gene39085:intron | 15.0% |
| !!! | TTTTATGGTTTTAAAAATTG+GGG | + | chr7.4:17957335-17957354 | MS.gene39085:intron | 15.0% |
| !! | AAAATAATGAAACAAACTCT+TGG | + | chr7.4:17958462-17958481 | MS.gene39085:CDS | 20.0% |
| !! | AAATAATGAAACAAACTCTT+GGG | + | chr7.4:17958463-17958482 | MS.gene39085:CDS | 20.0% |
| !! | AATAAGCAATTTAATGACAT+AGG | - | chr7.4:17957533-17957552 | None:intergenic | 20.0% |
| !! | ATAAGCAATTTAATGACATA+GGG | - | chr7.4:17957532-17957551 | None:intergenic | 20.0% |
| !! | TGCAACAAAACAAATTTAAA+AGG | - | chr7.4:17957161-17957180 | None:intergenic | 20.0% |
| !!! | AGAATCAATTGATAGTTTAA+GGG | - | chr7.4:17957938-17957957 | None:intergenic | 20.0% |
| !!! | GGTTTTATGGTTTTAAAAAT+TGG | + | chr7.4:17957333-17957352 | MS.gene39085:intron | 20.0% |
| !!! | TAGAATCAATTGATAGTTTA+AGG | - | chr7.4:17957939-17957958 | None:intergenic | 20.0% |
| !!! | TTGTTTCATTATTTTCATGT+TGG | - | chr7.4:17958457-17958476 | None:intergenic | 20.0% |
| ! | AATAAACATCTCCTTAAACA+TGG | - | chr7.4:17957643-17957662 | None:intergenic | 25.0% |
| ! | AATATCTAGAAATCATCTCT+TGG | + | chr7.4:17957487-17957506 | MS.gene39085:intron | 25.0% |
| ! | ACATCATCTATGTAAATGTT+AGG | - | chr7.4:17958200-17958219 | None:intergenic | 25.0% |
| ! | ACATTCTTCTTTATACTAAC+TGG | + | chr7.4:17957761-17957780 | MS.gene39085:intron | 25.0% |
| ! | ATGTTTAAGGAGATGTTTAT+TGG | + | chr7.4:17957642-17957661 | MS.gene39085:intron | 25.0% |
| !! | ATCTGAAAATGTCTTGATTT+TGG | + | chr7.4:17957617-17957636 | MS.gene39085:intron | 25.0% |
| !!! | ACATGAATCTGTTTTGATTA+TGG | + | chr7.4:17957585-17957604 | MS.gene39085:intron | 25.0% |
| !!! | TGATCACTTTACTTTTGAAT+TGG | + | chr7.4:17957301-17957320 | MS.gene39085:intron | 25.0% |
| !!! | TGTTGATTCTGAACTTTATT+TGG | + | chr7.4:17958235-17958254 | MS.gene39085:CDS | 25.0% |
| AAAGAATATGGATGGCAAAA+TGG | + | chr7.4:17958518-17958537 | MS.gene39085:CDS | 30.0% | |
| AAGTAAAGTGATCACAATCA+AGG | - | chr7.4:17957295-17957314 | None:intergenic | 30.0% | |
| AAGTATCAAGGAAGAAATAG+TGG | + | chr7.4:17958599-17958618 | MS.gene39085:CDS | 30.0% | |
| AATGAGTATCAGATGAATAG+AGG | + | chr7.4:17958713-17958732 | MS.gene39085:CDS | 30.0% | |
| ACAATGCAAAAAACAGGTAT+TGG | + | chr7.4:17958132-17958151 | MS.gene39085:CDS | 30.0% | |
| AGAAAGAAAACAACATGTCT+TGG | + | chr7.4:17958660-17958679 | MS.gene39085:CDS | 30.0% | |
| AGTATCAAGGAAGAAATAGT+GGG | + | chr7.4:17958600-17958619 | MS.gene39085:CDS | 30.0% | |
| ATAATTGGAGAAGAAACCAA+AGG | + | chr7.4:17956998-17957017 | MS.gene39085:CDS | 30.0% | |
| CAATGCAAAAAACAGGTATT+GGG | + | chr7.4:17958133-17958152 | MS.gene39085:CDS | 30.0% | |
| CATGTGATTATAACATAACG+TGG | - | chr7.4:17957879-17957898 | None:intergenic | 30.0% | |
| GACTTGTATAACAAGTATCA+AGG | + | chr7.4:17958587-17958606 | MS.gene39085:CDS | 30.0% | |
| TAGTTATCTATCAACCCTTA+TGG | - | chr7.4:17957366-17957385 | None:intergenic | 30.0% | |
| TATTACAGAACATAATCAGC+AGG | - | chr7.4:17957411-17957430 | None:intergenic | 30.0% | |
| TCTATGTAAATGTTAGGATC+AGG | - | chr7.4:17958194-17958213 | None:intergenic | 30.0% | |
| TGTTGCATAGTTGAAAAAGT+CGG | + | chr7.4:17957174-17957193 | MS.gene39085:intron | 30.0% | |
| TTCATTGAATAGCCAAATCT+AGG | - | chr7.4:17957812-17957831 | None:intergenic | 30.0% | |
| ! | AAAATTGGGGTTTTTCCATA+AGG | + | chr7.4:17957348-17957367 | MS.gene39085:intron | 30.0% |
| ! | AAATTGGGGTTTTTCCATAA+GGG | + | chr7.4:17957349-17957368 | MS.gene39085:intron | 30.0% |
| ! | TCTCCTTTTTCTTCTATGTT+GGG | - | chr7.4:17958287-17958306 | None:intergenic | 30.0% |
| ! | TTCATTCTTCAGTTTTTGCA+TGG | + | chr7.4:17957096-17957115 | MS.gene39085:intron | 30.0% |
| ! | TTCTGAACTTTATTTGGATG+TGG | + | chr7.4:17958241-17958260 | MS.gene39085:CDS | 30.0% |
| !! | ACTTTTGAATTGGTTCAGTT+GGG | + | chr7.4:17957311-17957330 | MS.gene39085:intron | 30.0% |
| !! | TACTTTTGAATTGGTTCAGT+TGG | + | chr7.4:17957310-17957329 | MS.gene39085:intron | 30.0% |
| !!! | TCTTTTGGTTCACAGATAAT+AGG | + | chr7.4:17957964-17957983 | MS.gene39085:intron | 30.0% |
| AAACTAAAGCTGCCTAGATT+TGG | + | chr7.4:17957797-17957816 | MS.gene39085:intron | 35.0% | |
| AAATGGTCAGAATGATTCTC+AGG | + | chr7.4:17958535-17958554 | MS.gene39085:CDS | 35.0% | |
| AACTATGTTTCAGTTTGCGT+TGG | + | chr7.4:17957381-17957400 | MS.gene39085:intron | 35.0% | |
| AAGAACCATGGATATCATCA+TGG | + | chr7.4:17958686-17958705 | MS.gene39085:CDS | 35.0% | |
| AAGTCGGTGAATGTTAGAAT+TGG | + | chr7.4:17957190-17957209 | MS.gene39085:intron | 35.0% | |
| AATAGAGGAGGAAGAAGAAA+TGG | + | chr7.4:17958728-17958747 | MS.gene39085:CDS | 35.0% | |
| AATGGTCAGAATGATTCTCA+GGG | + | chr7.4:17958536-17958555 | MS.gene39085:CDS | 35.0% | |
| AGAATGTAGTTGAAGTAAGC+AGG | - | chr7.4:17957748-17957767 | None:intergenic | 35.0% | |
| ATCAGTAACCATCATCAAGT+GGG | + | chr7.4:17957021-17957040 | MS.gene39085:CDS | 35.0% | |
| ATGCTGCAAAAGAATATGGA+TGG | + | chr7.4:17958510-17958529 | MS.gene39085:CDS | 35.0% | |
| CAACATAGAAGAAAAAGGAG+AGG | + | chr7.4:17958286-17958305 | MS.gene39085:CDS | 35.0% | |
| CATTCGACAATGCAAAAAAC+AGG | + | chr7.4:17958126-17958145 | MS.gene39085:CDS | 35.0% | |
| GAAAGCTAATAGAAGACAAG+AGG | + | chr7.4:17958048-17958067 | MS.gene39085:CDS | 35.0% | |
| GAACATGCTGCAAAAGAATA+TGG | + | chr7.4:17958506-17958525 | MS.gene39085:CDS | 35.0% | |
| TAAATGTTAGGATCAGGCAA+TGG | - | chr7.4:17958188-17958207 | None:intergenic | 35.0% | |
| TGAAGAATGAACGAACCTAA+AGG | - | chr7.4:17957087-17957106 | None:intergenic | 35.0% | |
| TGATTATAACATAACGTGGC+TGG | - | chr7.4:17957875-17957894 | None:intergenic | 35.0% | |
| ! | AAATAGTGGGAGAGGAAATT+GGG | + | chr7.4:17958613-17958632 | MS.gene39085:CDS | 35.0% |
| ! | CTCCTTTTTCTTCTATGTTG+GGG | - | chr7.4:17958286-17958305 | None:intergenic | 35.0% |
| ! | CTCTCCTTTTTCTTCTATGT+TGG | - | chr7.4:17958288-17958307 | None:intergenic | 35.0% |
| ! | GAGGGGAAAATTTGCTTATA+AGG | + | chr7.4:17958775-17958794 | MS.gene39085:CDS | 35.0% |
| ! | TAAAGGTGGTTTTCCGTTAT+AGG | - | chr7.4:17957070-17957089 | None:intergenic | 35.0% |
| ! | TATAACGGAAAACCACCTTT+AGG | + | chr7.4:17957069-17957088 | MS.gene39085:CDS | 35.0% |
| ! | TTCTTTTGCAGCATGTTCAA+CGG | - | chr7.4:17958504-17958523 | None:intergenic | 35.0% |
| ! | TTTTCCGTTATAGGATGAGA+AGG | - | chr7.4:17957061-17957080 | None:intergenic | 35.0% |
| !! | CTTGATTTTGGCCATGTTTA+AGG | + | chr7.4:17957629-17957648 | MS.gene39085:intron | 35.0% |
| !! | CTTTTGAATTGGTTCAGTTG+GGG | + | chr7.4:17957312-17957331 | MS.gene39085:intron | 35.0% |
| AGAATGAACGAACCTAAAGG+TGG | - | chr7.4:17957084-17957103 | None:intergenic | 40.0% | |
| ATGTCTTGGTCTAAGAACCA+TGG | + | chr7.4:17958674-17958693 | MS.gene39085:CDS | 40.0% | |
| CATAGAAGAAAAAGGAGAGG+CGG | + | chr7.4:17958289-17958308 | MS.gene39085:CDS | 40.0% | |
| CATGTATATGCATCCCAAAG+TGG | + | chr7.4:17958073-17958092 | MS.gene39085:CDS | 40.0% | |
| CGACAAACATCATCATCATC+AGG | - | chr7.4:17957684-17957703 | None:intergenic | 40.0% | |
| GAACCAAATTATGCTGCTCT+GGG | + | chr7.4:17958419-17958438 | MS.gene39085:CDS | 40.0% | |
| GAATAATTGCTGTCACATGC+AGG | + | chr7.4:17957233-17957252 | MS.gene39085:intron | 40.0% | |
| GAGTATCAGATGAATAGAGG+AGG | + | chr7.4:17958716-17958735 | MS.gene39085:CDS | 40.0% | |
| GATCAGTAACCATCATCAAG+TGG | + | chr7.4:17957020-17957039 | MS.gene39085:CDS | 40.0% | |
| TAGTGCCATGATGATATCCA+TGG | - | chr7.4:17958694-17958713 | None:intergenic | 40.0% | |
| TCCTCCTTCTCATCCTATAA+CGG | + | chr7.4:17957054-17957073 | MS.gene39085:CDS | 40.0% | |
| TGAACCAAATTATGCTGCTC+TGG | + | chr7.4:17958418-17958437 | MS.gene39085:CDS | 40.0% | |
| TGAGATCAACAACATTCCCT+GGG | + | chr7.4:17958157-17958176 | MS.gene39085:CDS | 40.0% | |
| ! | AATAGTGGGAGAGGAAATTG+GGG | + | chr7.4:17958614-17958633 | MS.gene39085:CDS | 40.0% |
| ! | CTTTTTCTTCTATGTTGGGG+CGG | - | chr7.4:17958283-17958302 | None:intergenic | 40.0% |
| ! | GAAATAGTGGGAGAGGAAAT+TGG | + | chr7.4:17958612-17958631 | MS.gene39085:CDS | 40.0% |
| ! | GATGATGGTTACTGATCCTT+TGG | - | chr7.4:17957017-17957036 | None:intergenic | 40.0% |
| ! | GCAGCATAATTTGGTTCAGA+AGG | - | chr7.4:17958416-17958435 | None:intergenic | 40.0% |
| ! | TCTTTTGCAGCATGTTCAAC+GGG | - | chr7.4:17958503-17958522 | None:intergenic | 40.0% |
| ! | TGCTTTGAATTCATGTGGTG+CGG | + | chr7.4:17957447-17957466 | MS.gene39085:intron | 40.0% |
| ! | TGTCGTGCTTTGAATTCATG+TGG | + | chr7.4:17957442-17957461 | MS.gene39085:intron | 40.0% |
| ! | TTGGTTCAGTTGGGGTTTTA+TGG | + | chr7.4:17957320-17957339 | MS.gene39085:intron | 40.0% |
| ! | TTTTTCTTCTATGTTGGGGC+GGG | - | chr7.4:17958282-17958301 | None:intergenic | 40.0% |
| !! | AAATTATGCTGCTCTGGGAT+GGG | + | chr7.4:17958424-17958443 | MS.gene39085:CDS | 40.0% |
| !! | CAAAACTGCTTTTCCCACAA+AGG | - | chr7.4:17958002-17958021 | None:intergenic | 40.0% |
| !! | GGAAAAGCAGTTTTGTGCTT+CGG | + | chr7.4:17958007-17958026 | MS.gene39085:CDS | 40.0% |
| !! | TCTTCTATTAGCTTTCGCCA+TGG | - | chr7.4:17958044-17958063 | None:intergenic | 40.0% |
| AATCAGTCCTCTTCTGGTCT+TGG | + | chr7.4:17958341-17958360 | MS.gene39085:CDS | 45.0% | |
| AGAAGAAATGGAGGAAGAGG+AGG | + | chr7.4:17958740-17958759 | MS.gene39085:CDS | 45.0% | |
| AGAGGAGGAAGAAGAAATGG+AGG | + | chr7.4:17958731-17958750 | MS.gene39085:CDS | 45.0% | |
| ATTCTCAGGGATGGAATCAG+AGG | + | chr7.4:17958549-17958568 | MS.gene39085:CDS | 45.0% | |
| CATCCCAGAGCAGCATAATT+TGG | - | chr7.4:17958425-17958444 | None:intergenic | 45.0% | |
| CGCCCCAACATAGAAGAAAA+AGG | + | chr7.4:17958281-17958300 | MS.gene39085:CDS | 45.0% | |
| CTCTTGAATCAGTCCTCTTC+TGG | + | chr7.4:17958335-17958354 | MS.gene39085:CDS | 45.0% | |
| CTGAGATCAACAACATTCCC+TGG | + | chr7.4:17958156-17958175 | MS.gene39085:CDS | 45.0% | |
| GAGAGGAAATTGGGGAACAT+GGG | + | chr7.4:17958622-17958641 | MS.gene39085:CDS | 45.0% | |
| GCATCCCAAAGTGGTAAACT+GGG | + | chr7.4:17958082-17958101 | MS.gene39085:CDS | 45.0% | |
| GGAAGAAGAAATGGAGGAAG+AGG | + | chr7.4:17958737-17958756 | MS.gene39085:CDS | 45.0% | |
| GGATGTGGAAATAGAAGCAG+AGG | + | chr7.4:17958256-17958275 | MS.gene39085:CDS | 45.0% | |
| GTCAGAATGATTCTCAGGGA+TGG | + | chr7.4:17958540-17958559 | MS.gene39085:CDS | 45.0% | |
| GTTTCCAACAGTGCCTTTGT+GGG | + | chr7.4:17957986-17958005 | MS.gene39085:CDS | 45.0% | |
| TCCGTTATAGGATGAGAAGG+AGG | - | chr7.4:17957058-17957077 | None:intergenic | 45.0% | |
| TCGTCCCAGTTTACCACTTT+GGG | - | chr7.4:17958089-17958108 | None:intergenic | 45.0% | |
| TGCATCCCAAAGTGGTAAAC+TGG | + | chr7.4:17958081-17958100 | MS.gene39085:CDS | 45.0% | |
| TTCTCAGGGATGGAATCAGA+GGG | + | chr7.4:17958550-17958569 | MS.gene39085:CDS | 45.0% | |
| ! | CAAGGAAGAAATAGTGGGAG+AGG | + | chr7.4:17958605-17958624 | MS.gene39085:CDS | 45.0% |
| ! | CAGAAGAGGACTGATTCAAG+AGG | - | chr7.4:17958337-17958356 | None:intergenic | 45.0% |
| !! | AAAGCAGTTTTGTGCTTCGG+TGG | + | chr7.4:17958010-17958029 | MS.gene39085:CDS | 45.0% |
| !! | AAGCAGTTTTGTGCTTCGGT+GGG | + | chr7.4:17958011-17958030 | MS.gene39085:CDS | 45.0% |
| !! | CAAATTATGCTGCTCTGGGA+TGG | + | chr7.4:17958423-17958442 | MS.gene39085:CDS | 45.0% |
| !! | TCCTCTTCTGGTCTTGGATT+GGG | + | chr7.4:17958347-17958366 | MS.gene39085:CDS | 45.0% |
| !!! | TTTTCCCACAAAGGCACTGT+TGG | - | chr7.4:17957993-17958012 | None:intergenic | 45.0% |
| AATCAGAGGGAGCGATATGG+TGG | + | chr7.4:17958563-17958582 | MS.gene39085:CDS | 50.0% | |
| ACCATCATCAAGTGGGTCAG+TGG | + | chr7.4:17957028-17957047 | MS.gene39085:CDS | 50.0% | |
| AGAAATGGAGGAAGAGGAGG+AGG | + | chr7.4:17958743-17958762 | MS.gene39085:CDS | 50.0% | |
| AGGTTGCTACTCCTAGTGCA+TGG | + | chr7.4:17958795-17958814 | MS.gene39085:CDS | 50.0% | |
| ATCAGGCAATGGTATGTCCC+AGG | - | chr7.4:17958177-17958196 | None:intergenic | 50.0% | |
| CATCATCAAGTGGGTCAGTG+GGG | + | chr7.4:17957030-17957049 | MS.gene39085:CDS | 50.0% | |
| CCATCATCAAGTGGGTCAGT+GGG | + | chr7.4:17957029-17957048 | MS.gene39085:CDS | 50.0% | |
| GGAAATTGGGGAACATGGGA+TGG | + | chr7.4:17958626-17958645 | MS.gene39085:CDS | 50.0% | |
| GGAGAGGAAATTGGGGAACA+TGG | + | chr7.4:17958621-17958640 | MS.gene39085:CDS | 50.0% | |
| GGTTTCCAACAGTGCCTTTG+TGG | + | chr7.4:17957985-17958004 | MS.gene39085:CDS | 50.0% | |
| GTCGTCCCAGTTTACCACTT+TGG | - | chr7.4:17958090-17958109 | None:intergenic | 50.0% | |
| TCAGGCAATGGTATGTCCCA+GGG | - | chr7.4:17958176-17958195 | None:intergenic | 50.0% | |
| TCCCAATCCAAGACCAGAAG+AGG | - | chr7.4:17958351-17958370 | None:intergenic | 50.0% | |
| TGGAATCAGAGGGAGCGATA+TGG | + | chr7.4:17958560-17958579 | MS.gene39085:CDS | 50.0% | |
| ! | TGCTGTCACATGCAGGTTGA+CGG | + | chr7.4:17957240-17957259 | MS.gene39085:intron | 50.0% |
| ! | TGGATTGGGACCTACTGGAT+GGG | + | chr7.4:17958361-17958380 | MS.gene39085:CDS | 50.0% |
| ! | TTGGATTGGGACCTACTGGA+TGG | + | chr7.4:17958360-17958379 | MS.gene39085:CDS | 50.0% |
| !! | GTCCTCTTCTGGTCTTGGAT+TGG | + | chr7.4:17958346-17958365 | MS.gene39085:CDS | 50.0% |
| AATGGAGGAAGAGGAGGAGG+TGG | + | chr7.4:17958746-17958765 | MS.gene39085:CDS | 55.0% | |
| ATGGAGGAAGAGGAGGAGGT+GGG | + | chr7.4:17958747-17958766 | MS.gene39085:CDS | 55.0% | |
| ATTGGGACCTACTGGATGGG+GGG | + | chr7.4:17958364-17958383 | MS.gene39085:CDS | 55.0% | |
| CCCACTGACCCACTTGATGA+TGG | - | chr7.4:17957032-17957051 | None:intergenic | 55.0% | |
| GATTGGGACCTACTGGATGG+GGG | + | chr7.4:17958363-17958382 | MS.gene39085:CDS | 55.0% | |
| GGACGACTCTGCTGTCAAAG+AGG | + | chr7.4:17958103-17958122 | MS.gene39085:CDS | 55.0% | |
| GGATTGGGACCTACTGGATG+GGG | + | chr7.4:17958362-17958381 | MS.gene39085:CDS | 55.0% | |
| ! | GGTCTTGGATTGGGACCTAC+TGG | + | chr7.4:17958356-17958375 | MS.gene39085:CDS | 55.0% |
| GACGGAGCACAGTTGTGCTG+TGG | + | chr7.4:17957258-17957277 | MS.gene39085:intron | 60.0% | |
| TCTTCGTCCCCCCATCCAGT+AGG | - | chr7.4:17958374-17958393 | None:intergenic | 60.0% | |
| TGGAGGAAGAGGAGGAGGTG+GGG | + | chr7.4:17958748-17958767 | MS.gene39085:CDS | 60.0% | |
| ! | CTTCGGTGGGCTCAGTTCCA+TGG | + | chr7.4:17958024-17958043 | MS.gene39085:CDS | 60.0% |
| AGGAGGAGGTGGGGGAAGGA+GGG | + | chr7.4:17958757-17958776 | MS.gene39085:CDS | 65.0% | |
| GAAGAGGAGGAGGTGGGGGA+AGG | + | chr7.4:17958753-17958772 | MS.gene39085:CDS | 65.0% | |
| GGAGAGGCGGCTGTGACTCT+AGG | + | chr7.4:17958302-17958321 | MS.gene39085:CDS | 65.0% | |
| GGAGGAAGAGGAGGAGGTGG+GGG | + | chr7.4:17958749-17958768 | MS.gene39085:CDS | 65.0% | |
| GAGGAGGAGGTGGGGGAAGG+AGG | + | chr7.4:17958756-17958775 | MS.gene39085:CDS | 70.0% | |
| GGAGGAGGTGGGGGAAGGAG+GGG | + | chr7.4:17958758-17958777 | MS.gene39085:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 17956994 | 17958820 | 17956994 | ID=MS.gene39085 |
| chr7.4 | mRNA | 17956994 | 17958820 | 17956994 | ID=MS.gene39085.t1;Parent=MS.gene39085 |
| chr7.4 | exon | 17956994 | 17957090 | 17956994 | ID=MS.gene39085.t1.exon1;Parent=MS.gene39085.t1 |
| chr7.4 | CDS | 17956994 | 17957090 | 17956994 | ID=cds.MS.gene39085.t1;Parent=MS.gene39085.t1 |
| chr7.4 | exon | 17957979 | 17958820 | 17957979 | ID=MS.gene39085.t1.exon2;Parent=MS.gene39085.t1 |
| chr7.4 | CDS | 17957979 | 17958820 | 17957979 | ID=cds.MS.gene39085.t1;Parent=MS.gene39085.t1 |
| Gene Sequence |
| Protein sequence |
