Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41240.t1 | XP_013450334.1 | 96.6 | 383 | 13 | 0 | 1 | 383 | 1 | 383 | 1.30E-217 | 765.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41240.t1 | Q9FVQ0 | 47.6 | 376 | 197 | 0 | 8 | 383 | 5 | 380 | 3.2e-108 | 393.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41240.t1 | A0A072U3V7 | 96.6 | 383 | 13 | 0 | 1 | 383 | 1 | 383 | 9.2e-218 | 765.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene41240 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene050430 | MS.gene41240 | 0.831862 | 1.31E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene41240 | 0.801851 | 7.41E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene41240 | 0.802363 | 5.81E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene41240 | 0.802504 | 5.44E-49 | -1.69E-46 |
| MS.gene053512 | MS.gene41240 | 0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene053974 | MS.gene41240 | 0.812095 | 5.04E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene41240 | 0.811742 | 6.01E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene41240 | 0.810145 | 1.33E-50 | -1.69E-46 |
| MS.gene057021 | MS.gene41240 | 0.805732 | 1.16E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene41240 | 0.828512 | 8.63E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene41240 | 0.809416 | 1.91E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene41240 | 0.80618 | 9.32E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene41240 | 0.836762 | 7.74E-57 | -1.69E-46 |
| MS.gene060843 | MS.gene41240 | 0.811325 | 7.41E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41240.t1 | MTR_7g107690 | 96.606 | 383 | 13 | 0 | 1 | 383 | 1 | 383 | 0.0 | 771 |
| MS.gene41240.t1 | MTR_7g107710 | 67.380 | 374 | 120 | 2 | 8 | 380 | 6 | 378 | 0.0 | 536 |
| MS.gene41240.t1 | MTR_8g432640 | 49.202 | 376 | 188 | 1 | 8 | 383 | 6 | 378 | 1.08e-137 | 398 |
| MS.gene41240.t1 | MTR_5g033260 | 49.593 | 369 | 186 | 0 | 8 | 376 | 6 | 374 | 1.84e-135 | 392 |
| MS.gene41240.t1 | MTR_3g088925 | 49.864 | 369 | 185 | 0 | 8 | 376 | 7 | 375 | 2.90e-133 | 387 |
| MS.gene41240.t1 | MTR_3g088945 | 49.864 | 369 | 185 | 0 | 8 | 376 | 7 | 375 | 8.21e-133 | 385 |
| MS.gene41240.t1 | MTR_3g088955 | 49.051 | 369 | 188 | 0 | 8 | 376 | 7 | 375 | 1.76e-130 | 380 |
| MS.gene41240.t1 | MTR_4g051642 | 48.780 | 369 | 188 | 1 | 8 | 376 | 7 | 374 | 1.36e-127 | 373 |
| MS.gene41240.t1 | MTR_3g109520 | 45.910 | 379 | 199 | 2 | 9 | 382 | 40 | 417 | 5.51e-122 | 359 |
| MS.gene41240.t1 | MTR_6g086870 | 45.383 | 379 | 196 | 4 | 9 | 378 | 21 | 397 | 2.63e-119 | 352 |
| MS.gene41240.t1 | MTR_1g008380 | 46.649 | 373 | 192 | 3 | 9 | 376 | 43 | 413 | 7.08e-119 | 352 |
| MS.gene41240.t1 | MTR_1g069275 | 44.737 | 380 | 200 | 5 | 9 | 382 | 26 | 401 | 7.86e-118 | 348 |
| MS.gene41240.t1 | MTR_7g099330 | 43.008 | 379 | 204 | 4 | 9 | 382 | 25 | 396 | 8.53e-115 | 341 |
| MS.gene41240.t1 | MTR_1g046230 | 44.267 | 375 | 200 | 4 | 9 | 376 | 25 | 397 | 1.25e-114 | 340 |
| MS.gene41240.t1 | MTR_1g011630 | 43.158 | 380 | 205 | 4 | 9 | 383 | 17 | 390 | 3.56e-114 | 339 |
| MS.gene41240.t1 | MTR_7g099160 | 39.871 | 311 | 175 | 4 | 77 | 382 | 214 | 517 | 1.57e-77 | 249 |
| MS.gene41240.t1 | MTR_3g096030 | 40.331 | 181 | 84 | 1 | 4 | 184 | 2 | 158 | 7.81e-45 | 152 |
| MS.gene41240.t1 | MTR_1g041605 | 82.500 | 40 | 7 | 0 | 112 | 151 | 29 | 68 | 1.06e-16 | 74.3 |
| MS.gene41240.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 3.69e-15 | 75.5 |
| MS.gene41240.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 5.60e-15 | 75.5 |
| MS.gene41240.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 1.07e-14 | 75.5 |
| MS.gene41240.t1 | MTR_8g037880 | 23.849 | 239 | 149 | 6 | 7 | 217 | 3 | 236 | 2.12e-14 | 74.7 |
| MS.gene41240.t1 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 8.19e-14 | 72.4 |
| MS.gene41240.t1 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 1.89e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41240.t1 | AT1G48910 | 47.606 | 376 | 197 | 0 | 8 | 383 | 5 | 380 | 3.69e-139 | 402 |
| MS.gene41240.t1 | AT1G21430 | 45.692 | 383 | 202 | 5 | 1 | 380 | 1 | 380 | 2.65e-123 | 362 |
| MS.gene41240.t1 | AT1G04610 | 46.277 | 376 | 192 | 5 | 9 | 376 | 38 | 411 | 1.03e-120 | 357 |
| MS.gene41240.t1 | AT4G13260 | 44.504 | 373 | 201 | 2 | 9 | 376 | 29 | 400 | 2.13e-117 | 347 |
| MS.gene41240.t1 | AT5G25620 | 45.867 | 375 | 193 | 4 | 9 | 376 | 33 | 404 | 2.10e-116 | 345 |
| MS.gene41240.t1 | AT5G25620 | 45.867 | 375 | 193 | 4 | 9 | 376 | 33 | 404 | 5.77e-116 | 344 |
| MS.gene41240.t1 | AT5G43890 | 43.421 | 380 | 206 | 5 | 9 | 381 | 26 | 403 | 1.51e-115 | 343 |
| MS.gene41240.t1 | AT4G28720 | 43.307 | 381 | 206 | 5 | 9 | 381 | 26 | 404 | 3.30e-115 | 342 |
| MS.gene41240.t1 | AT1G04180 | 44.063 | 379 | 202 | 5 | 9 | 381 | 26 | 400 | 2.01e-114 | 340 |
| MS.gene41240.t1 | AT4G32540 | 43.850 | 374 | 197 | 5 | 9 | 376 | 22 | 388 | 1.93e-113 | 337 |
| MS.gene41240.t1 | AT4G32540 | 44.267 | 375 | 196 | 5 | 9 | 376 | 22 | 390 | 3.02e-113 | 337 |
| MS.gene41240.t1 | AT5G11320 | 44.504 | 373 | 194 | 4 | 9 | 376 | 18 | 382 | 9.67e-112 | 333 |
| MS.gene41240.t1 | AT2G33230 | 44.149 | 376 | 199 | 5 | 9 | 376 | 33 | 405 | 1.21e-107 | 323 |
| MS.gene41240.t1 | AT5G11320 | 44.582 | 323 | 167 | 3 | 9 | 326 | 18 | 333 | 1.29e-95 | 290 |
| MS.gene41240.t1 | AT4G13260 | 46.099 | 282 | 147 | 1 | 9 | 285 | 29 | 310 | 2.69e-92 | 280 |
| MS.gene41240.t1 | AT4G13260 | 40.678 | 295 | 168 | 3 | 87 | 376 | 5 | 297 | 8.41e-77 | 240 |
| MS.gene41240.t1 | AT1G65860 | 27.542 | 236 | 135 | 4 | 5 | 213 | 10 | 236 | 5.61e-16 | 79.7 |
| MS.gene41240.t1 | AT1G62560 | 27.615 | 239 | 132 | 7 | 5 | 213 | 10 | 237 | 6.43e-16 | 79.0 |
| MS.gene41240.t1 | AT1G62560 | 27.966 | 236 | 129 | 7 | 8 | 213 | 13 | 237 | 7.45e-16 | 79.3 |
| MS.gene41240.t1 | AT1G12140 | 30.058 | 173 | 104 | 4 | 49 | 213 | 74 | 237 | 1.28e-13 | 72.4 |
| MS.gene41240.t1 | AT1G12140 | 30.058 | 173 | 104 | 4 | 49 | 213 | 74 | 237 | 1.28e-13 | 72.4 |
| MS.gene41240.t1 | AT1G12160 | 23.770 | 366 | 177 | 10 | 8 | 342 | 12 | 306 | 2.30e-13 | 71.6 |
| MS.gene41240.t1 | AT5G07800 | 27.413 | 259 | 139 | 8 | 5 | 226 | 13 | 259 | 3.09e-13 | 71.2 |
| MS.gene41240.t1 | AT1G19250 | 24.896 | 241 | 136 | 9 | 5 | 205 | 10 | 245 | 1.67e-12 | 69.3 |
| MS.gene41240.t1 | AT5G61290 | 26.971 | 241 | 136 | 6 | 1 | 205 | 9 | 245 | 2.87e-12 | 68.2 |
| MS.gene41240.t1 | AT1G62620 | 23.605 | 233 | 138 | 6 | 8 | 205 | 13 | 240 | 8.37e-12 | 66.6 |
| MS.gene41240.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 8.89e-12 | 66.6 |
| MS.gene41240.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 9.11e-12 | 66.6 |
| MS.gene41240.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 9.40e-12 | 66.6 |
| MS.gene41240.t1 | AT1G12200 | 32.857 | 140 | 78 | 5 | 80 | 213 | 113 | 242 | 5.83e-11 | 63.9 |
| MS.gene41240.t1 | AT1G12200 | 32.857 | 140 | 78 | 5 | 80 | 213 | 113 | 242 | 7.35e-11 | 63.9 |
Find 82 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAGGGGTATGCTGAATT+TGG | 0.142332 | 1.4:-35648751 | MS.gene41240:CDS |
| CTCTTCAACCCTTCAATTTC+AGG | 0.149369 | 1.4:+35649143 | None:intergenic |
| TACGGGGATGTCACGAATTA+TGG | 0.154022 | 1.4:-35648657 | MS.gene41240:CDS |
| GTTGTTGGGTCTGGGAATTC+TGG | 0.176673 | 1.4:-35649050 | MS.gene41240:CDS |
| GTACTTGACCTTCATATAAA+AGG | 0.212639 | 1.4:+35648611 | None:intergenic |
| TCAAGGGGTATGCTGAATTT+GGG | 0.240991 | 1.4:-35648750 | MS.gene41240:CDS |
| GTTGTTGGAGCAGGCCCTTC+TGG | 0.254075 | 1.4:-35649554 | MS.gene41240:CDS |
| CATGTTCTTGTTGTTGGGTC+TGG | 0.258715 | 1.4:-35649059 | MS.gene41240:CDS |
| AATTAAGTCTCGAGAGTTAA+AGG | 0.305662 | 1.4:-35648550 | MS.gene41240:intron |
| GATGGTGATGCTTAGTAAAA+TGG | 0.306091 | 1.4:-35648682 | MS.gene41240:CDS |
| TCTCTTTCGAGGATTATATA+AGG | 0.314818 | 1.4:+35649494 | None:intergenic |
| ATGCTTAGTAAAATGGTTTA+CGG | 0.339605 | 1.4:-35648675 | MS.gene41240:CDS |
| GAAGGTGAAGGCTAAGAATA+AGG | 0.345400 | 1.4:-35649240 | MS.gene41240:CDS |
| AATGAAAGAGTGATAGTTGT+TGG | 0.360593 | 1.4:-35649569 | MS.gene41240:CDS |
| GGGAAAGTGATTCATTCAAC+TGG | 0.376100 | 1.4:-35649113 | MS.gene41240:CDS |
| GATGAACATGTTCTTGTTGT+TGG | 0.376175 | 1.4:-35649065 | MS.gene41240:CDS |
| TGCTTAGTAAAATGGTTTAC+GGG | 0.386664 | 1.4:-35648674 | MS.gene41240:CDS |
| AAAGTTCCAACGTCAATAAT+AGG | 0.387465 | 1.4:+35648579 | None:intergenic |
| AGCCAAGTTACCCTATTCAT+TGG | 0.388713 | 1.4:-35646888 | MS.gene41240:CDS |
| ATCAACCCACAAGTGGCTTA+AGG | 0.389315 | 1.4:-35647341 | MS.gene41240:intron |
| ATGTTCTTGTTGTTGGGTCT+GGG | 0.391709 | 1.4:-35649058 | MS.gene41240:CDS |
| CATTCAACTGGGTTTAAGAA+TGG | 0.393718 | 1.4:-35649101 | MS.gene41240:CDS |
| ATGATGAAGGTTCTGAGAAA+TGG | 0.397382 | 1.4:-35649262 | MS.gene41240:CDS |
| CCTTCAATTTCAGGTACAAA+AGG | 0.400011 | 1.4:+35649152 | None:intergenic |
| CTATCAAGGAGAGGTTTCTA+TGG | 0.400558 | 1.4:-35646835 | MS.gene41240:CDS |
| ACGGGGATGTCACGAATTAT+GGG | 0.428718 | 1.4:-35648656 | MS.gene41240:CDS |
| TATATTGTGTTGGACTATCA+AGG | 0.438069 | 1.4:-35646849 | MS.gene41240:CDS |
| ATTCAACTGGGTTTAAGAAT+GGG | 0.438492 | 1.4:-35649100 | MS.gene41240:CDS |
| TAAGGATACTGGTGAGGTTG+AGG | 0.446777 | 1.4:-35649222 | MS.gene41240:CDS |
| CTTAAGCATTCTATTTCAGC+TGG | 0.447488 | 1.4:+35647439 | None:intergenic |
| TCAACTGTTCTGTGATAAAG+AGG | 0.449237 | 1.4:+35649296 | None:intergenic |
| ATGAATAGGGTAACTTGGCT+TGG | 0.450552 | 1.4:+35646891 | None:intergenic |
| TTCGAGGATTATATAAGGAA+TGG | 0.455797 | 1.4:+35649499 | None:intergenic |
| TTCCAATGAATAGGGTAACT+TGG | 0.456789 | 1.4:+35646886 | None:intergenic |
| AAGGCTAAGAATAAGGATAC+TGG | 0.466803 | 1.4:-35649233 | MS.gene41240:CDS |
| TTCTGGCATGGAAATTGCAT+TGG | 0.469456 | 1.4:-35649033 | MS.gene41240:CDS |
| ATGAACATGTTCTTGTTGTT+GGG | 0.471420 | 1.4:-35649064 | MS.gene41240:CDS |
| TACTTGACCTTCATATAAAA+GGG | 0.473078 | 1.4:+35648612 | None:intergenic |
| GTAAACCTTAAGCCACTTGT+GGG | 0.488383 | 1.4:+35647336 | None:intergenic |
| TGAATAGGGTAACTTGGCTT+GGG | 0.488661 | 1.4:+35646892 | None:intergenic |
| GGATTATATAAGGAATGGAT+TGG | 0.489614 | 1.4:+35649504 | None:intergenic |
| GAATACCATCATCATTCAAA+AGG | 0.492685 | 1.4:+35646914 | None:intergenic |
| TCTGATGAAGTATTTGTCAA+TGG | 0.510851 | 1.4:-35648721 | MS.gene41240:CDS |
| CAAGGGGTATGCTGAATTTG+GGG | 0.511286 | 1.4:-35648749 | MS.gene41240:CDS |
| GCTGAAATAGAATGCTTAAG+TGG | 0.513060 | 1.4:-35647436 | MS.gene41240:CDS |
| CTTGCTTCGAACAACGATTG+AGG | 0.514809 | 1.4:+35648986 | None:intergenic |
| CTTCAATTTCAGGTACAAAA+GGG | 0.526666 | 1.4:+35649153 | None:intergenic |
| ATATAAAAGGGACCCTCGCT+AGG | 0.528393 | 1.4:+35648624 | None:intergenic |
| TGTAAACCTTAAGCCACTTG+TGG | 0.531681 | 1.4:+35647335 | None:intergenic |
| CTCAATCGTTGTTCGAAGCA+AGG | 0.531935 | 1.4:-35648985 | MS.gene41240:intron |
| GGAATGTATGATGGAAAAGA+AGG | 0.532095 | 1.4:+35649374 | None:intergenic |
| AAGTTACCCTATTCATTGGA+AGG | 0.536623 | 1.4:-35646884 | MS.gene41240:CDS |
| GGTGAGGTTGAGGAATATGA+AGG | 0.542585 | 1.4:-35649212 | MS.gene41240:CDS |
| AGGTTGAGGAATATGAAGGA+AGG | 0.551335 | 1.4:-35649208 | MS.gene41240:CDS |
| ATGTATGATGGAAAAGAAGG+TGG | 0.552215 | 1.4:+35649377 | None:intergenic |
| GATGGAAAAGAAGGTGGGAA+TGG | 0.556044 | 1.4:+35649383 | None:intergenic |
| TGGGGTTGGTAGGCCTAGCG+AGG | 0.560055 | 1.4:-35648637 | MS.gene41240:CDS |
| AGAGTGATAGTTGTTGGAGC+AGG | 0.568437 | 1.4:-35649563 | MS.gene41240:CDS |
| TCACGAATTATGGGGTTGGT+AGG | 0.576228 | 1.4:-35648647 | MS.gene41240:CDS |
| GAGAATGCAGAGTATGATGA+AGG | 0.578252 | 1.4:-35649275 | MS.gene41240:CDS |
| GTATTTGTCAATGGAGATGG+TGG | 0.579490 | 1.4:-35648712 | MS.gene41240:CDS |
| TGGGTCTGGGAATTCTGGCA+TGG | 0.586713 | 1.4:-35649045 | MS.gene41240:CDS |
| CGGGGATGTCACGAATTATG+GGG | 0.588744 | 1.4:-35648655 | MS.gene41240:CDS |
| GTGGGTTGATCTATTGAAGC+CGG | 0.593433 | 1.4:+35647354 | None:intergenic |
| GGAAAGTGATTCATTCAACT+GGG | 0.594965 | 1.4:-35649112 | MS.gene41240:CDS |
| TGTATGATGGAAAAGAAGGT+GGG | 0.596307 | 1.4:+35649378 | None:intergenic |
| AGTTACCCTATTCATTGGAA+GGG | 0.596925 | 1.4:-35646883 | MS.gene41240:CDS |
| GAAGTATTTGTCAATGGAGA+TGG | 0.597497 | 1.4:-35648715 | MS.gene41240:CDS |
| GCTGCTACTGAGAGACCAGA+AGG | 0.602816 | 1.4:+35649539 | None:intergenic |
| GAAGGTGGGAATGGTTTGTG+AGG | 0.606122 | 1.4:+35649392 | None:intergenic |
| TGTGTTGGACTATCAAGGAG+AGG | 0.616154 | 1.4:-35646844 | MS.gene41240:CDS |
| GGAGATGGTGGATTTAGTGA+TGG | 0.618594 | 1.4:-35648700 | MS.gene41240:CDS |
| TTCTGAGAAATGGAAGGTGA+AGG | 0.623363 | 1.4:-35649252 | MS.gene41240:CDS |
| GATGTCACGAATTATGGGGT+TGG | 0.629113 | 1.4:-35648651 | MS.gene41240:CDS |
| TCAATAGATCAACCCACAAG+TGG | 0.631691 | 1.4:-35647348 | MS.gene41240:CDS |
| GGGGTTGGTAGGCCTAGCGA+GGG | 0.634372 | 1.4:-35648636 | MS.gene41240:CDS |
| GCATTGGATCTTATCAACCA+TGG | 0.635858 | 1.4:-35649017 | MS.gene41240:CDS |
| AAGTATCCTATTATTGACGT+TGG | 0.642218 | 1.4:-35648585 | MS.gene41240:CDS |
| GCTTAGTAAAATGGTTTACG+GGG | 0.650434 | 1.4:-35648673 | MS.gene41240:CDS |
| CTGCTACTGAGAGACCAGAA+GGG | 0.656151 | 1.4:+35649540 | None:intergenic |
| TAAGAATAAGGATACTGGTG+AGG | 0.661843 | 1.4:-35649228 | MS.gene41240:CDS |
| TGAAGGTTCTGAGAAATGGA+AGG | 0.688803 | 1.4:-35649258 | MS.gene41240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAATATAATAAATGC+AGG | - | chr1.4:35647571-35647590 | MS.gene41240:intron | 10.0% |
| !!! | AAAAAAATCTGTTTTTTTTA+AGG | - | chr1.4:35648295-35648314 | MS.gene41240:intron | 10.0% |
| !!! | ATTGGTTTTTTTTTTTTTTT+TGG | + | chr1.4:35648269-35648288 | None:intergenic | 10.0% |
| !!! | TAAACTAATTAATTATCTTT+TGG | - | chr1.4:35649404-35649423 | MS.gene41240:CDS | 10.0% |
| !!! | TTGATTTTAATGATAATTTA+TGG | + | chr1.4:35647932-35647951 | None:intergenic | 10.0% |
| !! | AAAATAAAGGATTAAATTGA+TGG | - | chr1.4:35648005-35648024 | MS.gene41240:intron | 15.0% |
| !! | AACAAATTTATTTAAGTGAA+AGG | - | chr1.4:35648641-35648660 | MS.gene41240:CDS | 15.0% |
| !! | ATGTATTCAAGTATAATTTA+AGG | + | chr1.4:35647964-35647983 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAAACATGATA+AGG | + | chr1.4:35649251-35649270 | None:intergenic | 15.0% |
| !!! | ATGTCATTTTATTAAAAAGA+TGG | - | chr1.4:35648688-35648707 | MS.gene41240:CDS | 15.0% |
| !!! | CAAAAAAGAATAGTTTTTTT+AGG | - | chr1.4:35649271-35649290 | MS.gene41240:CDS | 15.0% |
| !!! | TAATTAATTATCTTTTGGTA+GGG | - | chr1.4:35649409-35649428 | MS.gene41240:CDS | 15.0% |
| !!! | TATTGTAAAAACTTTTCTTT+AGG | + | chr1.4:35647005-35647024 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTAATAGTTTA+AGG | - | chr1.4:35648052-35648071 | MS.gene41240:intron | 15.0% |
| !!! | TTCAGAAGATTTTTTTTTTA+GGG | + | chr1.4:35648203-35648222 | None:intergenic | 15.0% |
| !!! | TTTCAGAAGATTTTTTTTTT+AGG | + | chr1.4:35648204-35648223 | None:intergenic | 15.0% |
| !! | AAAAATGGTTTATATTGTGT+TGG | - | chr1.4:35649496-35649515 | MS.gene41240:CDS | 20.0% |
| !! | AATATACGTCAAAGTATATA+TGG | + | chr1.4:35649372-35649391 | None:intergenic | 20.0% |
| !! | AATGTATGTTACATGAAAAT+GGG | - | chr1.4:35649320-35649339 | MS.gene41240:CDS | 20.0% |
| !! | ACCTAAAATAACATTTAGAT+GGG | - | chr1.4:35648603-35648622 | MS.gene41240:CDS | 20.0% |
| !! | AGAATGACATATATTTCAAT+AGG | + | chr1.4:35648366-35648385 | None:intergenic | 20.0% |
| !! | ATTGAAATATATGTCATTCT+AGG | - | chr1.4:35648366-35648385 | MS.gene41240:intron | 20.0% |
| !! | TAATGTATGTTACATGAAAA+TGG | - | chr1.4:35649319-35649338 | MS.gene41240:CDS | 20.0% |
| !! | TACCTAAAATAACATTTAGA+TGG | - | chr1.4:35648602-35648621 | MS.gene41240:CDS | 20.0% |
| !! | TCCATAAACAAGTAAAATAA+AGG | - | chr1.4:35647992-35648011 | MS.gene41240:intron | 20.0% |
| !! | TGAAAAGTGAAATATAATTG+TGG | - | chr1.4:35648839-35648858 | MS.gene41240:intron | 20.0% |
| !!! | AACCATATTACACAAATTTT+AGG | + | chr1.4:35647893-35647912 | None:intergenic | 20.0% |
| !!! | ACAGATTTTTTTGTATGTAT+TGG | + | chr1.4:35648287-35648306 | None:intergenic | 20.0% |
| !!! | CTAATTAATTATCTTTTGGT+AGG | - | chr1.4:35649408-35649427 | MS.gene41240:CDS | 20.0% |
| !!! | TCCTTTATTTTACTTGTTTA+TGG | + | chr1.4:35647996-35648015 | None:intergenic | 20.0% |
| ! | AAAGGTAAGTTAGAGATAAT+TGG | - | chr1.4:35647823-35647842 | MS.gene41240:intron | 25.0% |
| ! | AGGTTATCTAACTATAAACA+AGG | - | chr1.4:35648661-35648680 | MS.gene41240:CDS | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | - | chr1.4:35647680-35647699 | MS.gene41240:intron | 25.0% |
| ! | CACCTAAAATTTGTGTAATA+TGG | - | chr1.4:35647888-35647907 | MS.gene41240:intron | 25.0% |
| ! | CCTAAAATAACATTTAGATG+GGG | - | chr1.4:35648604-35648623 | MS.gene41240:CDS | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | + | chr1.4:35647746-35647765 | None:intergenic | 25.0% |
| ! | TTGGTTACAATAGTATGTAT+TGG | + | chr1.4:35648250-35648269 | None:intergenic | 25.0% |
| !! | AAATATATGTCATTCTAGGA+AGG | - | chr1.4:35648370-35648389 | MS.gene41240:intron | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | - | chr1.4:35647746-35647765 | MS.gene41240:intron | 25.0% |
| !!! | AAAATTGTTTTGCATCACTA+TGG | - | chr1.4:35646883-35646902 | MS.gene41240:CDS | 25.0% |
| !!! | ATTGTGTTATGTGTTTTGTT+AGG | - | chr1.4:35648888-35648907 | MS.gene41240:intron | 25.0% |
| !!! | TTTTCTTTAGGAATGTATGA+TGG | + | chr1.4:35646993-35647012 | None:intergenic | 25.0% |
| AAAGTTCCAACGTCAATAAT+AGG | + | chr1.4:35647779-35647798 | None:intergenic | 30.0% | |
| AAGAATGTCCTCTTCAAAAA+TGG | - | chr1.4:35648943-35648962 | MS.gene41240:intron | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | - | chr1.4:35647770-35647789 | MS.gene41240:intron | 30.0% | |
| AAGTTAGAGATAATTGGCAT+TGG | - | chr1.4:35647829-35647848 | MS.gene41240:intron | 30.0% | |
| AATGAAAGAGTGATAGTTGT+TGG | - | chr1.4:35646786-35646805 | MS.gene41240:CDS | 30.0% | |
| AATTAAGTCTCGAGAGTTAA+AGG | - | chr1.4:35647805-35647824 | MS.gene41240:intron | 30.0% | |
| ATTCAACTGGGTTTAAGAAT+GGG | - | chr1.4:35647255-35647274 | MS.gene41240:intron | 30.0% | |
| ATTCATTGGAAGGGAAAAAA+TGG | - | chr1.4:35649481-35649500 | MS.gene41240:CDS | 30.0% | |
| CTGAATCTGAATTATTCTTC+AGG | + | chr1.4:35648756-35648775 | None:intergenic | 30.0% | |
| GAATACCATCATCATTCAAA+AGG | + | chr1.4:35649444-35649463 | None:intergenic | 30.0% | |
| GAATAGATCAATATCAGCAA+CGG | - | chr1.4:35649141-35649160 | MS.gene41240:CDS | 30.0% | |
| GGATTATATAAGGAATGGAT+TGG | + | chr1.4:35646854-35646873 | None:intergenic | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | + | chr1.4:35647747-35647766 | None:intergenic | 30.0% | |
| TAATAGTTTAAGGACCAAAG+TGG | - | chr1.4:35648062-35648081 | MS.gene41240:intron | 30.0% | |
| TATATTGTGTTGGACTATCA+AGG | - | chr1.4:35649506-35649525 | MS.gene41240:CDS | 30.0% | |
| TCTCTTTCGAGGATTATATA+AGG | + | chr1.4:35646864-35646883 | None:intergenic | 30.0% | |
| TGCTTAGTAAAATGGTTTAC+GGG | - | chr1.4:35647681-35647700 | MS.gene41240:intron | 30.0% | |
| TTCGAGGATTATATAAGGAA+TGG | + | chr1.4:35646859-35646878 | None:intergenic | 30.0% | |
| ! | ATATATGGTCACGTTTCTTT+TGG | + | chr1.4:35649357-35649376 | None:intergenic | 30.0% |
| ! | CAAAACAATTTTCTCTTTCG+AGG | + | chr1.4:35646875-35646894 | None:intergenic | 30.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | + | chr1.4:35647205-35647224 | None:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | - | chr1.4:35647204-35647223 | MS.gene41240:intron | 30.0% |
| ! | GATTACCTTTTGAATGATGA+TGG | - | chr1.4:35649436-35649455 | MS.gene41240:CDS | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | - | chr1.4:35647634-35647653 | MS.gene41240:intron | 30.0% |
| ! | TTTTTCCCTTCCAATGAATA+GGG | + | chr1.4:35649480-35649499 | None:intergenic | 30.0% |
| !! | ATGAACATGTTCTTGTTGTT+GGG | - | chr1.4:35647291-35647310 | MS.gene41240:intron | 30.0% |
| !!! | CCCCATCTAAATGTTATTTT+AGG | + | chr1.4:35648607-35648626 | None:intergenic | 30.0% |
| !!! | TTTTTTCCCTTCCAATGAAT+AGG | + | chr1.4:35649481-35649500 | None:intergenic | 30.0% |
| AAGGCTAAGAATAAGGATAC+TGG | - | chr1.4:35647122-35647141 | MS.gene41240:intron | 35.0% | |
| AAGTTACCCTATTCATTGGA+AGG | - | chr1.4:35649471-35649490 | MS.gene41240:CDS | 35.0% | |
| AGTTACCCTATTCATTGGAA+GGG | - | chr1.4:35649472-35649491 | MS.gene41240:CDS | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | - | chr1.4:35647254-35647273 | MS.gene41240:intron | 35.0% | |
| CTTAAGCATTCTATTTCAGC+TGG | + | chr1.4:35648919-35648938 | None:intergenic | 35.0% | |
| GCTGAAATAGAATGCTTAAG+TGG | - | chr1.4:35648919-35648938 | MS.gene41240:intron | 35.0% | |
| GCTTAGTAAAATGGTTTACG+GGG | - | chr1.4:35647682-35647701 | MS.gene41240:intron | 35.0% | |
| GGAAAGTGATTCATTCAACT+GGG | - | chr1.4:35647243-35647262 | MS.gene41240:intron | 35.0% | |
| TAAGAATAAGGATACTGGTG+AGG | - | chr1.4:35647127-35647146 | MS.gene41240:intron | 35.0% | |
| TCAACTGTTCTGTGATAAAG+AGG | + | chr1.4:35647062-35647081 | None:intergenic | 35.0% | |
| TTCCAATGAATAGGGTAACT+TGG | + | chr1.4:35649472-35649491 | None:intergenic | 35.0% | |
| ! | AAGGGTTGAAGAGTTTTACT+GGG | - | chr1.4:35647222-35647241 | MS.gene41240:intron | 35.0% |
| ! | ATGTATGATGGAAAAGAAGG+TGG | + | chr1.4:35646981-35647000 | None:intergenic | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | + | chr1.4:35647206-35647225 | None:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | - | chr1.4:35647203-35647222 | MS.gene41240:intron | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | - | chr1.4:35647640-35647659 | MS.gene41240:intron | 35.0% |
| ! | GACTCTATTATTTTCTGCAC+CGG | - | chr1.4:35648982-35649001 | MS.gene41240:intron | 35.0% |
| ! | GATGAACATGTTCTTGTTGT+TGG | - | chr1.4:35647290-35647309 | MS.gene41240:intron | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | - | chr1.4:35647673-35647692 | MS.gene41240:intron | 35.0% |
| ! | GGAATATGAAGGAAGGTTTT+TGG | - | chr1.4:35647154-35647173 | MS.gene41240:intron | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | + | chr1.4:35646984-35647003 | None:intergenic | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | - | chr1.4:35647486-35647505 | MS.gene41240:intron | 35.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | + | chr1.4:35646980-35646999 | None:intergenic | 35.0% |
| !! | ATAATTGGCATTGGTTGCTT+TGG | - | chr1.4:35647838-35647857 | MS.gene41240:intron | 35.0% |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | - | chr1.4:35647093-35647112 | MS.gene41240:intron | 35.0% |
| !! | GCAATTGACCATTTTTGAAG+AGG | + | chr1.4:35648954-35648973 | None:intergenic | 35.0% |
| !!! | GCTCGCAAAATTGTTTTTTG+AGG | + | chr1.4:35646941-35646960 | None:intergenic | 35.0% |
| AGCCAAGTTACCCTATTCAT+TGG | - | chr1.4:35649467-35649486 | MS.gene41240:CDS | 40.0% | |
| AGGTTGAGGAATATGAAGGA+AGG | - | chr1.4:35647147-35647166 | MS.gene41240:intron | 40.0% | |
| ATGAATAGGGTAACTTGGCT+TGG | + | chr1.4:35649467-35649486 | None:intergenic | 40.0% | |
| CTATCAAGGAGAGGTTTCTA+TGG | - | chr1.4:35649520-35649539 | MS.gene41240:CDS | 40.0% | |
| CTCTTCAACCCTTCAATTTC+AGG | + | chr1.4:35647215-35647234 | None:intergenic | 40.0% | |
| GAAGGTGAAGGCTAAGAATA+AGG | - | chr1.4:35647115-35647134 | MS.gene41240:intron | 40.0% | |
| GAGAATGCAGAGTATGATGA+AGG | - | chr1.4:35647080-35647099 | MS.gene41240:intron | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | - | chr1.4:35647338-35647357 | MS.gene41240:intron | 40.0% | |
| GGGAAAGTGATTCATTCAAC+TGG | - | chr1.4:35647242-35647261 | MS.gene41240:intron | 40.0% | |
| GTAAACCTTAAGCCACTTGT+GGG | + | chr1.4:35649022-35649041 | None:intergenic | 40.0% | |
| GTATTTGTCAATGGAGATGG+TGG | - | chr1.4:35647643-35647662 | MS.gene41240:intron | 40.0% | |
| GTTGTTGTGACATGACGAAT+GGG | - | chr1.4:35648864-35648883 | MS.gene41240:intron | 40.0% | |
| TCAATAGATCAACCCACAAG+TGG | - | chr1.4:35649007-35649026 | MS.gene41240:CDS | 40.0% | |
| TGAATAGGGTAACTTGGCTT+GGG | + | chr1.4:35649466-35649485 | None:intergenic | 40.0% | |
| TGTAAACCTTAAGCCACTTG+TGG | + | chr1.4:35649023-35649042 | None:intergenic | 40.0% | |
| TGTTGTTGTGACATGACGAA+TGG | - | chr1.4:35648863-35648882 | MS.gene41240:intron | 40.0% | |
| TTCTGGCATGGAAATTGCAT+TGG | - | chr1.4:35647322-35647341 | MS.gene41240:intron | 40.0% | |
| ! | CAGGTTCACATTTTGTCAAG+GGG | - | chr1.4:35647590-35647609 | MS.gene41240:intron | 40.0% |
| ! | GAAGGGTTGAAGAGTTTTAC+TGG | - | chr1.4:35647221-35647240 | MS.gene41240:intron | 40.0% |
| ! | GCAGGTTCACATTTTGTCAA+GGG | - | chr1.4:35647589-35647608 | MS.gene41240:intron | 40.0% |
| ! | TCAAGGGGTATGCTGAATTT+GGG | - | chr1.4:35647605-35647624 | MS.gene41240:intron | 40.0% |
| ! | TGCAGGTTCACATTTTGTCA+AGG | - | chr1.4:35647588-35647607 | MS.gene41240:intron | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | - | chr1.4:35647103-35647122 | MS.gene41240:intron | 40.0% |
| !! | ATGTTCTTGTTGTTGGGTCT+GGG | - | chr1.4:35647297-35647316 | MS.gene41240:intron | 40.0% |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | - | chr1.4:35647097-35647116 | MS.gene41240:intron | 40.0% |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | - | chr1.4:35647160-35647179 | MS.gene41240:intron | 40.0% |
| ACGGGGATGTCACGAATTAT+GGG | - | chr1.4:35647699-35647718 | MS.gene41240:intron | 45.0% | |
| AGAGTGATAGTTGTTGGAGC+AGG | - | chr1.4:35646792-35646811 | MS.gene41240:CDS | 45.0% | |
| ATATAAAAGGGACCCTCGCT+AGG | + | chr1.4:35647734-35647753 | None:intergenic | 45.0% | |
| ATCAACCCACAAGTGGCTTA+AGG | - | chr1.4:35649014-35649033 | MS.gene41240:CDS | 45.0% | |
| CTCAATCGTTGTTCGAAGCA+AGG | - | chr1.4:35647370-35647389 | MS.gene41240:CDS | 45.0% | |
| CTTGCTTCGAACAACGATTG+AGG | + | chr1.4:35647372-35647391 | None:intergenic | 45.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | + | chr1.4:35646975-35646994 | None:intergenic | 45.0% | |
| GATGTCACGAATTATGGGGT+TGG | - | chr1.4:35647704-35647723 | MS.gene41240:intron | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | - | chr1.4:35647143-35647162 | MS.gene41240:intron | 45.0% | |
| TAAGGACCAAAGTGGTGAGA+GGG | - | chr1.4:35648070-35648089 | MS.gene41240:intron | 45.0% | |
| TAAGGATACTGGTGAGGTTG+AGG | - | chr1.4:35647133-35647152 | MS.gene41240:intron | 45.0% | |
| TACGGGGATGTCACGAATTA+TGG | - | chr1.4:35647698-35647717 | MS.gene41240:intron | 45.0% | |
| TGTGTTGGACTATCAAGGAG+AGG | - | chr1.4:35649511-35649530 | MS.gene41240:CDS | 45.0% | |
| TTAAGGACCAAAGTGGTGAG+AGG | - | chr1.4:35648069-35648088 | MS.gene41240:intron | 45.0% | |
| ! | CAAGGGGTATGCTGAATTTG+GGG | - | chr1.4:35647606-35647625 | MS.gene41240:intron | 45.0% |
| ! | CGAGGGTCCCTTTTATATGA+AGG | - | chr1.4:35647736-35647755 | MS.gene41240:intron | 45.0% |
| ! | GTCAAGGGGTATGCTGAATT+TGG | - | chr1.4:35647604-35647623 | MS.gene41240:intron | 45.0% |
| ! | TCACGAATTATGGGGTTGGT+AGG | - | chr1.4:35647708-35647727 | MS.gene41240:intron | 45.0% |
| ! | TCAGGCGAGTTACTTTGCTT+GGG | + | chr1.4:35648738-35648757 | None:intergenic | 45.0% |
| ! | TTCAGGCGAGTTACTTTGCT+TGG | + | chr1.4:35648739-35648758 | None:intergenic | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | - | chr1.4:35647296-35647315 | MS.gene41240:intron | 45.0% |
| !! | CGATTGAGGTTTTAGCACCA+TGG | + | chr1.4:35647358-35647377 | None:intergenic | 45.0% |
| !! | GGAGATGGTGGATTTAGTGA+TGG | - | chr1.4:35647655-35647674 | MS.gene41240:intron | 45.0% |
| !! | GGTGAGAGGGTATTGGTTTA+AGG | - | chr1.4:35648083-35648102 | MS.gene41240:intron | 45.0% |
| !! | GTGGGTTGATCTATTGAAGC+CGG | + | chr1.4:35649004-35649023 | None:intergenic | 45.0% |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | - | chr1.4:35647167-35647186 | MS.gene41240:intron | 45.0% |
| CCAATACCCTCTCACCACTT+TGG | + | chr1.4:35648079-35648098 | None:intergenic | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | - | chr1.4:35647700-35647719 | MS.gene41240:intron | 50.0% | |
| CTGCTACTGAGAGACCAGAA+GGG | + | chr1.4:35646818-35646837 | None:intergenic | 50.0% | |
| GTTGTTGGGTCTGGGAATTC+TGG | - | chr1.4:35647305-35647324 | MS.gene41240:intron | 50.0% | |
| ! | CAGGCGAGTTACTTTGCTTG+GGG | + | chr1.4:35648737-35648756 | None:intergenic | 50.0% |
| ! | CCAAAGTGGTGAGAGGGTAT+TGG | - | chr1.4:35648076-35648095 | MS.gene41240:intron | 50.0% |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | + | chr1.4:35646966-35646985 | None:intergenic | 50.0% |
| GCTGCTACTGAGAGACCAGA+AGG | + | chr1.4:35646819-35646838 | None:intergenic | 55.0% | |
| TGGGTCTGGGAATTCTGGCA+TGG | - | chr1.4:35647310-35647329 | MS.gene41240:intron | 55.0% | |
| GTTGTTGGAGCAGGCCCTTC+TGG | - | chr1.4:35646801-35646820 | MS.gene41240:CDS | 60.0% | |
| !! | GGGGTTGGTAGGCCTAGCGA+GGG | - | chr1.4:35647719-35647738 | MS.gene41240:intron | 65.0% |
| !! | TGGGGTTGGTAGGCCTAGCG+AGG | - | chr1.4:35647718-35647737 | MS.gene41240:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 35646774 | 35649603 | 35646774 | ID=MS.gene41240 |
| chr1.4 | mRNA | 35646774 | 35649603 | 35646774 | ID=MS.gene41240.t1;Parent=MS.gene41240 |
| chr1.4 | exon | 35648986 | 35649603 | 35648986 | ID=MS.gene41240.t1.exon1;Parent=MS.gene41240.t1 |
| chr1.4 | CDS | 35648986 | 35649603 | 35648986 | ID=cds.MS.gene41240.t1;Parent=MS.gene41240.t1 |
| chr1.4 | exon | 35648551 | 35648784 | 35648551 | ID=MS.gene41240.t1.exon2;Parent=MS.gene41240.t1 |
| chr1.4 | CDS | 35648551 | 35648784 | 35648551 | ID=cds.MS.gene41240.t1;Parent=MS.gene41240.t1 |
| chr1.4 | exon | 35647342 | 35647467 | 35647342 | ID=MS.gene41240.t1.exon3;Parent=MS.gene41240.t1 |
| chr1.4 | CDS | 35647342 | 35647467 | 35647342 | ID=cds.MS.gene41240.t1;Parent=MS.gene41240.t1 |
| chr1.4 | exon | 35646774 | 35646947 | 35646774 | ID=MS.gene41240.t1.exon4;Parent=MS.gene41240.t1 |
| chr1.4 | CDS | 35646774 | 35646947 | 35646774 | ID=cds.MS.gene41240.t1;Parent=MS.gene41240.t1 |
| Gene Sequence |
| Protein sequence |
