Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39699.t1 | XP_003626764.1 | 98.3 | 235 | 4 | 0 | 1 | 235 | 14 | 248 | 9.30E-130 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39699.t1 | Q9LTC0 | 61.6 | 232 | 80 | 3 | 3 | 233 | 31 | 254 | 9.0e-73 | 275.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39699.t1 | G7LCI9 | 98.3 | 235 | 4 | 0 | 1 | 235 | 14 | 248 | 6.7e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049182 | MS.gene39699 | 0.80536 | 1.39E-49 | -1.69E-46 |
| MS.gene050379 | MS.gene39699 | 0.829123 | 6.14E-55 | -1.69E-46 |
| MS.gene051959 | MS.gene39699 | 0.814667 | 1.37E-51 | -1.69E-46 |
| MS.gene051960 | MS.gene39699 | 0.824382 | 8.32E-54 | -1.69E-46 |
| MS.gene052053 | MS.gene39699 | 0.806267 | 8.94E-50 | -1.69E-46 |
| MS.gene057148 | MS.gene39699 | -0.800868 | 1.18E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene39699 | -0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene39699 | 0.806726 | 7.15E-50 | -1.69E-46 |
| MS.gene060906 | MS.gene39699 | 0.803232 | 3.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACCTTGTCAAGCTTAT+TGG | 0.094030 | 8.3:-80096681 | MS.gene39699:CDS |
| AAGCCAAAACTTTCTGATTT+TGG | 0.116071 | 8.3:-80095807 | MS.gene39699:CDS |
| CCCTTCTCCTCATAAAGTTT+TGG | 0.270204 | 8.3:+80097869 | None:intergenic |
| TTAACTGAAGTTCAGTTTCT+TGG | 0.280994 | 8.3:-80096717 | MS.gene39699:CDS |
| GGATTTGGAAGTGTGTTTAA+AGG | 0.300617 | 8.3:-80097764 | MS.gene39699:CDS |
| GCTAGGGAGGGACCGGAAGC+TGG | 0.307118 | 8.3:-80095780 | MS.gene39699:CDS |
| ATTCGTACACAAGTAATCTT+TGG | 0.325653 | 8.3:+80096628 | None:intergenic |
| AGTCCAAAATCAGAAAGTTT+TGG | 0.329045 | 8.3:+80095804 | None:intergenic |
| CCAATAAGCTTGACAAGGTT+TGG | 0.331239 | 8.3:+80096681 | None:intergenic |
| AAGATAGGAGAAGGTGGATT+TGG | 0.344267 | 8.3:-80097779 | MS.gene39699:CDS |
| CTTCAGTTAACCACTGCTTA+TGG | 0.349718 | 8.3:+80096730 | None:intergenic |
| AACATTTGCAAGATTCTTGT+TGG | 0.356776 | 8.3:-80094904 | MS.gene39699:intron |
| TAAATGTTCAAATGTCTTGC+TGG | 0.362673 | 8.3:-80095841 | MS.gene39699:CDS |
| TTCAATAGGCTTCTTAAGAT+AGG | 0.364787 | 8.3:-80097794 | MS.gene39699:CDS |
| TGAGCTTCTAAGCTTCGATT+TGG | 0.377411 | 8.3:+80096600 | None:intergenic |
| TTCTCTTGCTCTTCTAGCTC+AGG | 0.379718 | 8.3:+80097962 | None:intergenic |
| GTGCAACAAGTGATTTCAAT+AGG | 0.381630 | 8.3:-80097808 | MS.gene39699:CDS |
| GCTTAACAAGGATGCATTGC+AGG | 0.387031 | 8.3:-80097687 | MS.gene39699:intron |
| CAGCTAATGTGCAATAAAGT+TGG | 0.397826 | 8.3:+80094824 | None:intergenic |
| ATTAAACCTGTTGGTGGAAA+TGG | 0.411786 | 8.3:-80097737 | MS.gene39699:CDS |
| TTCATCTACCTCTTCACCTA+GGG | 0.423335 | 8.3:-80097897 | MS.gene39699:CDS |
| CTAGGGAGGGACCGGAAGCT+GGG | 0.424957 | 8.3:-80095779 | MS.gene39699:CDS |
| ATTGGATACTGTGCTGTAGA+TGG | 0.428794 | 8.3:-80096663 | MS.gene39699:CDS |
| GGATCACCATTTCCACCAAC+AGG | 0.429307 | 8.3:+80097731 | None:intergenic |
| ACATGGGTATCCCCAGCTTC+CGG | 0.441365 | 8.3:+80095768 | None:intergenic |
| AATCTTATGATCCTGTTCCT+TGG | 0.443398 | 8.3:-80096566 | MS.gene39699:CDS |
| CTATCTTAGTTGCCATCAAA+AGG | 0.459344 | 8.3:-80097709 | MS.gene39699:CDS |
| AGGAGAAGGGTCATAATTTG+AGG | 0.459825 | 8.3:-80097856 | MS.gene39699:CDS |
| CACTTACAGCAGTTGAAACA+TGG | 0.481942 | 8.3:+80095751 | None:intergenic |
| GTTCATCTACCTCTTCACCT+AGG | 0.495832 | 8.3:-80097898 | MS.gene39699:CDS |
| AGTTCAGTTTCTTGGTGTTG+TGG | 0.506855 | 8.3:-80096709 | MS.gene39699:CDS |
| ACCAAAACTTTATGAGGAGA+AGG | 0.512522 | 8.3:-80097870 | MS.gene39699:CDS |
| GGAGAAGGGTCATAATTTGA+GGG | 0.515091 | 8.3:-80097855 | MS.gene39699:CDS |
| TGGACTCGCTAGGGAGGGAC+CGG | 0.517149 | 8.3:-80095787 | MS.gene39699:CDS |
| GGTTCGATTAAACCTGTTGG+TGG | 0.520335 | 8.3:-80097743 | MS.gene39699:CDS |
| GGGTATACCAAAACTTTATG+AGG | 0.527439 | 8.3:-80097876 | MS.gene39699:CDS |
| GCATGAAGAATTAGAAGTCC+AGG | 0.532299 | 8.3:-80096493 | MS.gene39699:intron |
| AAAGGTTCGATTAAACCTGT+TGG | 0.549905 | 8.3:-80097746 | MS.gene39699:CDS |
| ATCCTGTTCCTTGGAAAACA+AGG | 0.550255 | 8.3:-80096557 | MS.gene39699:CDS |
| ATTGCACTCGGAGCAGCTCA+AGG | 0.555279 | 8.3:-80096528 | MS.gene39699:CDS |
| TATTGAAATCACTTGTTGCA+CGG | 0.561642 | 8.3:+80097810 | None:intergenic |
| TAGGGAGGGACCGGAAGCTG+GGG | 0.563974 | 8.3:-80095778 | MS.gene39699:CDS |
| TGGTATACCCCTAGGTGAAG+AGG | 0.572634 | 8.3:+80097889 | None:intergenic |
| CCAAAACTTTATGAGGAGAA+GGG | 0.578469 | 8.3:-80097869 | MS.gene39699:CDS |
| GTAACTTATGTTGTACATGT+TGG | 0.588524 | 8.3:+80094870 | None:intergenic |
| AGGCTTCTTAAGATAGGAGA+AGG | 0.590045 | 8.3:-80097788 | MS.gene39699:CDS |
| TGCCATCAAAAGGCTTAACA+AGG | 0.595915 | 8.3:-80097699 | MS.gene39699:CDS |
| CTTCTTAAGATAGGAGAAGG+TGG | 0.602567 | 8.3:-80097785 | MS.gene39699:CDS |
| TCATCTACCTCTTCACCTAG+GGG | 0.632921 | 8.3:-80097896 | MS.gene39699:CDS |
| ACAAGGCTTGAAATTGCACT+CGG | 0.643426 | 8.3:-80096540 | MS.gene39699:CDS |
| ACTTACAGCAGTTGAAACAT+GGG | 0.651234 | 8.3:+80095752 | None:intergenic |
| TGTGCTGTAGATGGTGAGAG+AGG | 0.664829 | 8.3:-80096654 | MS.gene39699:CDS |
| GTGCTGTAGATGGTGAGAGA+GGG | 0.670705 | 8.3:-80096653 | MS.gene39699:CDS |
| AGTATCCAATAAGCTTGACA+AGG | 0.672904 | 8.3:+80096676 | None:intergenic |
| TGATGTAGGGCCATAAGCAG+TGG | 0.732808 | 8.3:-80096740 | MS.gene39699:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATTATTTTTTTT+TGG | - | chr8.3:80096525-80096544 | MS.gene39699:CDS | 0.0% |
| !! | GATTGTATATTAAAATTAAT+AGG | + | chr8.3:80097767-80097786 | None:intergenic | 10.0% |
| !!! | AATAAAATTAAGTTTTATCT+TGG | - | chr8.3:80095219-80095238 | MS.gene39699:intron | 10.0% |
| !! | AAACATAAGAATTTGAATAT+TGG | - | chr8.3:80096409-80096428 | MS.gene39699:intron | 15.0% |
| !! | TTTATATAATTTACTAACGA+CGG | - | chr8.3:80096555-80096574 | MS.gene39699:CDS | 15.0% |
| !! | AAACAAATGCAAAGTAAAAA+TGG | + | chr8.3:80097071-80097090 | None:intergenic | 20.0% |
| !! | AAATAACTAAGGTATAGATA+AGG | - | chr8.3:80097148-80097167 | MS.gene39699:intron | 20.0% |
| !! | ATTGTCAAAAACATAAATGA+AGG | - | chr8.3:80095864-80095883 | MS.gene39699:intron | 20.0% |
| !! | TACAACATAAACAAATGATT+TGG | - | chr8.3:80097504-80097523 | MS.gene39699:intron | 20.0% |
| !! | TATAAACAAAGAAACAAATG+TGG | + | chr8.3:80095994-80096013 | None:intergenic | 20.0% |
| !!! | ACTGTAATTTTTGAAAAAAG+AGG | - | chr8.3:80095717-80095736 | MS.gene39699:intron | 20.0% |
| !!! | ATCTATACCTTAGTTATTTT+TGG | + | chr8.3:80097147-80097166 | None:intergenic | 20.0% |
| !!! | TCTATACCTTAGTTATTTTT+GGG | + | chr8.3:80097146-80097165 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr8.3:80096733-80096752 | MS.gene39699:CDS | 20.0% |
| !!! | TTTCTTTGATTCCATTATTT+TGG | - | chr8.3:80097814-80097833 | MS.gene39699:CDS | 20.0% |
| ! | ACTAAGAATTAGAAACAACA+AGG | - | chr8.3:80095444-80095463 | MS.gene39699:intron | 25.0% |
| ! | AGACCTAATCATTTAAGAAT+TGG | - | chr8.3:80096358-80096377 | MS.gene39699:intron | 25.0% |
| ! | AGCATTAATATATACACTCT+TGG | - | chr8.3:80096589-80096608 | MS.gene39699:CDS | 25.0% |
| ! | ATTCTTAAATGATTAGGTCT+AGG | + | chr8.3:80096358-80096377 | None:intergenic | 25.0% |
| ! | TATATCATGCATTCAAATTG+TGG | + | chr8.3:80096468-80096487 | None:intergenic | 25.0% |
| ! | TGAGATTCATGAAATTTCTT+AGG | - | chr8.3:80095109-80095128 | MS.gene39699:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr8.3:80096708-80096727 | None:intergenic | 25.0% |
| !! | AATGGTAATGAATAAACATC+AGG | + | chr8.3:80097053-80097072 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAATTATTAGCG+GGG | - | chr8.3:80096735-80096754 | MS.gene39699:CDS | 25.0% |
| !! | GATTTTCTCAAATTATTAGC+GGG | - | chr8.3:80096734-80096753 | MS.gene39699:CDS | 25.0% |
| !! | TCGTTGGATAAAATGTTTTT+GGG | - | chr8.3:80097270-80097289 | MS.gene39699:intron | 25.0% |
| !! | TTCGTTGGATAAAATGTTTT+TGG | - | chr8.3:80097269-80097288 | MS.gene39699:intron | 25.0% |
| !!! | AAACATAAATGAAGGCATTA+AGG | - | chr8.3:80095872-80095891 | MS.gene39699:intron | 25.0% |
| !!! | CTATACCTTAGTTATTTTTG+GGG | + | chr8.3:80097145-80097164 | None:intergenic | 25.0% |
| !!! | CTTGGTTTTCATATTTTTAG+TGG | - | chr8.3:80096607-80096626 | MS.gene39699:CDS | 25.0% |
| AAACAAGAATATCTAGACCT+AGG | + | chr8.3:80095679-80095698 | None:intergenic | 30.0% | |
| AAACCTTTCATATGATGTGT+TGG | - | chr8.3:80095383-80095402 | MS.gene39699:intron | 30.0% | |
| AACAATTGAGCTATGAAACA+CGG | + | chr8.3:80096805-80096824 | None:intergenic | 30.0% | |
| AACATTTGCAAGATTCTTGT+TGG | - | chr8.3:80097867-80097886 | MS.gene39699:CDS | 30.0% | |
| AAGAATCTTGCAAACATGAA+TGG | + | chr8.3:80095929-80095948 | None:intergenic | 30.0% | |
| AGTATGTGCAATCTATATCA+AGG | + | chr8.3:80097458-80097477 | None:intergenic | 30.0% | |
| ATGATAGGTACCAGAAAAAT+TGG | + | chr8.3:80097245-80097264 | None:intergenic | 30.0% | |
| ATTCGTACACAAGTAATCTT+TGG | + | chr8.3:80096146-80096165 | None:intergenic | 30.0% | |
| CATTTAAGAATTGGTCCATA+CGG | - | chr8.3:80096367-80096386 | MS.gene39699:intron | 30.0% | |
| CTTCATAACAATTGAGTGAT+AGG | + | chr8.3:80096641-80096660 | None:intergenic | 30.0% | |
| GCAAGAGATTTCCAAAATAA+TGG | + | chr8.3:80097828-80097847 | None:intergenic | 30.0% | |
| GGACCAATTCTTAAATGATT+AGG | + | chr8.3:80096364-80096383 | None:intergenic | 30.0% | |
| GTAACTTATGTTGTACATGT+TGG | + | chr8.3:80097904-80097923 | None:intergenic | 30.0% | |
| TAAATGTTCAAATGTCTTGC+TGG | - | chr8.3:80096930-80096949 | MS.gene39699:intron | 30.0% | |
| TAGGTCTAGATATTCTTGTT+TGG | - | chr8.3:80095678-80095697 | MS.gene39699:intron | 30.0% | |
| TATCCAACGAAACTAATGAT+AGG | + | chr8.3:80097260-80097279 | None:intergenic | 30.0% | |
| TTAACTGAAGTTCAGTTTCT+TGG | - | chr8.3:80096054-80096073 | MS.gene39699:intron | 30.0% | |
| TTCAATAGGCTTCTTAAGAT+AGG | - | chr8.3:80094977-80094996 | MS.gene39699:intron | 30.0% | |
| ! | AAGCCAAAACTTTCTGATTT+TGG | - | chr8.3:80096964-80096983 | MS.gene39699:intron | 30.0% |
| ! | AGTCCAAAATCAGAAAGTTT+TGG | + | chr8.3:80096970-80096989 | None:intergenic | 30.0% |
| ! | TATTGAAATCACTTGTTGCA+CGG | + | chr8.3:80094964-80094983 | None:intergenic | 30.0% |
| ! | TTTATCGTTTTCTTCTTGTG+TGG | - | chr8.3:80097588-80097607 | MS.gene39699:intron | 30.0% |
| !! | AACTCTAAAGTATCATGAAG+GGG | + | chr8.3:80097435-80097454 | None:intergenic | 30.0% |
| !! | ATGATTTGGAGTCTAGATTT+TGG | - | chr8.3:80097539-80097558 | MS.gene39699:intron | 30.0% |
| !! | CGTTGGATAAAATGTTTTTG+GGG | - | chr8.3:80097271-80097290 | MS.gene39699:intron | 30.0% |
| !! | GAACTCTAAAGTATCATGAA+GGG | + | chr8.3:80097436-80097455 | None:intergenic | 30.0% |
| AAAGGTTCGATTAAACCTGT+TGG | - | chr8.3:80095025-80095044 | MS.gene39699:intron | 35.0% | |
| AATCTTATGATCCTGTTCCT+TGG | - | chr8.3:80096205-80096224 | MS.gene39699:intron | 35.0% | |
| ACCAAAACTTTATGAGGAGA+AGG | - | chr8.3:80094901-80094920 | MS.gene39699:intron | 35.0% | |
| ACTTACAGCAGTTGAAACAT+GGG | + | chr8.3:80097022-80097041 | None:intergenic | 35.0% | |
| AGATTGCGTTAATTGTAACC+TGG | + | chr8.3:80096299-80096318 | None:intergenic | 35.0% | |
| AGGTATAGATAAGGTGAAAC+AGG | - | chr8.3:80097157-80097176 | MS.gene39699:intron | 35.0% | |
| AGTATCCAATAAGCTTGACA+AGG | + | chr8.3:80096098-80096117 | None:intergenic | 35.0% | |
| ATAGGTACCAGAAAAATTGG+AGG | + | chr8.3:80097242-80097261 | None:intergenic | 35.0% | |
| CACTCAATTGTTATGAAGCA+CGG | - | chr8.3:80096643-80096662 | MS.gene39699:CDS | 35.0% | |
| CAGCTAATGTGCAATAAAGT+TGG | + | chr8.3:80097950-80097969 | None:intergenic | 35.0% | |
| CCAAAACTTTATGAGGAGAA+GGG | - | chr8.3:80094902-80094921 | MS.gene39699:intron | 35.0% | |
| CTATCTTAGTTGCCATCAAA+AGG | - | chr8.3:80095062-80095081 | MS.gene39699:intron | 35.0% | |
| GGAGAAGAGATGAAATGATT+TGG | - | chr8.3:80097525-80097544 | MS.gene39699:intron | 35.0% | |
| GGGTATACCAAAACTTTATG+AGG | - | chr8.3:80094895-80094914 | MS.gene39699:CDS | 35.0% | |
| GGTATAGATAAGGTGAAACA+GGG | - | chr8.3:80097158-80097177 | MS.gene39699:intron | 35.0% | |
| GTGAACCCCAAAAATAACTA+AGG | - | chr8.3:80097137-80097156 | MS.gene39699:intron | 35.0% | |
| GTGCAACAAGTGATTTCAAT+AGG | - | chr8.3:80094963-80094982 | MS.gene39699:intron | 35.0% | |
| TACTAACGACGGTTATTTGA+AGG | - | chr8.3:80096566-80096585 | MS.gene39699:CDS | 35.0% | |
| TTGTGTATCTGTGTGATGTA+GGG | - | chr8.3:80096018-80096037 | MS.gene39699:intron | 35.0% | |
| ! | AATGTTTGAGACCATTGTGT+TGG | - | chr8.3:80097103-80097122 | MS.gene39699:intron | 35.0% |
| ! | ATCCTTGTTAAGCCTTTTGA+TGG | + | chr8.3:80095077-80095096 | None:intergenic | 35.0% |
| ! | ATTAAACCTGTTGGTGGAAA+TGG | - | chr8.3:80095034-80095053 | MS.gene39699:intron | 35.0% |
| ! | CAAGAGAAACATCAGTTTTC+AGG | - | chr8.3:80094824-80094843 | MS.gene39699:CDS | 35.0% |
| ! | CAAGGGAATTGATTTAGGTA+GGG | + | chr8.3:80095654-80095673 | None:intergenic | 35.0% |
| ! | GGATTTGGAAGTGTGTTTAA+AGG | - | chr8.3:80095007-80095026 | MS.gene39699:intron | 35.0% |
| ! | GTAATTATATGTGTCGGTGT+CGG | + | chr8.3:80096702-80096721 | None:intergenic | 35.0% |
| ! | GTACCTATCATTAGTTTCGT+TGG | - | chr8.3:80097254-80097273 | MS.gene39699:intron | 35.0% |
| ! | TCTGTTTCCTCCAATTTTTC+TGG | - | chr8.3:80097232-80097251 | MS.gene39699:intron | 35.0% |
| !! | CTTAATGTCATGTTCTGAAG+TGG | + | chr8.3:80097351-80097370 | None:intergenic | 35.0% |
| !! | CTTTTGATGGCAACTAAGAT+AGG | + | chr8.3:80095064-80095083 | None:intergenic | 35.0% |
| !! | GGAACTCTAAAGTATCATGA+AGG | + | chr8.3:80097437-80097456 | None:intergenic | 35.0% |
| !! | TAAAGTTTTGGTATACCCCT+AGG | + | chr8.3:80094893-80094912 | None:intergenic | 35.0% |
| !! | TCTAGATTTTGGCAGAGTTT+TGG | - | chr8.3:80097550-80097569 | MS.gene39699:intron | 35.0% |
| !!! | ATTTCAAGCCTTGTTTTCCA+AGG | + | chr8.3:80096225-80096244 | None:intergenic | 35.0% |
| !!! | GATAAAATGTTTTTGGGGTG+AGG | - | chr8.3:80097276-80097295 | MS.gene39699:intron | 35.0% |
| !!! | GTAGTTTTGTTTTATCACGC+TGG | - | chr8.3:80097373-80097392 | MS.gene39699:intron | 35.0% |
| AAATCAATTCCCTTGCACCT+AGG | - | chr8.3:80095659-80095678 | MS.gene39699:intron | 40.0% | |
| AATATCTAGACCTAGGTGCA+AGG | + | chr8.3:80095672-80095691 | None:intergenic | 40.0% | |
| ACAAGGCTTGAAATTGCACT+CGG | - | chr8.3:80096231-80096250 | MS.gene39699:intron | 40.0% | |
| AGGAGAAGGGTCATAATTTG+AGG | - | chr8.3:80094915-80094934 | MS.gene39699:intron | 40.0% | |
| AGGCTTCTTAAGATAGGAGA+AGG | - | chr8.3:80094983-80095002 | MS.gene39699:intron | 40.0% | |
| ATATCTAGACCTAGGTGCAA+GGG | + | chr8.3:80095671-80095690 | None:intergenic | 40.0% | |
| ATCCTGTTCCTTGGAAAACA+AGG | - | chr8.3:80096214-80096233 | MS.gene39699:intron | 40.0% | |
| ATTAGGTCTAGGCATGTGAA+GGG | + | chr8.3:80096347-80096366 | None:intergenic | 40.0% | |
| ATTGGATACTGTGCTGTAGA+TGG | - | chr8.3:80096108-80096127 | MS.gene39699:intron | 40.0% | |
| CACAGGAAATTCCAACACAA+TGG | + | chr8.3:80097117-80097136 | None:intergenic | 40.0% | |
| CACTTACAGCAGTTGAAACA+TGG | + | chr8.3:80097023-80097042 | None:intergenic | 40.0% | |
| CATTGTGTTGGAATTTCCTG+TGG | - | chr8.3:80097115-80097134 | MS.gene39699:intron | 40.0% | |
| CCAAACCTTGTCAAGCTTAT+TGG | - | chr8.3:80096090-80096109 | MS.gene39699:intron | 40.0% | |
| CCAATAAGCTTGACAAGGTT+TGG | + | chr8.3:80096093-80096112 | None:intergenic | 40.0% | |
| CCACCAACACATCATATGAA+AGG | + | chr8.3:80095389-80095408 | None:intergenic | 40.0% | |
| CCTTTCATATGATGTGTTGG+TGG | - | chr8.3:80095386-80095405 | MS.gene39699:intron | 40.0% | |
| CTTCAGTTAACCACTGCTTA+TGG | + | chr8.3:80096044-80096063 | None:intergenic | 40.0% | |
| CTTCTTAAGATAGGAGAAGG+TGG | - | chr8.3:80094986-80095005 | MS.gene39699:intron | 40.0% | |
| CTTGTGTATCTGTGTGATGT+AGG | - | chr8.3:80096017-80096036 | MS.gene39699:intron | 40.0% | |
| GATCAACAACAATAGCTGCA+CGG | + | chr8.3:80095533-80095552 | None:intergenic | 40.0% | |
| GCATGAAGAATTAGAAGTCC+AGG | - | chr8.3:80096278-80096297 | MS.gene39699:intron | 40.0% | |
| GGAGAAGGGTCATAATTTGA+GGG | - | chr8.3:80094916-80094935 | MS.gene39699:intron | 40.0% | |
| GTTCACAAACACGAGTTCAA+TGG | + | chr8.3:80095743-80095762 | None:intergenic | 40.0% | |
| GTTGATACAAGCCTGAAGTT+TGG | - | chr8.3:80097180-80097199 | MS.gene39699:intron | 40.0% | |
| TAGTTGCACATTACACCGTA+TGG | + | chr8.3:80096385-80096404 | None:intergenic | 40.0% | |
| TCAAAAGATGCGTCTCTTCA+TGG | + | chr8.3:80097789-80097808 | None:intergenic | 40.0% | |
| TCTCAAATTATTAGCGGGGT+TGG | - | chr8.3:80096739-80096758 | MS.gene39699:intron | 40.0% | |
| TGAGCTTCTAAGCTTCGATT+TGG | + | chr8.3:80096174-80096193 | None:intergenic | 40.0% | |
| TGCCATCAAAAGGCTTAACA+AGG | - | chr8.3:80095072-80095091 | MS.gene39699:intron | 40.0% | |
| TTCATCTACCTCTTCACCTA+GGG | - | chr8.3:80094874-80094893 | MS.gene39699:CDS | 40.0% | |
| TTGAGCTATGAAACACGGTA+CGG | + | chr8.3:80096800-80096819 | None:intergenic | 40.0% | |
| ! | AAGATAGGAGAAGGTGGATT+TGG | - | chr8.3:80094992-80095011 | MS.gene39699:intron | 40.0% |
| ! | AGGTGCAAGGGAATTGATTT+AGG | + | chr8.3:80095659-80095678 | None:intergenic | 40.0% |
| ! | ATTGATTTAGGTAGGGCTCA+AGG | + | chr8.3:80095647-80095666 | None:intergenic | 40.0% |
| ! | CCCTTCTCCTCATAAAGTTT+TGG | + | chr8.3:80094905-80094924 | None:intergenic | 40.0% |
| ! | GCAAGGGAATTGATTTAGGT+AGG | + | chr8.3:80095655-80095674 | None:intergenic | 40.0% |
| ! | TTCTGATTTTGGACTCGCTA+GGG | - | chr8.3:80096975-80096994 | MS.gene39699:intron | 40.0% |
| ! | TTTCTGATTTTGGACTCGCT+AGG | - | chr8.3:80096974-80096993 | MS.gene39699:intron | 40.0% |
| !! | AGTTCAGTTTCTTGGTGTTG+TGG | - | chr8.3:80096062-80096081 | MS.gene39699:intron | 40.0% |
| !!! | TTATTTTTGGGGTTCACCAC+AGG | + | chr8.3:80097134-80097153 | None:intergenic | 40.0% |
| AACAAGGCTGATGATCCTCA+GGG | - | chr8.3:80095460-80095479 | MS.gene39699:intron | 45.0% | |
| AACAATAGCTGCACGGAGTA+CGG | + | chr8.3:80095526-80095545 | None:intergenic | 45.0% | |
| ATACAAGCCTGAAGTTTGGC+TGG | - | chr8.3:80097184-80097203 | MS.gene39699:intron | 45.0% | |
| CTGCATCTGTGTGTAGCAAT+TGG | - | chr8.3:80095777-80095796 | MS.gene39699:CDS | 45.0% | |
| GATTAGGTCTAGGCATGTGA+AGG | + | chr8.3:80096348-80096367 | None:intergenic | 45.0% | |
| GCTTAACAAGGATGCATTGC+AGG | - | chr8.3:80095084-80095103 | MS.gene39699:intron | 45.0% | |
| GGTTCGATTAAACCTGTTGG+TGG | - | chr8.3:80095028-80095047 | MS.gene39699:intron | 45.0% | |
| GTTCATCTACCTCTTCACCT+AGG | - | chr8.3:80094873-80094892 | MS.gene39699:CDS | 45.0% | |
| TAATGCAGATAGAGACCCTG+AGG | + | chr8.3:80095494-80095513 | None:intergenic | 45.0% | |
| TATGAAACACGGTACGGACA+CGG | + | chr8.3:80096794-80096813 | None:intergenic | 45.0% | |
| TCATCTACCTCTTCACCTAG+GGG | - | chr8.3:80094875-80094894 | MS.gene39699:CDS | 45.0% | |
| !! | TCACGCTGGTTTCGTTAAAC+TGG | - | chr8.3:80097387-80097406 | MS.gene39699:intron | 45.0% |
| !! | TTCTCTTGCTCTTCTAGCTC+AGG | + | chr8.3:80094812-80094831 | None:intergenic | 45.0% |
| !!! | AGCCTTGTTTTCCAAGGAAC+AGG | + | chr8.3:80096219-80096238 | None:intergenic | 45.0% |
| CAACAAGGCTGATGATCCTC+AGG | - | chr8.3:80095459-80095478 | MS.gene39699:intron | 50.0% | |
| CAGAGACAAAGGAAGCGACT+TGG | - | chr8.3:80095612-80095631 | MS.gene39699:intron | 50.0% | |
| CTCAGGGTTGTTGATCCTCA+GGG | - | chr8.3:80095476-80095495 | MS.gene39699:intron | 50.0% | |
| CTTGATGCCAGCCAAACTTC+AGG | + | chr8.3:80097194-80097213 | None:intergenic | 50.0% | |
| GGATCACCATTTCCACCAAC+AGG | + | chr8.3:80095043-80095062 | None:intergenic | 50.0% | |
| GTGCTGTAGATGGTGAGAGA+GGG | - | chr8.3:80096118-80096137 | MS.gene39699:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr8.3:80096654-80096673 | MS.gene39699:CDS | 50.0% | |
| TGATGTAGGGCCATAAGCAG+TGG | - | chr8.3:80096031-80096050 | MS.gene39699:intron | 50.0% | |
| TGGTATACCCCTAGGTGAAG+AGG | + | chr8.3:80094885-80094904 | None:intergenic | 50.0% | |
| TGTGCTGTAGATGGTGAGAG+AGG | - | chr8.3:80096117-80096136 | MS.gene39699:intron | 50.0% | |
| ! | GATTTTGGACTCGCTAGGGA+GGG | - | chr8.3:80096979-80096998 | MS.gene39699:intron | 50.0% |
| ! | TGATTTTGGACTCGCTAGGG+AGG | - | chr8.3:80096978-80096997 | MS.gene39699:intron | 50.0% |
| !!! | AGGGTCTTTTGGCTTCCTCA+GGG | - | chr8.3:80095565-80095584 | MS.gene39699:intron | 50.0% |
| AAAAGACCCTCAGGCTCTGC+AGG | + | chr8.3:80095555-80095574 | None:intergenic | 55.0% | |
| ACATGGGTATCCCCAGCTTC+CGG | + | chr8.3:80097006-80097025 | None:intergenic | 55.0% | |
| ATTGCACTCGGAGCAGCTCA+AGG | - | chr8.3:80096243-80096262 | MS.gene39699:intron | 55.0% | |
| CCTCAGGGTTGTTGATCCTC+AGG | - | chr8.3:80095475-80095494 | MS.gene39699:intron | 55.0% | |
| CCTGAGGATCAACAACCCTG+AGG | + | chr8.3:80095478-80095497 | None:intergenic | 55.0% | |
| GAGGAAGCCAAAAGACCCTC+AGG | + | chr8.3:80095564-80095583 | None:intergenic | 55.0% | |
| GGTGTGAAGCTAGCTGCGTT+CGG | - | chr8.3:80095589-80095608 | MS.gene39699:intron | 55.0% | |
| GTCAGTGTCCGTGTCGTGTT+CGG | - | chr8.3:80096765-80096784 | MS.gene39699:intron | 55.0% | |
| GTTGATCCTGCAGAGCCTGA+GGG | - | chr8.3:80095546-80095565 | MS.gene39699:intron | 55.0% | |
| TGTTGATCCTGCAGAGCCTG+AGG | - | chr8.3:80095545-80095564 | MS.gene39699:intron | 55.0% | |
| ! | AGGAAGCGACTTGGACATCG+CGG | - | chr8.3:80095621-80095640 | MS.gene39699:intron | 55.0% |
| ! | TCCTCGGATTAGACGTGTCC+CGG | - | chr8.3:80096670-80096689 | MS.gene39699:CDS | 55.0% |
| ! | TGCAGAGCCTGAGGGTCTTT+TGG | - | chr8.3:80095554-80095573 | MS.gene39699:intron | 55.0% |
| !!! | GAGGGTCTTTTGGCTTCCTC+AGG | - | chr8.3:80095564-80095583 | MS.gene39699:intron | 55.0% |
| !!! | GTCTTTTGGCTTCCTCAGGG+CGG | - | chr8.3:80095568-80095587 | MS.gene39699:intron | 55.0% |
| ACCGGGACACGTCTAATCCG+AGG | + | chr8.3:80096674-80096693 | None:intergenic | 60.0% | |
| CACGGACACCGAACACGACA+CGG | + | chr8.3:80096776-80096795 | None:intergenic | 60.0% | |
| GCTGCGTTCGGCAGAGACAA+AGG | - | chr8.3:80095601-80095620 | MS.gene39699:intron | 60.0% | |
| CTAGGGAGGGACCGGAAGCT+GGG | - | chr8.3:80096992-80097011 | MS.gene39699:intron | 65.0% | |
| TAGGGAGGGACCGGAAGCTG+GGG | - | chr8.3:80096993-80097012 | MS.gene39699:intron | 65.0% | |
| TGGACTCGCTAGGGAGGGAC+CGG | - | chr8.3:80096984-80097003 | MS.gene39699:intron | 65.0% | |
| ! | GCTAGCTTCACACCGCCCTG+AGG | + | chr8.3:80095583-80095602 | None:intergenic | 65.0% |
| !! | GTGTCGGTGTCGGACACGAC+CGG | + | chr8.3:80096692-80096711 | None:intergenic | 65.0% |
| !! | TGTCGGTGTCGGACACGACC+GGG | + | chr8.3:80096691-80096710 | None:intergenic | 65.0% |
| GCTAGGGAGGGACCGGAAGC+TGG | - | chr8.3:80096991-80097010 | MS.gene39699:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 80094789 | 80098004 | 80094789 | ID=MS.gene39699 |
| chr8.3 | mRNA | 80094789 | 80098004 | 80094789 | ID=MS.gene39699.t1;Parent=MS.gene39699 |
| chr8.3 | exon | 80097688 | 80098004 | 80097688 | ID=MS.gene39699.t1.exon1;Parent=MS.gene39699.t1 |
| chr8.3 | CDS | 80097688 | 80098004 | 80097688 | ID=cds.MS.gene39699.t1;Parent=MS.gene39699.t1 |
| chr8.3 | exon | 80096494 | 80096754 | 80096494 | ID=MS.gene39699.t1.exon2;Parent=MS.gene39699.t1 |
| chr8.3 | CDS | 80096494 | 80096754 | 80096494 | ID=cds.MS.gene39699.t1;Parent=MS.gene39699.t1 |
| chr8.3 | exon | 80095758 | 80095880 | 80095758 | ID=MS.gene39699.t1.exon3;Parent=MS.gene39699.t1 |
| chr8.3 | CDS | 80095758 | 80095880 | 80095758 | ID=cds.MS.gene39699.t1;Parent=MS.gene39699.t1 |
| chr8.3 | exon | 80094789 | 80094914 | 80094789 | ID=MS.gene39699.t1.exon4;Parent=MS.gene39699.t1 |
| chr8.3 | CDS | 80094789 | 80094914 | 80094789 | ID=cds.MS.gene39699.t1;Parent=MS.gene39699.t1 |
| Gene Sequence |
| Protein sequence |
