Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41419.t1 | XP_013469685.1 | 96.7 | 959 | 28 | 1 | 1 | 959 | 118 | 1072 | 0.00E+00 | 1800.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41419.t1 | O65607 | 65.6 | 895 | 295 | 7 | 1 | 885 | 124 | 1015 | 0.0e+00 | 1130.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41419.t1 | A0A072VPI7 | 96.7 | 959 | 28 | 1 | 1 | 959 | 118 | 1072 | 0.0e+00 | 1800.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene40912 | MS.gene41419 | PPI |
MS.gene05640 | MS.gene41419 | PPI |
MS.gene049266 | MS.gene41419 | PPI |
MS.gene07047 | MS.gene41419 | PPI |
MS.gene41419 | MS.gene28806 | PPI |
MS.gene04079 | MS.gene41419 | PPI |
MS.gene08109 | MS.gene41419 | PPI |
MS.gene41419 | MS.gene050408 | PPI |
MS.gene41419 | MS.gene072703 | PPI |
MS.gene06380 | MS.gene41419 | PPI |
MS.gene013296 | MS.gene41419 | PPI |
MS.gene04418 | MS.gene41419 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41419.t1 | MTR_1g100683 | 97.080 | 959 | 24 | 1 | 1 | 959 | 118 | 1072 | 0.0 | 1922 |
MS.gene41419.t1 | MTR_1g100683 | 97.080 | 959 | 24 | 1 | 1 | 959 | 118 | 1072 | 0.0 | 1922 |
MS.gene41419.t1 | MTR_7g109470 | 28.967 | 939 | 535 | 28 | 1 | 880 | 356 | 1221 | 5.74e-75 | 269 |
MS.gene41419.t1 | MTR_4g111945 | 29.213 | 623 | 368 | 21 | 283 | 879 | 286 | 861 | 4.79e-57 | 213 |
MS.gene41419.t1 | MTR_6g086270 | 37.818 | 275 | 150 | 7 | 613 | 871 | 816 | 1085 | 8.67e-41 | 163 |
MS.gene41419.t1 | MTR_6g086270 | 27.103 | 321 | 194 | 12 | 46 | 360 | 388 | 674 | 1.13e-12 | 72.8 |
MS.gene41419.t1 | MTR_5g093110 | 36.042 | 283 | 161 | 9 | 600 | 874 | 487 | 757 | 4.66e-40 | 160 |
MS.gene41419.t1 | MTR_5g068600 | 28.634 | 227 | 129 | 5 | 682 | 904 | 432 | 629 | 7.03e-17 | 86.3 |
MS.gene41419.t1 | MTR_5g068600 | 28.455 | 246 | 142 | 6 | 663 | 904 | 314 | 529 | 7.36e-17 | 85.9 |
MS.gene41419.t1 | MTR_1g045670 | 32.632 | 190 | 116 | 3 | 682 | 871 | 766 | 943 | 1.12e-16 | 85.9 |
MS.gene41419.t1 | MTR_4g088920 | 33.071 | 127 | 83 | 2 | 682 | 807 | 428 | 553 | 1.97e-15 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41419.t1 | AT4G25540 | 62.176 | 965 | 335 | 11 | 1 | 953 | 124 | 1070 | 0.0 | 1179 |
MS.gene41419.t1 | AT4G02070 | 29.032 | 930 | 556 | 30 | 1 | 881 | 399 | 1273 | 8.33e-76 | 272 |
MS.gene41419.t1 | AT4G02070 | 29.032 | 930 | 556 | 30 | 1 | 881 | 396 | 1270 | 9.38e-76 | 272 |
MS.gene41419.t1 | AT3G18524 | 27.838 | 643 | 409 | 19 | 292 | 915 | 294 | 900 | 4.48e-58 | 216 |
MS.gene41419.t1 | AT4G17380 | 36.923 | 260 | 146 | 8 | 634 | 892 | 507 | 749 | 1.53e-40 | 161 |
MS.gene41419.t1 | AT3G24495 | 35.517 | 290 | 164 | 8 | 602 | 871 | 752 | 1038 | 2.56e-40 | 162 |
MS.gene41419.t1 | AT3G24495 | 25.067 | 375 | 231 | 12 | 1 | 361 | 287 | 625 | 1.15e-13 | 76.3 |
MS.gene41419.t1 | AT3G20475 | 35.294 | 289 | 169 | 9 | 599 | 880 | 484 | 761 | 5.40e-40 | 160 |
MS.gene41419.t1 | AT4G17380 | 42.458 | 179 | 97 | 4 | 634 | 812 | 507 | 679 | 1.54e-37 | 151 |
MS.gene41419.t1 | AT3G20475 | 37.037 | 270 | 152 | 10 | 599 | 861 | 484 | 742 | 4.30e-37 | 150 |
MS.gene41419.t1 | AT3G20475 | 36.882 | 263 | 148 | 10 | 599 | 854 | 484 | 735 | 8.81e-36 | 146 |
MS.gene41419.t1 | AT5G54090 | 28.622 | 283 | 173 | 5 | 682 | 959 | 438 | 696 | 8.84e-19 | 92.4 |
MS.gene41419.t1 | AT3G24320 | 32.850 | 207 | 125 | 4 | 667 | 871 | 503 | 697 | 7.05e-18 | 89.7 |
MS.gene41419.t1 | AT3G24320 | 32.850 | 207 | 125 | 4 | 667 | 871 | 748 | 942 | 9.11e-18 | 89.4 |
MS.gene41419.t1 | AT1G65070 | 31.250 | 160 | 104 | 4 | 667 | 822 | 385 | 542 | 7.72e-14 | 76.3 |
MS.gene41419.t1 | AT1G65070 | 29.570 | 186 | 118 | 5 | 648 | 822 | 359 | 542 | 1.07e-13 | 76.3 |
MS.gene41419.t1 | AT1G65070 | 29.570 | 186 | 118 | 5 | 648 | 822 | 359 | 542 | 1.12e-13 | 75.9 |
MS.gene41419.t1 | AT1G65070 | 30.233 | 172 | 110 | 4 | 648 | 811 | 359 | 528 | 1.38e-13 | 75.9 |
MS.gene41419.t1 | AT3G24495 | 25.067 | 375 | 231 | 12 | 1 | 361 | 287 | 625 | 1.74e-13 | 75.5 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTAAAAGTGCCTTTAAAT+TGG | 0.154160 | 1.4:+78480023 | MS.gene41419:CDS |
AATCACACTCTTACTATATT+TGG | 0.156585 | 1.4:+78478256 | MS.gene41419:CDS |
TTTACTTTAACCCAATTTAA+AGG | 0.163743 | 1.4:-78480034 | None:intergenic |
TCTCCTGCTGAGTTGCTTCT+TGG | 0.182974 | 1.4:+78473448 | MS.gene41419:CDS |
TTGGAATATATGTGTGTTTC+TGG | 0.185265 | 1.4:+78479396 | MS.gene41419:CDS |
TCGACGGGAGATGTTGTTTA+TGG | 0.202150 | 1.4:+78473370 | MS.gene41419:CDS |
GTTTACTAGTGCTTCTAATT+TGG | 0.208298 | 1.4:-78481965 | None:intergenic |
TGCCATTCTTTCAAGAAATA+AGG | 0.210957 | 1.4:+78480252 | MS.gene41419:CDS |
ACGGCTCGGAATGCGGAAAT+TGG | 0.216042 | 1.4:+78479377 | MS.gene41419:CDS |
GCATCCTCTACAAGTGTTAT+TGG | 0.222801 | 1.4:+78479069 | MS.gene41419:CDS |
GCTTGAGGCGGCGCATGATA+TGG | 0.233393 | 1.4:+78473207 | MS.gene41419:CDS |
TGTTGTGGAGAAGAGTATTT+TGG | 0.257117 | 1.4:+78473276 | MS.gene41419:CDS |
CACTGTCCGCATCAAGAATT+TGG | 0.274491 | 1.4:+78482060 | MS.gene41419:CDS |
TGAGAATGCTGCTAGGGTTT+TGG | 0.275182 | 1.4:+78472982 | MS.gene41419:CDS |
GTTTCCAGGCTAGCAATCTT+TGG | 0.287281 | 1.4:-78481198 | None:intergenic |
GATCTATTATTAGTTATTAC+TGG | 0.290771 | 1.4:+78475158 | MS.gene41419:intron |
GATTGTCACTGGACCCAATA+TGG | 0.295792 | 1.4:+78480602 | MS.gene41419:CDS |
GCGTGCATGCTTGTATCATT+TGG | 0.302157 | 1.4:-78480561 | None:intergenic |
CCTGACAAACCTCGACAAAA+TGG | 0.311412 | 1.4:-78473166 | None:intergenic |
AAGTCTCGCTCAATTCTTCT+AGG | 0.316427 | 1.4:-78481020 | None:intergenic |
CTCTTACTATATTTGGTTCC+AGG | 0.318033 | 1.4:+78478263 | MS.gene41419:CDS |
GTATATCAGGTGCCCGGCCC+AGG | 0.325648 | 1.4:-78478595 | None:intergenic |
AGCCTGGAAATTCAGTTTCC+AGG | 0.335870 | 1.4:-78481212 | None:intergenic |
TTGGATAATGAGTGACAAAT+AGG | 0.337443 | 1.4:-78481179 | None:intergenic |
TCTTGCTCTTGATCAATAAC+AGG | 0.342654 | 1.4:-78482030 | None:intergenic |
CTTGAGGCGGCGCATGATAT+GGG | 0.347667 | 1.4:+78473208 | MS.gene41419:CDS |
GTAATCCCACGCTGTATATC+AGG | 0.349821 | 1.4:-78478608 | None:intergenic |
GGTGTTTCTGAGAGAAGTTT+TGG | 0.350688 | 1.4:+78481336 | MS.gene41419:CDS |
TCCAATGCTGTCACTACTTC+AGG | 0.352461 | 1.4:-78480088 | None:intergenic |
CGTGCATGCTTGTATCATTT+GGG | 0.357137 | 1.4:-78480560 | None:intergenic |
GTTCCAGGCTTCTTAAACAT+TGG | 0.360925 | 1.4:+78478278 | MS.gene41419:CDS |
AACCTTATTTCTTGAAAGAA+TGG | 0.366750 | 1.4:-78480254 | None:intergenic |
GTTCAGATGCAAATTTGTTC+TGG | 0.369966 | 1.4:+78480384 | MS.gene41419:CDS |
TGAGTTGGCTGTCGAAGCTT+TGG | 0.374349 | 1.4:+78477244 | MS.gene41419:CDS |
TGTAAAAGTGCCTTTAAATT+GGG | 0.375046 | 1.4:+78480024 | MS.gene41419:CDS |
TACTGTCAGAAGCGCCCATC+CGG | 0.387453 | 1.4:-78480975 | None:intergenic |
TCCGCATTCCGAGCCGTTTG+CGG | 0.388107 | 1.4:-78479371 | None:intergenic |
GAAGAATCTTGGACGCTTTG+AGG | 0.394660 | 1.4:+78478508 | MS.gene41419:CDS |
TTCTGTGCTCAGGTGCTTTG+AGG | 0.396657 | 1.4:+78477309 | MS.gene41419:CDS |
AGCTAATACACTTCAACAAC+TGG | 0.403145 | 1.4:+78477364 | MS.gene41419:CDS |
TTATCCAAAGATTGCTAGCC+TGG | 0.407892 | 1.4:+78481194 | MS.gene41419:CDS |
GTTAGCGCACATACTTTCAT+TGG | 0.412002 | 1.4:+78478562 | MS.gene41419:CDS |
ACTCTGCTTGCCAAGGAGAT+TGG | 0.413169 | 1.4:+78479127 | MS.gene41419:CDS |
AACAATGAATTGACTGAGCT+TGG | 0.417774 | 1.4:+78475312 | MS.gene41419:CDS |
CTTCAAATGGCGAATAGTTA+AGG | 0.418426 | 1.4:-78477267 | None:intergenic |
TGTAATGGTATGAAGAATCT+TGG | 0.419362 | 1.4:+78478497 | MS.gene41419:CDS |
TTCCAGGCTTCTTAAACATT+GGG | 0.420803 | 1.4:+78478279 | MS.gene41419:CDS |
ATTCGCCATTTGAAGGGATT+CGG | 0.423556 | 1.4:+78477275 | MS.gene41419:CDS |
AGTGACATCTTCATGATCAT+TGG | 0.425696 | 1.4:-78481292 | None:intergenic |
CTGGTTATACTTGATGAGCT+TGG | 0.425757 | 1.4:+78481075 | MS.gene41419:CDS |
CTTAACTATTCGCCATTTGA+AGG | 0.425842 | 1.4:+78477268 | MS.gene41419:CDS |
TTAAGTCCCATGGTTTGAAT+CGG | 0.432685 | 1.4:+78473137 | MS.gene41419:CDS |
TGGGACAAAATTATTCTGTA+AGG | 0.433808 | 1.4:-78480541 | None:intergenic |
CTGTTGCCTGCCGAGCTGCA+TGG | 0.436855 | 1.4:+78480140 | MS.gene41419:CDS |
TGAAAGTATGTGCGCTAACT+CGG | 0.437377 | 1.4:-78478558 | None:intergenic |
GATGTGAGGATTGGGATTGT+TGG | 0.441507 | 1.4:+78473337 | MS.gene41419:CDS |
AGCCTGGAAACTGAATTTCC+AGG | 0.441723 | 1.4:+78481210 | MS.gene41419:CDS |
TGGTTATACTTGATGAGCTT+GGG | 0.443899 | 1.4:+78481076 | MS.gene41419:CDS |
AGCAGAATACATGGTAGATC+AGG | 0.445656 | 1.4:+78481988 | MS.gene41419:CDS |
GAACAAATTTGCATCTGAAC+AGG | 0.446299 | 1.4:-78480381 | None:intergenic |
TGATATGCTGCTACAGAGCC+TGG | 0.451470 | 1.4:-78481228 | None:intergenic |
TGGACATTTAATCGAAAAGT+TGG | 0.456102 | 1.4:-78473049 | None:intergenic |
AAACTATTTCTCACCTCAGA+TGG | 0.458381 | 1.4:-78478656 | None:intergenic |
TGATTGACTTGTACCGCAAA+CGG | 0.460262 | 1.4:+78479358 | MS.gene41419:CDS |
ACGCTCCACACGAGCATTTG+AGG | 0.461836 | 1.4:-78475196 | None:intergenic |
ACACAACAGATAATTATTCA+TGG | 0.465974 | 1.4:-78473254 | None:intergenic |
GTTATCCCATGCAGCTCGGC+AGG | 0.468651 | 1.4:-78480146 | None:intergenic |
TACCCAATGTTTAAGAAGCC+TGG | 0.471739 | 1.4:-78478281 | None:intergenic |
GTGAGGAGGCTTGTCAGTGC+AGG | 0.472677 | 1.4:+78473073 | MS.gene41419:CDS |
TTTGAAAGAATTCTGTGCTC+AGG | 0.473475 | 1.4:+78477299 | MS.gene41419:CDS |
CAAAACCGAATCCCTTCAAA+TGG | 0.478795 | 1.4:-78477280 | None:intergenic |
GACTTGTACCGCAAACGGCT+CGG | 0.482281 | 1.4:+78479363 | MS.gene41419:CDS |
TAGATCAGGAAAAGAGTTGT+TGG | 0.485975 | 1.4:+78482002 | MS.gene41419:CDS |
ATCTGAAATCGCAGAGTCCA+TGG | 0.488575 | 1.4:+78478469 | MS.gene41419:CDS |
TAAGTCCCATGGTTTGAATC+GGG | 0.490341 | 1.4:+78473138 | MS.gene41419:CDS |
ATCAGCAAAACTGCATGTCC+TGG | 0.492985 | 1.4:+78480939 | MS.gene41419:CDS |
TGGTGTAACTCACTTGATAG+AGG | 0.496881 | 1.4:+78479416 | MS.gene41419:CDS |
GTGAATTTACCTGTGCAAGC+TGG | 0.497088 | 1.4:-78481371 | None:intergenic |
AACTATTTCTCACCTCAGAT+GGG | 0.502885 | 1.4:-78478655 | None:intergenic |
ATTGTCACTGGACCCAATAT+GGG | 0.503569 | 1.4:+78480603 | MS.gene41419:CDS |
TAATTATCTGTTGTGTGTTG+TGG | 0.504102 | 1.4:+78473261 | MS.gene41419:CDS |
TAGATGTACAGAACGTTCAC+TGG | 0.510813 | 1.4:+78481056 | MS.gene41419:CDS |
TGTTGCCTGCCGAGCTGCAT+GGG | 0.510976 | 1.4:+78480141 | MS.gene41419:CDS |
TTGAGGCGGCGCATGATATG+GGG | 0.511532 | 1.4:+78473209 | MS.gene41419:CDS |
CACTGACAAGCCTCCTCACA+TGG | 0.514857 | 1.4:-78473069 | None:intergenic |
CACGCTGTATATCAGGTGCC+CGG | 0.515705 | 1.4:-78478601 | None:intergenic |
TCATATTTGTCCAATCTCCT+TGG | 0.516334 | 1.4:-78479137 | None:intergenic |
CTAGTGCTTGAACAGAAGCT+TGG | 0.516722 | 1.4:-78480204 | None:intergenic |
TCGCAAAGACATTAGTTAGC+AGG | 0.516902 | 1.4:+78482193 | MS.gene41419:CDS |
TCTGATCGCTCTCATGGCTC+AGG | 0.523504 | 1.4:+78480656 | MS.gene41419:CDS |
ATTAAGACGAGCAGCAATCA+AGG | 0.523706 | 1.4:-78478441 | None:intergenic |
TGAATTTACCTGTGCAAGCT+GGG | 0.527013 | 1.4:-78481370 | None:intergenic |
CAAAACTGCATGTCCTGGAC+GGG | 0.528188 | 1.4:+78480944 | MS.gene41419:CDS |
TAAGGTTGCCCAGCTTGCAC+AGG | 0.528331 | 1.4:+78481362 | MS.gene41419:CDS |
GAGTCCATGGGAACTTGTAA+TGG | 0.530308 | 1.4:+78478482 | MS.gene41419:CDS |
TTTGGGTATTTATGCTCACA+TGG | 0.530710 | 1.4:+78473000 | MS.gene41419:CDS |
GTCAGTGCAGGGTATAAAGT+TGG | 0.531280 | 1.4:+78473085 | MS.gene41419:CDS |
TCAAGGTTTGATCACACAAT+GGG | 0.532861 | 1.4:-78478424 | None:intergenic |
TCTCCAAGAAGCAACTCAGC+AGG | 0.533436 | 1.4:-78473451 | None:intergenic |
CTAGTAAACAGCAGAATACA+TGG | 0.536333 | 1.4:+78481979 | MS.gene41419:CDS |
CTTCGACAGCCAACTCAGGC+AGG | 0.536386 | 1.4:-78477238 | None:intergenic |
TCCCATGGTTTGAATCGGGC+CGG | 0.538865 | 1.4:+78473142 | MS.gene41419:CDS |
ATACTTGATGAGCTTGGGAG+AGG | 0.542558 | 1.4:+78481081 | MS.gene41419:CDS |
GAAAGTATGTGCGCTAACTC+GGG | 0.542970 | 1.4:-78478557 | None:intergenic |
TTGAATTATGGTGTGGAAGG+TGG | 0.544265 | 1.4:+78473310 | MS.gene41419:CDS |
ATAGCACAAAGAAAACAATT+CGG | 0.544679 | 1.4:+78480056 | MS.gene41419:CDS |
TGAGGCGGCGCATGATATGG+GGG | 0.545773 | 1.4:+78473210 | MS.gene41419:CDS |
AAAGAATGGCAAGTGAATGC+AGG | 0.546419 | 1.4:-78480240 | None:intergenic |
GAGTACTGTCAGATTGTCAC+TGG | 0.546918 | 1.4:+78480591 | MS.gene41419:CDS |
GGACGGGATTTACACCCGGA+TGG | 0.546986 | 1.4:+78480960 | MS.gene41419:CDS |
TCCGGGTGTAAATCCCGTCC+AGG | 0.547902 | 1.4:-78480957 | None:intergenic |
AGTATCTCTGATCGCTCTCA+TGG | 0.548767 | 1.4:+78480650 | MS.gene41419:CDS |
TATATCAGGTGCCCGGCCCA+GGG | 0.549217 | 1.4:-78478594 | None:intergenic |
TGCTGATGATGCTGGTACAA+AGG | 0.549322 | 1.4:-78480923 | None:intergenic |
GACGGGATTTACACCCGGAT+GGG | 0.551654 | 1.4:+78480961 | MS.gene41419:CDS |
TACGAAGGCCACGCTTGAGG+CGG | 0.553669 | 1.4:+78473195 | MS.gene41419:CDS |
GACCGGCCCGATTCAAACCA+TGG | 0.555950 | 1.4:-78473144 | None:intergenic |
TTAACTATTCGCCATTTGAA+GGG | 0.556174 | 1.4:+78477269 | MS.gene41419:CDS |
TGAGAGCGATCAGAGATACT+TGG | 0.556186 | 1.4:-78480647 | None:intergenic |
CTCGCTCAATTCTTCTAGGA+AGG | 0.557105 | 1.4:-78481016 | None:intergenic |
ATCATGCGCCGCCTCAAGCG+TGG | 0.557718 | 1.4:-78473203 | None:intergenic |
CTGCATGGGATAACTTTCTG+AGG | 0.559444 | 1.4:+78480155 | MS.gene41419:CDS |
GGTGATGAACCTGCCTGAGT+TGG | 0.560257 | 1.4:+78477229 | MS.gene41419:CDS |
TCTGAAGCAGAAGAAAAGCT+TGG | 0.568542 | 1.4:+78481155 | MS.gene41419:CDS |
TACAAGTACGCATGATGGCA+TGG | 0.572756 | 1.4:+78481104 | MS.gene41419:CDS |
TTCGATTAAATGTCCATGTG+AGG | 0.574732 | 1.4:+78473056 | MS.gene41419:CDS |
TTCAGCAAAAGCGCCTCCGT+TGG | 0.576824 | 1.4:-78475238 | None:intergenic |
GAGGATTGGGATTGTTGGTG+TGG | 0.577876 | 1.4:+78473342 | MS.gene41419:CDS |
CGGCTTCAGCAACTTAACAT+AGG | 0.578965 | 1.4:+78478982 | MS.gene41419:CDS |
GTTGGTGTGGAGATATCGAC+GGG | 0.579122 | 1.4:+78473355 | MS.gene41419:CDS |
ATTTCTGTATTGCTTACGAA+GGG | 0.580218 | 1.4:-78477332 | None:intergenic |
ATAGGTAACTACAGCTCGAA+AGG | 0.580422 | 1.4:+78479302 | MS.gene41419:intron |
ACCGCAAACGGCTCGGAATG+CGG | 0.582344 | 1.4:+78479370 | MS.gene41419:CDS |
AAGATGCTGAGAATGCTGCT+AGG | 0.582576 | 1.4:+78472975 | MS.gene41419:CDS |
GCAAAACTGCATGTCCTGGA+CGG | 0.584058 | 1.4:+78480943 | MS.gene41419:CDS |
CAGATGGGGTAGCAGTGCGA+TGG | 0.584605 | 1.4:-78478640 | None:intergenic |
AATGAAGACTCTGCTTGCCA+AGG | 0.585602 | 1.4:+78479120 | MS.gene41419:CDS |
ACCCTCCTCAAATGCTCGTG+TGG | 0.586421 | 1.4:+78475191 | MS.gene41419:CDS |
TCCTGAAGTAGTGACAGCAT+TGG | 0.587314 | 1.4:+78480087 | MS.gene41419:CDS |
AGATGCTGAGAATGCTGCTA+GGG | 0.587696 | 1.4:+78472976 | MS.gene41419:CDS |
GATTAAATGTCCATGTGAGG+AGG | 0.587869 | 1.4:+78473059 | MS.gene41419:CDS |
TCCTGGACGGGATTTACACC+CGG | 0.588888 | 1.4:+78480956 | MS.gene41419:CDS |
AAAGCTTCGACAGCCAACTC+AGG | 0.592282 | 1.4:-78477242 | None:intergenic |
ACCGGCCCGATTCAAACCAT+GGG | 0.592594 | 1.4:-78473143 | None:intergenic |
ACTGCTGCTATTAAGTCCCA+TGG | 0.594444 | 1.4:+78473127 | MS.gene41419:CDS |
CATTAGCCGAGCTATTGTCA+TGG | 0.594677 | 1.4:+78481939 | MS.gene41419:CDS |
ACTGTCAGAAGCGCCCATCC+GGG | 0.595251 | 1.4:-78480974 | None:intergenic |
TCTGAAATCGCAGAGTCCAT+GGG | 0.597436 | 1.4:+78478470 | MS.gene41419:CDS |
CATACCATTACAAGTTCCCA+TGG | 0.599441 | 1.4:-78478486 | None:intergenic |
TTGTCACTGGACCCAATATG+GGG | 0.599824 | 1.4:+78480604 | MS.gene41419:CDS |
AATCTGACAGTACTCTCTAT+CGG | 0.600944 | 1.4:-78480583 | None:intergenic |
ATTACCAATAACACTTGTAG+AGG | 0.603159 | 1.4:-78479073 | None:intergenic |
CATTTCTGTATTGCTTACGA+AGG | 0.606746 | 1.4:-78477333 | None:intergenic |
AGATAAAATAGCTTGAACAA+TGG | 0.606851 | 1.4:-78478950 | None:intergenic |
TGAGGAGGCTTGTCAGTGCA+GGG | 0.607620 | 1.4:+78473074 | MS.gene41419:CDS |
GAAAGTTATCCCATGCAGCT+CGG | 0.610699 | 1.4:-78480150 | None:intergenic |
CAAACCTCGACAAAATGGAC+CGG | 0.614082 | 1.4:-78473161 | None:intergenic |
CAAATTCTTGATGCGGACAG+TGG | 0.615135 | 1.4:-78482059 | None:intergenic |
TGGAAGCCATGACAATAGCT+CGG | 0.615635 | 1.4:-78481945 | None:intergenic |
GTATACGAAGGCCACGCTTG+AGG | 0.615784 | 1.4:+78473192 | MS.gene41419:CDS |
TATCTATATAAACTCGTACC+TGG | 0.617343 | 1.4:+78481315 | MS.gene41419:CDS |
AGAGGTACAAGTACGCATGA+TGG | 0.618922 | 1.4:+78481099 | MS.gene41419:CDS |
AAATTGAATTATGGTGTGGA+AGG | 0.618948 | 1.4:+78473307 | MS.gene41419:CDS |
AACTGAGGAGCAATTTCCAG+AGG | 0.619772 | 1.4:+78479167 | MS.gene41419:CDS |
TTTACTCGCATCATCGTGTG+AGG | 0.620272 | 1.4:-78481265 | None:intergenic |
ATCAAGGTTTGATCACACAA+TGG | 0.623420 | 1.4:-78478425 | None:intergenic |
CAGCAACTTAACATAGGAGA+GGG | 0.625229 | 1.4:+78478988 | MS.gene41419:CDS |
TCGCACTGCTACCCCATCTG+AGG | 0.626360 | 1.4:+78478643 | MS.gene41419:CDS |
TCACGAGATTGCTTCACCAA+CGG | 0.627672 | 1.4:+78475222 | MS.gene41419:CDS |
AAGTCAGCAGATGGTAGTGA+AGG | 0.628549 | 1.4:+78475335 | MS.gene41419:CDS |
AATGCTGTCACTACTTCAGG+AGG | 0.628596 | 1.4:-78480085 | None:intergenic |
TGCATGGGATAACTTTCTGA+GGG | 0.633306 | 1.4:+78480156 | MS.gene41419:CDS |
TGTTGGTGTGGAGATATCGA+CGG | 0.633351 | 1.4:+78473354 | MS.gene41419:CDS |
GGGGAGGGGAAGATGAGTGT+GGG | 0.633547 | 1.4:+78473230 | MS.gene41419:CDS |
GCTCGGCTAATGCAATGTGA+TGG | 0.638140 | 1.4:-78481928 | None:intergenic |
TAATACACTTCAACAACTGG+AGG | 0.638267 | 1.4:+78477367 | MS.gene41419:CDS |
TGAGCTTGGAAGTCAGCAGA+TGG | 0.640911 | 1.4:+78475326 | MS.gene41419:CDS |
GAGGCGGCGCATGATATGGG+GGG | 0.647351 | 1.4:+78473211 | MS.gene41419:CDS |
AACAGTGATGGATCTGCGAG+TGG | 0.647470 | 1.4:+78478214 | MS.gene41419:CDS |
TTTGTCAGGGTTGTATACGA+AGG | 0.649142 | 1.4:+78473180 | MS.gene41419:CDS |
GCTTCTGACAGTATTCAGCA+AGG | 0.649318 | 1.4:+78480985 | MS.gene41419:CDS |
ACTATTTCTCACCTCAGATG+GGG | 0.651307 | 1.4:-78478654 | None:intergenic |
CTCCACACGAGCATTTGAGG+AGG | 0.652649 | 1.4:-78475193 | None:intergenic |
CTTCTGACAGTATTCAGCAA+GGG | 0.653317 | 1.4:+78480986 | MS.gene41419:CDS |
GCTCTACCAAATTCTTGATG+CGG | 0.657214 | 1.4:-78482066 | None:intergenic |
AAATATGATCATTGCAACTG+AGG | 0.660596 | 1.4:+78479152 | MS.gene41419:CDS |
GTGATTCATAACTTGCAGCA+AGG | 0.661421 | 1.4:-78478239 | None:intergenic |
TCCACACGAGCATTTGAGGA+GGG | 0.663274 | 1.4:-78475192 | None:intergenic |
TCTTTCAAAACAAACCGAGA+AGG | 0.665810 | 1.4:+78473477 | MS.gene41419:CDS |
TCAGCAACTTAACATAGGAG+AGG | 0.666505 | 1.4:+78478987 | MS.gene41419:CDS |
CGGGCACCTGATATACAGCG+TGG | 0.670207 | 1.4:+78478602 | MS.gene41419:CDS |
GTCACTGGACCCAATATGGG+GGG | 0.673063 | 1.4:+78480606 | MS.gene41419:CDS |
GGGCACCTGATATACAGCGT+GGG | 0.676024 | 1.4:+78478603 | MS.gene41419:CDS |
ATGCTGTCACTACTTCAGGA+GGG | 0.678638 | 1.4:-78480084 | None:intergenic |
TGTCACTGGACCCAATATGG+GGG | 0.681502 | 1.4:+78480605 | MS.gene41419:CDS |
GTTGGTGAAGCAATCTCGTG+AGG | 0.685113 | 1.4:-78475220 | None:intergenic |
CGAGATTGCTTCACCAACGG+AGG | 0.686562 | 1.4:+78475225 | MS.gene41419:CDS |
AAACTTCTCTCAGAAACACC+AGG | 0.690326 | 1.4:-78481333 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 78472938 | 78482218 | 78472938 | ID=MS.gene41419 |
chr1.4 | mRNA | 78472938 | 78482218 | 78472938 | ID=MS.gene41419.t1;Parent=MS.gene41419 |
chr1.4 | exon | 78472938 | 78473498 | 78472938 | ID=MS.gene41419.t1.exon1;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78472938 | 78473498 | 78472938 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78475171 | 78475356 | 78475171 | ID=MS.gene41419.t1.exon2;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78475171 | 78475356 | 78475171 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78477227 | 78477388 | 78477227 | ID=MS.gene41419.t1.exon3;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78477227 | 78477388 | 78477227 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78478202 | 78478300 | 78478202 | ID=MS.gene41419.t1.exon4;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78478202 | 78478300 | 78478202 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78478416 | 78478664 | 78478416 | ID=MS.gene41419.t1.exon5;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78478416 | 78478664 | 78478416 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78478943 | 78479188 | 78478943 | ID=MS.gene41419.t1.exon6;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78478943 | 78479188 | 78478943 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78479306 | 78479437 | 78479306 | ID=MS.gene41419.t1.exon7;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78479306 | 78479437 | 78479306 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78480013 | 78480273 | 78480013 | ID=MS.gene41419.t1.exon8;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78480013 | 78480273 | 78480013 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78480345 | 78480416 | 78480345 | ID=MS.gene41419.t1.exon9;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78480345 | 78480416 | 78480345 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78480528 | 78480677 | 78480528 | ID=MS.gene41419.t1.exon10;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78480528 | 78480677 | 78480528 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78480916 | 78481383 | 78480916 | ID=MS.gene41419.t1.exon11;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78480916 | 78481383 | 78480916 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
chr1.4 | exon | 78481925 | 78482218 | 78481925 | ID=MS.gene41419.t1.exon12;Parent=MS.gene41419.t1 |
chr1.4 | CDS | 78481925 | 78482218 | 78481925 | ID=cds.MS.gene41419.t1;Parent=MS.gene41419.t1 |
Gene Sequence |
Protein sequence |