AlfalfaGEDB | MS.gene42018

M. sativa cultivar XinJiangDaYe / MS.gene42018

KEGG: K00430
GO: GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0046906 GO:0048037 GO:0050896 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00141.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	RHN51306.1	97	165	5	0	25	189	220	384	1.70E-85	325.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	Q96520	55.8	163	70	2	26	186	196	358	6.0e-44	178.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	A0A072UAE2	97.0	165	5	0	25	189	188	352	1.2e-85	325.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049265	MS.gene42018	0.812355	4.42E-51	-1.69E-46
MS.gene050809	MS.gene42018	0.860965	1.43E-63	-1.69E-46
MS.gene050971	MS.gene42018	-0.822909	1.84E-53	-1.69E-46
MS.gene051907	MS.gene42018	0.804032	2.62E-49	-1.69E-46
MS.gene05233	MS.gene42018	0.804053	2.60E-49	-1.69E-46
MS.gene052805	MS.gene42018	0.806841	6.76E-50	-1.69E-46
MS.gene054290	MS.gene42018	0.913517	5.62E-84	-1.69E-46
MS.gene057544	MS.gene42018	0.806431	8.26E-50	-1.69E-46
MS.gene058158	MS.gene42018	0.830471	2.88E-55	-1.69E-46
MS.gene058928	MS.gene42018	-0.808857	2.52E-50	-1.69E-46

Showing 1 to 10 of 12 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	MTR_6g043240	96.970	165	5	0	25	189	188	352	1.08e-115	333
MS.gene42018.t1	MTR_6g043280	76.224	143	34	0	26	168	190	332	4.72e-73	223
MS.gene42018.t1	MTR_6g043460	58.824	153	63	0	22	174	182	334	3.28e-58	186
MS.gene42018.t1	MTR_5g058120	55.714	140	58	1	25	164	20	155	1.21e-45	151
MS.gene42018.t1	MTR_2g029815	48.588	177	73	6	22	183	175	348	1.23e-42	146
MS.gene42018.t1	MTR_2g029820	48.352	182	77	6	18	183	171	351	1.67e-42	145
MS.gene42018.t1	MTR_2g029830	44.693	179	84	5	22	186	106	283	4.13e-41	140
MS.gene42018.t1	MTR_2g029830	44.693	179	84	5	22	186	174	351	2.70e-40	140
MS.gene42018.t1	MTR_2g029730	42.553	188	99	3	5	183	154	341	7.69e-40	138
MS.gene42018.t1	MTR_2g029560	44.509	173	87	4	6	169	154	326	4.26e-39	136

Showing 1 to 10 of 115 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	AT1G71695	55.828	163	70	2	26	186	196	358	1.67e-58	187
MS.gene42018.t1	AT5G06730	47.134	157	74	3	22	169	179	335	8.66e-39	136
MS.gene42018.t1	AT5G06720	45.098	153	75	3	26	169	182	334	3.76e-35	126
MS.gene42018.t1	AT5G19880	42.767	159	81	3	20	168	171	329	1.40e-34	124
MS.gene42018.t1	AT5G14130	42.484	153	82	1	22	168	178	330	1.62e-34	124
MS.gene42018.t1	AT5G14130	42.484	153	82	1	22	168	219	371	2.08e-34	125
MS.gene42018.t1	AT2G18980	42.857	154	81	2	22	168	170	323	3.98e-33	120
MS.gene42018.t1	AT4G08770	42.331	163	82	5	33	185	182	342	9.57e-33	120
MS.gene42018.t1	AT4G08780	41.358	162	83	5	34	185	183	342	1.65e-32	119
MS.gene42018.t1	AT4G30170	42.208	154	82	3	22	168	172	325	1.95e-32	119

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

Find 29 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTAGACATTAGGACCC+CGG	0.678367	6.4:-16885126	MS.gene42018:CDS
AAATGTAATGTGGTAAATGG+TGG	0.658711	6.4:-16884894	MS.gene42018:CDS
AACATTGATTCGAGGACAAA+GGG	0.472059	6.4:-16885032	MS.gene42018:CDS
AACTATGGTGGAAGAGGGAA+TGG	0.501394	6.4:-16884853	MS.gene42018:CDS
AAGATTTGAACATTGATTCG+AGG	0.487714	6.4:-16885040	MS.gene42018:CDS
AATTCGTGCTAAATGTAATG+TGG	0.676115	6.4:-16884904	MS.gene42018:CDS
ACACTGCAAACCTAGACATT+AGG	0.442026	6.4:-16885133	MS.gene42018:CDS
ACAGATGTTGTTGCATTATC+AGG	0.305416	6.4:-16885281	MS.gene42018:CDS
ACATTTGGTCGTGCACATTG+TGG	0.592460	6.4:-16885251	MS.gene42018:CDS
ACTTGCCCTAATGCAAATTC+AGG	0.479618	6.4:-16885158	MS.gene42018:CDS

Showing 1 to 10 of 29 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTAATGTGGTAAATGG+TGG	-	chr6.4:16885319-16885338	MS.gene42018:CDS	30.0%
AATTCGTGCTAAATGTAATG+TGG	-	chr6.4:16885309-16885328	MS.gene42018:CDS	30.0%
CTTGTTTGTTCATCAAATCA+AGG	+	chr6.4:16885135-16885154	None:intergenic	30.0%
GCTAAATGTAATGTGGTAAA+TGG	-	chr6.4:16885316-16885335	MS.gene42018:CDS	30.0%
TCGAATCAATGTTCAAATCT+TGG	+	chr6.4:16885174-16885193	None:intergenic	30.0%
ACAGATGTTGTTGCATTATC+AGG	-	chr6.4:16884932-16884951	MS.gene42018:CDS	35.0%
TGTTGCCTGAATTTGCATTA+GGG	+	chr6.4:16885063-16885082	None:intergenic	35.0%
ACACTGCAAACCTAGACATT+AGG	-	chr6.4:16885080-16885099	MS.gene42018:CDS	40.0%
ACTTGCCCTAATGCAAATTC+AGG	-	chr6.4:16885055-16885074	MS.gene42018:CDS	40.0%
GTGTTGCCTGAATTTGCATT+AGG	+	chr6.4:16885064-16885083	None:intergenic	40.0%

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	16884833	16885402	16884833	ID=MS.gene42018
chr6.4	mRNA	16884833	16885402	16884833	ID=MS.gene42018.t1;Parent=MS.gene42018
chr6.4	exon	16884833	16885402	16884833	ID=MS.gene42018.t1.exon1;Parent=MS.gene42018.t1
chr6.4	CDS	16884833	16885402	16884833	ID=cds.MS.gene42018.t1;Parent=MS.gene42018.t1

Gene Sequence

>MS.gene42018

ATGGCAAAACTTTTAGCATTAAAGAAACAAGCAATCTTCCACAACCATTCAACAAAACAGATGTTACACTCAGTTTTTGCAGCCCAAAACTTTGATGTCACAGATGTTGTTGCATTATCAGGTGCACACACATTTGGTCGTGCACATTGTGGAACATTCTTCAATAGACTCTCTCCAGCAGACCCTACAATGGACAAAACCCTAGCTCAAAACCTCAAAAACACTTGCCCTAATGCAAATTCAGGCAACACTGCAAACCTAGACATTAGGACCCCGGCAACATTCGACAACAAATACTACCTTGATTTGATGAACAAACAAGGTTTGTTCACATCTGACCAAGATTTGAACATTGATTCGAGGACAAAGGGTTTGGTTAATGATTTTGCTGTTAATCAGAATTTGTTCTTTGAGAAGTTTATTAATGCTTTTATTAAGGTGAGTCAGTTGAATGTTTTGGTTGGAAATCAAGGTGAAATTCGTGCTAAATGTAATGTGGTAAATGGTGGTAAGAAATCTGTTTTGTCAACTATGGTGGAAGAGGGAATGGACTTGATTGAGCAATTTTAA

Protein sequence

>MS.gene42018.t1

MAKLLALKKQAIFHNHSTKQMLHSVFAAQNFDVTDVVALSGAHTFGRAHCGTFFNRLSPADPTMDKTLAQNLKNTCPNANSGNTANLDIRTPATFDNKYYLDLMNKQGLFTSDQDLNIDSRTKGLVNDFAVNQNLFFEKFINAFIKVSQLNVLVGNQGEIRAKCNVVNGGKKSVLSTMVEEGMDLIEQF