AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41851

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41851.t1 MTR_7g087590 98.876 267 3 0 1 267 1 267 0.0 539
MS.gene41851.t1 MTR_4g108080 36.029 136 87 0 13 148 7 142 3.45e-29 108
MS.gene41851.t1 MTR_8g468530 35.294 136 88 0 13 148 23 158 1.09e-28 107
MS.gene41851.t1 MTR_2g078010 38.158 152 90 1 4 155 3 150 1.54e-28 106
MS.gene41851.t1 MTR_2g078010 40.945 127 71 1 4 130 3 125 4.58e-27 102
MS.gene41851.t1 MTR_3g098780 36.434 129 81 1 29 156 22 150 4.47e-26 101
MS.gene41851.t1 MTR_3g098780 36.434 129 81 1 29 156 46 174 8.71e-26 101
MS.gene41851.t1 MTR_5g075580 34.965 143 93 0 13 155 4 146 7.31e-25 97.1
MS.gene41851.t1 MTR_3g062450 34.965 143 93 0 13 155 4 146 7.31e-25 97.1
MS.gene41851.t1 MTR_1g021150 34.965 143 93 0 13 155 4 146 7.79e-25 97.1
MS.gene41851.t1 MTR_8g071040 34.266 143 94 0 13 155 4 146 9.03e-25 96.7
MS.gene41851.t1 MTR_3g110110 36.242 149 91 3 14 158 7 155 9.18e-25 97.1
MS.gene41851.t1 MTR_2g078010 34.940 166 90 2 4 155 3 164 1.83e-24 96.7
MS.gene41851.t1 MTR_7g116940 34.266 143 94 0 13 155 4 146 3.28e-24 95.5
MS.gene41851.t1 MTR_2g078010 41.818 110 60 1 4 113 3 108 9.70e-24 92.8
MS.gene41851.t1 MTR_4g073240 34.532 139 91 0 13 151 4 142 1.08e-23 94.0
MS.gene41851.t1 MTR_4g108080 35.714 112 71 1 38 148 31 142 3.69e-22 90.1
MS.gene41851.t1 MTR_7g116940 33.333 150 93 1 13 155 4 153 6.80e-22 89.4
MS.gene41851.t1 MTR_5g075580 37.500 112 70 0 44 155 6 117 8.66e-21 85.5
MS.gene41851.t1 MTR_4g108080 34.615 104 68 0 13 116 7 110 3.55e-20 84.0
MS.gene41851.t1 MTR_7g116940 37.736 106 66 0 13 118 4 109 3.57e-20 84.0
MS.gene41851.t1 MTR_4g073240 37.037 108 68 0 44 151 6 113 1.68e-19 82.0
MS.gene41851.t1 MTR_1g021150 37.500 112 70 0 44 155 43 154 2.13e-19 82.8
MS.gene41851.t1 MTR_1g095510 32.192 146 95 3 10 152 41 185 1.94e-18 81.3
MS.gene41851.t1 MTR_8g085690 29.921 127 89 0 13 139 25 151 5.14e-18 79.3
MS.gene41851.t1 MTR_4g094872 35.849 106 66 1 46 149 45 150 8.79e-18 78.6
MS.gene41851.t1 MTR_1g095510 32.540 126 82 2 29 152 7 131 1.31e-17 77.4
MS.gene41851.t1 MTR_8g028920 27.692 130 92 2 31 158 21 150 3.30e-17 77.8
MS.gene41851.t1 MTR_4g076200 30.968 155 99 2 3 150 18 171 3.50e-17 77.4
MS.gene41851.t1 MTR_5g009020 31.915 141 95 1 10 150 32 171 6.95e-17 76.6
MS.gene41851.t1 MTR_8g098595 28.462 130 91 2 31 158 6 135 7.77e-17 76.3
MS.gene41851.t1 MTR_5g016630 30.986 142 91 3 14 148 8 149 1.04e-16 75.9
MS.gene41851.t1 MTR_8g028920 29.091 110 76 2 51 158 2 111 2.13e-14 68.9
MS.gene41851.t1 MTR_4g076200 31.967 122 82 1 29 150 10 130 2.68e-14 68.6
MS.gene41851.t1 MTR_1g095510 30.631 111 76 1 10 119 41 151 5.77e-14 68.6
MS.gene41851.t1 MTR_4g106690 26.016 123 89 2 36 156 26 148 1.40e-12 65.1
MS.gene41851.t1 MTR_5g019480 33.684 95 63 0 54 148 24 118 2.47e-12 63.2
MS.gene41851.t1 MTR_5g019480 33.000 100 67 0 49 148 70 169 2.58e-12 64.3
MS.gene41851.t1 MTR_5g019480 33.684 95 63 0 54 148 72 166 2.71e-12 64.3
MS.gene41851.t1 MTR_4g063490 25.397 126 81 1 33 145 28 153 3.10e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41851.t1 AT5G05080 68.914 267 67 2 1 267 1 251 1.59e-129 367
MS.gene41851.t1 AT5G05080 68.914 267 67 2 1 267 1 251 1.59e-129 367
MS.gene41851.t1 AT5G05080 68.914 267 67 2 1 267 1 251 1.59e-129 367
MS.gene41851.t1 AT5G05080 68.914 267 67 2 1 267 1 251 1.59e-129 367
MS.gene41851.t1 AT2G02760 35.294 136 88 0 13 148 7 142 7.95e-29 107
MS.gene41851.t1 AT2G02760 35.294 136 88 0 13 148 7 142 7.95e-29 107
MS.gene41851.t1 AT2G02760 35.294 136 88 0 13 148 7 142 7.95e-29 107
MS.gene41851.t1 AT2G02760 35.294 136 88 0 13 148 7 142 7.95e-29 107
MS.gene41851.t1 AT1G14400 35.294 136 88 0 13 148 7 142 1.08e-28 107
MS.gene41851.t1 AT1G14400 35.294 136 88 0 13 148 7 142 1.08e-28 107
MS.gene41851.t1 AT1G78870 37.500 152 91 1 4 155 3 150 7.15e-28 105
MS.gene41851.t1 AT1G16890 36.842 152 92 1 4 155 3 150 2.18e-27 103
MS.gene41851.t1 AT5G50870 33.793 145 94 2 14 156 6 150 2.38e-26 102
MS.gene41851.t1 AT5G62540 35.338 133 86 0 13 145 7 139 3.34e-26 100
MS.gene41851.t1 AT1G16890 34.591 159 95 2 4 155 3 159 2.02e-25 99.0
MS.gene41851.t1 AT5G41700 34.965 143 93 0 13 155 4 146 8.33e-25 97.1
MS.gene41851.t1 AT5G41700 34.965 143 93 0 13 155 4 146 8.33e-25 97.1
MS.gene41851.t1 AT5G41700 34.965 143 93 0 13 155 4 146 8.33e-25 97.1
MS.gene41851.t1 AT4G27960 34.266 143 94 0 13 155 4 146 8.69e-25 97.1
MS.gene41851.t1 AT5G53300 34.266 143 94 0 13 155 4 146 1.46e-24 96.3
MS.gene41851.t1 AT5G53300 34.266 143 94 0 13 155 4 146 1.46e-24 96.3
MS.gene41851.t1 AT5G53300 34.266 143 94 0 13 155 4 146 1.46e-24 96.3
MS.gene41851.t1 AT1G64230 33.566 143 95 0 13 155 4 146 2.30e-24 95.9
MS.gene41851.t1 AT1G64230 33.566 143 95 0 13 155 4 146 2.30e-24 95.9
MS.gene41851.t1 AT2G16740 34.965 143 93 0 13 155 4 146 3.47e-24 95.1
MS.gene41851.t1 AT3G08690 33.566 143 95 0 13 155 4 146 5.52e-24 94.7
MS.gene41851.t1 AT3G08690 33.566 143 95 0 13 155 4 146 5.52e-24 94.7
MS.gene41851.t1 AT5G41700 35.862 145 90 2 13 155 4 147 1.12e-23 94.0
MS.gene41851.t1 AT5G56150 32.867 143 96 0 13 155 4 146 1.44e-23 93.6
MS.gene41851.t1 AT1G78870 40.909 110 61 1 4 113 3 108 1.73e-23 92.4
MS.gene41851.t1 AT4G27960 34.266 143 94 0 13 155 34 176 2.25e-23 94.0
MS.gene41851.t1 AT1G64230 32.895 152 93 2 13 155 4 155 2.80e-23 93.2
MS.gene41851.t1 AT5G25760 34.899 149 93 3 14 158 7 155 2.86e-23 93.2
MS.gene41851.t1 AT5G25760 34.899 149 93 3 14 158 7 155 2.86e-23 93.2
MS.gene41851.t1 AT5G50870 31.410 156 94 3 14 156 6 161 3.29e-23 94.4
MS.gene41851.t1 AT1G16890 40.909 110 65 0 46 155 8 117 4.30e-23 91.7
MS.gene41851.t1 AT1G78870 40.909 110 65 0 46 155 8 117 5.54e-23 91.3
MS.gene41851.t1 AT3G24515 37.342 158 86 3 14 158 10 167 1.79e-22 95.9
MS.gene41851.t1 AT3G13550 30.556 144 100 0 13 156 39 182 6.76e-22 90.1
MS.gene41851.t1 AT1G36340 41.071 112 66 0 44 155 41 152 1.32e-21 88.6
MS.gene41851.t1 AT1G36340 41.071 112 66 0 44 155 41 152 1.32e-21 88.6
MS.gene41851.t1 AT3G08700 31.944 144 97 1 13 155 4 147 1.73e-21 88.2
MS.gene41851.t1 AT3G08700 31.944 144 97 1 13 155 4 147 1.73e-21 88.2
MS.gene41851.t1 AT1G78870 40.541 111 65 1 46 155 8 118 3.64e-21 86.7
MS.gene41851.t1 AT5G41700 37.500 104 65 0 13 116 4 107 4.83e-21 87.0
MS.gene41851.t1 AT3G24515 36.842 133 77 2 30 158 63 192 2.92e-20 89.7
MS.gene41851.t1 AT3G13550 32.143 112 76 0 13 124 39 150 8.40e-20 84.3
MS.gene41851.t1 AT5G56150 35.849 106 68 0 13 118 4 109 9.26e-20 82.4
MS.gene41851.t1 AT5G53300 36.792 106 66 1 13 117 4 109 9.44e-20 82.4
MS.gene41851.t1 AT1G64230 35.714 112 72 0 44 155 77 188 1.19e-19 84.3
MS.gene41851.t1 AT1G64230 35.714 112 72 0 44 155 77 188 1.19e-19 84.3
MS.gene41851.t1 AT3G20060 33.333 141 93 1 10 150 36 175 3.94e-18 80.1
MS.gene41851.t1 AT1G50490 34.043 141 92 1 10 150 35 174 1.52e-17 78.6
MS.gene41851.t1 AT1G63800 29.231 130 90 2 31 158 6 135 2.93e-17 77.4
MS.gene41851.t1 AT1G63800 29.231 130 90 2 31 158 21 150 3.00e-17 77.8
MS.gene41851.t1 AT3G20060 34.426 122 79 1 29 150 10 130 4.12e-16 73.6
MS.gene41851.t1 AT5G41340 27.907 129 91 2 31 157 21 149 1.21e-15 73.6
MS.gene41851.t1 AT3G57870 30.070 143 93 3 14 149 9 151 1.42e-15 72.8
MS.gene41851.t1 AT2G46030 28.462 130 91 2 31 158 21 150 4.18e-15 72.0
MS.gene41851.t1 AT2G46030 28.462 130 91 2 31 158 21 150 4.18e-15 72.0
MS.gene41851.t1 AT2G46030 28.462 130 91 2 31 158 24 153 8.56e-15 71.2
MS.gene41851.t1 AT2G46030 28.462 130 91 2 31 158 24 153 8.56e-15 71.2
MS.gene41851.t1 AT2G46030 28.462 130 91 2 31 158 93 222 2.39e-14 71.2
MS.gene41851.t1 AT2G18600 34.000 100 66 0 49 148 69 168 1.47e-13 67.8
MS.gene41851.t1 AT2G18600 34.000 100 66 0 49 148 69 168 1.47e-13 67.8
MS.gene41851.t1 AT4G36800 30.986 142 92 3 14 152 34 172 2.34e-13 67.4
MS.gene41851.t1 AT4G36800 30.986 142 92 3 14 152 34 172 2.34e-13 67.4
MS.gene41851.t1 AT5G41340 29.245 106 73 2 54 157 9 114 1.01e-12 64.7
MS.gene41851.t1 AT2G32790 35.398 113 73 0 44 156 64 176 1.14e-11 62.4

Find 60 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCACTGTTGGCAATATT+TGG 0.133789 7.3:+21503175 None:intergenic
AGTTCATTTAAAGCTGATTC+TGG 0.328582 7.3:+21502943 None:intergenic
TTGTGTCAACGCGCTCAAAA+AGG 0.346414 7.3:-21503149 MS.gene41851:CDS
TCCTCTTGCTCCAGTGGTTG+AGG 0.353319 7.3:+21502544 None:intergenic
CCCATAATCAACAGGTTGTT+AGG 0.362147 7.3:-21502987 MS.gene41851:intron
AGAATCAGCTTTAAATGAAC+TGG 0.367979 7.3:-21502941 MS.gene41851:CDS
GCAAGTTGCCTTATCACATT+AGG 0.371102 7.3:+21503723 None:intergenic
CCTCTTGCTCCAGTGGTTGA+GGG 0.414800 7.3:+21502545 None:intergenic
ATTCAGAGCAGTAGTTGATT+CGG 0.434687 7.3:+21502649 None:intergenic
TTTAAAGCTGATTCTGGAAA+CGG 0.436344 7.3:+21502949 None:intergenic
AATATTTGGATGGAAAATCT+TGG 0.449656 7.3:+21503189 None:intergenic
GGAATCCTAGCCTTGGGTTA+CGG 0.454102 7.3:-21503123 MS.gene41851:CDS
AAGAGGAACTAGTCAGGATC+AGG 0.466133 7.3:-21502528 MS.gene41851:CDS
AGGATTGGAATCCTAGCCTT+GGG 0.467861 7.3:-21503129 MS.gene41851:CDS
CGGAAAACTCCACTCTCATA+AGG 0.469183 7.3:+21503507 None:intergenic
CTGTCATTGCCCTCAACCAC+TGG 0.475571 7.3:-21502554 MS.gene41851:CDS
GACATCAAAACCATGCCATC+AGG 0.476543 7.3:-21502593 MS.gene41851:CDS
TTTCCACACTCTCCTCCTAA+AGG 0.481533 7.3:-21503459 MS.gene41851:intron
ATCTTCCGCCTAATGTGATA+AGG 0.491201 7.3:-21503731 MS.gene41851:CDS
CTGCTCATGCACCACAAAAG+AGG 0.495555 7.3:-21502442 MS.gene41851:CDS
AACTTTAATGCCCTCAGGAG+GGG 0.501972 7.3:+21503674 None:intergenic
ACTAGTTCCTCTTGCTCCAG+TGG 0.503278 7.3:+21502538 None:intergenic
AAGGATTGGAATCCTAGCCT+TGG 0.504209 7.3:-21503130 MS.gene41851:CDS
CACTGTTGGCAATATTTGGA+TGG 0.511422 7.3:+21503179 None:intergenic
GACACAAATCTCTCCACTGT+TGG 0.513774 7.3:+21503165 None:intergenic
TTTGCTGACATTGAAGGCCC+TGG 0.514631 7.3:-21503621 MS.gene41851:intron
ACTACTGCTTGAAAATTATG+AGG 0.514928 7.3:-21502911 MS.gene41851:CDS
TATTTAAACACACCTTTAGG+AGG 0.530844 7.3:+21503447 None:intergenic
TGGAGCAAGAGGAACTAGTC+AGG 0.535304 7.3:-21502534 MS.gene41851:CDS
CATTGGAACTGCTAAAGCTC+AGG 0.536497 7.3:-21502417 MS.gene41851:CDS
TAGTCAGGATCAGGCAGTAG+TGG 0.540085 7.3:-21502519 MS.gene41851:CDS
CCCTCAACCACTGGAGCAAG+AGG 0.542063 7.3:-21502545 MS.gene41851:CDS
CCAAAGCCGAAATTCAAAAG+TGG 0.542941 7.3:-21502680 MS.gene41851:CDS
ACGACAACTTTAATGCCCTC+AGG 0.561456 7.3:+21503669 None:intergenic
GCACCACAAAAGAGGGACAT+TGG 0.563104 7.3:-21502434 MS.gene41851:CDS
CAGAGCAGCACCTGATGGCA+TGG 0.564545 7.3:+21502583 None:intergenic
TGCTCATGCACCACAAAAGA+GGG 0.567894 7.3:-21502441 MS.gene41851:CDS
TAATGTTTCTTCTGCTGCCG+CGG 0.572323 7.3:-21502474 MS.gene41851:CDS
TCAGCTTTAAATGAACTGGC+TGG 0.575529 7.3:-21502937 MS.gene41851:CDS
TGTGATAAGGCAACTTGCCA+AGG 0.579080 7.3:-21503718 MS.gene41851:CDS
AGGAGTATGCTAGACATGCC+AGG 0.585519 7.3:-21502891 MS.gene41851:intron
TCTTGATGAAACCCCTCCTG+AGG 0.594622 7.3:-21503685 MS.gene41851:CDS
AGTCAGGATCAGGCAGTAGT+GGG 0.598334 7.3:-21502518 MS.gene41851:CDS
ATATGCCGTAACCCAAGGCT+AGG 0.600979 7.3:+21503118 None:intergenic
CAACTTTAATGCCCTCAGGA+GGG 0.602990 7.3:+21503673 None:intergenic
GGTGGCAGAGCAGCACCTGA+TGG 0.604918 7.3:+21502578 None:intergenic
CATCCAAATATTGCCAACAG+TGG 0.613849 7.3:-21503178 MS.gene41851:CDS
CTTGATGAAACCCCTCCTGA+GGG 0.614249 7.3:-21503684 MS.gene41851:CDS
GCGATAGTTTCAACTTCATG+CGG 0.617025 7.3:+21503487 None:intergenic
AGTTGCCTTATCACATTAGG+CGG 0.618457 7.3:+21503726 None:intergenic
GCTGCAACTCCTTATGAGAG+TGG 0.619407 7.3:-21503516 MS.gene41851:CDS
TAAGAATATGCCGTAACCCA+AGG 0.622851 7.3:+21503113 None:intergenic
ACAACTTTAATGCCCTCAGG+AGG 0.632908 7.3:+21503672 None:intergenic
ACACCTTTAGGAGGAGAGTG+TGG 0.641291 7.3:+21503456 None:intergenic
AGAAACATTAGCAGACGACT+CGG 0.654224 7.3:+21502487 None:intergenic
GTGGTTGAGGGCAATGACAG+TGG 0.706158 7.3:+21502557 None:intergenic
GTTGAGGGCAATGACAGTGG+TGG 0.726469 7.3:+21502560 None:intergenic
TGTTGATCAGACAAACACCT+CGG 0.734036 7.3:-21502627 MS.gene41851:CDS
ATGAGCAGCAGAAACTACCG+CGG 0.757246 7.3:+21502457 None:intergenic
GATGTCAGCATTAAGCACCG+AGG 0.759983 7.3:+21502610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAAAATAAATTGGC+AGG + chr7.3:21503682-21503701 None:intergenic 15.0%
! AAATCTGTTGCACATTAAAT+TGG + chr7.3:21502432-21502451 None:intergenic 25.0%
! AATATTTGGATGGAAAATCT+TGG + chr7.3:21503338-21503357 None:intergenic 25.0%
! CCTATAACATTAAATTTGAC+AGG + chr7.3:21503304-21503323 None:intergenic 25.0%
! CCTGTCAAATTTAATGTTAT+AGG - chr7.3:21503301-21503320 MS.gene41851:intron 25.0%
! TATACTCGATTCTTTCAATT+CGG + chr7.3:21503217-21503236 None:intergenic 25.0%
! TATATATATATGTCGATCTG+TGG - chr7.3:21503694-21503713 MS.gene41851:CDS 25.0%
! TGATTCGTTATATCTTGTAA+CGG - chr7.3:21502391-21502410 MS.gene41851:CDS 25.0%
! TTCTATTTAAACACACCTTT+AGG + chr7.3:21503083-21503102 None:intergenic 25.0%
!! AGAAATCAATCAATGTTTTC+AGG + chr7.3:21503186-21503205 None:intergenic 25.0%
!! CTACATTAGTATTTTTCTGT+TGG - chr7.3:21503103-21503122 MS.gene41851:intron 25.0%
!! GTAATTGTTCAATTCCATTT+TGG - chr7.3:21502677-21502696 MS.gene41851:CDS 25.0%
!! TGACTTTTTGAATTAAGTTC+TGG - chr7.3:21503480-21503499 MS.gene41851:CDS 25.0%
ACTACATGACAAATCCAAAA+TGG + chr7.3:21502505-21502524 None:intergenic 30.0%
ACTACTGCTTGAAAATTATG+AGG - chr7.3:21503613-21503632 MS.gene41851:intron 30.0%
ATTACACGACAAATCCAAAA+TGG + chr7.3:21502662-21502681 None:intergenic 30.0%
CATATTCTTATCGTAAGTCT+TGG - chr7.3:21503424-21503443 MS.gene41851:intron 30.0%
GTAGTTGTTCTATTCCATTT+GGG - chr7.3:21502520-21502539 MS.gene41851:CDS 30.0%
TATTTAAACACACCTTTAGG+AGG + chr7.3:21503080-21503099 None:intergenic 30.0%
TGTAGTTGTTCTATTCCATT+TGG - chr7.3:21502519-21502538 MS.gene41851:CDS 30.0%
! ACAATTTTTGCTGACATTGA+AGG - chr7.3:21502897-21502916 MS.gene41851:CDS 30.0%
! AGTTCATTTAAAGCTGATTC+TGG + chr7.3:21503584-21503603 None:intergenic 30.0%
! TGAATTAAGTTCTGGTTGAT+TGG - chr7.3:21503488-21503507 MS.gene41851:CDS 30.0%
! TTTAAAGCTGATTCTGGAAA+CGG + chr7.3:21503578-21503597 None:intergenic 30.0%
!! AGAATCAGCTTTAAATGAAC+TGG - chr7.3:21503583-21503602 MS.gene41851:intron 30.0%
!! ATAGCTCCACTTTTGAATTT+CGG + chr7.3:21503853-21503872 None:intergenic 30.0%
!! ATCAAGATTTTTCAACTCCT+TGG + chr7.3:21502826-21502845 None:intergenic 30.0%
!! GTGGTTGTTTTATTCCATTT+TGG - chr7.3:21502488-21502507 MS.gene41851:CDS 30.0%
!!! ATTCCATTTTGGTTCAGTAA+CGG - chr7.3:21502720-21502739 MS.gene41851:intron 30.0%
!!! TTGTATGGTGCTTTTGTTTT+AGG - chr7.3:21502758-21502777 MS.gene41851:intron 30.0%
AAAAAGGAAGTTGCTTACCA+GGG + chr7.3:21502923-21502942 None:intergenic 35.0%
ACTACACGACAAATCCAAAA+TGG + chr7.3:21502694-21502713 None:intergenic 35.0%
ACTACACGACAAATCGAAAA+TGG + chr7.3:21502599-21502618 None:intergenic 35.0%
ATTCAGAGCAGTAGTTGATT+CGG + chr7.3:21503878-21503897 None:intergenic 35.0%
CAAGATATAACGAATCAAGC+AGG + chr7.3:21502388-21502407 None:intergenic 35.0%
GTAGTTGTTCGATTCCATTT+GGG - chr7.3:21502457-21502476 MS.gene41851:CDS 35.0%
TAAAAAGGAAGTTGCTTACC+AGG + chr7.3:21502924-21502943 None:intergenic 35.0%
TGTAGTTGTTCGATTCCATT+TGG - chr7.3:21502456-21502475 MS.gene41851:CDS 35.0%
! ACCTAACAACCTGTTGATTA+TGG + chr7.3:21503541-21503560 None:intergenic 35.0%
! CCTAACAACCTGTTGATTAT+GGG + chr7.3:21503540-21503559 None:intergenic 35.0%
! GTAGTTGTTCGATTCCATTT+TGG - chr7.3:21502457-21502476 MS.gene41851:CDS 35.0%
! TGTGGAAGGGTACATTAAAA+AGG + chr7.3:21502939-21502958 None:intergenic 35.0%
!! CATTGATTCCCATAATCAAC+AGG - chr7.3:21503529-21503548 MS.gene41851:intron 35.0%
AGAAACATTAGCAGACGACT+CGG + chr7.3:21504040-21504059 None:intergenic 40.0%
AGCATTCTGACATGGTTGTA+TGG - chr7.3:21502743-21502762 MS.gene41851:intron 40.0%
AGCTCGTTACATAATGTGGA+AGG + chr7.3:21502953-21502972 None:intergenic 40.0%
AGTTGCCTTATCACATTAGG+CGG + chr7.3:21502801-21502820 None:intergenic 40.0%
ATCTTCCGCCTAATGTGATA+AGG - chr7.3:21502793-21502812 MS.gene41851:intron 40.0%
CACTGTTGGCAATATTTGGA+TGG + chr7.3:21503348-21503367 None:intergenic 40.0%
CATCCAAATATTGCCAACAG+TGG - chr7.3:21503346-21503365 MS.gene41851:intron 40.0%
CCAAAGCCGAAATTCAAAAG+TGG - chr7.3:21503844-21503863 MS.gene41851:intron 40.0%
CCCATAATCAACAGGTTGTT+AGG - chr7.3:21503537-21503556 MS.gene41851:intron 40.0%
CTTGAGCTCGTTACATAATG+TGG + chr7.3:21502957-21502976 None:intergenic 40.0%
GCAAGTTGCCTTATCACATT+AGG + chr7.3:21502804-21502823 None:intergenic 40.0%
GCGATAGTTTCAACTTCATG+CGG + chr7.3:21503040-21503059 None:intergenic 40.0%
GCTCGTTACATAATGTGGAA+GGG + chr7.3:21502952-21502971 None:intergenic 40.0%
GTCTTGCGTAAAAACTAGCA+TGG + chr7.3:21503751-21503770 None:intergenic 40.0%
GTGGTTGTTCGATTCCATTT+GGG - chr7.3:21502551-21502570 MS.gene41851:CDS 40.0%
TAAGAATATGCCGTAACCCA+AGG + chr7.3:21503414-21503433 None:intergenic 40.0%
TCTCCACTGTTGGCAATATT+TGG + chr7.3:21503352-21503371 None:intergenic 40.0%
TGTGGTTGTTCGATTCCATT+TGG - chr7.3:21502550-21502569 MS.gene41851:CDS 40.0%
TGTTGATCAGACAAACACCT+CGG - chr7.3:21503897-21503916 MS.gene41851:intron 40.0%
! ATTAGGCGGAAGATTTTCGT+TGG + chr7.3:21502787-21502806 None:intergenic 40.0%
! GTTTTTACGCAAGACATTCC+CGG - chr7.3:21503756-21503775 MS.gene41851:intron 40.0%
!! CCACTTTTGAATTTCGGCTT+TGG + chr7.3:21503847-21503866 None:intergenic 40.0%
!! TCAGCTTTAAATGAACTGGC+TGG - chr7.3:21503587-21503606 MS.gene41851:intron 40.0%
!!! ATTTCGGCTTTGGTTTTGCA+TGG + chr7.3:21503837-21503856 None:intergenic 40.0%
!!! CTTTGGTTTTGCATGGATTC+CGG + chr7.3:21503830-21503849 None:intergenic 40.0%
AACCACACGACAAACCCAAA+TGG + chr7.3:21502474-21502493 None:intergenic 45.0%
AACTACACGACAAGCCCAAA+TGG + chr7.3:21502631-21502650 None:intergenic 45.0%
AACTGCACGACAAACCCAAA+TGG + chr7.3:21502568-21502587 None:intergenic 45.0%
AACTTTAATGCCCTCAGGAG+GGG + chr7.3:21502853-21502872 None:intergenic 45.0%
AAGAGGAACTAGTCAGGATC+AGG - chr7.3:21503996-21504015 MS.gene41851:intron 45.0%
AAGGATTGGAATCCTAGCCT+TGG - chr7.3:21503394-21503413 MS.gene41851:intron 45.0%
ACAACTTTAATGCCCTCAGG+AGG + chr7.3:21502855-21502874 None:intergenic 45.0%
ACGACAACTTTAATGCCCTC+AGG + chr7.3:21502858-21502877 None:intergenic 45.0%
CAACTTTAATGCCCTCAGGA+GGG + chr7.3:21502854-21502873 None:intergenic 45.0%
CATTGGAACTGCTAAAGCTC+AGG - chr7.3:21504107-21504126 MS.gene41851:intron 45.0%
CCTCAATTACAAGCAGATGC+CGG + chr7.3:21503778-21503797 None:intergenic 45.0%
CGGAAAACTCCACTCTCATA+AGG + chr7.3:21503020-21503039 None:intergenic 45.0%
CGGCATCTGCTTGTAATTGA+GGG - chr7.3:21503776-21503795 MS.gene41851:intron 45.0%
CTCAATTACAAGCAGATGCC+GGG + chr7.3:21503777-21503796 None:intergenic 45.0%
GACACAAATCTCTCCACTGT+TGG + chr7.3:21503362-21503381 None:intergenic 45.0%
GACATCAAAACCATGCCATC+AGG - chr7.3:21503931-21503950 MS.gene41851:intron 45.0%
GCTCCGTTACTGAACCAAAA+TGG + chr7.3:21502726-21502745 None:intergenic 45.0%
GGCATCTGCTTGTAATTGAG+GGG - chr7.3:21503777-21503796 MS.gene41851:intron 45.0%
TAATGTTTCTTCTGCTGCCG+CGG - chr7.3:21504050-21504069 MS.gene41851:intron 45.0%
TCAACGCGCTCAAAAAGGAT+TGG - chr7.3:21503380-21503399 MS.gene41851:intron 45.0%
TGCTCATGCACCACAAAAGA+GGG - chr7.3:21504083-21504102 MS.gene41851:intron 45.0%
TGTGATAAGGCAACTTGCCA+AGG - chr7.3:21502806-21502825 MS.gene41851:intron 45.0%
TTGTGTCAACGCGCTCAAAA+AGG - chr7.3:21503375-21503394 MS.gene41851:intron 45.0%
TTTCCACACTCTCCTCCTAA+AGG - chr7.3:21503065-21503084 MS.gene41851:intron 45.0%
! AGGATTGGAATCCTAGCCTT+GGG - chr7.3:21503395-21503414 MS.gene41851:intron 45.0%
! AGTAACGGAGCATTCTGACA+TGG - chr7.3:21502735-21502754 MS.gene41851:intron 45.0%
! GTTCCAATGTCCCTCTTTTG+TGG + chr7.3:21504096-21504115 None:intergenic 45.0%
! TTCCATTTGGGTTTGTCGTG+TGG - chr7.3:21502469-21502488 MS.gene41851:CDS 45.0%
!! CATATATATATAAAATAAAT+TGG + chr7.3:21503686-21503705 None:intergenic 5.0%
AACCACACGACAAGCCCAAA+TGG + chr7.3:21502537-21502556 None:intergenic 50.0%
ACTAGTTCCTCTTGCTCCAG+TGG + chr7.3:21503989-21504008 None:intergenic 50.0%
AGTCAGGATCAGGCAGTAGT+GGG - chr7.3:21504006-21504025 MS.gene41851:intron 50.0%
ATATGCCGTAACCCAAGGCT+AGG + chr7.3:21503409-21503428 None:intergenic 50.0%
ATGAGCAGCAGAAACTACCG+CGG + chr7.3:21504070-21504089 None:intergenic 50.0%
CCGGCATCTGCTTGTAATTG+AGG - chr7.3:21503775-21503794 MS.gene41851:intron 50.0%
CTGCTCATGCACCACAAAAG+AGG - chr7.3:21504082-21504101 MS.gene41851:intron 50.0%
CTTGATGAAACCCCTCCTGA+GGG - chr7.3:21502840-21502859 MS.gene41851:intron 50.0%
GCACCACAAAAGAGGGACAT+TGG - chr7.3:21504090-21504109 MS.gene41851:intron 50.0%
GCTGCAACTCCTTATGAGAG+TGG - chr7.3:21503008-21503027 MS.gene41851:intron 50.0%
TAGTCAGGATCAGGCAGTAG+TGG - chr7.3:21504005-21504024 MS.gene41851:intron 50.0%
TCTTGATGAAACCCCTCCTG+AGG - chr7.3:21502839-21502858 MS.gene41851:intron 50.0%
TGCCAGGTGAGTTAAGCCAA+TGG - chr7.3:21503649-21503668 MS.gene41851:CDS 50.0%
TGGAGCAAGAGGAACTAGTC+AGG - chr7.3:21503990-21504009 MS.gene41851:intron 50.0%
TTCCATTTGGGCTTGTCGTG+TGG - chr7.3:21502532-21502551 MS.gene41851:CDS 50.0%
TTTGCTGACATTGAAGGCCC+TGG - chr7.3:21502903-21502922 MS.gene41851:CDS 50.0%
! ACACCTTTAGGAGGAGAGTG+TGG + chr7.3:21503071-21503090 None:intergenic 50.0%
! AGGAGTATGCTAGACATGCC+AGG - chr7.3:21503633-21503652 MS.gene41851:CDS 50.0%
! AGGCGGAAGATTTTCGTTGG+TGG + chr7.3:21502784-21502803 None:intergenic 50.0%
! GATGTCAGCATTAAGCACCG+AGG + chr7.3:21503917-21503936 None:intergenic 50.0%
! GCGACATGCAGGCTTTTAAC+CGG - chr7.3:21503808-21503827 MS.gene41851:intron 50.0%
! GGGCTTTAATTGCGACATGC+AGG - chr7.3:21503797-21503816 MS.gene41851:intron 50.0%
!! CACCATTGGCTTAACTCACC+TGG + chr7.3:21503654-21503673 None:intergenic 50.0%
!! GGAATCCTAGCCTTGGGTTA+CGG - chr7.3:21503401-21503420 MS.gene41851:intron 50.0%
ATTGGCAGGAGCAGCACCAT+TGG + chr7.3:21503668-21503687 None:intergenic 55.0%
CCTCTTGCTCCAGTGGTTGA+GGG + chr7.3:21503982-21504001 None:intergenic 55.0%
CTGTCATTGCCCTCAACCAC+TGG - chr7.3:21503970-21503989 MS.gene41851:intron 55.0%
GTGGTTGAGGGCAATGACAG+TGG + chr7.3:21503970-21503989 None:intergenic 55.0%
GTTGAGGGCAATGACAGTGG+TGG + chr7.3:21503967-21503986 None:intergenic 55.0%
TCCTCTTGCTCCAGTGGTTG+AGG + chr7.3:21503983-21504002 None:intergenic 55.0%
CAGAGCAGCACCTGATGGCA+TGG + chr7.3:21503944-21503963 None:intergenic 60.0%
CCCTCAACCACTGGAGCAAG+AGG - chr7.3:21503979-21503998 MS.gene41851:intron 60.0%
GGTGGCAGAGCAGCACCTGA+TGG + chr7.3:21503949-21503968 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 21502367 21504179 21502367 ID=MS.gene41851
chr7.3 mRNA 21502367 21504179 21502367 ID=MS.gene41851.t1;Parent=MS.gene41851
chr7.3 exon 21504177 21504179 21504177 ID=MS.gene41851.t1.exon1;Parent=MS.gene41851.t1
chr7.3 CDS 21504177 21504179 21504177 ID=cds.MS.gene41851.t1;Parent=MS.gene41851.t1
chr7.3 exon 21503622 21503766 21503622 ID=MS.gene41851.t1.exon2;Parent=MS.gene41851.t1
chr7.3 CDS 21503622 21503766 21503622 ID=cds.MS.gene41851.t1;Parent=MS.gene41851.t1
chr7.3 exon 21503460 21503537 21503460 ID=MS.gene41851.t1.exon3;Parent=MS.gene41851.t1
chr7.3 CDS 21503460 21503537 21503460 ID=cds.MS.gene41851.t1;Parent=MS.gene41851.t1
chr7.3 exon 21503111 21503223 21503111 ID=MS.gene41851.t1.exon4;Parent=MS.gene41851.t1
chr7.3 CDS 21503111 21503223 21503111 ID=cds.MS.gene41851.t1;Parent=MS.gene41851.t1
chr7.3 exon 21502892 21502995 21502892 ID=MS.gene41851.t1.exon5;Parent=MS.gene41851.t1
chr7.3 CDS 21502892 21502995 21502892 ID=cds.MS.gene41851.t1;Parent=MS.gene41851.t1
chr7.3 exon 21502367 21502727 21502367 ID=MS.gene41851.t1.exon6;Parent=MS.gene41851.t1
chr7.3 CDS 21502367 21502727 21502367 ID=cds.MS.gene41851.t1;Parent=MS.gene41851.t1
Gene Sequence

>MS.gene41851

ATGGTAAGTAGTTATTTACCTGCTTGATTCGTTATATCTTGTAACGGATCATTTGTCGTTTGCCAATTTAATGTGCAACAGATTTGTCGTGTAGTTGTTCGATTCCATTTGGGTTTGTCGTGTGGTTGTTTTATTCCATTTTGGATTTGTCATGTAGTTGTTCTATTCCATTTGGGCTTGTCGTGTGGTTGTTCGATTCCATTTGGGTTTGTCGTGCAGTTGTTTGATTCCATTTTCGATTTGTCGTGTAGTTGTTCTATTCCATTTGGGCTTGTCGTGTAGTTGTTCGATTCCATTTTGGATTTGTCGTGTAATTGTTCAATTCCATTTTGGATTTGTCGTGTAGTTGTTCGATTCCATTTTGGTTCAGTAACGGAGCATTCTGACATGGTTGTATGGTGCTTTTGTTTTAGGCCACCAACGAAAATCTTCCGCCTAATGTGATAAGGCAACTTGCCAAGGAGTTGAAAAATCTTGATGAAACCCCTCCTGAGGGCATTAAAGTTGTCGTGAATGATGATGATTTTTCAACAATTTTTGCTGACATTGAAGGCCCTGGTAAGCAACTTCCTTTTTAATGTACCCTTCCACATTATGTAACGAGCTCAAGCTAAAATTTTGTTGTGTTATGTGTTTTTGCAGCTGCAACTCCTTATGAGAGTGGAGTTTTCCGCATGAAGTTGAAACTATCGCATGATTTTCCACACTCTCCTCCTAAAGGTGTGTTTAAATAGAACTACATTAGTATTTTTCTGTTGGAATTTTGAATTGTTTTTGTTGAACTGTTTCATGTGACATAGTTCATTATTTATTTTTCCTGAAAACATTGATTGATTTCTTTATTTTTCCGAATTGAAAGAATCGAGTATATTTGTGTTTTGCATCAAATTTAATGTTTTGCGTCAAATTGAAAGAATGTTAACTAACTAGTGAACCTGTCAAATTTAATGTTATAGGATATTTCTTGACCAAGATTTTCCATCCAAATATTGCCAACAGTGGAGAGATTTGTGTCAACGCGCTCAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATATTCTTATCGTAAGTCTTGGCTGTCTTACATGAGAGTTTTTATTTGATATTCTTGACTTTTTGAATTAAGTTCTGGTTGATTGGACTTTGTATTCATCAAAACATTGATTCCCATAATCAACAGGTTGTTAGGTGTCTATTGATTGAACCGTTTCCAGAATCAGCTTTAAATGAACTGGCTGGTAAACTACTGCTTGAAAATTATGAGGAGTATGCTAGACATGCCAGGTGAGTTAAGCCAATGGTGCTGCTCCTGCCAATTTATTTTATATATATATGTCGATCTGTGGTGTTGATAAATTTTCTATAGTTAAACTAGTTCCATGCTAGTTTTTACGCAAGACATTCCCGGCATCTGCTTGTAATTGAGGGGCTTTAATTGCGACATGCAGGCTTTTAACCGGAATCCATGCAAAACCAAAGCCGAAATTCAAAAGTGGAGCTATAACCGAATCAACTACTGCTCTGAATGTTGATCAGACAAACACCTCGGTGCTTAATGCTGACATCAAAACCATGCCATCAGGTGCTGCTCTGCCACCACTGTCATTGCCCTCAACCACTGGAGCAAGAGGAACTAGTCAGGATCAGGCAGTAGTGGGCGTTCTGACCGAGTCGTCTGCTAATGTTTCTTCTGCTGCCGCGGTAGTTTCTGCTGCTCATGCACCACAAAAGAGGGACATTGGAACTGCTAAAGCTCAGGCAGACAAGAAGAAGCTAGATGCTAGAAAGAAAAGTTTGAAAAGATTGTGA
Protein sequence

>MS.gene41851.t1

MATNENLPPNVIRQLAKELKNLDETPPEGIKVVVNDDDFSTIFADIEGPAATPYESGVFRMKLKLSHDFPHSPPKGYFLTKIFHPNIANSGEICVNALKKDWNPSLGLRHILIVVRCLLIEPFPESALNELAGKLLLENYEEYARHARLLTGIHAKPKPKFKSGAITESTTALNVDQTNTSVLNADIKTMPSGAALPPLSLPSTTGARGTSQDQAVVGVLTESSANVSSAAAVVSAAHAPQKRDIGTAKAQADKKKLDARKKSLKRL