AlfalfaGEDB | MS.gene42018

M. sativa cultivar XinJiangDaYe / MS.gene42018

KEGG: K00430
GO: GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0046906 GO:0048037 GO:0050896 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00141.26

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	RHN51306.1	97	165	5	0	25	189	220	384	1.70E-85	325.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	Q96520	55.8	163	70	2	26	186	196	358	6.0e-44	178.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	A0A072UAE2	97.0	165	5	0	25	189	188	352	1.2e-85	325.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049265	MS.gene42018	0.812355	4.42E-51	-1.69E-46
MS.gene050809	MS.gene42018	0.860965	1.43E-63	-1.69E-46
MS.gene050971	MS.gene42018	-0.822909	1.84E-53	-1.69E-46
MS.gene051907	MS.gene42018	0.804032	2.62E-49	-1.69E-46
MS.gene05233	MS.gene42018	0.804053	2.60E-49	-1.69E-46
MS.gene052805	MS.gene42018	0.806841	6.76E-50	-1.69E-46
MS.gene054290	MS.gene42018	0.913517	5.62E-84	-1.69E-46
MS.gene057544	MS.gene42018	0.806431	8.26E-50	-1.69E-46
MS.gene058158	MS.gene42018	0.830471	2.88E-55	-1.69E-46
MS.gene058928	MS.gene42018	-0.808857	2.52E-50	-1.69E-46
MS.gene059402	MS.gene42018	0.824106	9.66E-54	-1.69E-46
MS.gene060818	MS.gene42018	-0.811128	8.18E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	MTR_6g043240	96.970	165	5	0	25	189	188	352	1.08e-115	333
MS.gene42018.t1	MTR_6g043280	76.224	143	34	0	26	168	190	332	4.72e-73	223
MS.gene42018.t1	MTR_6g043460	58.824	153	63	0	22	174	182	334	3.28e-58	186
MS.gene42018.t1	MTR_5g058120	55.714	140	58	1	25	164	20	155	1.21e-45	151
MS.gene42018.t1	MTR_2g029815	48.588	177	73	6	22	183	175	348	1.23e-42	146
MS.gene42018.t1	MTR_2g029820	48.352	182	77	6	18	183	171	351	1.67e-42	145
MS.gene42018.t1	MTR_2g029830	44.693	179	84	5	22	186	106	283	4.13e-41	140
MS.gene42018.t1	MTR_2g029830	44.693	179	84	5	22	186	174	351	2.70e-40	140
MS.gene42018.t1	MTR_2g029730	42.553	188	99	3	5	183	154	341	7.69e-40	138
MS.gene42018.t1	MTR_2g029560	44.509	173	87	4	6	169	154	326	4.26e-39	136
MS.gene42018.t1	MTR_1g098320	62.887	97	36	0	89	185	45	141	5.57e-39	130
MS.gene42018.t1	MTR_2g029740	47.205	161	74	4	22	173	175	333	7.79e-39	136
MS.gene42018.t1	MTR_2g029850	45.977	174	85	3	22	186	175	348	1.37e-38	135
MS.gene42018.t1	MTR_2g029860	45.562	169	83	3	22	181	175	343	1.79e-38	135
MS.gene42018.t1	MTR_2g029750	43.889	180	87	5	17	184	170	347	3.09e-38	134
MS.gene42018.t1	MTR_2g028980	47.826	161	73	4	22	173	175	333	5.77e-38	134
MS.gene42018.t1	MTR_2g029800	46.154	156	75	3	22	168	175	330	2.06e-36	130
MS.gene42018.t1	MTR_2g029910	45.860	157	75	3	22	168	176	332	9.95e-36	128
MS.gene42018.t1	MTR_7g093370	44.444	153	76	3	26	169	220	372	1.07e-34	125
MS.gene42018.t1	MTR_4g095450	44.595	148	80	2	22	167	176	323	1.64e-34	124
MS.gene42018.t1	MTR_1g066380	41.615	161	88	3	14	169	97	256	1.49e-33	120
MS.gene42018.t1	MTR_1g054205	45.806	155	75	3	24	169	173	327	2.60e-33	121
MS.gene42018.t1	MTR_1g066380	41.615	161	88	3	14	169	165	324	9.19e-33	119
MS.gene42018.t1	MTR_1g066640	41.615	161	88	3	14	169	165	324	4.52e-32	118
MS.gene42018.t1	MTR_7g029030	42.667	150	83	2	22	168	171	320	6.47e-32	117
MS.gene42018.t1	MTR_4g087965	41.463	164	87	3	12	166	181	344	2.13e-31	116
MS.gene42018.t1	MTR_2g029880	41.401	157	74	5	20	168	42	188	5.79e-31	112
MS.gene42018.t1	MTR_3g092990	41.290	155	83	2	22	168	161	315	5.98e-31	114
MS.gene42018.t1	MTR_3g092990	41.290	155	83	2	22	168	172	326	8.64e-31	114
MS.gene42018.t1	MTR_4g127670	39.766	171	96	2	5	168	153	323	8.66e-31	114
MS.gene42018.t1	MTR_1g090760	39.869	153	84	3	24	168	178	330	1.18e-30	114
MS.gene42018.t1	MTR_5g017860	43.709	151	77	2	26	168	176	326	1.24e-30	114
MS.gene42018.t1	MTR_7g086820	43.046	151	81	2	22	168	163	312	1.44e-30	114
MS.gene42018.t1	MTR_4g125940	42.675	157	77	4	24	168	119	274	2.14e-30	112
MS.gene42018.t1	MTR_1g066710	40.994	161	89	3	14	169	165	324	2.88e-30	113
MS.gene42018.t1	MTR_4g125940	42.675	157	77	4	24	168	174	329	6.90e-30	112
MS.gene42018.t1	MTR_7g107520	39.394	165	89	4	11	168	160	320	1.40e-29	111
MS.gene42018.t1	MTR_3g466200	43.333	150	81	2	22	168	172	320	1.48e-29	111
MS.gene42018.t1	MTR_0155s0040	41.667	144	80	2	26	168	175	315	1.70e-29	110
MS.gene42018.t1	MTR_1g066680	36.145	166	101	2	9	169	158	323	3.78e-29	110
MS.gene42018.t1	MTR_5g016010	39.869	153	85	2	22	167	176	328	4.39e-29	110
MS.gene42018.t1	MTR_4g122640	39.623	159	90	4	16	168	178	336	7.46e-29	109
MS.gene42018.t1	MTR_5g017850	41.060	151	81	2	26	168	176	326	7.72e-29	109
MS.gene42018.t1	MTR_4g029200	43.243	148	82	2	22	168	192	338	1.08e-28	109
MS.gene42018.t1	MTR_1g077000	40.541	148	84	2	22	168	183	327	1.37e-28	108
MS.gene42018.t1	MTR_2g040000	38.506	174	95	3	7	168	158	331	1.50e-28	108
MS.gene42018.t1	MTR_1g009750	38.312	154	88	2	22	168	158	311	1.68e-28	108
MS.gene42018.t1	MTR_1g009750	38.312	154	88	2	22	168	175	328	2.34e-28	108
MS.gene42018.t1	MTR_8g062780	38.994	159	89	2	18	168	166	324	2.90e-28	108
MS.gene42018.t1	MTR_1g086320	39.130	161	88	3	17	168	174	333	4.41e-28	107
MS.gene42018.t1	MTR_1g101830	39.490	157	83	5	20	168	170	322	5.85e-28	107
MS.gene42018.t1	MTR_5g022870	38.961	154	83	4	22	168	167	316	9.20e-28	106
MS.gene42018.t1	MTR_7g086870	38.816	152	92	1	17	168	161	311	1.12e-27	106
MS.gene42018.t1	MTR_4g132110	36.875	160	95	3	14	168	170	328	1.66e-27	106
MS.gene42018.t1	MTR_4g132110	36.875	160	95	3	14	168	175	333	1.75e-27	106
MS.gene42018.t1	MTR_4g029190	43.709	151	79	3	22	168	192	340	2.69e-27	105
MS.gene42018.t1	MTR_5g014100	35.758	165	93	4	17	168	167	331	4.08e-27	105
MS.gene42018.t1	MTR_5g074970	40.385	156	88	2	17	168	172	326	4.87e-27	104
MS.gene42018.t1	MTR_8g075100	37.662	154	85	4	22	168	170	319	6.34e-27	104
MS.gene42018.t1	MTR_3g094650	40.127	157	90	3	11	164	163	318	1.45e-26	103
MS.gene42018.t1	MTR_8g076820	37.267	161	89	4	18	168	172	330	2.41e-26	102
MS.gene42018.t1	MTR_1g038680	38.411	151	85	2	26	168	182	332	3.54e-26	102
MS.gene42018.t1	MTR_5g021060	36.025	161	91	4	18	168	172	330	3.99e-26	102
MS.gene42018.t1	MTR_3g094670	38.217	157	93	3	11	164	163	318	8.09e-26	101
MS.gene42018.t1	MTR_4g132490	37.255	153	86	3	24	168	177	327	1.11e-25	101
MS.gene42018.t1	MTR_4g029170	38.194	144	87	2	26	168	179	321	1.35e-25	100
MS.gene42018.t1	MTR_5g083860	37.419	155	93	3	17	168	172	325	1.64e-25	100
MS.gene42018.t1	MTR_4g031140	35.802	162	94	4	22	176	174	332	2.04e-25	100
MS.gene42018.t1	MTR_6g027440	39.456	147	85	1	26	168	168	314	3.71e-25	99.8
MS.gene42018.t1	MTR_7g072510	37.162	148	91	2	22	168	166	312	5.21e-25	99.0
MS.gene42018.t1	MTR_2g084080	37.838	148	90	2	22	168	171	317	1.03e-24	98.6
MS.gene42018.t1	MTR_3g467600	40.667	150	85	3	22	168	176	324	1.07e-24	98.6
MS.gene42018.t1	MTR_3g072190	37.838	148	90	2	22	168	105	251	1.21e-24	97.1
MS.gene42018.t1	MTR_2g088770	39.881	168	87	6	11	168	162	325	1.90e-24	97.8
MS.gene42018.t1	MTR_3g466180	36.486	148	92	2	22	168	177	323	2.76e-24	97.4
MS.gene42018.t1	MTR_1g086490	37.500	168	88	3	17	168	174	340	2.99e-24	97.4
MS.gene42018.t1	MTR_3g072190	37.838	148	90	2	22	168	172	318	3.36e-24	97.1
MS.gene42018.t1	MTR_4g030890	37.013	154	87	4	22	168	246	396	3.79e-24	98.2
MS.gene42018.t1	MTR_0286s0010	36.306	157	94	2	18	168	178	334	5.26e-24	96.7
MS.gene42018.t1	MTR_6g008075	36.306	157	94	2	18	168	178	334	5.26e-24	96.7
MS.gene42018.t1	MTR_4g133800	33.526	173	104	4	5	168	163	333	6.48e-24	96.7
MS.gene42018.t1	MTR_3g105790	39.416	137	74	2	41	168	110	246	8.61e-24	94.7
MS.gene42018.t1	MTR_3g072210	39.130	161	91	5	11	168	82	238	9.61e-24	94.4
MS.gene42018.t1	MTR_2g437770	36.646	161	92	4	16	169	185	342	1.38e-23	95.9
MS.gene42018.t1	MTR_3g105790	39.416	137	74	2	41	168	186	322	2.82e-23	94.7
MS.gene42018.t1	MTR_5g074860	40.268	149	84	4	22	167	178	324	3.59e-23	94.4
MS.gene42018.t1	MTR_7g072480	37.838	148	90	2	22	168	170	316	4.07e-23	94.0
MS.gene42018.t1	MTR_2g084110	37.838	148	90	2	22	168	171	317	6.56e-23	93.6
MS.gene42018.t1	MTR_2g084090	36.913	149	91	2	22	168	171	318	6.79e-23	93.6
MS.gene42018.t1	MTR_1g022970	38.272	162	91	3	16	168	186	347	7.24e-23	94.0
MS.gene42018.t1	MTR_4g029180	37.500	144	88	2	26	168	179	321	1.19e-22	92.8
MS.gene42018.t1	MTR_1g025980	36.364	154	86	5	22	167	168	317	4.95e-22	91.3
MS.gene42018.t1	MTR_5g074760	39.726	146	83	4	26	168	178	321	5.01e-22	91.3
MS.gene42018.t1	MTR_2g084010	38.255	149	89	3	22	168	171	318	5.89e-22	90.9
MS.gene42018.t1	MTR_4g074995	33.133	166	104	3	8	168	145	308	1.13e-21	90.1
MS.gene42018.t1	MTR_4g083710	35.135	148	91	2	26	168	177	324	1.15e-21	90.5
MS.gene42018.t1	MTR_4g046713	34.940	166	97	4	11	168	164	326	1.23e-21	90.1
MS.gene42018.t1	MTR_2g084000	36.913	149	91	3	22	168	172	319	1.44e-21	90.1
MS.gene42018.t1	MTR_2g008730	36.364	154	87	3	26	168	148	301	2.29e-21	89.4
MS.gene42018.t1	MTR_3g094630	36.025	161	99	3	11	168	163	322	2.77e-21	89.4
MS.gene42018.t1	MTR_2g084020	37.333	150	89	4	22	168	171	318	6.48e-21	88.2
MS.gene42018.t1	MTR_2g008710	35.714	154	88	3	26	168	172	325	1.73e-20	87.0
MS.gene42018.t1	MTR_7g026990	34.899	149	94	3	22	169	177	323	1.94e-19	84.3
MS.gene42018.t1	MTR_5g033470	30.909	165	101	5	15	168	215	377	3.11e-19	84.3
MS.gene42018.t1	MTR_5g074710	36.301	146	88	4	26	168	178	321	4.98e-19	83.2
MS.gene42018.t1	MTR_5g074740	36.986	146	87	4	26	168	178	321	2.59e-18	81.3
MS.gene42018.t1	MTR_2g099175	30.573	157	97	3	24	168	179	335	3.00e-18	81.3
MS.gene42018.t1	MTR_4g114210	35.484	155	88	4	26	168	166	320	4.29e-18	80.5
MS.gene42018.t1	MTR_1g115900	34.437	151	94	4	22	168	172	321	1.51e-17	79.0
MS.gene42018.t1	MTR_5g049280	33.333	156	90	5	26	168	183	337	2.29e-17	78.6
MS.gene42018.t1	MTR_4g074990	30.994	171	97	3	2	168	152	305	1.47e-16	76.3
MS.gene42018.t1	MTR_7g107500	41.667	96	55	1	73	168	3	97	2.78e-16	71.2
MS.gene42018.t1	MTR_5g074700	33.566	143	82	3	26	168	85	214	2.01e-14	68.9
MS.gene42018.t1	MTR_4g074980	29.341	167	93	5	2	168	153	294	4.55e-11	60.8
MS.gene42018.t1	MTR_5g074860	38.000	100	58	3	71	167	187	285	5.03e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42018.t1	AT1G71695	55.828	163	70	2	26	186	196	358	1.67e-58	187
MS.gene42018.t1	AT5G06730	47.134	157	74	3	22	169	179	335	8.66e-39	136
MS.gene42018.t1	AT5G06720	45.098	153	75	3	26	169	182	334	3.76e-35	126
MS.gene42018.t1	AT5G19880	42.767	159	81	3	20	168	171	329	1.40e-34	124
MS.gene42018.t1	AT5G14130	42.484	153	82	1	22	168	178	330	1.62e-34	124
MS.gene42018.t1	AT5G14130	42.484	153	82	1	22	168	219	371	2.08e-34	125
MS.gene42018.t1	AT2G18980	42.857	154	81	2	22	168	170	323	3.98e-33	120
MS.gene42018.t1	AT4G08770	42.331	163	82	5	33	185	182	342	9.57e-33	120
MS.gene42018.t1	AT4G08780	41.358	162	83	5	34	185	183	342	1.65e-32	119
MS.gene42018.t1	AT4G30170	42.208	154	82	3	22	168	172	325	1.95e-32	119
MS.gene42018.t1	AT4G37520	42.857	154	81	2	22	168	173	326	6.41e-32	117
MS.gene42018.t1	AT4G37520	42.857	154	81	2	22	168	176	329	7.68e-32	117
MS.gene42018.t1	AT4G37530	42.857	154	81	2	22	168	176	329	2.77e-31	115
MS.gene42018.t1	AT5G19890	43.871	155	72	5	26	168	176	327	1.24e-30	114
MS.gene42018.t1	AT2G24800	40.260	154	82	3	25	168	176	329	2.02e-30	114
MS.gene42018.t1	AT2G37130	40.000	160	90	3	14	168	138	296	2.52e-30	112
MS.gene42018.t1	AT2G37130	40.000	160	90	3	14	168	169	327	4.81e-30	112
MS.gene42018.t1	AT2G38380	43.448	145	71	4	34	168	190	333	1.95e-29	111
MS.gene42018.t1	AT1G14550	39.216	153	91	2	18	168	169	321	2.27e-29	110
MS.gene42018.t1	AT2G38390	39.429	175	96	4	4	168	159	333	2.53e-29	111
MS.gene42018.t1	AT4G36430	38.750	160	88	4	18	168	172	330	2.93e-29	110
MS.gene42018.t1	AT5G58390	42.857	147	78	3	26	168	172	316	7.18e-29	109
MS.gene42018.t1	AT5G67400	40.260	154	85	2	22	168	176	329	7.98e-29	109
MS.gene42018.t1	AT5G17820	37.086	151	86	2	24	168	166	313	3.21e-28	107
MS.gene42018.t1	AT4G31760	37.975	158	88	4	20	168	170	326	6.54e-28	107
MS.gene42018.t1	AT5G17820	37.086	151	86	2	24	168	219	366	7.00e-28	107
MS.gene42018.t1	AT2G35380	36.709	158	83	4	26	168	92	247	1.18e-27	104
MS.gene42018.t1	AT2G18140	38.158	152	84	4	26	168	185	335	1.30e-27	106
MS.gene42018.t1	AT2G18150	38.816	152	83	4	26	168	186	336	1.34e-27	106
MS.gene42018.t1	AT5G40150	39.726	146	85	2	26	168	183	328	1.52e-27	106
MS.gene42018.t1	AT3G28200	39.310	145	86	1	26	168	172	316	2.45e-27	105
MS.gene42018.t1	AT2G35380	36.709	158	83	4	26	168	180	335	3.26e-27	105
MS.gene42018.t1	AT3G50990	39.130	161	90	3	16	168	181	341	3.52e-27	105
MS.gene42018.t1	AT3G49960	38.312	154	88	2	22	168	176	329	4.30e-27	105
MS.gene42018.t1	AT4G33420	42.568	148	81	2	22	168	181	325	4.48e-27	104
MS.gene42018.t1	AT2G34060	37.195	164	94	3	12	166	181	344	4.79e-27	105
MS.gene42018.t1	AT3G03670	39.752	161	85	4	17	168	164	321	8.81e-27	103
MS.gene42018.t1	AT5G51890	39.873	158	82	6	20	168	169	322	1.06e-26	103
MS.gene42018.t1	AT4G33420	42.568	148	81	2	22	168	228	372	1.13e-26	104
MS.gene42018.t1	AT1G14540	40.000	150	86	3	22	168	167	315	1.35e-26	103
MS.gene42018.t1	AT4G16270	37.267	161	91	4	16	168	190	348	1.59e-26	103
MS.gene42018.t1	AT3G32980	38.854	157	84	4	34	180	190	344	1.63e-26	103
MS.gene42018.t1	AT3G49120	39.310	145	78	3	34	168	191	335	2.05e-26	103
MS.gene42018.t1	AT4G21960	34.375	160	99	3	14	168	169	327	2.64e-26	102
MS.gene42018.t1	AT3G49110	40.000	145	77	3	34	168	192	336	2.72e-26	103
MS.gene42018.t1	AT1G30870	39.103	156	84	4	22	168	192	345	2.94e-26	103
MS.gene42018.t1	AT5G58400	38.710	155	91	3	17	168	172	325	3.20e-26	102
MS.gene42018.t1	AT4G17690	39.490	157	91	3	15	168	167	322	4.09e-26	102
MS.gene42018.t1	AT4G26010	37.931	145	86	3	25	168	196	337	4.68e-26	102
MS.gene42018.t1	AT4G26010	37.931	145	86	3	25	168	168	309	4.92e-26	101
MS.gene42018.t1	AT2G39040	38.365	159	85	5	22	168	193	350	1.19e-25	101
MS.gene42018.t1	AT5G66390	36.478	159	93	3	18	168	175	333	4.76e-25	99.8
MS.gene42018.t1	AT1G49570	38.926	149	81	3	26	164	198	346	7.42e-25	99.4
MS.gene42018.t1	AT5G64120	35.570	149	90	2	26	168	180	328	8.25e-25	99.0
MS.gene42018.t1	AT5G47000	38.411	151	89	2	22	168	180	330	1.02e-24	98.6
MS.gene42018.t1	AT1G24110	37.419	155	90	3	24	171	171	325	1.48e-24	98.2
MS.gene42018.t1	AT1G34510	37.500	144	86	3	26	168	169	309	2.76e-24	97.1
MS.gene42018.t1	AT5G05340	37.419	155	93	2	17	168	171	324	4.21e-24	97.1
MS.gene42018.t1	AT1G05260	36.538	156	90	4	22	168	170	325	1.35e-23	95.5
MS.gene42018.t1	AT1G44970	35.583	163	94	4	16	168	185	346	1.03e-22	93.6
MS.gene42018.t1	AT4G11290	36.970	165	92	5	13	168	165	326	1.84e-22	92.4
MS.gene42018.t1	AT2G22420	35.404	161	94	4	22	175	169	326	2.90e-22	92.0
MS.gene42018.t1	AT5G39580	34.667	150	91	3	26	168	170	319	7.29e-22	90.9
MS.gene42018.t1	AT3G17070	33.987	153	93	2	24	168	124	276	1.01e-21	89.7
MS.gene42018.t1	AT5G42180	37.333	150	82	4	26	167	171	316	1.14e-21	90.1
MS.gene42018.t1	AT3G17070	33.987	153	93	2	24	168	187	339	1.72e-21	90.1
MS.gene42018.t1	AT3G21770	34.416	154	92	4	22	166	173	326	8.81e-21	88.2
MS.gene42018.t1	AT5G15180	32.515	163	100	3	13	168	170	329	2.16e-20	87.0
MS.gene42018.t1	AT4G37530	44.860	107	52	2	22	121	176	282	4.41e-20	85.5
MS.gene42018.t1	AT1G05240	33.544	158	96	3	20	168	168	325	6.72e-20	85.5
MS.gene42018.t1	AT1G05250	33.544	158	96	3	20	168	168	325	6.72e-20	85.5
MS.gene42018.t1	AT3G01190	31.818	154	98	2	22	168	168	321	2.27e-19	84.0
MS.gene42018.t1	AT1G68850	35.443	158	85	6	26	168	180	335	2.90e-18	81.3
MS.gene42018.t1	AT5G24070	31.013	158	97	3	24	169	179	336	9.22e-18	79.7
MS.gene42018.t1	AT2G41480	32.258	155	93	3	26	168	174	328	3.30e-17	78.2
MS.gene42018.t1	AT1G77100	32.680	153	97	4	22	168	167	319	1.63e-15	73.6
MS.gene42018.t1	AT5G22410	30.201	149	93	4	26	164	174	321	1.81e-14	70.5
MS.gene42018.t1	AT5G64110	31.818	154	93	4	26	168	178	330	2.75e-14	70.1
MS.gene42018.t1	AT2G43480	27.389	157	102	3	24	168	179	335	5.41e-14	69.3

Find 29 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATCTGTGACATCAAAGTTT+TGG	0.266237	6.4:+16885297	None:intergenic
ACAGATGTTGTTGCATTATC+AGG	0.305416	6.4:-16885281	MS.gene42018:CDS
GCTAAATGTAATGTGGTAAA+TGG	0.345255	6.4:-16884897	MS.gene42018:CDS
GTGTTGCCTGAATTTGCATT+AGG	0.360923	6.4:+16885152	None:intergenic
GGTGAGTCAGTTGAATGTTT+TGG	0.374761	6.4:-16884943	MS.gene42018:CDS
TATTTGTTGTCGAATGTTGC+CGG	0.379179	6.4:+16885107	None:intergenic
TTGTCCATTGTAGGGTCTGC+TGG	0.384649	6.4:+16885206	None:intergenic
TCGAATCAATGTTCAAATCT+TGG	0.394563	6.4:+16885042	None:intergenic
TGTTGCCTGAATTTGCATTA+GGG	0.401527	6.4:+16885153	None:intergenic
TTATCAGGTGCACACACATT+TGG	0.411956	6.4:-16885266	MS.gene42018:CDS
TGATTCGAGGACAAAGGGTT+TGG	0.421309	6.4:-16885027	MS.gene42018:CDS
ACACTGCAAACCTAGACATT+AGG	0.442026	6.4:-16885133	MS.gene42018:CDS
CTTGTTTGTTCATCAAATCA+AGG	0.451076	6.4:+16885081	None:intergenic
AACATTGATTCGAGGACAAA+GGG	0.472059	6.4:-16885032	MS.gene42018:CDS
ATTTGTTGTCGAATGTTGCC+GGG	0.478530	6.4:+16885108	None:intergenic
ACTTGCCCTAATGCAAATTC+AGG	0.479618	6.4:-16885158	MS.gene42018:CDS
AAGATTTGAACATTGATTCG+AGG	0.487714	6.4:-16885040	MS.gene42018:CDS
AACTATGGTGGAAGAGGGAA+TGG	0.501394	6.4:-16884853	MS.gene42018:CDS
TTGCCGGGGTCCTAATGTCT+AGG	0.508256	6.4:+16885123	None:intergenic
TTTGTCAACTATGGTGGAAG+AGG	0.533152	6.4:-16884859	MS.gene42018:CDS
GAACATTGATTCGAGGACAA+AGG	0.564600	6.4:-16885033	MS.gene42018:CDS
CTTGATTTGATGAACAAACA+AGG	0.578618	6.4:-16885080	MS.gene42018:CDS
TTGTCAACTATGGTGGAAGA+GGG	0.582301	6.4:-16884858	MS.gene42018:CDS
ACATTTGGTCGTGCACATTG+TGG	0.592460	6.4:-16885251	MS.gene42018:CDS
CTCTCCAGCAGACCCTACAA+TGG	0.649234	6.4:-16885210	MS.gene42018:CDS
AAATGTAATGTGGTAAATGG+TGG	0.658711	6.4:-16884894	MS.gene42018:CDS
TTTGTTGTCGAATGTTGCCG+GGG	0.666395	6.4:+16885109	None:intergenic
AATTCGTGCTAAATGTAATG+TGG	0.676115	6.4:-16884904	MS.gene42018:CDS
AAACCTAGACATTAGGACCC+CGG	0.678367	6.4:-16885126	MS.gene42018:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTTTATTAATGCTTTTATTA+AGG	-	chr6.4:16885249-16885268	MS.gene42018:CDS	15.0%
	AAATGTAATGTGGTAAATGG+TGG	-	chr6.4:16885319-16885338	MS.gene42018:CDS	30.0%
	AATTCGTGCTAAATGTAATG+TGG	-	chr6.4:16885309-16885328	MS.gene42018:CDS	30.0%
	CTTGTTTGTTCATCAAATCA+AGG	+	chr6.4:16885135-16885154	None:intergenic	30.0%
	GCTAAATGTAATGTGGTAAA+TGG	-	chr6.4:16885316-16885335	MS.gene42018:CDS	30.0%
	TCGAATCAATGTTCAAATCT+TGG	+	chr6.4:16885174-16885193	None:intergenic	30.0%
!	ATCTGTGACATCAAAGTTTT+GGG	+	chr6.4:16884918-16884937	None:intergenic	30.0%
!	CTTGATTTGATGAACAAACA+AGG	-	chr6.4:16885133-16885152	MS.gene42018:CDS	30.0%
!	GAAATCTGTTTTGTCAACTA+TGG	-	chr6.4:16885345-16885364	MS.gene42018:CDS	30.0%
!!	AAGATTTGAACATTGATTCG+AGG	-	chr6.4:16885173-16885192	MS.gene42018:CDS	30.0%
!!	GTAACATCTGTTTTGTTGAA+TGG	+	chr6.4:16884880-16884899	None:intergenic	30.0%
!!!	AATGTTTTGGTTGGAAATCA+AGG	-	chr6.4:16885283-16885302	MS.gene42018:CDS	30.0%
	ACAGATGTTGTTGCATTATC+AGG	-	chr6.4:16884932-16884951	MS.gene42018:CDS	35.0%
	TGTTGCCTGAATTTGCATTA+GGG	+	chr6.4:16885063-16885082	None:intergenic	35.0%
!	ATCTGTTTTGTCAACTATGG+TGG	-	chr6.4:16885348-16885367	MS.gene42018:CDS	35.0%
!	CATCTGTGACATCAAAGTTT+TGG	+	chr6.4:16884919-16884938	None:intergenic	35.0%
!!	AACATTGATTCGAGGACAAA+GGG	-	chr6.4:16885181-16885200	MS.gene42018:CDS	35.0%
!!	TATTTGTTGTCGAATGTTGC+CGG	+	chr6.4:16885109-16885128	None:intergenic	35.0%
!!	TCTGTTTTGTTGAATGGTTG+TGG	+	chr6.4:16884874-16884893	None:intergenic	35.0%
!!!	AGTCAGTTGAATGTTTTGGT+TGG	-	chr6.4:16885274-16885293	MS.gene42018:CDS	35.0%
!!!	GTTTTTGAGGTTTTGAGCTA+GGG	+	chr6.4:16885035-16885054	None:intergenic	35.0%
!!!	TGTTTTTGAGGTTTTGAGCT+AGG	+	chr6.4:16885036-16885055	None:intergenic	35.0%
	ACACTGCAAACCTAGACATT+AGG	-	chr6.4:16885080-16885099	MS.gene42018:CDS	40.0%
	ACTTGCCCTAATGCAAATTC+AGG	-	chr6.4:16885055-16885074	MS.gene42018:CDS	40.0%
	GTGTTGCCTGAATTTGCATT+AGG	+	chr6.4:16885064-16885083	None:intergenic	40.0%
	TTATCAGGTGCACACACATT+TGG	-	chr6.4:16884947-16884966	MS.gene42018:CDS	40.0%
!	GGTGAGTCAGTTGAATGTTT+TGG	-	chr6.4:16885270-16885289	MS.gene42018:CDS	40.0%
!	TTGTCAACTATGGTGGAAGA+GGG	-	chr6.4:16885355-16885374	MS.gene42018:CDS	40.0%
!	TTTGTCAACTATGGTGGAAG+AGG	-	chr6.4:16885354-16885373	MS.gene42018:CDS	40.0%
!!	ATTTGTTGTCGAATGTTGCC+GGG	+	chr6.4:16885108-16885127	None:intergenic	40.0%
!!	CATTAGGGCAAGTGTTTTTG+AGG	+	chr6.4:16885048-16885067	None:intergenic	40.0%
!!	CTAGGGTTTTGTCCATTGTA+GGG	+	chr6.4:16885018-16885037	None:intergenic	40.0%
!!	GAACATTGATTCGAGGACAA+AGG	-	chr6.4:16885180-16885199	MS.gene42018:CDS	40.0%
	AAACCTAGACATTAGGACCC+CGG	-	chr6.4:16885087-16885106	MS.gene42018:CDS	45.0%
	ACATTTGGTCGTGCACATTG+TGG	-	chr6.4:16884962-16884981	MS.gene42018:CDS	45.0%
	TGATTCGAGGACAAAGGGTT+TGG	-	chr6.4:16885186-16885205	MS.gene42018:CDS	45.0%
!	AACTATGGTGGAAGAGGGAA+TGG	-	chr6.4:16885360-16885379	MS.gene42018:CDS	45.0%
!	TTTGTTGTCGAATGTTGCCG+GGG	+	chr6.4:16885107-16885126	None:intergenic	45.0%
!!	GCTAGGGTTTTGTCCATTGT+AGG	+	chr6.4:16885019-16885038	None:intergenic	45.0%
	TTGTCCATTGTAGGGTCTGC+TGG	+	chr6.4:16885010-16885029	None:intergenic	50.0%
	CTCTCCAGCAGACCCTACAA+TGG	-	chr6.4:16885003-16885022	MS.gene42018:CDS	55.0%
	TTGCCGGGGTCCTAATGTCT+AGG	+	chr6.4:16885093-16885112	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	16884833	16885402	16884833	ID=MS.gene42018
chr6.4	mRNA	16884833	16885402	16884833	ID=MS.gene42018.t1;Parent=MS.gene42018
chr6.4	exon	16884833	16885402	16884833	ID=MS.gene42018.t1.exon1;Parent=MS.gene42018.t1
chr6.4	CDS	16884833	16885402	16884833	ID=cds.MS.gene42018.t1;Parent=MS.gene42018.t1

Gene Sequence

>MS.gene42018

ATGGCAAAACTTTTAGCATTAAAGAAACAAGCAATCTTCCACAACCATTCAACAAAACAGATGTTACACTCAGTTTTTGCAGCCCAAAACTTTGATGTCACAGATGTTGTTGCATTATCAGGTGCACACACATTTGGTCGTGCACATTGTGGAACATTCTTCAATAGACTCTCTCCAGCAGACCCTACAATGGACAAAACCCTAGCTCAAAACCTCAAAAACACTTGCCCTAATGCAAATTCAGGCAACACTGCAAACCTAGACATTAGGACCCCGGCAACATTCGACAACAAATACTACCTTGATTTGATGAACAAACAAGGTTTGTTCACATCTGACCAAGATTTGAACATTGATTCGAGGACAAAGGGTTTGGTTAATGATTTTGCTGTTAATCAGAATTTGTTCTTTGAGAAGTTTATTAATGCTTTTATTAAGGTGAGTCAGTTGAATGTTTTGGTTGGAAATCAAGGTGAAATTCGTGCTAAATGTAATGTGGTAAATGGTGGTAAGAAATCTGTTTTGTCAACTATGGTGGAAGAGGGAATGGACTTGATTGAGCAATTTTAA

Protein sequence

>MS.gene42018.t1

MAKLLALKKQAIFHNHSTKQMLHSVFAAQNFDVTDVVALSGAHTFGRAHCGTFFNRLSPADPTMDKTLAQNLKNTCPNANSGNTANLDIRTPATFDNKYYLDLMNKQGLFTSDQDLNIDSRTKGLVNDFAVNQNLFFEKFINAFIKVSQLNVLVGNQGEIRAKCNVVNGGKKSVLSTMVEEGMDLIEQF