Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40010.t1 | XP_003590693.1 | 99.5 | 417 | 2 | 0 | 1 | 417 | 1 | 417 | 4.20E-222 | 780.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40010.t1 | Q9M8J9 | 75.6 | 377 | 92 | 0 | 39 | 415 | 30 | 406 | 9.2e-170 | 597.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40010.t1 | G7I2K6 | 99.5 | 417 | 2 | 0 | 1 | 417 | 1 | 417 | 3.0e-222 | 780.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40010 | 0.80173 | 7.84E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene40010 | 0.805005 | 1.65E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene40010 | 0.805149 | 1.53E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene40010 | 0.816496 | 5.37E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene40010 | 0.812228 | 4.71E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene40010 | 0.829005 | 6.56E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene40010 | 0.826055 | 3.35E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene40010 | -0.802867 | 4.58E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene40010 | 0.808978 | 2.37E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene40010 | 0.820765 | 5.77E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene40010 | 0.839073 | 1.97E-57 | -1.69E-46 |
| MS.gene061188 | MS.gene40010 | 0.811788 | 5.87E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40010 | MS.gene006074 | PPI |
| MS.gene40010 | MS.gene60766 | PPI |
| MS.gene40010 | MS.gene33918 | PPI |
| MS.gene40010 | MS.gene88846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40010.t1 | MTR_1g072650 | 99.520 | 417 | 2 | 0 | 1 | 417 | 1 | 417 | 0.0 | 864 |
| MS.gene40010.t1 | MTR_7g094490 | 88.164 | 414 | 45 | 1 | 1 | 414 | 1 | 410 | 0.0 | 729 |
| MS.gene40010.t1 | MTR_5g087500 | 57.545 | 391 | 149 | 6 | 33 | 413 | 23 | 406 | 8.07e-155 | 444 |
| MS.gene40010.t1 | MTR_7g086500 | 56.883 | 385 | 158 | 4 | 36 | 415 | 13 | 394 | 9.53e-145 | 419 |
| MS.gene40010.t1 | MTR_5g087500 | 61.027 | 331 | 120 | 5 | 33 | 359 | 23 | 348 | 4.21e-141 | 406 |
| MS.gene40010.t1 | MTR_5g087500 | 60.486 | 329 | 122 | 4 | 33 | 357 | 23 | 347 | 1.09e-140 | 405 |
| MS.gene40010.t1 | MTR_7g086500 | 59.317 | 322 | 125 | 3 | 36 | 354 | 13 | 331 | 5.42e-128 | 373 |
| MS.gene40010.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 39 | 217 | 23 | 201 | 1.01e-70 | 227 |
| MS.gene40010.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 39 | 217 | 23 | 201 | 1.44e-69 | 225 |
| MS.gene40010.t1 | MTR_3g069000 | 54.595 | 185 | 84 | 0 | 204 | 388 | 51 | 235 | 3.80e-60 | 197 |
| MS.gene40010.t1 | MTR_1g104870 | 31.098 | 164 | 89 | 4 | 191 | 348 | 519 | 664 | 2.99e-15 | 78.2 |
| MS.gene40010.t1 | MTR_5g005940 | 30.435 | 161 | 94 | 3 | 191 | 348 | 516 | 661 | 4.15e-14 | 74.7 |
| MS.gene40010.t1 | MTR_7g094900 | 28.395 | 162 | 96 | 4 | 191 | 348 | 525 | 670 | 2.40e-13 | 72.4 |
| MS.gene40010.t1 | MTR_7g094910 | 28.395 | 162 | 96 | 4 | 191 | 348 | 506 | 651 | 2.62e-13 | 72.4 |
| MS.gene40010.t1 | MTR_3g088660 | 27.568 | 185 | 113 | 5 | 205 | 383 | 74 | 243 | 1.44e-12 | 67.8 |
| MS.gene40010.t1 | MTR_3g061090 | 27.219 | 169 | 108 | 3 | 184 | 350 | 66 | 221 | 1.03e-11 | 65.1 |
| MS.gene40010.t1 | MTR_3g061090 | 28.289 | 152 | 94 | 3 | 201 | 350 | 155 | 293 | 1.74e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40010.t1 | AT3G06190 | 72.616 | 409 | 108 | 1 | 7 | 415 | 2 | 406 | 0.0 | 626 |
| MS.gene40010.t1 | AT5G19000 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| MS.gene40010.t1 | AT5G19000 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| MS.gene40010.t1 | AT5G19000 | 66.667 | 411 | 102 | 1 | 40 | 415 | 32 | 442 | 0.0 | 575 |
| MS.gene40010.t1 | AT3G06190 | 72.857 | 350 | 91 | 1 | 7 | 356 | 2 | 347 | 0.0 | 539 |
| MS.gene40010.t1 | AT2G39760 | 60.674 | 356 | 139 | 1 | 27 | 382 | 11 | 365 | 4.19e-164 | 467 |
| MS.gene40010.t1 | AT3G03740 | 60.548 | 365 | 133 | 4 | 22 | 382 | 31 | 388 | 4.62e-153 | 441 |
| MS.gene40010.t1 | AT2G39760 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 1.15e-150 | 431 |
| MS.gene40010.t1 | AT2G39760 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 1.15e-150 | 431 |
| MS.gene40010.t1 | AT2G39760 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 1.38e-150 | 431 |
| MS.gene40010.t1 | AT3G43700 | 53.171 | 410 | 176 | 7 | 16 | 413 | 8 | 413 | 5.34e-146 | 422 |
| MS.gene40010.t1 | AT5G21010 | 52.068 | 411 | 181 | 6 | 15 | 413 | 2 | 408 | 4.40e-142 | 411 |
| MS.gene40010.t1 | AT3G43700 | 55.807 | 353 | 143 | 6 | 16 | 359 | 8 | 356 | 1.89e-134 | 390 |
| MS.gene40010.t1 | AT3G43700 | 56.609 | 348 | 138 | 6 | 16 | 354 | 8 | 351 | 3.63e-134 | 389 |
| MS.gene40010.t1 | AT3G06190 | 65.529 | 293 | 90 | 3 | 7 | 292 | 2 | 290 | 6.28e-133 | 384 |
| MS.gene40010.t1 | AT3G06190 | 71.538 | 260 | 70 | 1 | 7 | 266 | 2 | 257 | 1.65e-132 | 383 |
| MS.gene40010.t1 | AT3G06190 | 70.866 | 254 | 70 | 1 | 7 | 260 | 2 | 251 | 4.43e-126 | 366 |
| MS.gene40010.t1 | AT3G06190 | 59.649 | 57 | 23 | 0 | 359 | 415 | 239 | 295 | 1.47e-13 | 71.2 |
| MS.gene40010.t1 | AT5G19330 | 29.193 | 161 | 96 | 3 | 191 | 348 | 521 | 666 | 1.00e-15 | 79.7 |
| MS.gene40010.t1 | AT5G13060 | 26.368 | 201 | 133 | 3 | 189 | 388 | 546 | 732 | 9.18e-14 | 73.9 |
| MS.gene40010.t1 | AT1G55760 | 28.481 | 158 | 102 | 3 | 193 | 350 | 146 | 292 | 9.51e-11 | 63.2 |
Find 87 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAAGACAGTTATCTTTA+AGG | 0.101359 | 1.4:+59515971 | None:intergenic |
| CATTGCTGCATGTTATATAT+TGG | 0.221491 | 1.4:-59514815 | MS.gene40010:CDS |
| CTCTCAAAAGGGATTGGAAT+TGG | 0.250201 | 1.4:-59516987 | MS.gene40010:CDS |
| TTACTGGGATTAACTCAAAA+TGG | 0.277584 | 1.4:-59514767 | MS.gene40010:CDS |
| TCTACTATTGGTCCCCAGTT+TGG | 0.284794 | 1.4:-59515877 | MS.gene40010:CDS |
| TTTCCAAAAGCTTCCCAAAC+TGG | 0.294997 | 1.4:+59515863 | None:intergenic |
| TCCCCAGTTTGGGAAGCTTT+TGG | 0.300829 | 1.4:-59515866 | MS.gene40010:CDS |
| CTACTATTGGTCCCCAGTTT+GGG | 0.307734 | 1.4:-59515876 | MS.gene40010:CDS |
| CCTGACATGCAAGAGCTTAC+TGG | 0.322826 | 1.4:-59514783 | MS.gene40010:CDS |
| CGAGTGAAGGGACTGATGTT+AGG | 0.326194 | 1.4:-59516845 | MS.gene40010:CDS |
| CCAATATCACCTTCTACTAT+TGG | 0.326476 | 1.4:-59515889 | MS.gene40010:CDS |
| CCAATAGTAGAAGGTGATAT+TGG | 0.333472 | 1.4:+59515889 | None:intergenic |
| GAACCTATGTGAGCCTTTGA+TGG | 0.352408 | 1.4:+59517028 | None:intergenic |
| CCACGATATTTCAACGTATA+AGG | 0.352677 | 1.4:+59516735 | None:intergenic |
| ATTGCTGCATGTTATATATT+GGG | 0.354568 | 1.4:-59514814 | MS.gene40010:CDS |
| ATTGGAATCGAAAATGTTCT+AGG | 0.357925 | 1.4:+59515907 | None:intergenic |
| CATCAGCCTAAGTCTATCTA+AGG | 0.367304 | 1.4:+59514695 | None:intergenic |
| CTTGATGGCAGTGATGTAAA+TGG | 0.372844 | 1.4:-59513967 | MS.gene40010:CDS |
| ATTATTTAAACCTTGAAAAC+AGG | 0.377554 | 1.4:+59515682 | None:intergenic |
| CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 1.4:+59514783 | None:intergenic |
| TCACATAGGTTCAAGATAAC+GGG | 0.392891 | 1.4:-59517017 | MS.gene40010:CDS |
| CGTGGCTACAACTTTAGCTT+TGG | 0.416152 | 1.4:-59514634 | MS.gene40010:CDS |
| TCTCAAAAGGGATTGGAATT+GGG | 0.424168 | 1.4:-59516986 | MS.gene40010:CDS |
| GATGTTGAGGAGGTTGTTGA+TGG | 0.428183 | 1.4:+59517062 | None:intergenic |
| GGCTAGATTTACTGAGCATT+CGG | 0.434481 | 1.4:-59514022 | MS.gene40010:CDS |
| CACCGTTGGTGGGTACGAAT+GGG | 0.437086 | 1.4:-59516940 | MS.gene40010:CDS |
| TCACCGTTGGTGGGTACGAA+TGG | 0.438080 | 1.4:-59516941 | MS.gene40010:CDS |
| ACGGGGTATTCACTCTCAAA+AGG | 0.441675 | 1.4:-59516999 | MS.gene40010:CDS |
| TTCCAAAAGCTTCCCAAACT+GGG | 0.448572 | 1.4:+59515864 | None:intergenic |
| TTCATCGCGCTTGCGAGTGA+AGG | 0.449539 | 1.4:-59516858 | MS.gene40010:CDS |
| CTCACATAGGTTCAAGATAA+CGG | 0.449878 | 1.4:-59517018 | MS.gene40010:CDS |
| AAAATGGGCAACTACCTTGA+TGG | 0.450276 | 1.4:-59514751 | MS.gene40010:CDS |
| CTGACATGCAAGAGCTTACT+GGG | 0.457209 | 1.4:-59514782 | MS.gene40010:CDS |
| TGATGGTTTCGAGTACTTGA+AGG | 0.459553 | 1.4:-59514085 | MS.gene40010:CDS |
| TTAAACAGACTGCTTTCAGC+TGG | 0.459811 | 1.4:+59514592 | None:intergenic |
| TGTGTGTTCTGATCTTTCAT+AGG | 0.465282 | 1.4:+59515733 | None:intergenic |
| AACTGGGGACCAATAGTAGA+AGG | 0.475932 | 1.4:+59515880 | None:intergenic |
| TATTCACTCTCAAAAGGGAT+TGG | 0.480986 | 1.4:-59516993 | MS.gene40010:CDS |
| GAGGTTGTTGATGGAATTGA+GGG | 0.492292 | 1.4:+59517071 | None:intergenic |
| GAGTGAAGGGACTGATGTTA+GGG | 0.509324 | 1.4:-59516844 | MS.gene40010:CDS |
| CTTCGTTCCTATGCTTGCAC+AGG | 0.511010 | 1.4:+59513995 | None:intergenic |
| AGATGATGATGATGAATTTG+AGG | 0.513479 | 1.4:+59517109 | None:intergenic |
| GGAGGTTGTTGATGGAATTG+AGG | 0.515360 | 1.4:+59517070 | None:intergenic |
| ATCTGCTAGCAGCAGCTGAT+CGG | 0.518356 | 1.4:-59514722 | MS.gene40010:CDS |
| TACTGGGATTAACTCAAAAT+GGG | 0.520060 | 1.4:-59514766 | MS.gene40010:CDS |
| CGGGGTATTCACTCTCAAAA+GGG | 0.521264 | 1.4:-59516998 | MS.gene40010:CDS |
| TCATCGCGCTTGCGAGTGAA+GGG | 0.522765 | 1.4:-59516857 | MS.gene40010:CDS |
| AAAAGCTCAGTCAAAACAGA+TGG | 0.526627 | 1.4:+59514054 | None:intergenic |
| TCTGTTTAAAATTCATTGCA+AGG | 0.531761 | 1.4:-59514578 | MS.gene40010:CDS |
| CTTAGTGTTAATTGTAGCGT+TGG | 0.538942 | 1.4:-59515955 | MS.gene40010:CDS |
| GATGGAATTGAGGGTGGTGA+TGG | 0.542993 | 1.4:+59517080 | None:intergenic |
| AGGAACGAAGCAATACTTGA+TGG | 0.545226 | 1.4:-59513982 | MS.gene40010:CDS |
| GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 1.4:-59516793 | MS.gene40010:CDS |
| CTGCTTTCAGCTGGAAACAA+TGG | 0.557661 | 1.4:+59514601 | None:intergenic |
| TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 1.4:-59516800 | MS.gene40010:CDS |
| TAGCAGATGCTGAGCCATCA+AGG | 0.560135 | 1.4:+59514737 | None:intergenic |
| TTGGAATCGAAAATGTTCTA+GGG | 0.573539 | 1.4:+59515908 | None:intergenic |
| TTTGATAGGACGTTGGAGAG+TGG | 0.581385 | 1.4:-59516759 | MS.gene40010:CDS |
| CGGACTTCCTGTGCAAGCAT+AGG | 0.582301 | 1.4:-59514002 | MS.gene40010:CDS |
| ATGTGAGCCTTTGATGGTGT+CGG | 0.584850 | 1.4:+59517034 | None:intergenic |
| GTTGTTGATGGAATTGAGGG+TGG | 0.596454 | 1.4:+59517074 | None:intergenic |
| TGAAATATCGTGGTAGCATG+TGG | 0.600425 | 1.4:-59516725 | MS.gene40010:intron |
| TCGATAACCGACACCATCAA+AGG | 0.601387 | 1.4:-59517041 | MS.gene40010:CDS |
| CAAAGCTAAAGTTGTAGCCA+CGG | 0.605118 | 1.4:+59514635 | None:intergenic |
| TCAGCTGTGATGCAAACTGA+TGG | 0.605667 | 1.4:-59514102 | MS.gene40010:intron |
| ATTGTAGCGTTGGTGTTGTG+AGG | 0.611297 | 1.4:-59515945 | MS.gene40010:CDS |
| CAGTGATGTAAATGGAAGGC+GGG | 0.613054 | 1.4:-59513959 | MS.gene40010:CDS |
| CGCCCATTCGTACCCACCAA+CGG | 0.616095 | 1.4:+59516938 | None:intergenic |
| GATGATGATGAATTTGAGGA+TGG | 0.626655 | 1.4:+59517113 | None:intergenic |
| CCTTATACGTTGAAATATCG+TGG | 0.627057 | 1.4:-59516735 | MS.gene40010:CDS |
| TCCAAAAGCTTCCCAAACTG+GGG | 0.628406 | 1.4:+59515865 | None:intergenic |
| AAAGCTCAGTCAAAACAGAT+GGG | 0.629546 | 1.4:+59514055 | None:intergenic |
| TATAAAAGTTGAAGATATCG+AGG | 0.632506 | 1.4:-59515707 | MS.gene40010:CDS |
| ACACCATCAAAGGCTCACAT+AGG | 0.632820 | 1.4:-59517031 | MS.gene40010:CDS |
| GTCGGTTATCGATGTTGAGG+AGG | 0.637096 | 1.4:+59517052 | None:intergenic |
| GTTGTGAGGTCACACACAGA+GGG | 0.645126 | 1.4:-59515931 | MS.gene40010:CDS |
| GGTATGCCTTAGATAGACTT+AGG | 0.647862 | 1.4:-59514701 | MS.gene40010:CDS |
| CACATAGGTTCAAGATAACG+GGG | 0.658135 | 1.4:-59517016 | MS.gene40010:CDS |
| CCCTGATGGGAAAAGCGTGG+AGG | 0.667337 | 1.4:-59516904 | MS.gene40010:CDS |
| TTACCCTGATGGGAAAAGCG+TGG | 0.670712 | 1.4:-59516907 | MS.gene40010:CDS |
| AGATTCTTCGCGAAACAACG+AGG | 0.699126 | 1.4:-59517136 | MS.gene40010:CDS |
| ATGGCAGTGATGTAAATGGA+AGG | 0.702793 | 1.4:-59513963 | MS.gene40010:CDS |
| AGATGTTGCAATAAATACCG+TGG | 0.705274 | 1.4:-59514652 | MS.gene40010:CDS |
| GCAGTGATGTAAATGGAAGG+CGG | 0.707656 | 1.4:-59513960 | MS.gene40010:CDS |
| GGTGTCGGTTATCGATGTTG+AGG | 0.707765 | 1.4:+59517049 | None:intergenic |
| TGTTGTGAGGTCACACACAG+AGG | 0.714300 | 1.4:-59515932 | MS.gene40010:CDS |
| GCAAGGCCTGAAAATCTCAG+AGG | 0.724609 | 1.4:-59514561 | MS.gene40010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCTTAACAATTATAATAA+GGG | + | chr1.4:59515550-59515569 | None:intergenic | 15.0% |
| !! | TATGCTTAACAATTATAATA+AGG | + | chr1.4:59515551-59515570 | None:intergenic | 15.0% |
| !! | TCAAAATAGAGAAAAAAATA+TGG | + | chr1.4:59516235-59516254 | None:intergenic | 15.0% |
| !! | TTATAAGAAAGATGAAAATT+TGG | - | chr1.4:59514624-59514643 | MS.gene40010:CDS | 15.0% |
| !!! | AATGTTGATAAAAAAAATAG+AGG | + | chr1.4:59515814-59515833 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCTCTATTTTGA+AGG | - | chr1.4:59516235-59516254 | MS.gene40010:intron | 15.0% |
| !! | AAAAATATGTGCAATATTAG+GGG | - | chr1.4:59516586-59516605 | MS.gene40010:intron | 20.0% |
| !! | AGAAAAATATGTGCAATATT+AGG | - | chr1.4:59516584-59516603 | MS.gene40010:intron | 20.0% |
| !! | AGAACACAACAATAAAAATA+TGG | - | chr1.4:59515771-59515790 | MS.gene40010:CDS | 20.0% |
| !! | ATTATTTAAACCTTGAAAAC+AGG | + | chr1.4:59515394-59515413 | None:intergenic | 20.0% |
| !! | GAAAAATATGTGCAATATTA+GGG | - | chr1.4:59516585-59516604 | MS.gene40010:intron | 20.0% |
| !! | TAAAGGAAATAAAATCAGAA+AGG | + | chr1.4:59516003-59516022 | None:intergenic | 20.0% |
| !! | TCTAATTCTTATTAAACCAT+TGG | - | chr1.4:59516063-59516082 | MS.gene40010:intron | 20.0% |
| !! | TCTTTATACCAATTAACATT+TGG | + | chr1.4:59515866-59515885 | None:intergenic | 20.0% |
| !! | TGCTTAACAATTATAATAAG+GGG | + | chr1.4:59515549-59515568 | None:intergenic | 20.0% |
| !!! | ATTACTTTGAGTTATTTAAG+GGG | + | chr1.4:59514866-59514885 | None:intergenic | 20.0% |
| !!! | ATTGTTTTAAATTGTGTTTC+AGG | - | chr1.4:59515032-59515051 | MS.gene40010:intron | 20.0% |
| !!! | ATTTTATTTCCTTTATTGCT+TGG | - | chr1.4:59516008-59516027 | MS.gene40010:CDS | 20.0% |
| !!! | CATTACTTTGAGTTATTTAA+GGG | + | chr1.4:59514867-59514886 | None:intergenic | 20.0% |
| !!! | GTTCTTAAACTCTTTTAATT+AGG | - | chr1.4:59516801-59516820 | MS.gene40010:CDS | 20.0% |
| !!! | TTGTTTTAAATTGTGTTTCA+GGG | - | chr1.4:59515033-59515052 | MS.gene40010:intron | 20.0% |
| ! | AAATCAACAAATGCATTCAA+TGG | + | chr1.4:59514929-59514948 | None:intergenic | 25.0% |
| ! | AATCAACAAATGCATTCAAT+GGG | + | chr1.4:59514928-59514947 | None:intergenic | 25.0% |
| ! | AATTTATACAAGAACTTGTG+GGG | + | chr1.4:59515957-59515976 | None:intergenic | 25.0% |
| ! | ACATGTTTGCAAAAAAACAT+TGG | - | chr1.4:59515637-59515656 | MS.gene40010:intron | 25.0% |
| ! | ATACAAATTTACCAACGATT+TGG | + | chr1.4:59516858-59516877 | None:intergenic | 25.0% |
| ! | ATGTTAATTGGTATAAAGAC+TGG | - | chr1.4:59515867-59515886 | MS.gene40010:CDS | 25.0% |
| ! | ATTGCTGCATGTTATATATT+GGG | - | chr1.4:59516259-59516278 | MS.gene40010:intron | 25.0% |
| ! | CAATTTATACAAGAACTTGT+GGG | + | chr1.4:59515958-59515977 | None:intergenic | 25.0% |
| ! | CCTTAAATAACTCAAAGTAA+TGG | - | chr1.4:59514865-59514884 | MS.gene40010:intron | 25.0% |
| ! | GAAGTTTAATAACATGCATA+TGG | - | chr1.4:59516182-59516201 | MS.gene40010:intron | 25.0% |
| ! | TACAAATTTACCAACGATTT+GGG | + | chr1.4:59516857-59516876 | None:intergenic | 25.0% |
| ! | TATAAAAGTTGAAGATATCG+AGG | - | chr1.4:59515366-59515385 | MS.gene40010:intron | 25.0% |
| ! | TCAATTTATACAAGAACTTG+TGG | + | chr1.4:59515959-59515978 | None:intergenic | 25.0% |
| ! | TTATACCAATTAACATTTGG+AGG | + | chr1.4:59515863-59515882 | None:intergenic | 25.0% |
| !! | AATACTTCAGTTGATATCAT+AGG | + | chr1.4:59516933-59516952 | None:intergenic | 25.0% |
| !! | CCATTACTTTGAGTTATTTA+AGG | + | chr1.4:59514868-59514887 | None:intergenic | 25.0% |
| !! | TCTGTTTAAAATTCATTGCA+AGG | - | chr1.4:59516495-59516514 | MS.gene40010:intron | 25.0% |
| !!! | AAACGTTTGATTCGTTTTTT+GGG | - | chr1.4:59514800-59514819 | MS.gene40010:CDS | 25.0% |
| !!! | TGTTTTAAATTGTGTTTCAG+GGG | - | chr1.4:59515034-59515053 | MS.gene40010:intron | 25.0% |
| !!! | TTGAATGCATTTGTTGATTT+TGG | - | chr1.4:59514929-59514948 | MS.gene40010:intron | 25.0% |
| AAAAAGTGAAAACGAGTTCT+TGG | + | chr1.4:59515925-59515944 | None:intergenic | 30.0% | |
| AAATCAAGCTTAGTGACTTT+GGG | - | chr1.4:59516759-59516778 | MS.gene40010:CDS | 30.0% | |
| AATTAGGATGCTGTATATGA+TGG | - | chr1.4:59516817-59516836 | MS.gene40010:CDS | 30.0% | |
| ACTTGTGTTTAATGTGTTTG+TGG | - | chr1.4:59516140-59516159 | MS.gene40010:intron | 30.0% | |
| ATAGTCTAACTTCAAAACCA+AGG | + | chr1.4:59514843-59514862 | None:intergenic | 30.0% | |
| ATCACAGCTGAAAAAAAGAA+AGG | + | chr1.4:59516962-59516981 | None:intergenic | 30.0% | |
| ATTGGAATCGAAAATGTTCT+AGG | + | chr1.4:59515169-59515188 | None:intergenic | 30.0% | |
| CACTAAGACAGTTATCTTTA+AGG | + | chr1.4:59515105-59515124 | None:intergenic | 30.0% | |
| CATTGCTGCATGTTATATAT+TGG | - | chr1.4:59516258-59516277 | MS.gene40010:intron | 30.0% | |
| CGAAGTTCAATATCTATATC+AGG | + | chr1.4:59515508-59515527 | None:intergenic | 30.0% | |
| TACTGGGATTAACTCAAAAT+GGG | - | chr1.4:59516307-59516326 | MS.gene40010:intron | 30.0% | |
| TCACAGCTGAAAAAAAGAAA+GGG | + | chr1.4:59516961-59516980 | None:intergenic | 30.0% | |
| TGATTCTAATTCGTTATCGA+GGG | - | chr1.4:59514439-59514458 | MS.gene40010:intron | 30.0% | |
| TTACATACTTATGCTTCTGT+GGG | - | chr1.4:59514591-59514610 | MS.gene40010:CDS | 30.0% | |
| TTACTGGGATTAACTCAAAA+TGG | - | chr1.4:59516306-59516325 | MS.gene40010:intron | 30.0% | |
| TTATGCCTCCAAATGTTAAT+TGG | - | chr1.4:59515855-59515874 | MS.gene40010:CDS | 30.0% | |
| TTCTGAACATTGTTGGAAAA+GGG | - | chr1.4:59514690-59514709 | MS.gene40010:CDS | 30.0% | |
| TTGGAATCGAAAATGTTCTA+GGG | + | chr1.4:59515168-59515187 | None:intergenic | 30.0% | |
| ! | AATTTTTGCGGCTCATAAAT+TGG | - | chr1.4:59515273-59515292 | MS.gene40010:intron | 30.0% |
| ! | AGATGATGATGATGAATTTG+AGG | + | chr1.4:59513967-59513986 | None:intergenic | 30.0% |
| ! | AGTGAATGGTGAAATTTTTG+CGG | - | chr1.4:59515261-59515280 | MS.gene40010:intron | 30.0% |
| ! | CGTATGCTTATGCTTTATTA+AGG | - | chr1.4:59516698-59516717 | MS.gene40010:intron | 30.0% |
| ! | GCTTTTTGAATTAACGCTTT+TGG | - | chr1.4:59514253-59514272 | MS.gene40010:intron | 30.0% |
| ! | GGAATGATAGGAATTTTTAC+TGG | - | chr1.4:59514560-59514579 | MS.gene40010:intron | 30.0% |
| !! | AGGTTCATAGTCATTTTGAT+AGG | - | chr1.4:59514300-59514319 | MS.gene40010:intron | 30.0% |
| !!! | AACGTTTGATTCGTTTTTTG+GGG | - | chr1.4:59514801-59514820 | MS.gene40010:CDS | 30.0% |
| !!! | ATGGAACTTTTTTGTGACAA+TGG | - | chr1.4:59514984-59515003 | MS.gene40010:intron | 30.0% |
| !!! | CAAACGTTTGATTCGTTTTT+TGG | - | chr1.4:59514799-59514818 | MS.gene40010:CDS | 30.0% |
| !!! | CGATTTATTTTTACCCTGAT+GGG | - | chr1.4:59514156-59514175 | MS.gene40010:intron | 30.0% |
| !!! | GATGTGAATTTTGAAGTGAA+TGG | - | chr1.4:59515247-59515266 | MS.gene40010:intron | 30.0% |
| !!! | TGCATTTGTTGATTTTGGTT+TGG | - | chr1.4:59514934-59514953 | MS.gene40010:intron | 30.0% |
| AAAAGCTCAGTCAAAACAGA+TGG | + | chr1.4:59517022-59517041 | None:intergenic | 35.0% | |
| AAACAGGAACCAAGCAATAA+AGG | + | chr1.4:59516020-59516039 | None:intergenic | 35.0% | |
| AAAGCTCAGTCAAAACAGAT+GGG | + | chr1.4:59517021-59517040 | None:intergenic | 35.0% | |
| AGATGTTGCAATAAATACCG+TGG | - | chr1.4:59516421-59516440 | MS.gene40010:intron | 35.0% | |
| AGATTGAGAGATGTGAGATT+TGG | - | chr1.4:59515899-59515918 | MS.gene40010:CDS | 35.0% | |
| ATAGCAACATACAGACTTTC+AGG | + | chr1.4:59516630-59516649 | None:intergenic | 35.0% | |
| ATATACTCGCAAATTGCAAC+TGG | + | chr1.4:59515709-59515728 | None:intergenic | 35.0% | |
| ATATCAGGACAGAGACAAAA+AGG | + | chr1.4:59515493-59515512 | None:intergenic | 35.0% | |
| ATGTGCAATATTAGGGGAAT+TGG | - | chr1.4:59516592-59516611 | MS.gene40010:intron | 35.0% | |
| CAAATCAAGCTTAGTGACTT+TGG | - | chr1.4:59516758-59516777 | MS.gene40010:CDS | 35.0% | |
| CATTCCAAGTTACCAACATT+GGG | + | chr1.4:59514546-59514565 | None:intergenic | 35.0% | |
| CCAATAGTAGAAGGTGATAT+TGG | + | chr1.4:59515187-59515206 | None:intergenic | 35.0% | |
| CCAATATCACCTTCTACTAT+TGG | - | chr1.4:59515184-59515203 | MS.gene40010:intron | 35.0% | |
| CCACGATATTTCAACGTATA+AGG | + | chr1.4:59514341-59514360 | None:intergenic | 35.0% | |
| CCTTATACGTTGAAATATCG+TGG | - | chr1.4:59514338-59514357 | MS.gene40010:intron | 35.0% | |
| CTCACATAGGTTCAAGATAA+CGG | - | chr1.4:59514055-59514074 | MS.gene40010:CDS | 35.0% | |
| CTGATTCTAATTCGTTATCG+AGG | - | chr1.4:59514438-59514457 | MS.gene40010:intron | 35.0% | |
| CTTAGTGTTAATTGTAGCGT+TGG | - | chr1.4:59515118-59515137 | MS.gene40010:intron | 35.0% | |
| GTTACATACTTATGCTTCTG+TGG | - | chr1.4:59514590-59514609 | MS.gene40010:CDS | 35.0% | |
| TATTCACTCTCAAAAGGGAT+TGG | - | chr1.4:59514080-59514099 | MS.gene40010:CDS | 35.0% | |
| TCACATAGGTTCAAGATAAC+GGG | - | chr1.4:59514056-59514075 | MS.gene40010:CDS | 35.0% | |
| TCATTCCAAGTTACCAACAT+TGG | + | chr1.4:59514547-59514566 | None:intergenic | 35.0% | |
| TCTCAAAAGGGATTGGAATT+GGG | - | chr1.4:59514087-59514106 | MS.gene40010:CDS | 35.0% | |
| TCTGAACATTGTTGGAAAAG+GGG | - | chr1.4:59514691-59514710 | MS.gene40010:CDS | 35.0% | |
| TGTGCAATATTAGGGGAATT+GGG | - | chr1.4:59516593-59516612 | MS.gene40010:intron | 35.0% | |
| TGTGTGTTCTGATCTTTCAT+AGG | + | chr1.4:59515343-59515362 | None:intergenic | 35.0% | |
| TTCTTGAATTGACCCAATGT+TGG | - | chr1.4:59514531-59514550 | MS.gene40010:intron | 35.0% | |
| TTGCGAGTATATTTGACTGT+TGG | - | chr1.4:59515717-59515736 | MS.gene40010:CDS | 35.0% | |
| ! | AACATTTGGAGGCATAAATG+AGG | + | chr1.4:59515852-59515871 | None:intergenic | 35.0% |
| ! | ACATTTGGAGGCATAAATGA+GGG | + | chr1.4:59515851-59515870 | None:intergenic | 35.0% |
| ! | GATGATGATGAATTTGAGGA+TGG | + | chr1.4:59513963-59513982 | None:intergenic | 35.0% |
| ! | GTTCTGAACATTGTTGGAAA+AGG | - | chr1.4:59514689-59514708 | MS.gene40010:CDS | 35.0% |
| ! | TACAGTTTTACCCAAATCGT+TGG | - | chr1.4:59516844-59516863 | MS.gene40010:CDS | 35.0% |
| ! | TGAAGTGTTCTGAACATTGT+TGG | - | chr1.4:59514683-59514702 | MS.gene40010:CDS | 35.0% |
| ! | TTCAGTTGATATCATAGGTC+TGG | + | chr1.4:59516928-59516947 | None:intergenic | 35.0% |
| !! | AAAAGCTGAGCTCTAAAAAC+AGG | + | chr1.4:59515316-59515335 | None:intergenic | 35.0% |
| !! | GAAGAGGTACAGTTTTCTAA+AGG | - | chr1.4:59515006-59515025 | MS.gene40010:intron | 35.0% |
| !! | TAGTCATTTTGATAGGACGT+TGG | - | chr1.4:59514307-59514326 | MS.gene40010:intron | 35.0% |
| !! | TGTTGGTAACTTGGAATGAT+AGG | - | chr1.4:59514548-59514567 | MS.gene40010:intron | 35.0% |
| !!! | ACGTTTGATTCGTTTTTTGG+GGG | - | chr1.4:59514802-59514821 | MS.gene40010:CDS | 35.0% |
| !!! | ATCTGTTTTGACTGAGCTTT+TGG | - | chr1.4:59517021-59517040 | MS.gene40010:CDS | 35.0% |
| !!! | CTTTTTTGTGACAATGGAAG+AGG | - | chr1.4:59514990-59515009 | MS.gene40010:intron | 35.0% |
| !!! | GCGATTTATTTTTACCCTGA+TGG | - | chr1.4:59514155-59514174 | MS.gene40010:intron | 35.0% |
| !!! | GTTTTTAGAGCTCAGCTTTT+TGG | - | chr1.4:59515316-59515335 | MS.gene40010:intron | 35.0% |
| AAAATGGGCAACTACCTTGA+TGG | - | chr1.4:59516322-59516341 | MS.gene40010:intron | 40.0% | |
| AAACTGCAGAAAGTCAAAGG+CGG | + | chr1.4:59516098-59516117 | None:intergenic | 40.0% | |
| AAGGCGGTTTGAAAAACCAA+TGG | + | chr1.4:59516082-59516101 | None:intergenic | 40.0% | |
| AGCATACGATAGTCAACAAC+AGG | + | chr1.4:59516686-59516705 | None:intergenic | 40.0% | |
| AGGAACGAAGCAATACTTGA+TGG | - | chr1.4:59517091-59517110 | MS.gene40010:CDS | 40.0% | |
| AGGGGAATTGGGACATTAAA+AGG | - | chr1.4:59516604-59516623 | MS.gene40010:intron | 40.0% | |
| ATGGCAGTGATGTAAATGGA+AGG | - | chr1.4:59517110-59517129 | MS.gene40010:CDS | 40.0% | |
| CAAAGCTAAAGTTGTAGCCA+CGG | + | chr1.4:59516441-59516460 | None:intergenic | 40.0% | |
| CACATAGGTTCAAGATAACG+GGG | - | chr1.4:59514057-59514076 | MS.gene40010:CDS | 40.0% | |
| CATCAGCCTAAGTCTATCTA+AGG | + | chr1.4:59516381-59516400 | None:intergenic | 40.0% | |
| CGTAAACTGCAGAAAGTCAA+AGG | + | chr1.4:59516101-59516120 | None:intergenic | 40.0% | |
| CTCTCAAAAGGGATTGGAAT+TGG | - | chr1.4:59514086-59514105 | MS.gene40010:CDS | 40.0% | |
| CTGAACATTGTTGGAAAAGG+GGG | - | chr1.4:59514692-59514711 | MS.gene40010:CDS | 40.0% | |
| GCTAGAACAACTCAACAAAC+AGG | + | chr1.4:59516036-59516055 | None:intergenic | 40.0% | |
| GGCTAGATTTACTGAGCATT+CGG | - | chr1.4:59517051-59517070 | MS.gene40010:CDS | 40.0% | |
| GGTATGCCTTAGATAGACTT+AGG | - | chr1.4:59516372-59516391 | MS.gene40010:intron | 40.0% | |
| GGTCTGGATGAGGAATAAAT+AGG | + | chr1.4:59516912-59516931 | None:intergenic | 40.0% | |
| TGAAATATCGTGGTAGCATG+TGG | - | chr1.4:59514348-59514367 | MS.gene40010:intron | 40.0% | |
| TGAACATTGTTGGAAAAGGG+GGG | - | chr1.4:59514693-59514712 | MS.gene40010:CDS | 40.0% | |
| TGATATCATAGGTCTGGATG+AGG | + | chr1.4:59516922-59516941 | None:intergenic | 40.0% | |
| TGTTTGTGAAGGTTCAAGCT+TGG | - | chr1.4:59514465-59514484 | MS.gene40010:intron | 40.0% | |
| TTAAACAGACTGCTTTCAGC+TGG | + | chr1.4:59516484-59516503 | None:intergenic | 40.0% | |
| TTCCAAAAGCTTCCCAAACT+GGG | + | chr1.4:59515212-59515231 | None:intergenic | 40.0% | |
| TTCCATGAACTCAATTCAGC+AGG | + | chr1.4:59514970-59514989 | None:intergenic | 40.0% | |
| TTCCTGCTGAATTGAGTTCA+TGG | - | chr1.4:59514965-59514984 | MS.gene40010:intron | 40.0% | |
| TTTCCAAAAGCTTCCCAAAC+TGG | + | chr1.4:59515213-59515232 | None:intergenic | 40.0% | |
| ! | CTTGATGGCAGTGATGTAAA+TGG | - | chr1.4:59517106-59517125 | MS.gene40010:CDS | 40.0% |
| ! | GAGGTTGTTGATGGAATTGA+GGG | + | chr1.4:59514005-59514024 | None:intergenic | 40.0% |
| ! | GTTTGTTGAGTTGTTCTAGC+TGG | - | chr1.4:59516036-59516055 | MS.gene40010:intron | 40.0% |
| ! | TAACGCTTTTGGATCAGAGT+GGG | - | chr1.4:59514264-59514283 | MS.gene40010:intron | 40.0% |
| ! | TGATGGTTTCGAGTACTTGA+AGG | - | chr1.4:59516988-59517007 | MS.gene40010:CDS | 40.0% |
| ! | TTAACGCTTTTGGATCAGAG+TGG | - | chr1.4:59514263-59514282 | MS.gene40010:intron | 40.0% |
| !! | TTGACCCAATGTTGGTAACT+TGG | - | chr1.4:59514539-59514558 | MS.gene40010:intron | 40.0% |
| !! | TTTGGGAAGCTTTTGGAAAG+TGG | - | chr1.4:59515214-59515233 | MS.gene40010:intron | 40.0% |
| !!! | AACACACCTCTGAGATTTTC+AGG | + | chr1.4:59516521-59516540 | None:intergenic | 40.0% |
| !!! | TTGATTCGTTTTTTGGGGGT+GGG | - | chr1.4:59514806-59514825 | MS.gene40010:CDS | 40.0% |
| !!! | TTTGATTCGTTTTTTGGGGG+TGG | - | chr1.4:59514805-59514824 | MS.gene40010:CDS | 40.0% |
| AACTGGGGACCAATAGTAGA+AGG | + | chr1.4:59515196-59515215 | None:intergenic | 45.0% | |
| ACACCATCAAAGGCTCACAT+AGG | - | chr1.4:59514042-59514061 | MS.gene40010:CDS | 45.0% | |
| AGATTCTTCGCGAAACAACG+AGG | - | chr1.4:59513937-59513956 | MS.gene40010:CDS | 45.0% | |
| ATCGAGGGTAGTGTTTGTGA+AGG | - | chr1.4:59514454-59514473 | MS.gene40010:intron | 45.0% | |
| CAGTGATGTAAATGGAAGGC+GGG | - | chr1.4:59517114-59517133 | MS.gene40010:CDS | 45.0% | |
| CTACTATTGGTCCCCAGTTT+GGG | - | chr1.4:59515197-59515216 | MS.gene40010:intron | 45.0% | |
| CTGACATGCAAGAGCTTACT+GGG | - | chr1.4:59516291-59516310 | MS.gene40010:intron | 45.0% | |
| CTGCTTTCAGCTGGAAACAA+TGG | + | chr1.4:59516475-59516494 | None:intergenic | 45.0% | |
| GAACCTATGTGAGCCTTTGA+TGG | + | chr1.4:59514048-59514067 | None:intergenic | 45.0% | |
| GAGTGAAGGGACTGATGTTA+GGG | - | chr1.4:59514229-59514248 | MS.gene40010:intron | 45.0% | |
| GATGTTGAGGAGGTTGTTGA+TGG | + | chr1.4:59514014-59514033 | None:intergenic | 45.0% | |
| GCAGTGATGTAAATGGAAGG+CGG | - | chr1.4:59517113-59517132 | MS.gene40010:CDS | 45.0% | |
| TCAGCTGTGATGCAAACTGA+TGG | - | chr1.4:59516971-59516990 | MS.gene40010:CDS | 45.0% | |
| TCCAAAAGCTTCCCAAACTG+GGG | + | chr1.4:59515211-59515230 | None:intergenic | 45.0% | |
| TCGATAACCGACACCATCAA+AGG | - | chr1.4:59514032-59514051 | MS.gene40010:CDS | 45.0% | |
| TCGCAAATTGCAACTGGCAA+GGG | + | chr1.4:59515703-59515722 | None:intergenic | 45.0% | |
| TCTACTATTGGTCCCCAGTT+TGG | - | chr1.4:59515196-59515215 | MS.gene40010:intron | 45.0% | |
| TGTGAAGGTTCAAGCTTGGT+GGG | - | chr1.4:59514469-59514488 | MS.gene40010:intron | 45.0% | |
| TTGTGAAGGTTCAAGCTTGG+TGG | - | chr1.4:59514468-59514487 | MS.gene40010:intron | 45.0% | |
| TTTGATAGGACGTTGGAGAG+TGG | - | chr1.4:59514314-59514333 | MS.gene40010:intron | 45.0% | |
| ! | ACGGGGTATTCACTCTCAAA+AGG | - | chr1.4:59514074-59514093 | MS.gene40010:CDS | 45.0% |
| ! | CGGGGTATTCACTCTCAAAA+GGG | - | chr1.4:59514075-59514094 | MS.gene40010:CDS | 45.0% |
| ! | CGTGGCTACAACTTTAGCTT+TGG | - | chr1.4:59516439-59516458 | MS.gene40010:intron | 45.0% |
| ! | CTGAGATTTTCACCGTTGGT+GGG | - | chr1.4:59514123-59514142 | MS.gene40010:intron | 45.0% |
| ! | GGAGGTTGTTGATGGAATTG+AGG | + | chr1.4:59514006-59514025 | None:intergenic | 45.0% |
| ! | GTTGTTGATGGAATTGAGGG+TGG | + | chr1.4:59514002-59514021 | None:intergenic | 45.0% |
| ! | TATCGAGGCTCCTGTTTTCA+AGG | - | chr1.4:59515381-59515400 | MS.gene40010:intron | 45.0% |
| !! | ATGTGAGCCTTTGATGGTGT+CGG | + | chr1.4:59514042-59514061 | None:intergenic | 45.0% |
| !! | ATTGTAGCGTTGGTGTTGTG+AGG | - | chr1.4:59515128-59515147 | MS.gene40010:intron | 45.0% |
| !! | GCATCTGAGATTTTCACCGT+TGG | - | chr1.4:59514119-59514138 | MS.gene40010:intron | 45.0% |
| !! | TCTGAGATTTTCACCGTTGG+TGG | - | chr1.4:59514122-59514141 | MS.gene40010:intron | 45.0% |
| !!! | GACTGAGCTTTTGGAGTATG+TGG | - | chr1.4:59517030-59517049 | MS.gene40010:CDS | 45.0% |
| !!! | TGATTCGTTTTTTGGGGGTG+GGG | - | chr1.4:59514807-59514826 | MS.gene40010:CDS | 45.0% |
| AACTAATGCCAGAAGCAGGC+AGG | + | chr1.4:59515600-59515619 | None:intergenic | 50.0% | |
| ACCCAACTAATGCCAGAAGC+AGG | + | chr1.4:59515604-59515623 | None:intergenic | 50.0% | |
| ATCTGCTAGCAGCAGCTGAT+CGG | - | chr1.4:59516351-59516370 | MS.gene40010:intron | 50.0% | |
| CAAATTGCAACTGGCAAGGG+TGG | + | chr1.4:59515700-59515719 | None:intergenic | 50.0% | |
| CCAGTAAGCTCTTGCATGTC+AGG | + | chr1.4:59516293-59516312 | None:intergenic | 50.0% | |
| CCTGACATGCAAGAGCTTAC+TGG | - | chr1.4:59516290-59516309 | MS.gene40010:intron | 50.0% | |
| CGAGTGAAGGGACTGATGTT+AGG | - | chr1.4:59514228-59514247 | MS.gene40010:intron | 50.0% | |
| CTCGCAAATTGCAACTGGCA+AGG | + | chr1.4:59515704-59515723 | None:intergenic | 50.0% | |
| CTTCGTTCCTATGCTTGCAC+AGG | + | chr1.4:59517081-59517100 | None:intergenic | 50.0% | |
| GAGGCATAAATGAGGGAAGC+GGG | + | chr1.4:59515844-59515863 | None:intergenic | 50.0% | |
| GATGGAATTGAGGGTGGTGA+TGG | + | chr1.4:59513996-59514015 | None:intergenic | 50.0% | |
| GCAAGGCCTGAAAATCTCAG+AGG | - | chr1.4:59516512-59516531 | MS.gene40010:intron | 50.0% | |
| GCCTGCTTCTGGCATTAGTT+GGG | - | chr1.4:59515600-59515619 | MS.gene40010:intron | 50.0% | |
| GTCGGTTATCGATGTTGAGG+AGG | + | chr1.4:59514024-59514043 | None:intergenic | 50.0% | |
| GTTGTGAGGTCACACACAGA+GGG | - | chr1.4:59515142-59515161 | MS.gene40010:intron | 50.0% | |
| TAGCAGATGCTGAGCCATCA+AGG | + | chr1.4:59516339-59516358 | None:intergenic | 50.0% | |
| TGCCTGCTTCTGGCATTAGT+TGG | - | chr1.4:59515599-59515618 | MS.gene40010:intron | 50.0% | |
| TGGATCAGAGTGGGAAAGAG+AGG | - | chr1.4:59514273-59514292 | MS.gene40010:intron | 50.0% | |
| TGTTGGAAAAGGGGGGTGAA+AGG | - | chr1.4:59514700-59514719 | MS.gene40010:CDS | 50.0% | |
| TGTTGTGAGGTCACACACAG+AGG | - | chr1.4:59515141-59515160 | MS.gene40010:intron | 50.0% | |
| TTACCCTGATGGGAAAAGCG+TGG | - | chr1.4:59514166-59514185 | MS.gene40010:intron | 50.0% | |
| ! | GAGTGGGAAAGAGAGGCATA+AGG | - | chr1.4:59514280-59514299 | MS.gene40010:intron | 50.0% |
| ! | GGAGGCATAAATGAGGGAAG+CGG | + | chr1.4:59515845-59515864 | None:intergenic | 50.0% |
| ! | TCCCCAGTTTGGGAAGCTTT+TGG | - | chr1.4:59515207-59515226 | MS.gene40010:intron | 50.0% |
| !! | GGTGTCGGTTATCGATGTTG+AGG | + | chr1.4:59514027-59514046 | None:intergenic | 50.0% |
| ATGCCAGAAGCAGGCAGGAT+TGG | + | chr1.4:59515595-59515614 | None:intergenic | 55.0% | |
| CGGACTTCCTGTGCAAGCAT+AGG | - | chr1.4:59517071-59517090 | MS.gene40010:CDS | 55.0% | |
| GGCAGGATTGGGCACTAAGT+CGG | + | chr1.4:59515583-59515602 | None:intergenic | 55.0% | |
| TCATCGCGCTTGCGAGTGAA+GGG | - | chr1.4:59514216-59514235 | MS.gene40010:intron | 55.0% | |
| TGCCAGAAGCAGGCAGGATT+GGG | + | chr1.4:59515594-59515613 | None:intergenic | 55.0% | |
| TTCATCGCGCTTGCGAGTGA+AGG | - | chr1.4:59514215-59514234 | MS.gene40010:intron | 55.0% | |
| ! | CACCGTTGGTGGGTACGAAT+GGG | - | chr1.4:59514133-59514152 | MS.gene40010:intron | 55.0% |
| ! | CCTCCACGCTTTTCCCATCA+GGG | + | chr1.4:59514172-59514191 | None:intergenic | 55.0% |
| ! | TCACCGTTGGTGGGTACGAA+TGG | - | chr1.4:59514132-59514151 | MS.gene40010:intron | 55.0% |
| ! | TCCTCCACGCTTTTCCCATC+AGG | + | chr1.4:59514173-59514192 | None:intergenic | 55.0% |
| !!! | TCGTTTTTTGGGGGTGGGGT+GGG | - | chr1.4:59514811-59514830 | MS.gene40010:CDS | 55.0% |
| !!! | TTCGTTTTTTGGGGGTGGGG+TGG | - | chr1.4:59514810-59514829 | MS.gene40010:CDS | 55.0% |
| CGCCCATTCGTACCCACCAA+CGG | + | chr1.4:59514138-59514157 | None:intergenic | 60.0% | |
| TGCCCAATCCTGCCTGCTTC+TGG | - | chr1.4:59515589-59515608 | MS.gene40010:intron | 60.0% | |
| ! | CCCTGATGGGAAAAGCGTGG+AGG | - | chr1.4:59514169-59514188 | MS.gene40010:intron | 60.0% |
| TTTGGGGGTGGGGTGGGAGA+GGG | - | chr1.4:59514817-59514836 | MS.gene40010:CDS | 65.0% | |
| !! | TTTTGGGGGTGGGGTGGGAG+AGG | - | chr1.4:59514816-59514835 | MS.gene40010:CDS | 65.0% |
| GGTGGGGTGGGAGAGGGCCT+TGG | - | chr1.4:59514823-59514842 | MS.gene40010:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59513930 | 59517165 | 59513930 | ID=MS.gene40010 |
| chr1.4 | mRNA | 59513930 | 59517165 | 59513930 | ID=MS.gene40010.t1;Parent=MS.gene40010 |
| chr1.4 | exon | 59516726 | 59517165 | 59516726 | ID=MS.gene40010.t1.exon1;Parent=MS.gene40010.t1 |
| chr1.4 | CDS | 59516726 | 59517165 | 59516726 | ID=cds.MS.gene40010.t1;Parent=MS.gene40010.t1 |
| chr1.4 | exon | 59515693 | 59516041 | 59515693 | ID=MS.gene40010.t1.exon2;Parent=MS.gene40010.t1 |
| chr1.4 | CDS | 59515693 | 59516041 | 59515693 | ID=cds.MS.gene40010.t1;Parent=MS.gene40010.t1 |
| chr1.4 | exon | 59514562 | 59514838 | 59514562 | ID=MS.gene40010.t1.exon3;Parent=MS.gene40010.t1 |
| chr1.4 | CDS | 59514562 | 59514838 | 59514562 | ID=cds.MS.gene40010.t1;Parent=MS.gene40010.t1 |
| chr1.4 | exon | 59513930 | 59514120 | 59513930 | ID=MS.gene40010.t1.exon4;Parent=MS.gene40010.t1 |
| chr1.4 | CDS | 59513930 | 59514120 | 59513930 | ID=cds.MS.gene40010.t1;Parent=MS.gene40010.t1 |
| Gene Sequence |
| Protein sequence |
