Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41016.t1 | XP_003590316.1 | 99.2 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 6.90E-129 | 469.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41016.t1 | B7FHS4 | 99.2 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 5.0e-129 | 469.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene41016 | -0.800884 | 1.17E-48 | -1.69E-46 |
| MS.gene050818 | MS.gene41016 | 0.814972 | 1.17E-51 | -1.69E-46 |
| MS.gene050864 | MS.gene41016 | 0.846233 | 2.47E-59 | -1.69E-46 |
| MS.gene052494 | MS.gene41016 | 0.870402 | 1.50E-66 | -1.69E-46 |
| MS.gene053097 | MS.gene41016 | 0.81457 | 1.44E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene41016 | -0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene41016 | -0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene056618 | MS.gene41016 | 0.810368 | 1.19E-50 | -1.69E-46 |
| MS.gene059545 | MS.gene41016 | 0.813528 | 2.45E-51 | -1.69E-46 |
| MS.gene05960 | MS.gene41016 | 0.826714 | 2.33E-54 | -1.69E-46 |
| MS.gene06042 | MS.gene41016 | 0.845247 | 4.57E-59 | -1.69E-46 |
| MS.gene061044 | MS.gene41016 | 0.821929 | 3.11E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41016.t1 | MTR_1g056390 | 99.167 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 3.68e-177 | 486 |
| MS.gene41016.t1 | MTR_4g068290 | 60.435 | 230 | 81 | 6 | 3 | 232 | 20 | 239 | 4.14e-92 | 271 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41016.t1 | AT3G44150 | 67.089 | 237 | 72 | 3 | 5 | 240 | 15 | 246 | 2.56e-116 | 332 |
| MS.gene41016.t1 | AT3G11800 | 61.570 | 242 | 86 | 4 | 6 | 240 | 5 | 246 | 7.97e-102 | 296 |
| MS.gene41016.t1 | AT2G15910 | 55.556 | 225 | 85 | 4 | 21 | 233 | 142 | 363 | 9.99e-84 | 254 |
| MS.gene41016.t1 | AT3G48630 | 52.381 | 63 | 30 | 0 | 107 | 169 | 2 | 64 | 1.43e-15 | 71.2 |
Find 53 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTATATGGTTGCATTTGC+TGG | 0.262227 | 1.3:+41355562 | MS.gene41016:CDS |
| TCTAGTTGCAAGACCCATTC+AGG | 0.301444 | 1.3:+41355919 | MS.gene41016:CDS |
| TCAAAAGCTGTCTGTCTTAA+CGG | 0.317183 | 1.3:+41355874 | MS.gene41016:CDS |
| AACTTCTCAGATTTGAATAA+AGG | 0.324415 | 1.3:-41356056 | None:intergenic |
| GCAGGCTGCAAAATTTGTTC+TGG | 0.348048 | 1.3:+41355818 | MS.gene41016:CDS |
| AAACAAAGAGATCTGAGAAT+TGG | 0.348925 | 1.3:-41354470 | None:intergenic |
| GGAACTGTGGATTGCAGCTT+AGG | 0.380580 | 1.3:+41355940 | MS.gene41016:CDS |
| CCAGGACTCGTATGGCTATA+TGG | 0.380916 | 1.3:+41355549 | MS.gene41016:intron |
| AGAGATCTGAGAATTGGAAT+TGG | 0.391834 | 1.3:-41354464 | None:intergenic |
| ACGTGAATCCGTCGGATCTC+TGG | 0.396037 | 1.3:-41354351 | None:intergenic |
| TCTCCTTACGAGAGTAAAAC+TGG | 0.396842 | 1.3:-41355644 | None:intergenic |
| GATCTCTTTGTTTAGACCTA+AGG | 0.399270 | 1.3:+41354480 | MS.gene41016:CDS |
| GGTATACAATTAGCATTCTC+TGG | 0.422113 | 1.3:+41355961 | MS.gene41016:CDS |
| CGTGAGTGCCGCCGTTAGTA+AGG | 0.437429 | 1.3:-41354257 | None:intergenic |
| CGACGGATTCACGTTGGGAT+TGG | 0.441401 | 1.3:+41354360 | MS.gene41016:CDS |
| TGCAATCCACAGTTCCTGAA+TGG | 0.448720 | 1.3:-41355933 | None:intergenic |
| AAAGGCCGTAGAGCGAATAC+TGG | 0.466757 | 1.3:-41356038 | None:intergenic |
| GCAGGTTCTTGAATTTAAGA+AGG | 0.472061 | 1.3:+41355795 | MS.gene41016:intron |
| GCAATCCACAGTTCCTGAAT+GGG | 0.474537 | 1.3:-41355932 | None:intergenic |
| TTCTTGAATTTAAGAAGGGC+AGG | 0.475638 | 1.3:+41355800 | MS.gene41016:CDS |
| AAATACTTTGTTTGTGTCGC+CGG | 0.480152 | 1.3:-41354305 | None:intergenic |
| AGCTGTCTGTCTTAACGGTC+AGG | 0.480537 | 1.3:+41355879 | MS.gene41016:CDS |
| ACCTATCAGCTCTTAACTCT+TGG | 0.485780 | 1.3:+41355995 | MS.gene41016:CDS |
| AAAGAAACGAACCGCGACGA+AGG | 0.485863 | 1.3:-41354539 | None:intergenic |
| AGATCCGACGGATTCACGTT+GGG | 0.494461 | 1.3:+41354355 | MS.gene41016:CDS |
| GGGATTGGCGTTCGCTTCGA+AGG | 0.508869 | 1.3:+41354375 | MS.gene41016:CDS |
| AACGAGATCTCATCGACCTT+AGG | 0.518253 | 1.3:-41354496 | None:intergenic |
| AATTTGTTCTGGAAAAGAGA+TGG | 0.524965 | 1.3:+41355829 | MS.gene41016:CDS |
| ATTTGTTCTGGAAAAGAGAT+GGG | 0.526774 | 1.3:+41355830 | MS.gene41016:CDS |
| TCGTTGTTCCAGGACTCGTA+TGG | 0.538029 | 1.3:+41355541 | MS.gene41016:intron |
| GAGCCATTTGCAATAAAAGC+AGG | 0.539452 | 1.3:-41355610 | None:intergenic |
| CAGGTTCTTGAATTTAAGAA+GGG | 0.554852 | 1.3:+41355796 | MS.gene41016:intron |
| ATATGGTTGCATTTGCTGGT+CGG | 0.559957 | 1.3:+41355566 | MS.gene41016:CDS |
| TGGACGCGTGTGTCTGTGCA+AGG | 0.560053 | 1.3:-41354331 | None:intergenic |
| TGGGTCTTGCAACTAGAAGT+TGG | 0.561016 | 1.3:-41355913 | None:intergenic |
| CTTACTAACGGCGGCACTCA+CGG | 0.567627 | 1.3:+41354258 | MS.gene41016:CDS |
| CTTCGCCAGTATTCGCTCTA+CGG | 0.577552 | 1.3:+41356033 | MS.gene41016:CDS |
| ACCAAGAGTTAAGAGCTGAT+AGG | 0.587698 | 1.3:-41355996 | None:intergenic |
| ATTTGCAATAAAAGCAGGAG+GGG | 0.604175 | 1.3:-41355605 | None:intergenic |
| GGCGGTTATCACCTTACTAA+CGG | 0.609250 | 1.3:+41354246 | MS.gene41016:CDS |
| TAGTAAGGTGATAACCGCCA+TGG | 0.618677 | 1.3:-41354242 | None:intergenic |
| CAAGACCCATTCAGGAACTG+TGG | 0.625926 | 1.3:+41355927 | MS.gene41016:CDS |
| CCATTTGCAATAAAAGCAGG+AGG | 0.635505 | 1.3:-41355607 | None:intergenic |
| CGTAGAGCGAATACTGGCGA+AGG | 0.636590 | 1.3:-41356032 | None:intergenic |
| GAGATCCGACGGATTCACGT+TGG | 0.648636 | 1.3:+41354354 | MS.gene41016:CDS |
| TTTCTAGCTTCAGCATACGC+CGG | 0.651746 | 1.3:+41354286 | MS.gene41016:CDS |
| CAATCCCAACGTGAATCCGT+CGG | 0.652871 | 1.3:-41354359 | None:intergenic |
| CATTTGCAATAAAAGCAGGA+GGG | 0.666708 | 1.3:-41355606 | None:intergenic |
| ACACGCGTCCAGAGATCCGA+CGG | 0.668735 | 1.3:+41354343 | MS.gene41016:CDS |
| TAATTCTTCTTCCTTCGTCG+CGG | 0.682591 | 1.3:+41354528 | MS.gene41016:CDS |
| AGCGAGAGTCTAGAATCACA+CGG | 0.714759 | 1.3:-41354439 | None:intergenic |
| GGTTATCACCTTACTAACGG+CGG | 0.780521 | 1.3:+41354249 | MS.gene41016:CDS |
| ACTAACGGCGGCACTCACGG+CGG | 0.788038 | 1.3:+41354261 | MS.gene41016:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATTGAATTCAATTA+GGG | + | chr1.3:41354613-41354632 | MS.gene41016:intron | 10.0% |
| !! | TTTAATAATTGAATTCAATT+AGG | + | chr1.3:41354612-41354631 | MS.gene41016:intron | 10.0% |
| !!! | CTTTTTTTAGTTTTTAATTT+TGG | + | chr1.3:41355096-41355115 | MS.gene41016:intron | 10.0% |
| !! | TGAGTTATTTAATTGAAAAT+AGG | + | chr1.3:41355129-41355148 | MS.gene41016:intron | 15.0% |
| !!! | TAGTTTATTTGATAATTAAC+TGG | + | chr1.3:41354681-41354700 | MS.gene41016:intron | 15.0% |
| !! | AATTGAGTTAGATAAAGATT+CGG | - | chr1.3:41355302-41355321 | None:intergenic | 20.0% |
| !! | TATACAAATATGTACTTCTT+TGG | - | chr1.3:41355396-41355415 | None:intergenic | 20.0% |
| !! | TTAATTGAAAATAGGAGTTA+GGG | + | chr1.3:41355137-41355156 | MS.gene41016:intron | 20.0% |
| !! | TTTAATTGAAAATAGGAGTT+AGG | + | chr1.3:41355136-41355155 | MS.gene41016:intron | 20.0% |
| !!! | ATTGAGAAATTTTTTTAACC+AGG | - | chr1.3:41355676-41355695 | None:intergenic | 20.0% |
| !!! | ATTTACAATACAAGTTTTGT+AGG | + | chr1.3:41355232-41355251 | MS.gene41016:intron | 20.0% |
| ! | AACCCTAATTTATTGTACTT+TGG | + | chr1.3:41354716-41354735 | MS.gene41016:intron | 25.0% |
| ! | AACTTCTCAGATTTGAATAA+AGG | - | chr1.3:41356059-41356078 | None:intergenic | 25.0% |
| ! | ACCCAAAGTACAATAAATTA+GGG | - | chr1.3:41354721-41354740 | None:intergenic | 25.0% |
| ! | ACCCTAATTTATTGTACTTT+GGG | + | chr1.3:41354717-41354736 | MS.gene41016:intron | 25.0% |
| ! | AGTACAATAAATTAGGGTTT+AGG | - | chr1.3:41354715-41354734 | None:intergenic | 25.0% |
| ! | ATGATTACAACTACAACAAA+TGG | - | chr1.3:41355746-41355765 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAAGAGAAGAA+AGG | - | chr1.3:41354568-41354587 | None:intergenic | 25.0% |
| ! | TACCCAAAGTACAATAAATT+AGG | - | chr1.3:41354722-41354741 | None:intergenic | 25.0% |
| !! | CTTCTTTGGTTTATAAACTA+AGG | - | chr1.3:41355382-41355401 | None:intergenic | 25.0% |
| !!! | ATCTTTTGATTAGTTTGTGT+GGG | + | chr1.3:41355506-41355525 | MS.gene41016:intron | 25.0% |
| !!! | ATTTTCGGGTATATCATATA+TGG | + | chr1.3:41354842-41354861 | MS.gene41016:intron | 25.0% |
| !!! | GTTTTAATGATGGACATTTT+CGG | + | chr1.3:41354827-41354846 | MS.gene41016:intron | 25.0% |
| !!! | TATCTTTTGATTAGTTTGTG+TGG | + | chr1.3:41355505-41355524 | MS.gene41016:intron | 25.0% |
| !!! | TTTTAATGATGGACATTTTC+GGG | + | chr1.3:41354828-41354847 | MS.gene41016:intron | 25.0% |
| AAAATAGGAGTTAGGGAATT+TGG | + | chr1.3:41355144-41355163 | MS.gene41016:intron | 30.0% | |
| AAACAAAGAGATCTGAGAAT+TGG | - | chr1.3:41354473-41354492 | None:intergenic | 30.0% | |
| AAAGCAAAAATTGACGAAAC+TGG | - | chr1.3:41355479-41355498 | None:intergenic | 30.0% | |
| AGTTTACAACACAAAAACGA+GGG | + | chr1.3:41355190-41355209 | MS.gene41016:intron | 30.0% | |
| CAGGTTCTTGAATTTAAGAA+GGG | + | chr1.3:41355796-41355815 | MS.gene41016:intron | 30.0% | |
| CTAATTAACTGCGAAATTTC+CGG | + | chr1.3:41354779-41354798 | MS.gene41016:intron | 30.0% | |
| GTTGTATAATCTAGAAGAAC+TGG | + | chr1.3:41354752-41354771 | MS.gene41016:intron | 30.0% | |
| TAGTTTACAACACAAAAACG+AGG | + | chr1.3:41355189-41355208 | MS.gene41016:intron | 30.0% | |
| TTGTTAAATAGAAGCTAGAG+TGG | + | chr1.3:41354923-41354942 | MS.gene41016:intron | 30.0% | |
| ! | GATCAAAGTCTCTATGTTTT+GGG | + | chr1.3:41354864-41354883 | MS.gene41016:intron | 30.0% |
| !! | AATTTGTTCTGGAAAAGAGA+TGG | + | chr1.3:41355829-41355848 | MS.gene41016:CDS | 30.0% |
| !! | ATTTGTTCTGGAAAAGAGAT+GGG | + | chr1.3:41355830-41355849 | MS.gene41016:CDS | 30.0% |
| AAACCTTTCGTGCTCAATTA+CGG | - | chr1.3:41355422-41355441 | None:intergenic | 35.0% | |
| AGAGATCTGAGAATTGGAAT+TGG | - | chr1.3:41354467-41354486 | None:intergenic | 35.0% | |
| ATTGCAGATAGTGTCAATGT+CGG | - | chr1.3:41355068-41355087 | None:intergenic | 35.0% | |
| ATTTGCAATAAAAGCAGGAG+GGG | - | chr1.3:41355608-41355627 | None:intergenic | 35.0% | |
| CATTTGCAATAAAAGCAGGA+GGG | - | chr1.3:41355609-41355628 | None:intergenic | 35.0% | |
| GCAGGTTCTTGAATTTAAGA+AGG | + | chr1.3:41355795-41355814 | MS.gene41016:intron | 35.0% | |
| GGTATACAATTAGCATTCTC+TGG | + | chr1.3:41355961-41355980 | MS.gene41016:CDS | 35.0% | |
| TCAAAAGCTGTCTGTCTTAA+CGG | + | chr1.3:41355874-41355893 | MS.gene41016:CDS | 35.0% | |
| TCCAGTAAAAATGAGGTTTC+CGG | - | chr1.3:41354801-41354820 | None:intergenic | 35.0% | |
| TCTTAAATTCAAGAACCTGC+AGG | - | chr1.3:41355795-41355814 | None:intergenic | 35.0% | |
| TGCAGGAGTAAGATTTCAAA+TGG | - | chr1.3:41355778-41355797 | None:intergenic | 35.0% | |
| TTCTTGAATTTAAGAAGGGC+AGG | + | chr1.3:41355800-41355819 | MS.gene41016:CDS | 35.0% | |
| TTTCCTAGCAAGTGGATAAT+GGG | - | chr1.3:41355352-41355371 | None:intergenic | 35.0% | |
| ! | AAATACTTTGTTTGTGTCGC+CGG | - | chr1.3:41354308-41354327 | None:intergenic | 35.0% |
| ! | ATTTGAAATCTTACTCCTGC+AGG | + | chr1.3:41355777-41355796 | MS.gene41016:intron | 35.0% |
| ! | GATCTCTTTGTTTAGACCTA+AGG | + | chr1.3:41354480-41354499 | MS.gene41016:CDS | 35.0% |
| ! | GGATCAAAGTCTCTATGTTT+TGG | + | chr1.3:41354863-41354882 | MS.gene41016:intron | 35.0% |
| !! | ACCTCATTTTTACTGGACAT+TGG | + | chr1.3:41354804-41354823 | MS.gene41016:intron | 35.0% |
| !! | CCTCATTTTTACTGGACATT+GGG | + | chr1.3:41354805-41354824 | MS.gene41016:intron | 35.0% |
| !! | TGGACATTGGGTTTTAATGA+TGG | + | chr1.3:41354817-41354836 | MS.gene41016:intron | 35.0% |
| !!! | AGACAGCTTTTGAGTTTTTC+GGG | - | chr1.3:41355867-41355886 | None:intergenic | 35.0% |
| !!! | CAGACAGCTTTTGAGTTTTT+CGG | - | chr1.3:41355868-41355887 | None:intergenic | 35.0% |
| ACCAAGAGTTAAGAGCTGAT+AGG | - | chr1.3:41355999-41356018 | None:intergenic | 40.0% | |
| ACCTATCAGCTCTTAACTCT+TGG | + | chr1.3:41355995-41356014 | MS.gene41016:CDS | 40.0% | |
| ATTCCCATTATCCACTTGCT+AGG | + | chr1.3:41355346-41355365 | MS.gene41016:intron | 40.0% | |
| CAAATTCCACTGTGCTATAG+CGG | - | chr1.3:41354956-41354975 | None:intergenic | 40.0% | |
| CCATTTGCAATAAAAGCAGG+AGG | - | chr1.3:41355610-41355629 | None:intergenic | 40.0% | |
| CCCAATGTCCAGTAAAAATG+AGG | - | chr1.3:41354808-41354827 | None:intergenic | 40.0% | |
| CTTTCCTAGCAAGTGGATAA+TGG | - | chr1.3:41355353-41355372 | None:intergenic | 40.0% | |
| GAGCCATTTGCAATAAAAGC+AGG | - | chr1.3:41355613-41355632 | None:intergenic | 40.0% | |
| TAATTCTTCTTCCTTCGTCG+CGG | + | chr1.3:41354528-41354547 | MS.gene41016:CDS | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | + | chr1.3:41355007-41355026 | MS.gene41016:intron | 40.0% | |
| TCTCCTTACGAGAGTAAAAC+TGG | - | chr1.3:41355647-41355666 | None:intergenic | 40.0% | |
| ! | ATATGGTTGCATTTGCTGGT+CGG | + | chr1.3:41355566-41355585 | MS.gene41016:CDS | 40.0% |
| ! | CATTATCCACTTGCTAGGAA+AGG | + | chr1.3:41355351-41355370 | MS.gene41016:intron | 40.0% |
| ! | TCTTTGGATTAGACTTGTCC+CGG | + | chr1.3:41355023-41355042 | MS.gene41016:intron | 40.0% |
| ! | TGACCAGTTTTACTCTCGTA+AGG | + | chr1.3:41355641-41355660 | MS.gene41016:intron | 40.0% |
| !! | CCTCCTGCTTTTATTGCAAA+TGG | + | chr1.3:41355607-41355626 | MS.gene41016:CDS | 40.0% |
| !! | TCCGGAAACCTCATTTTTAC+TGG | + | chr1.3:41354797-41354816 | MS.gene41016:intron | 40.0% |
| !!! | CTCGTAAGGAGATTTTTTCC+TGG | + | chr1.3:41355655-41355674 | MS.gene41016:intron | 40.0% |
| AACGAGATCTCATCGACCTT+AGG | - | chr1.3:41354499-41354518 | None:intergenic | 45.0% | |
| CGCTATAGCACAGTGGAATT+TGG | + | chr1.3:41354954-41354973 | MS.gene41016:intron | 45.0% | |
| GCAATCCACAGTTCCTGAAT+GGG | - | chr1.3:41355935-41355954 | None:intergenic | 45.0% | |
| GGCGGTTATCACCTTACTAA+CGG | + | chr1.3:41354246-41354265 | MS.gene41016:CDS | 45.0% | |
| GGCTATATGGTTGCATTTGC+TGG | + | chr1.3:41355562-41355581 | MS.gene41016:CDS | 45.0% | |
| GGTTATCACCTTACTAACGG+CGG | + | chr1.3:41354249-41354268 | MS.gene41016:CDS | 45.0% | |
| GTTCCGTAATTGAGCACGAA+AGG | + | chr1.3:41355416-41355435 | MS.gene41016:intron | 45.0% | |
| TCTAGTTGCAAGACCCATTC+AGG | + | chr1.3:41355919-41355938 | MS.gene41016:CDS | 45.0% | |
| TGCAATCCACAGTTCCTGAA+TGG | - | chr1.3:41355936-41355955 | None:intergenic | 45.0% | |
| TGGGTCTTGCAACTAGAAGT+TGG | - | chr1.3:41355916-41355935 | None:intergenic | 45.0% | |
| ! | AGCGAGAGTCTAGAATCACA+CGG | - | chr1.3:41354442-41354461 | None:intergenic | 45.0% |
| ! | GCAGGCTGCAAAATTTGTTC+TGG | + | chr1.3:41355818-41355837 | MS.gene41016:CDS | 45.0% |
| !! | GCAAGTGGATAATGGGAATG+TGG | - | chr1.3:41355345-41355364 | None:intergenic | 45.0% |
| !! | TTTCTAGCTTCAGCATACGC+CGG | + | chr1.3:41354286-41354305 | MS.gene41016:CDS | 45.0% |
| AAAGAAACGAACCGCGACGA+AGG | - | chr1.3:41354542-41354561 | None:intergenic | 50.0% | |
| AAAGGCCGTAGAGCGAATAC+TGG | - | chr1.3:41356041-41356060 | None:intergenic | 50.0% | |
| AGCTGTCTGTCTTAACGGTC+AGG | + | chr1.3:41355879-41355898 | MS.gene41016:CDS | 50.0% | |
| CAAGACCCATTCAGGAACTG+TGG | + | chr1.3:41355927-41355946 | MS.gene41016:CDS | 50.0% | |
| CAATCCCAACGTGAATCCGT+CGG | - | chr1.3:41354362-41354381 | None:intergenic | 50.0% | |
| CCAGGACTCGTATGGCTATA+TGG | + | chr1.3:41355549-41355568 | MS.gene41016:intron | 50.0% | |
| CCATATAGCCATACGAGTCC+TGG | - | chr1.3:41355552-41355571 | None:intergenic | 50.0% | |
| CTTCGCCAGTATTCGCTCTA+CGG | + | chr1.3:41356033-41356052 | MS.gene41016:CDS | 50.0% | |
| GATTAGACTTGTCCCGGTGT+CGG | + | chr1.3:41355029-41355048 | MS.gene41016:intron | 50.0% | |
| GCAATGCCTTTCCTAGCAAG+TGG | - | chr1.3:41355360-41355379 | None:intergenic | 50.0% | |
| GTTCTACCGCTATAGCACAG+TGG | + | chr1.3:41354947-41354966 | MS.gene41016:intron | 50.0% | |
| TCGTTGTTCCAGGACTCGTA+TGG | + | chr1.3:41355541-41355560 | MS.gene41016:intron | 50.0% | |
| TGTGTGTTCGTCGTTGTTCC+AGG | + | chr1.3:41355531-41355550 | MS.gene41016:intron | 50.0% | |
| ! | AGATCCGACGGATTCACGTT+GGG | + | chr1.3:41354355-41354374 | MS.gene41016:CDS | 50.0% |
| ! | GGAACTGTGGATTGCAGCTT+AGG | + | chr1.3:41355940-41355959 | MS.gene41016:CDS | 50.0% |
| ACGTGAATCCGTCGGATCTC+TGG | - | chr1.3:41354354-41354373 | None:intergenic | 55.0% | |
| CGTAGAGCGAATACTGGCGA+AGG | - | chr1.3:41356035-41356054 | None:intergenic | 55.0% | |
| CTTACTAACGGCGGCACTCA+CGG | + | chr1.3:41354258-41354277 | MS.gene41016:CDS | 55.0% | |
| TCGCGTCAGCGTCACAACAA+CGG | - | chr1.3:41354985-41355004 | None:intergenic | 55.0% | |
| ! | CGACGGATTCACGTTGGGAT+TGG | + | chr1.3:41354360-41354379 | MS.gene41016:CDS | 55.0% |
| ! | GAGATCCGACGGATTCACGT+TGG | + | chr1.3:41354354-41354373 | MS.gene41016:CDS | 55.0% |
| ACACGACACGTGTCCGACAC+CGG | - | chr1.3:41355045-41355064 | None:intergenic | 60.0% | |
| ACACGCGTCCAGAGATCCGA+CGG | + | chr1.3:41354343-41354362 | MS.gene41016:CDS | 60.0% | |
| TGGACGCGTGTGTCTGTGCA+AGG | - | chr1.3:41354334-41354353 | None:intergenic | 60.0% | |
| ! | CGTGAGTGCCGCCGTTAGTA+AGG | - | chr1.3:41354260-41354279 | None:intergenic | 60.0% |
| ! | GGGATTGGCGTTCGCTTCGA+AGG | + | chr1.3:41354375-41354394 | MS.gene41016:CDS | 60.0% |
| ACTAACGGCGGCACTCACGG+CGG | + | chr1.3:41354261-41354280 | MS.gene41016:CDS | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr1.3:41355044-41355063 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 41354244 | 41356110 | 41354244 | ID=MS.gene41016 |
| chr1.3 | mRNA | 41354244 | 41356110 | 41354244 | ID=MS.gene41016.t1;Parent=MS.gene41016 |
| chr1.3 | exon | 41354244 | 41354549 | 41354244 | ID=MS.gene41016.t1.exon1;Parent=MS.gene41016.t1 |
| chr1.3 | CDS | 41354244 | 41354549 | 41354244 | ID=cds.MS.gene41016.t1;Parent=MS.gene41016.t1 |
| chr1.3 | exon | 41355553 | 41355657 | 41355553 | ID=MS.gene41016.t1.exon2;Parent=MS.gene41016.t1 |
| chr1.3 | CDS | 41355553 | 41355657 | 41355553 | ID=cds.MS.gene41016.t1;Parent=MS.gene41016.t1 |
| chr1.3 | exon | 41355799 | 41356110 | 41355799 | ID=MS.gene41016.t1.exon3;Parent=MS.gene41016.t1 |
| chr1.3 | CDS | 41355799 | 41356110 | 41355799 | ID=cds.MS.gene41016.t1;Parent=MS.gene41016.t1 |
| Gene Sequence |
| Protein sequence |
